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Corso M, Perreau F, Mouille G, Lepiniec L. Specialized phenolic compounds in seeds: structures, functions, and regulations. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 296:110471. [PMID: 32540001 DOI: 10.1016/j.plantsci.2020.110471] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 03/11/2020] [Accepted: 03/13/2020] [Indexed: 05/24/2023]
Abstract
Plants produce a huge diversity of specialized metabolites (SM) throughout their life cycle that play important physiological and ecological functions. SM can protect plants and seeds against diseases, predators, and abiotic stresses, or support their interactions with beneficial or symbiotic organisms. They also have strong impacts on human nutrition and health. Despite this importance, the biosynthesis and biological functions of most of the SM remain elusive and their diversity and/or quantity have been reduced in most crops during domestication. Seeds present a large number of SM that are important for their physiological, agronomic, nutritional or industrial qualities and hence, provide interesting models for both studying biosynthesis and producing large amounts of specialized metabolites. For instance, phenolics are abundant and widely distributed in seeds. More specifically, flavonoid pathway has been instrumental for understanding environmental or developmental regulations of specialized metabolic pathways, at the molecular and cellular levels. Here, we summarize current knowledge on seed phenolics as model, and discuss how recent progresses in omics approaches could help to further characterize their diversity, regulations, and the underlying molecular mechanisms involved.
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Affiliation(s)
- Massimiliano Corso
- Institut Jean-Pierre Bourgin, Université Paris-Saclay, INRAE, AgroParisTech, 78000, Versailles, France.
| | - François Perreau
- Institut Jean-Pierre Bourgin, Université Paris-Saclay, INRAE, AgroParisTech, 78000, Versailles, France
| | - Grégory Mouille
- Institut Jean-Pierre Bourgin, Université Paris-Saclay, INRAE, AgroParisTech, 78000, Versailles, France
| | - Loïc Lepiniec
- Institut Jean-Pierre Bourgin, Université Paris-Saclay, INRAE, AgroParisTech, 78000, Versailles, France
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52
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Serre NBC, Sarthou M, Gigarel O, Figuet S, Corso M, Choulet J, Rofidal V, Alban C, Santoni V, Bourguignon J, Verbruggen N, Ravanel S. Protein lysine methylation contributes to modulating the response of sensitive and tolerant Arabidopsis species to cadmium stress. PLANT, CELL & ENVIRONMENT 2020; 43:760-774. [PMID: 31759334 DOI: 10.1111/pce.13692] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 11/04/2019] [Accepted: 11/19/2019] [Indexed: 05/10/2023]
Abstract
The mechanisms underlying the response and adaptation of plants to excess of trace elements are not fully described. Here, we analysed the importance of protein lysine methylation for plants to cope with cadmium. We analysed the effect of cadmium on lysine-methylated proteins and protein lysine methyltransferases (KMTs) in two cadmium-sensitive species, Arabidopsis thaliana and A. lyrata, and in three populations of A. halleri with contrasting cadmium accumulation and tolerance traits. We showed that some proteins are differentially methylated at lysine residues in response to Cd and that a few genes coding KMTs are regulated by cadmium. Also, we showed that 9 out of 23 A. thaliana mutants disrupted in KMT genes have a tolerance to cadmium that is significantly different from that of wild-type seedlings. We further characterized two of these mutants, one was knocked out in the calmodulin lysine methyltransferase gene and displayed increased tolerance to cadmium, and the other was interrupted in a KMT gene of unknown function and showed a decreased capacity to cope with cadmium. Together, our results showed that lysine methylation of non-histone proteins is impacted by cadmium and that several methylation events are important for modulating the response of Arabidopsis plants to cadmium stress.
