Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars

Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil

Russula griseocarnosa is a wild, ectomycorrhizal, edible, and medicinal fungus with high economic value in southern China. R. griseocarnosa fruiting bodies cannot be artificially cultivated. To better understand the effects of abiotic and biotic factors on R. griseocarnosa growth, the physicochemical properties of R. griseocarnosa and its associated bacterial communities were investigated in two soil types (mycosphere and bulk soil) from Fujian, Guangdong, and Guangxi Provinces. The results revealed that the diversity, community structure, and functional characteristics of the dominant mycosphere bacteria in all geographical locations were similar. Soil pH and available nitrogen (AN) are the major factors influencing the mycosphere-soil bacterial communities' structure. The diversity of soil bacteria is decreased in R. griseocarnosa mycosphere when compared with the bulk soil. Burkholderia-Paraburkholderia, Mycobacterium, Roseiarcus, Sorangium, Acidobacterium, and Singulisphaera may also be mycorrhiza helper bacteria (MHB) of R. griseocarnosa. The functional traits related to the two-component system, bacterial secretion system, tyrosine metabolism, biosynthesis of unsaturated fatty acids, and metabolism of cofactors and vitamins were more abundant in R. griseocarnosa mycosphere soil. The mycosphere soil bacteria of R. griseocarnosa play a key role in R. griseocarnosa growth. Application of management strategies, such as N fertilizer and microbial fertilizer containing MHB, may promote the conservation, propagation promotion, and sustainable utilization of R. griseocarnosa.

Biochar altered native soil organic carbon by changing soil aggregate size distribution and native SOC in aggregates based on an 8-year field experiment

Soil aggregates play an important function in soil carbon sequestration because larger aggregates have higher soil organic carbon contents. A field experiment was set up in 2009 that included four treatments, i.e., B0, B30, B60, and B90 representing biochar application rates of 0, 30, 60, and 90 t ha^-1, respectively. In 2017, we investigated the soil aggregate distribution, biochar and n-SOC contents in soil and different aggregate sizes using the ignition method, as well as the contribution of wheat and maize residues to n-SOC content in each aggregate by isotopic analysis. The results showed that, relative to B0, the n-SOC content presented an 14.0% decrease in B30, compared with an 18.8% and 8.2% increase in B60 and B90 (p < 0.05), respectively. Furthermore, the decreased n-SOC content in B30 was due to the decreased proportions of < 53 μm and 1000-250 μm aggregates. The increased n-SOC content in B60 was due to the significantly enhanced proportion of 2000-1000 μm and 1000-250 μm aggregates because the n-SOC contents of these two aggregates size classes were not changed by biochar. However, in B90, the increased n-SOC content was ascribed to the enhanced proportions of 2000-1000 μm and < 53 μm aggregates, although the n-SOC content in 2000-1000 μm aggregate was significantly decreased by biochar. Further analysis showed that the decreased n-SOC content in 2000-1000 μm aggregates was associated with decreased wheat-derived n-SOC content. In synthesis, our study showed a long-term effect of biochar on the n-SOC content by mainly changing soil aggregation and native organic carbon derived from wheat residue, and this effect was dependent on the applied amount. The biochar rate of 60 t ha^-1 is recommended for carbon sequestration in terms of the more pronounced negative priming of native SOC, while the feasible combination between other biochars and soils needs further clarification.

Bacterial Diversity in Roots, Stems, and Leaves of Chinese Medicinal Plant Paris polyphylla var. yunnanensis

The root of Paris polyphylla var. yunnanensis, a famous and endangered traditional Chinese herb, has a significant medicinal value. The aim of this study was to analyze the composition and functional characteristics of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis. The 16S rRNA gene sequencing and functional prediction of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis were conducted. The Chao and Shannon indices of the bacteria in roots were significantly higher than those in stems and leaves. The dominant endophyte phyla were Cyanobacteria, Proteobacteria, Bacteroidetes, Firmicutes, and Actinobacteria. The main genera detected in roots were unclassified Cyanobacteria, Rhizobium, Flavobacterium, and Sphingobium; the main genera in stems were norank_c__Cyanobacteria, Bacillus, and Pseudomonas; the main genera in leaves were norank_c__Cyanobacteria and Rhizobium. The microbiota in roots was particularly enriched in functional categories "extracellular structures" and "cytoskeleton" compared with stems and leaves (p < 0.05). Our study reveals the structural and functional characteristics of the endophytic bacteria in roots, stems, and leaves of P. polyphylla var. yunnanensis, which aids in the scientific understanding of this plant.