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Affiliation(s)
- Nelson B C Serre
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
| | - Manon Sarthou
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
| | - Océane Gigarel
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
| | - Sylvie Figuet
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
| | - Massimiliano Corso
- Laboratory of Plant Physiology and Molecular Genetics, Université Libre de Bruxelles, Brussels, Belgium
| | - Justine Choulet
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
| | - Valérie Rofidal
- Biochimie et Physiologie Moléculaire des Plantes, Institut de Biologie Intégrative des Plantes, UMR 5004 CNRS/UMR 0386 INRA/Montpellier SupAgro/Université Montpellier, Montpellier, Cedex 2, France
| | - Claude Alban
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
| | - Véronique Santoni
- Biochimie et Physiologie Moléculaire des Plantes, Institut de Biologie Intégrative des Plantes, UMR 5004 CNRS/UMR 0386 INRA/Montpellier SupAgro/Université Montpellier, Montpellier, Cedex 2, France
| | | | - Nathalie Verbruggen
- Laboratory of Plant Physiology and Molecular Genetics, Université Libre de Bruxelles, Brussels, Belgium
| | - Stéphane Ravanel
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, Grenoble, France
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53
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Tao Q, Zhao J, Li J, Liu Y, Luo J, Yuan S, Li B, Li Q, Xu Q, Yu X, Huang H, Li T, Wang C. Unique root exudate tartaric acid enhanced cadmium mobilization and uptake in Cd-hyperaccumulator Sedum alfredii. JOURNAL OF HAZARDOUS MATERIALS 2020; 383:121177. [PMID: 31648122 DOI: 10.1016/j.jhazmat.2019.121177] [Citation(s) in RCA: 70] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 09/03/2019] [Accepted: 09/05/2019] [Indexed: 06/10/2023]
Abstract
Low molecular weight organic acids (LMWOA) involved in heavy metal tolerance, translocation, and accumulation in plants. However, underlying mechanism of LMWOA secretion in metal mobilization and uptake in hyperaccumulator still need to be identified. In this study, a 13C labeling rhizobox was designed to investigate the composition and distribution of LMWOA in the rhizosphere of S. alfredii. The result showed that about 2.30%, 2.25% and 2.35% of the assimilated 13C was incorporated into oxalic acid, malic acid, and tartaric acid in rhizosphere of S. alfredii after 13CO2 assimilation, respectively. Oxalic acid, malic acid, and tartaric acid were the predominant LMWOA in rhizosphere soil solution of hyperaccumulating ecotype (HE) S. alfredii, however, almost no tartaric acid was detected for non-hyperaccumulating ecotype (NHE). Tartaric acid was identified as the unique root exudate from HE S. alfredii which was mainly distributed within the range of rhizosphere 0-6 mm. Tartaric acid significantly increased the solubility of four Cd minerals. HE S. alfredii treated with tartrate + CdCO3 had higher Cd contents and larger biomass than CdCO3 treatment. Cadmium accumulation in HE S. alfredii was promoted by the exudation of tartaric acid, which was highly efficient in Cd solubilization due to the formation of soluble Cd-tartrate complexes.
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Affiliation(s)
- Qi Tao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Junwen Zhao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Jinxing Li
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310029, China
| | - Yuankun Liu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310029, China
| | - Jipeng Luo
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310029, China
| | - Shu Yuan
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Bing Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiquan Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiang Xu
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Xiaofang Yu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu 611130, China
| | - Huagang Huang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Tingqiang Li
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310029, China.
| | - Changquan Wang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China.
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Corso M, García de la Torre VS. Biomolecular approaches to understanding metal tolerance and hyperaccumulation in plants. Metallomics 2020; 12:840-859. [DOI: 10.1039/d0mt00043d] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Trace metal elements are essential for plant growth but become toxic at high concentrations, while some non-essential elements, such as Cd and As, show toxicity even in traces.
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Affiliation(s)
- Massimiliano Corso
- Institut Jean-Pierre Bourgin
- Université Paris-Saclay
- INRAE
- AgroParisTech
- 78000 Versailles
| | - Vanesa S. García de la Torre
- Molecular Genetics and Physiology of Plants
- Faculty of Biology and Biotechnology
- Ruhr University Bochum
- 44801 Bochum
- Germany
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55
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Ceasar SA, Lekeux G, Motte P, Xiao Z, Galleni M, Hanikenne M. di-Cysteine Residues of the Arabidopsis thaliana HMA4 C-Terminus Are Only Partially Required for Cadmium Transport. FRONTIERS IN PLANT SCIENCE 2020; 11:560. [PMID: 32528485 PMCID: PMC7264368 DOI: 10.3389/fpls.2020.00560] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 04/15/2020] [Indexed: 05/12/2023]
Abstract
Cadmium (Cd) is highly toxic to the environment and humans. Plants are capable of absorbing Cd from the soil and of transporting part of this Cd to their shoot tissues. In Arabidopsis, the plasma membrane Heavy Metal ATPase 4 (HMA4) transporter mediates Cd xylem loading for export to shoots, in addition to zinc (Zn). A recent study showed that di-Cys motifs present in the HMA4 C-terminal extension (AtHMA4c) are essential for high-affinity Zn binding and transport in planta. In this study, we have characterized the role of the AtHMA4c di-Cys motifs in Cd transport in planta and in Cd-binding in vitro. In contrast to the case for Zn, the di-Cys motifs seem to be partly dispensable for Cd transport as evidenced by limited variation in Cd accumulation in shoot tissues of hma2hma4 double mutant plants expressing native or di-Cys mutated variants of AtHMA4. Expression analysis of metal homeostasis marker genes, such as AtIRT1, excluded that maintained Cd accumulation in shoot tissues was the result of increased Cd uptake by roots. In vitro Cd-binding assays further revealed that mutating di-Cys motifs in AtHMA4c had a more limited impact on Cd-binding than it has on Zn-binding. The contributions of the AtHMA4 C-terminal domain to metal transport and binding therefore differ for Zn and Cd. Our data suggest that it is possible to identify HMA4 variants that discriminate Zn and Cd for transport.
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Affiliation(s)
- Stanislaus Antony Ceasar
- InBioS – PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, Belgium
- InBioS – Center for Protein Engineering, Biological Macromolecules, University of Liège, Liège, Belgium
| | - Gilles Lekeux
- InBioS – PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, Belgium
- InBioS – Center for Protein Engineering, Biological Macromolecules, University of Liège, Liège, Belgium
| | - Patrick Motte
- InBioS – PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, Belgium
| | - Zhiguang Xiao
- Melbourne Dementia Research Centre, Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Parkville, VIC, Australia
| | - Moreno Galleni
- InBioS – Center for Protein Engineering, Biological Macromolecules, University of Liège, Liège, Belgium
| | - Marc Hanikenne
- InBioS – PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, Belgium
- *Correspondence: Marc Hanikenne,
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56
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Kishor PBK, Suravajhala R, Rajasheker G, Marka N, Shridhar KK, Dhulala D, Scinthia KP, Divya K, Doma M, Edupuganti S, Suravajhala P, Polavarapu R. Lysine, Lysine-Rich, Serine, and Serine-Rich Proteins: Link Between Metabolism, Development, and Abiotic Stress Tolerance and the Role of ncRNAs in Their Regulation. FRONTIERS IN PLANT SCIENCE 2020; 11:546213. [PMID: 33343588 PMCID: PMC7744598 DOI: 10.3389/fpls.2020.546213] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 10/30/2020] [Indexed: 05/06/2023]
Abstract
Lysine (Lys) is indispensable nutritionally, and its levels in plants are modulated by both transcriptional and post-transcriptional control during plant ontogeny. Animal glutamate receptor homologs have been detected in plants, which may participate in several plant processes through the Lys catabolic products. Interestingly, a connection between Lys and serotonin metabolism has been established recently in rice. 2-Aminoadipate, a catabolic product of Lys appears to play a critical role between serotonin accumulation and the color of rice endosperm/grain. It has also been shown that expression of some lysine-methylated proteins and genes encoding lysine-methyltransferases (KMTs) are regulated by cadmium even as it is known that Lys biosynthesis and its degradation are modulated by novel mechanisms. Three complex pathways co-exist in plants for serine (Ser) biosynthesis, and the relative preponderance of each pathway in relation to plant development or abiotic stress tolerance are being unfolded slowly. But the phosphorylated pathway of L-Ser biosynthesis (PPSB) appears to play critical roles and is essential in plant metabolism and development. Ser, which participates indirectly in purine and pyrimidine biosynthesis and plays a pivotal role in plant metabolism and signaling. Also, L-Ser has been implicated in plant responses to both biotic and abiotic stresses. A large body of information implicates Lys-rich and serine/arginine-rich (SR) proteins in a very wide array of abiotic stresses. Interestingly, a link exists between Lys-rich K-segment and stress tolerance levels. It is of interest to note that abiotic stresses largely influence the expression patterns of SR proteins and also the alternative splicing (AS) patterns. We have checked if any lncRNAs form a cohort of differentially expressed genes from the publicly available PPSB, sequence read archives of NCBI GenBank. Finally, we discuss the link between Lys and Ser synthesis, catabolism, Lys-proteins, and SR proteins during plant development and their myriad roles in response to abiotic stresses.