The root of Paris polyphylla var. yunnanensis, a famous and endangered traditional Chinese herb, has a significant medicinal value. The aim of this study was to analyze the composition and functional characteristics of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis. The 16S rRNA gene sequencing and functional prediction of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis were conducted. The Chao and Shannon indices of the bacteria in roots were significantly higher than those in stems and leaves. The dominant endophyte phyla were Cyanobacteria, Proteobacteria, Bacteroidetes, Firmicutes, and Actinobacteria. The main genera detected in roots were unclassified Cyanobacteria, Rhizobium, Flavobacterium, and Sphingobium; the main genera in stems were norank_c__Cyanobacteria, Bacillus, and Pseudomonas; the main genera in leaves were norank_c__Cyanobacteria and Rhizobium. The microbiota in roots was particularly enriched in functional categories “extracellular structures” and “cytoskeleton” compared with stems and leaves (p < 0.05). Our study reveals the structural and functional characteristics of the endophytic bacteria in roots, stems, and leaves of P. polyphylla var. yunnanensis, which aids in the scientific understanding of this plant.

Time-course relationship between environmental factors and microbial diversity in tobacco soil

Soil physicochemical properties and microbial diversity both play equally important roles in tobacco cultivation. However, the relationship between these factors remains unclear. In this study, we investigated their correlations through the whole tobacco growth period, including the pretransplanting (YX-p), root extending (R), flourishing (F), and mature (M) stages in the Yuxi region of the Yunnan-Guizhou Plateau by measuring physicochemical properties and conducting 16S/18S rRNA analysis. The analysis demonstrated that the microbial community richness and diversity continuously changed along with the growth course of the tobacco. Multiple environmental factors showed a certain correlation with the diversity of microbial communities. Some bacteria could accumulate nitrogen during the growth stages, and the diversity of the bacterial community also increased when the content of organic matter rose. In addition, the water content and available K also influenced the diversity of the microbial community. The dynamic changes in soil physicochemical properties and enzyme activities gave rise to differences in the microbial community composition and structure, all of which affected the growth of tobacco. This study revealed the time-course relationship between environmental factors and microbial diversity in tobacco soil. An understanding of this relationship provides guidance for research on the interaction system of plants, soil and microbes and on improving plant yield and quality.

Risk assessment for and microbial community changes in Farmland soil contaminated with heavy metals and metalloids

Food security and human health can be seriously affected by heavy metal and metalloid (HM) pollution of soil. In this study, the risks posed by HMs and microbial community responses to HM pollution of agricultural soil in southwestern China were investigated. The C, N, P, and S (nutrients) concentrations were 12040.7-15912.7, 1298.06-1832.01, 750.91-2050.35, and 269.17-2115.52 mg/kg, respectively. The As, Cd, Cr, Cu, Hg, Ni, Pb, and Zn concentrations were 3.11-8.20, 1.85-6.56, 22.83-43.96, 11.21-23.30, 0.08-0.81, 11.02-22.97, 24.07-42.96, and 193.63-698.39 mg/kg, respectively. Interpolation analysis indicated that the nutrient and HM concentrations varied spatially rather strongly. The concentrations of all of the elements were higher in soil from the northern sampling sites than in soil from the other sites. HMs in soil were found to pose high levels of risk (RI 898.85, i.e., >600). Cd contributed more than the other HMs to the risk assessment values (Er_Cd 293.72-1031.94), so was the most serious contaminant. Microbial diversity decreased over time in soil with high HM concentrations (plot S2) and was lower than in soil with low HM concentrations (plot S8). The nutrient and HM concentrations correlated with the microbial community characteristics. Proteobacteria, Acidobacteria, and Chloroflexi were (in decreasing order) the dominant bacterial phyla. We speculate that these phyla may be strongly resistant to HMs. The fourth most common phylum was Actinobacteria. Bacteria in this phylum could be used as biological indicators of the HM pollution status. Soil micro-ecosystems can self-regulate. HM stress will affect the evolution of soil microorganisms and relevant functional genes. The spatiotemporal variability in the microbial community responses to HMs and the spatial analysis and ecological risk assessment results will be useful reference data for the remediation of HM-polluted soil.