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Affiliation(s)
- P. B. Kavi Kishor
- Department of Biotechnology, Vignan’s Foundation for Science, Technology and Research (Deemed to be University), Guntur, India
- *Correspondence: P. B. Kavi Kishor,
| | | | | | - Nagaraju Marka
- Biochemistry Division, National Institute of Nutrition-ICMR, Hyderabad, India
| | | | - Divya Dhulala
- Department of Genetics, Osmania University, Hyderabad, India
| | | | - Kummari Divya
- Department of Genetics, Osmania University, Hyderabad, India
| | - Madhavi Doma
- Department of Genetics, Osmania University, Hyderabad, India
| | | | - Prashanth Suravajhala
- Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, Jaipur, India
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57
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Zhang ZH, Zhou T, Tang TJ, Song HX, Guan CY, Huang JY, Hua YP. A multiomics approach reveals the pivotal role of subcellular reallocation in determining rapeseed resistance to cadmium toxicity. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:5437-5455. [PMID: 31232451 PMCID: PMC6793439 DOI: 10.1093/jxb/erz295] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Accepted: 06/13/2019] [Indexed: 05/04/2023]
Abstract
Oilseed rape (Brassica napus) has great potential for phytoremediation of cadmium (Cd)-polluted soils due to its large plant biomass production and strong metal accumulation. Enhanced plant Cd resistance (PCR) is a crucial prerequisite for phytoremediation through hyper-accumulation of excess Cd. However, the complexity of the allotetraploid genome of rapeseed hinders our understanding of PCR. To explore rapeseed Cd-resistance mechanisms, we examined two genotypes, 'ZS11' (Cd-resistant) and 'W10' (Cd-sensitive), that exhibit contrasting PCR while having similar tissue Cd concentrations, and characterized their different fingerprints in terms of plant morphophysiology (electron microscopy), ion abundance (inductively coupled plasma mass spectrometry), DNA variation (whole-genome resequencing), transcriptomics (high-throughput mRNA sequencing), and metabolomics (ultra-high performance liquid chromatography-mass spectrometry). Fine isolation of cell components combined with ionomics revealed that more Cd accumulated in the shoot vacuoles and root pectins of the resistant genotype than in the sensitive one. Genome and transcriptome sequencing identified numerous DNA variants and differentially expressed genes involved in pectin modification, ion binding, and compartmentalization. Transcriptomics-assisted gene co-expression networks characterized BnaCn.ABCC3 and BnaA8.PME3 as the central members involved in the determination of rapeseed PCR. High-resolution metabolic profiles revealed greater accumulation of shoot Cd chelates, and stronger biosynthesis and higher demethylation of root pectins in the resistant genotype than in the sensitive one. Our comprehensive examination using a multiomics approach has greatly improved our understanding of the role of subcellular reallocation of Cd in the determination of PCR.
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Affiliation(s)
- Zhen-Hua Zhang
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
| | - Ting Zhou
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
| | - Tian-Jiao Tang
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
| | - Hai-Xing Song
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
| | - Chun-Yun Guan
- National Center of Oilseed Crop Improvement, Hunan Branch, Changsha, China
| | - Jin-Yong Huang
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Ying-Peng Hua
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
- Correspondence:
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58
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Clemens S. Metal ligands in micronutrient acquisition and homeostasis. PLANT, CELL & ENVIRONMENT 2019; 42:2902-2912. [PMID: 31350913 DOI: 10.1111/pce.13627] [Citation(s) in RCA: 67] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 07/22/2019] [Accepted: 07/23/2019] [Indexed: 05/09/2023]
Abstract
Acquisition and homeostasis of micronutrients such as iron (Fe) and zinc (Zn) pose specific challenges. Poor solubility and high reactivity require controlled synthesis and supply of ligands to complex these metals extracellularly and intracellularly. Cytosolic labile pools represent only a minute fraction of the total cellular content. Several low-molecular-weight ligands are known in plants, including sulfur ligands (cysteine and peptides), nitrogen/oxygen ligands (S-adenosyl-l-methionine-derived molecules and histidine), and oxygen ligands (phenolics and organic acids). Some ligands are secreted into the extracellular space and influence the phytoavailability of metal ions. A second principal function is the intracellular buffering of micronutrients as well as the facilitation of long-distance transport in xylem and phloem. Furthermore, low-molecular-weight ligands are involved in the storage of metals, predominantly in vacuoles. A detailed molecular understanding is hampered by technical limitations, in particular the difficulty to detect and quantify cellular metal-ligand complexes. More, but still too little, is known about ligand synthesis and the transport across membranes, either with or without a complexed metal. Metal ligands have an immediate impact on human well-being. Engineering metal ligand synthesis and distribution in crops has tremendous potential to improve the nutritional quality of food and to tackle major human health risks.