Driving forces linking microbial community structure and functions to enhanced carbon stability in biochar-amended soil

Biochar induces various priming effects on native soil organic carbon (nSOC), whereas the underlying mechanisms linking these to soil microbial community structure and functions remain unclear. To investigate soil microbial community structure and functions associated with priming effects, rice straw (RS) and the derived biochar samples (RS400 and RS700, pyrolyzed at 400 °C and 700 °C, respectively) were applied to a sandy loam soil for a 33- and 200-day incubation. Using stable C isotopic ratios, CO₂-C emissions from biochar/feedstock and nSOC were quantitatively identified and indicated an enhanced C stability of RS700 over that of RS and RS400. A decreased soil pH and increased dissolved organic carbon and NH₄⁺-N concentrations with the RS amendment are driving forces that lead to an enhanced soil microbial activity and a higher abundance of heterotrophic microbes, especially Proteobacteria and Acidobacteria, which contribute to high CO₂ emissions. The enhanced C stability of biochar and nSOC over that of pristine feedstock was primarily attributable to a stable and high soil pH, which minimized the disturbance of soil heterotrophic microbial community structure and functions, favoring the growth of Actinobacteria, Proteobacteria, and Ascomycota. The biochar amendment in soil enriched the metabolic pathways of biosynthesis and the decomposition of secondary metabolites, polycyclic aromatic hydrocarbons (PAHs) degradation, and electron transfer carriers.

Biotic factors drive distinct DNRA potential rates and contributions in typical Chinese shallow lake sediments

Dissimilatory nitrate reduction to ammonia (DNRA) is an important nitrate reduction pathway in lake sediments; however, little is known about the biotic factors driving the DNRA potential rates and contributions to the fate of nitrate. This study reports the first investigation of DNRA potential rates and contributions in lake sediments linked to DNRA community structures. The results of ¹⁵N isotope-tracing incubation experiments showed that 12 lakes had distinct DNRA potentials, which could be clustered into 2 groups, one with higher DNRA potentials (rates varied from 2.7 to 5.0 nmol N g^-1 h^-1 and contributions varied from 27.5% to 35.4%) and another with lower potentials (rates varied from 0.6 to 2.3 nmol N g^-1 h^-1 and contributions varied from 8.1% to 22.8%). Sediment C/N and the abundance of the nrfA gene were the key abiotic and biotic factors accounting for the distinct DNRA potential rates, respectively. A high-throughput sequencing analysis of the nrfA gene revealed that the sediment C/N could also affect the DNRA potential rates by altering the ecological patterns of the DNRA community composition. In addition, the interactions between the DNRA community and the denitrifying community were found to be obviously different in the two groups. In the higher DNRA potential group, the DNRA community mainly interacted with heterotrophic denitrifiers, while in the lower DNRA potential group, both heterotrophic and sulfur-driven autotrophic denitrifiers might cooperate with the DNRA community. The present study highlighted the role of the sulfur-driven nitrate reduction pathway in C-limited sediments, which has always been overlooked in freshwater environments, and gave new insights into the molecular mechanism influencing the fate of nitrate.