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Affiliation(s)
- Stephan Clemens
- Department of Plant Physiology and Bayreuth Center of Ecology and Environmental Research, University of Bayreuth, Universitätsstrasse 30, 95447, Bayreuth, Germany
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59
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Cui G, Ai S, Chen K, Wang X. Arbuscular mycorrhiza augments cadmium tolerance in soybean by altering accumulation and partitioning of nutrient elements, and related gene expression. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 171:231-239. [PMID: 30612010 DOI: 10.1016/j.ecoenv.2018.12.093] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Revised: 11/29/2018] [Accepted: 12/27/2018] [Indexed: 05/08/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi can protect plants against cadmium (Cd) stress, and are the most prominent symbiotic fungi for contribution to phytoremediation. However, the tolerance mechanism for AM symbiosis on Cd toxicity still remains unclear, especially the related molecular mechanisms. In this study, different Cd treatments were applied to two soybean genotypes with different Cd tolerance in the presence or absence of AM fungal inoculation. The results showed that Cd addition obviously decreased AM colonization. AM symbiosis significantly increased plant dry weight, root growth, and P acquisition in Cd-tolerant HX3 genotype at Cd addition treatments. The effectiveness was associated with a concomitant increased expression of the AM inducible phosphate (Pi) transporter genes GmPT8, GmPT9, GmPT10, and upregulated expression of P-type heavy metal ATPase gene GmHMA19. Additionally, AM fungal inoculation effectively impacted the partitioning of Mg, Cu and Zn, including increased Mg, and decreased Cu and Zn relative concentrations in shoots of Cd tolerant HX3. Taken together, these results suggest that AM symbiosis can alleviate Cd toxicity in soybean through enhanced P nutrition, up-regulated expression of AM inducible GmPTs and GmHMA19, as well as, the alteration of the partitioning of essential nutrient elements.
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Affiliation(s)
- Guangjuan Cui
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Root Biology Center, South China Agricultural University, Guangzhou 510642, China
| | - Shaoying Ai
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
| | - Kang Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Root Biology Center, South China Agricultural University, Guangzhou 510642, China
| | - Xiurong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Root Biology Center, South China Agricultural University, Guangzhou 510642, China.
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60
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Galiová MV, Száková J, Prokeš L, Čadková Z, Coufalík P, Kanický V, Otruba V, Tlustoš P. Variability of trace element distribution in Noccaea spp., Arabidopsis spp., and Thlaspi arvense leaves: the role of plant species and element accumulation ability. ENVIRONMENTAL MONITORING AND ASSESSMENT 2019; 191:181. [PMID: 30798372 DOI: 10.1007/s10661-019-7331-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Accepted: 02/15/2019] [Indexed: 06/09/2023]
Abstract
Laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) was applied for the determination of Cd and Zn distributions within the leaves of Cd- and Zn-hyperaccumulating plants, Noccaea caerulescens, N. praecox, and Arabidopsis halleri, in contrast to nonaccumulator species, Thlaspi arvense and A. thaliana. The elemental mapping of the selected leaf area was accomplished via line scans with a 110-μm-diameter laser beam at a 37-μm s-1 scan speed and repetition rate of 10 Hz. The lines were spaced 180 μm apart and ablated at an energy density of 2 J cm-2. The elemental imaging clearly confirmed that Cd was predominantly distributed within the parenchyma of the T. arvense, whereas in the Noccaea spp. and A. halleri, the highest intensity Cd signal was observed in the veins of the leaves. For Zn, higher intensities were observed in the veins for all the plant species except for A. thaliana. Close relationships between Zn and Ca were identified for the Noccaea spp. leaves. These relationships were not confirmed for A. halleri. Significant correlations were also proved between the Cd and Zn distribution in A. halleri, but not for the Noccaea spp. For both T. arvense and A. thaliana, no relevant significant relationship for the interpretation of the results was observed. Thus, the LA-ICP-MS imaging is proved as a relevant technique for the description and understanding of the elements in hyperaccumulating or highly accumulating plant species, although its sensitivity for the natural element contents in nonaccumulator plant species is still insufficient.
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Affiliation(s)
- Michaela Vašinová Galiová
- Department of Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, 611 37, Brno, Czech Republic
- Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
| | - Jiřina Száková
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Science Prague, Kamýcká 129, 165 21, Prague-Suchdol, Czech Republic.