Exposure to cadmium induced gut histopathological damages and microbiota alterations of Chinese toad (Bufo gargarizans) larvae

Cadmium (Cd) is highly hazardous to both terrestrial and aquatic life and it also has multiple negative impacts on amphibian tadpoles and frogs. However, its effects on gut health of amphibian tadpoles are still poorly understood. We used Chinese toad (Bufo gargarizans) tadpoles to examine the effects of chronic cadmium exposure on gut histology and intestinal microbiota by using regular histology analysis and high-throughput sequencing techniques. Tadpoles were exposed to cadmium concentrations at 0, 5, 100 and 200 μg L^-1 from Gosner stage 26 to 38. Our results showed 100 and 200 μg L^-1 cadmium exposure caused severe gut histopathological alterations while 5 μg L^-1 cadmium exposure induced subtle intestine damage. Moreover, species diversity, taxonomic composition and community structure of gut microbiota were influenced by cadmium exposure. Species diversity and richness decreased gradually with the increase of cadmium concentration. Microbial communities of tadpoles in 100 and 200 μg L^-1 cadmium exposure groups were remarkably different from those in control group. Furthermore, the relative abundances of prevalent phyla such as Proteobacteria, Bacteroidetes and Firmicutes and dominant genera such as Klebsiella and Aeromonas were also affected by cadmium exposure. We concluded that cadmium could be harmful to tadpole health by inducing intestinal damages and gut microbiota changes.

Potential use of high-throughput sequencing of bacterial communities for postmortem submersion interval estimation

Microorganisms play vital roles in the natural decomposition of carcasses in aquatic systems. Using high-throughput sequencing techniques, we evaluated the composition and succession of microbial communities throughout the decomposition of rat carcasses in freshwater. A total of 4,428,781 high-quality 16S rRNA gene sequences and 2144 operational taxonomic units were obtained. Further analysis revealed that the microbial composition differed significantly between the epinecrotic (rat skins) and the epilithic (rocks) samples. During the carcass decomposition process, Proteobacteria became the dominant phylum in the epinecrotic, epilithic, and environmental (water) samples, followed by Firmicutes in the epinecrotic samples and Bacteroidetes in the epilithic and water samples. Microbial communities were influenced by numerous environmental factors, such as dissolved oxygen content and conductivity. Our study provides new insight about postmortem submersion interval (PMSI) estimation in aquatic environments.

Chemical Aging Changed Aggregation Kinetics and Transport of Biochar Colloids

Little is known about aggregation and transport behaviors of aged biochar colloids in the terrestrial environment. This study investigated aggregation kinetics and transport of biochar colloids from aged (HNO₃ treatment) and pristine pinewood biochars pyrolyzed at 300 and 600 °C (PB300 and PB600) in NaCl and CaCl₂ solutions. In NaCl solutions, critical coagulation concentrations (CCCs) of aged PB300 and PB600 colloids (540 mM and 327 mM) were much greater than the CCCs of pristine biochar colloids (300 mM and 182 mM). This is likely due to substantial increase of negatively charged oxygen-containing functional groups (primarily carboxyl) on aged biochar surfaces. Intriguingly, in CaCl₂ solutions the CCCs of the aged PB300 and PB600 colloids decreased to 25.2 mM and 32.1 mM from 58.6 mM and 41.7 mM for the pristine colloids, respectively. This probably resulted from greater surface charge neutralization and Ca²⁺ bridging for the aged biochar colloids. In salt solutions (e.g., 10 and 50 mM NaCl and 1 and 10 mM CaCl₂), the aged biochar colloids showed higher mobility in porous media than the pristine biochar colloids. This study demonstrated that pristine and aged biochar colloids were stable in the solutions with environmentally relevant ionic strength, and the aging process might substantially increase their mobility in the subsurface.

Acupuncture Regulating Gut Microbiota in Abdominal Obese Rats Induced by High-Fat Diet

Objective

To investigate the effects of acupuncture on metabolic health and gut microbiota dysbiosis in diet-induced abdominal obese model.

Materials and Methods

Male Sprague-Dawley rats were randomly distributed into normal chow diet (NCD) group and high-fat diet (HFD) group. After 12 weeks of HFD feeding, an abdominal obese rat model was established. The abdominal obese rats were further assigned to acupuncture group (n=7) and nontreated HFD group (n=7). Acupuncture was applied to bilateral GB 26 of rats for 8 weeks. Subsequently, the body weight, waist circumference (WC), visceral fat mass, and liver weight were measured weekly in all rats. Metabolic parameters such as total cholesterol, triglyceride, alanine aminotransferase, aspartate transaminase, and blood glucose were measured by an automatic biochemical analyzer. The serum levels of insulin (INS) were determined using Rat INS ELISA Kit. Analysis of gut microbiota was carried out by 16S rRNA gene sequencing.