| | - Lubomír Prokeš
- Department of Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, 611 37, Brno, Czech Republic
| | - Zuzana Čadková
- Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Science Prague, Kamýcká 129, 165 21, Prague-Suchdol, Czech Republic
| | - Pavel Coufalík
- Department of Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, 611 37, Brno, Czech Republic
- Institute of Analytical Chemistry, The Czech Academy of Sciences, v.v.i., Veveří 97, 602 00, Brno, Czech Republic
| | - Viktor Kanický
- Department of Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, 611 37, Brno, Czech Republic
- Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
| | - Vítězslav Otruba
- Department of Chemistry, Faculty of Science, Masaryk University, Kotlářská 2, 611 37, Brno, Czech Republic
- Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
| | - Pavel Tlustoš
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Science Prague, Kamýcká 129, 165 21, Prague-Suchdol, Czech Republic
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61
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Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri. Heredity (Edinb) 2019; 122:877-892. [PMID: 30670845 DOI: 10.1038/s41437-019-0184-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Revised: 12/01/2018] [Accepted: 12/12/2018] [Indexed: 12/13/2022] Open
Abstract
Anthropogenic activities are among the main drivers of global change and result in drastic habitat modifications, which represent strong evolutionary challenges for biological species that can either migrate, adapt, or disappear. In this context, understanding the genetics of adaptive traits is a prerequisite to enable long-term maintenance of populations under strong environmental constraints. To examine these processes, a QTL approach was developed here using the pseudometallophyte Arabidopsis halleri, which displays among-population adaptive divergence for tolerance to metallic pollution in soils. An F2 progeny was obtained by crossing individuals from metallicolous and non-metallicolous populations from Italian Alps, where intense metallurgic activities have created strong landscape heterogeneity. Then, we combined genome de novo assembly and genome resequencing of parental genotypes to obtain single-nucleotide polymorphism markers and achieve high-throughput genotyping of the progeny. QTL analysis was performed using growth parameters and photosynthetic yield to assess zinc tolerance levels. One major QTL was identified for photosynthetic yield. It explained about 27% of the phenotypic variance. Functional annotation of the QTL and gene expression analyses highlighted putative candidate genes. Our study represents a successful approach combining evolutionary genetics and advanced molecular tools, helping to better understand how a species can face new selective pressures of anthropogenic origin.
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Szopiński M, Sitko K, Gieroń Ż, Rusinowski S, Corso M, Hermans C, Verbruggen N, Małkowski E. Toxic Effects of Cd and Zn on the Photosynthetic Apparatus of the Arabidopsis halleri and Arabidopsis arenosa Pseudo-Metallophytes. FRONTIERS IN PLANT SCIENCE 2019; 10:748. [PMID: 31244873 PMCID: PMC6563759 DOI: 10.3389/fpls.2019.00748] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Accepted: 05/21/2019] [Indexed: 05/03/2023]
Abstract
Hyperaccumulation and hypertolerance of Trace Metal Elements (TME) like Cd and Zn are highly variable in pseudo-metallophytes species. In this study we compared the impact of high Cd or Zn concentration on the photosynthetic apparatus of the Arabidopsis arenosa and Arabidopsis halleri pseudo-metallophytes growing on the same contaminated site in Piekary Slaskie in southern Poland. Plants were grown in hydroponic culture for 6 weeks, and then treated with 1.0 mM Cd or 5.0 mM Zn for 5 days. Chlorophyll a fluorescence and pigment content were measured after 0, 1, 2, 3, 4, and 5 days in plants grown in control and exposed to Cd or Zn treatments. Moreover, the effect of TME excess on the level of oxidative stress and gas-exchange parameters were investigated. In both plant species, exposure to high Cd or Zn induced a decrease in chlorophyll and an increase in anthocyanin contents in leaves compared to the control condition. After 5 days Cd treatment, energy absorbance, trapped energy flux and the percentage of active reaction centers decreased in both species. However, the dissipated energy flux in the leaves of A. arenosa was smaller than in A. halleri. Zn treatment had more toxic effect than Cd on electron transport in A. halleri compared with A. arenosa. A. arenosa plants treated with Zn excess did not react as strongly as in the Cd treatment and a decrease only in electron transport flux and percentage of active reaction centers compared with control was observed. The two species showed contrasting Cd and Zn accumulation. Cd concentration was almost 3-fold higher in A. arenosa leaves than in A. halleri. On the opposite, A. halleri leaves contained 3-fold higher Zn concentration than A. arenosa. In short, our results showed that the two Arabidopsis metallicolous populations are resistant to high Cd or Zn concentration, however, the photosynthetic apparatus responded differently to the toxic effects.