Results

Acupuncture decreased the body weight, WC, and visceral adipose tissues of HFD-induced abdominal obese rats. In addition, insulin sensitivity, glucose homeostasis, and lipid metabolism were improved by this treatment. Furthermore, electroacupuncture effectively modified the composition of gut microbiota, mainly via decreasing Firmicutes/Bacteroidetes ratio and increasing Prevotella_9 abundance.

Conclusions

Electroacupuncture can ameliorate abdominal obesity and prevent metabolic disorders in HFD-induced abdominal obese rats, via the modulation of gut microbiota.

The Characterization of Microbial Communities Response to Shallow Groundwater Contamination in Typical Piedmont Region of Taihang Mountains in the North China Plain

Regional-scale nitrate and organic contaminants in the shallow groundwater were investigated in the Piedmont region of Taihang Mountains (PRTM), but the information of the microbial communities is limited. However, microorganisms provide a dominated contribution to indicate and degrade the contaminants in the aquifer. Therefore, this study investigates the microbial diversity and contamination microbial indicators of groundwater samples with different contaminated types to better understand the contamination in the PRTM. Seventy-six samples were collected between two rivers in the Tang-Dasha River Basin covering 4000 km2 in the PRTM. High-throughput sequencing was employed to determine the samples’ DNA sequences. The samples were divided into four groups: background (B), nitrate contamination (N), organic contamination (O) and organic-nitrate contamination (O_N) based on the cumulative probability distribution and the Chinese groundwater standard levels of NO3−, COD and DO concentrations. Then, the microbial diversity and contamination microbial indicators were studied in the four groups. The results showed that the O group exhibited lower diversity than other groups. Bacteria detected in these four groups covered 531 families, 987 genera, and 1881 species. Taxonomic assignment analysis indicated that Rhodobacter, Vogesella, Sphingobium dominated in the O_N group, N group, and O group, and accounted for 18.05%, 17.74%, 16.45% in each group at genus level, respectively. Furthermore, these three genera were identified as contamination microbial indicators to the three types of contamination, respectively. The results provide a potential molecular microbiological method to identity contamination in shallow groundwater, and established a strong foundation for further investigation and remediation in the PRTM.

Effects of hexavalent chromium on intestinal histology and microbiota in Bufo gargarizans tadpoles

Chromium is detrimental heavy metal pollutants and can enter and affect aquatic organisms. In our experiment, B. gargarizans embryos were chronically exposed in different concentrations of Cr (VI) (0, 13, 104, and 416 μg Cr⁶⁺ L^-1) until reached Gosner stage 38. We measured morphological parameters of the body and intestine of B. gargarizans tadpoles, and examined alteration of intestinal tissue. Furthermore, we analyzed the intestinal microbial community of B. gargarizans tadpoles using 16S rRNA gene amplicon sequencing. Our research demonstrated that Cr (VI) exposure caused alteration of intestinal tissue structure in 416 μg Cr⁶⁺ L^-1 treatment groups. Total body length, body wet weight, intestinal length and wet weight of B. gargarizans tadpoles were significantly declined at 416 μg Cr⁶⁺ L^-1. In addition, 16S rRNA gene sequencing revealed that Cr (VI) exposure significantly altered the intestinal microbiota diversity and composition, and perturbed the community structure of the microbiota. As for the intestinal microbiota, at the phylum level, Fusobacteria significantly changed in all Cr (VI) treated groups. Saccharibacteria and TM6_Dependentiae were detected only in the high dose exposure groups. At the genus level, Aeromonas was significantly decreased in Cr (VI) treated groups. According to the results of functional prediction, Cr (VI) exposure affected metabolism and increased risk of disease by inducing the alterations of intestinal microbiota structure. Taken together, the present study provide a new framework elucidating the toxic effects Cr (VI) exposure on B. gargarizans tadpoles associated with intestinal histology and microbiota.

Arsenic immobilization through regulated ferrolysis in paddy field amendment with bismuth impregnated biochar

Iron minerals are important for arsenic immobilization in paddy fields; however, intensive ferrolysis causes arsenic (As) release. Bismuth-impregnated biochar derived from wheat straw (BiBC) was synthesized to immobilize arsenic by regulating the ferrolysis process in a paddy field. Further X-ray based analysis (XRD and XPS) results demonstrated that crystal particles of bismuth oxide and bismuth oxychloride were loaded on the biochar surface, helped create additional micropores and improved its specific surface area. The bioavailability of As, as determined via (non)specifically adsorbed As, decreased as the amended dosage of BiBC increased, while wheat straw biochar (WBC) resulted in arsenic release. The presence of biochar caused a faster reduction rate of iron oxides; however, BiBC promoted the sequential co-precipitation of iron and arsenic ions. Adsorption kinetic experiments indicated that ferrous ions facilitated precipitation of As on the surface of BiBC. The XRD analysis of soil samples showed BiBC facilitated the formation/stability of FeOOH. Thus, amendment with BiBC regulated ferrolysis to buffer iron leaching, which contributed to arsenic immobilization under flooding conditions. This study demonstrated the feasibility of As immobilization by metal-impregnated biochar in paddy soils.

Gcd Gene Diversity of Quinoprotein Glucose Dehydrogenase in the Sediment of Sancha Lake and Its Response to the Environment

Quinoprotein glucose dehydrogenase (GDH) is the most important enzyme of inorganic phosphorus-dissolving metabolism, catalyzing the oxidation of glucose to gluconic acid. The insoluble phosphate in the sediment is converted into soluble phosphate, facilitating mass reproduction of algae. Therefore, studying the diversity of gcd genes which encode GDH is beneficial to reveal the microbial group that has a significant influence on the eutrophication of water. Taking the eutrophic Sancha Lake sediments as the research object, we acquired samples from six sites in the spring and autumn. A total of 219,778 high-quality sequences were obtained by DNA extraction of microbial groups in sediments, PCR amplification of the gcd gene, and high-throughput sequencing. Six phyla, nine classes, 15 orders, 29 families, 46 genera, and 610 operational taxonomic units (OTUs) were determined, suggesting the high genetic diversity of gcd. Gcd genes came mainly from the genera of Rhizobium (1.63–77.99%), Ensifer (0.13–56.95%), Shinella (0.32–25.49%), and Sinorhizobium (0.16–11.88%) in the phylum of Proteobacteria (25.10–98.85%). The abundance of these dominant gcd-harboring bacteria was higher in the spring than in autumn, suggesting that they have an important effect on the eutrophication of the Sancha Lake. The alpha and beta diversity of gcd genes presented spatial and temporal differences due to different sampling site types and sampling seasons. Pearson correlation analysis and canonical correlation analysis (CCA) showed that the diversity and abundance of gcd genes were significantly correlated with environmental factors such as dissolved oxygen (DO), phosphorus hydrochloride (HCl–P), and dissolved total phosphorus (DTP). OTU composition was significantly correlated with DO, total organic carbon (TOC), and DTP. GDH encoded by gcd genes transformed insoluble phosphate into dissolved phosphate, resulting in the eutrophication of Sancha Lake. The results suggest that gcd genes encoding GDH may play an important role in lake eutrophication.

Responses of soil microbial community structure changes and activities to biochar addition: A meta-analysis