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Affiliation(s)
- Michał Szopiński
- Department of Plant Physiology, University of Silesia in Katowice, Katowice, Poland
- *Correspondence: Michał Szopiński
| | - Krzysztof Sitko
- Department of Plant Physiology, University of Silesia in Katowice, Katowice, Poland
| | - Żaneta Gieroń
- Department of Plant Physiology, University of Silesia in Katowice, Katowice, Poland
| | | | - Massimiliano Corso
- Laboratoire de Physiologie et de Génétique Moléculaire des Plantes, Université Libre de Bruxelles, Brussels, Belgium
| | - Christian Hermans
- Laboratoire de Physiologie et de Génétique Moléculaire des Plantes, Université Libre de Bruxelles, Brussels, Belgium
| | - Nathalie Verbruggen
- Laboratoire de Physiologie et de Génétique Moléculaire des Plantes, Université Libre de Bruxelles, Brussels, Belgium
| | - Eugeniusz Małkowski
- Department of Plant Physiology, University of Silesia in Katowice, Katowice, Poland
- Eugeniusz Małkowski
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63
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Sailer C, Babst-Kostecka A, Fischer MC, Zoller S, Widmer A, Vollenweider P, Gugerli F, Rellstab C. Transmembrane transport and stress response genes play an important role in adaptation of Arabidopsis halleri to metalliferous soils. Sci Rep 2018; 8:16085. [PMID: 30382172 PMCID: PMC6208402 DOI: 10.1038/s41598-018-33938-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Accepted: 10/09/2018] [Indexed: 12/17/2022] Open
Abstract
When plants adapt to local environments, strong signatures of selection are expected in the genome, particularly in high-stress environments such as trace metal element enriched (metalliferous) soils. Using Arabidopsis halleri, a model species for metal homeostasis and adaptation to extreme environments, we identifid genes, gene variants, and pathways that are associated with soil properties and may thus contribute to adaptation to high concentrations of trace metal elements. We analysed whole-genome Pool-seq data from two metallicolous (from metalliferous soils) and two non-metallicolous populations (in total 119 individuals) and associated allele frequencies of the identified single-nucleotide polymorphisms (SNPs) with soil variables measured on site. Additionally, we accounted for polygenic adaptation by searching for gene pathways showing enrichment of signatures of selection. Out of >2.5 million SNPs, we identified 57 SNPs in 19 genes that were significantly associated with soil variables and are members of three enriched pathways. At least three of these candidate genes and pathways are involved in transmembrane transport and/or associated with responses to various stresses such as oxidative stress. We conclude that both allocation and detoxification processes play a crucial role in A. halleri for coping with these unfavourable conditions.
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Affiliation(s)
- Christian Sailer
- WSL Swiss Federal Research Institute, Birmensdorf, 8903, Switzerland.
- ETH Zürich, Institute of Integrative Biology, Zürich, 8092, Switzerland.
| | | | - Martin C Fischer
- ETH Zürich, Institute of Integrative Biology, Zürich, 8092, Switzerland
| | - Stefan Zoller
- ETH Zürich, Genetic Diversity Centre, Zürich, 8092, Switzerland
| | - Alex Widmer
- ETH Zürich, Institute of Integrative Biology, Zürich, 8092, Switzerland
| | | | - Felix Gugerli
- WSL Swiss Federal Research Institute, Birmensdorf, 8903, Switzerland
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64
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Muszyńska E, Labudda M, Różańska E, Hanus-Fajerska E, Znojek E. Heavy metal tolerance in contrasting ecotypes of Alyssum montanum. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 161:305-317. [PMID: 29890432 DOI: 10.1016/j.ecoenv.2018.05.075] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2018] [Revised: 05/08/2018] [Accepted: 05/25/2018] [Indexed: 05/11/2023]
Abstract
The response of metallicolous (M) and nonmetallicolous (NM) Alyssum montanum ecotypes to multi-metal stress was investigated under in vitro condition and compared in this study. Shoot cultures were simultaneously treated with 0.7 mM ZnSO4, 3.0 μM Pb(NO3)2 and 16.4 μM CdCl2 for 8 weeks and evaluated for their morphogenetic and ultrastructural reaction, growth tolerance as well as ability to Zn, Pb, and Cd uptake. Moreover, tissue localization and concentrations of antioxidant compounds were determined in order to elucidate the potential role of ROS-scavenging machinery in plant tolerance to metal toxicity. The results clearly demonstrated that M specimens treated with heavy metals showed less phytotoxic symptoms and low level of lipid peroxidation than reference NM one. The enhanced tolerance of M ecotype resulted from heavy metals detoxification in trichomes and intracellular leaf compartments as well as balanced ROS accumulation. The inactivation of ROS in M plants was based on peroxidase-flavonoid system, while in NM plants such relationship was not detected and amounts of antioxidant enzymes or phenolic compounds was comparable to untreated specimens or decreased significantly. Considering the procumbent growth of such hemicryptophyte which reproduce effectively in the presence of heavy metals but is characterized by low biomass production, it is proposed to exploit M ecotype of A. montanum in revegetation schemes of polluted calamine wastes to provide the prompt stabilization of areas prone to erosion.