The objective of this study was to investigate responses of soil microbial community structure changes and activities to biochar addition under different biochar characteristics, soil properties, and experiment conditions. A meta-analysis was conducted based on 265 datasets from 49 published studies. Results showed that biochar addition significantly increased the ratios of soil fungi to bacteria (F/B) and the ratios of Gram-positive bacteria to Gram-negative bacteria (G+/G-), and microbial biomass and activities. The enhancement of F/B ratios was most significant with addition of biochars produced at low temperatures to soils with lower pH and nutrients in a long-term condition, which improved ecosystem stability of agricultural soils. The F/B ratios were mainly affected by biochar nutrients, soil nutrients, and soil pH values. Biochar nutrients and structural properties (i.e., surface area and porosity) also played the important role in enhancing G+/G-, total microbial biomass, and activities of bacteria, fungi, and actinomycetes. The G+/G- ratios increased the most with addition of biochars produced with medium temperatures and residue accompanied with fertilizers in dry land (dried farmland) soils. High biochar load greatly improved the total phospholipid fatty acids, and activities of bacteria, fungi, and actinomycetes in fine/coarse, paddy soils, and soils with low nutrients, in turn increased the soil nutrient cycling. In addition, the structural properties of biochars were the most influencing factor to increase total microbial biomass and actinomycete activity. Overall, the enhancement of microbial activities and community structure shifts under biochar addition should promote soil nutrients cycling and carbon sequestration, and improve crop yields.

DNA-SIP Reveals the Diversity of Chemolithoautotrophic Bacteria Inhabiting Three Different Soil Types in Typical Karst Rocky Desertification Ecosystems in Southwest China

Autotrophs that inhabit soils receive less attention than their counterparts in other ecosystems, such as deep-sea and subsurface sediments, due to the low abundance of autotrophs in soils with high organic contents. However, the karst rocky desertification region is a unique ecosystem that may have a low level of organic compounds. Therefore, we propose that karst rocky desertification ecosystems may harbor diverse autotrophic microbial communities. In this study, DNA-SIP was employed to identify the chemolithoautotrophic bacteria inhabiting three soil types (i.e., grass, forest, and agriculture) of the karst rocky desertification ecosystems. The results indicated that potential chemolithoautotrophic population was observed in each soil type, even at different time points after amending ¹³C-NaHCO₃, confirming our hypothesis that diverse autotrophs contribute to the carbon cycle in karst soils. Bacteria, such as Ralstonia, Ochrobactrum, Brevibacterium, Acinetobacter, and Corynebacterium, demonstrated their potential to assimilate inorganic carbon and reduce nitrate or thiosulfate as electron acceptors. Putative mixotrophs were identified by DNA-SIP as well, suggesting the metabolic versatility of soil microbiota. A co-occurrence network further indicated that autotrophs and heterotrophs may form associated communities to sustain the ecosystem function. Our current study revealed the metabolic diversity of autotrophic bacteria in soil habitats and demonstrated the potentially important role of chemoautotrophs in karst rocky desertification ecosystems.

Pyrolysis of attapulgite clay blended with yak dung enhances pasture growth and soil health: Characterization and initial field trials

Recent studies have shown that the pyrolysis of biomass combined with clay can result in both lower cost and increase in plant yields. One of the major sources of nutrients for pasture growth, as well as fuel and building materials in Tibet is yak dung. This paper reports on the initial field testing in a pasture setting in Tibet using yak dung, biochar, and attapulgite clay/yak dung biochars produced at ratios of 10/90 and 50/50 clay to dung. We found that the treatment with attapulgite clay/yak dung (50/50) biochar resulted in the highest pasture yields and grass nutrition quality. We also measured the properties and yields of mixtures of clay/yak dung biochar used in the field trials produced at 400°C and 500°C to help determine a possible optimum final pyrolysis temperature and dung/clay ratio. It was observed that increasing clay content increased carbon stability, overall biochar yield, pore size, carboxyl and ketone/aldehyde functional groups, hematite and ferrous/ferric sulphate/thiosulphate concentration, surface area and magnetic moment. Decreasing clay content resulted in higher pH, CEC, N content and an enhanced ability to accept and donate electrons. The resulting properties were a complex function of both processing temperature and the percentage of clay for the biochars processed at both 400°C and 500°C. It is possible that the increase in yield and nutrient uptake in the field trial is related to the higher concentration of C/O functional groups, higher surface area and pore volume and higher content of Fe/O/S nanoparticles of multiple oxidation state in the 50/50 clay/dung. These properties have been found to significantly increase the abundance of beneficial microorganisms and hence improve the nutrient cycling and availability in soil. Further field trials are required to determine the optimum pyrolysis production conditions and application rate on the abundance of beneficial microorganisms, yields and nutrient quality.