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Affiliation(s)
- Ewa Muszyńska
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, Building 37, 02-776 Warsaw, Poland.
| | - Mateusz Labudda
- Department of Biochemistry, Faculty of Agriculture and Biology, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, Building 37, 02-776 Warsaw, Poland
| | - Elżbieta Różańska
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, Building 37, 02-776 Warsaw, Poland
| | - Ewa Hanus-Fajerska
- Institute of Plant Biology and Biotechnology, University of Agriculture, Al. 29 Listopada 54, 31-425 Krakow, Poland
| | - Ewa Znojek
- Department of Botany, Faculty of Agriculture and Biology, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, Building 37, 02-776 Warsaw, Poland
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65
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Ahmadi H, Corso M, Weber M, Verbruggen N, Clemens S. CAX1 suppresses Cd-induced generation of reactive oxygen species in Arabidopsis halleri. PLANT, CELL & ENVIRONMENT 2018; 41:2435-2448. [PMID: 29879753 DOI: 10.1111/pce.13362] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Revised: 04/12/2018] [Accepted: 05/25/2018] [Indexed: 05/11/2023]
Abstract
The molecular analysis of metal hyperaccumulation in species such as Arabidopsis halleri offers the chance to gain insights into metal homeostasis and into the evolution of adaptation to extreme habitats. A prerequisite of metal hyperaccumulation is metal hypertolerance. Genetic analysis of a backcross population derived from Arabidopsis lyrata × A. halleri crosses revealed three quantitative trait loci for Cd hypertolerance. A candidate gene for Cdtol2 is AhCAX1, encoding a vacuolar Ca2+ /H+ antiporter. We developed a method for the transformation of vegetatively propagated A. halleri plants and generated AhCAX1-silenced lines. Upon Cd2+ exposure, several-fold higher accumulation of reactive oxygen species (ROS) was detectable in roots of AhCAX1-silenced plants. In accordance with the dependence of Cdtol2 on external Ca2+ concentration, this phenotype was exclusively observed in low Ca2+ conditions. The effects of external Ca2+ on Cd accumulation cannot explain the phenotype as they were not influenced by the genotype. Our data strongly support the hypothesis that higher expression of CAX1 in A. halleri relative to other Arabidopsis species represents a Cd hypertolerance factor. We propose a function of AhCAX1 in preventing a positive feedback loop of Cd-elicited ROS production triggering further Ca2+ -dependent ROS accumulation.
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Affiliation(s)
- Hassan Ahmadi
- University of Bayreuth, Department of Plant Physiology, and Bayreuth Center of Ecology and Environmental Research, Bayreuth, Germany
| | - Massimiliano Corso
- Université Libre de Bruxelles, Laboratory of Plant Physiology and Molecular Genetics, Brussels, Belgium
| | - Michael Weber
- University of Bayreuth, Department of Plant Physiology, and Bayreuth Center of Ecology and Environmental Research, Bayreuth, Germany
| | - Nathalie Verbruggen
- Université Libre de Bruxelles, Laboratory of Plant Physiology and Molecular Genetics, Brussels, Belgium
| | - Stephan Clemens
- University of Bayreuth, Department of Plant Physiology, and Bayreuth Center of Ecology and Environmental Research, Bayreuth, Germany
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66
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Schvartzman MS, Corso M, Fataftah N, Scheepers M, Nouet C, Bosman B, Carnol M, Motte P, Verbruggen N, Hanikenne M. Adaptation to high zinc depends on distinct mechanisms in metallicolous populations of Arabidopsis halleri. THE NEW PHYTOLOGIST 2018; 218:269-282. [PMID: 29292833 DOI: 10.1111/nph.14949] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Accepted: 11/14/2017] [Indexed: 05/06/2023]
Abstract
Zinc (Zn) hyperaccumulation and hypertolerance are highly variable traits in Arabidopsis halleri. Metallicolous populations have evolved from nearby nonmetallicolous populations in multiple independent adaptation events. To determine whether these events resulted in similar or divergent adaptive strategies to high soil Zn concentrations, we compared two A. halleri metallicolous populations from distant genetic units in Europe (Poland (PL22) and Italy (I16)). The ionomic (Inductively Coupled Plasma Atomic Emission Spectroscopy (ICP-AES)) and transcriptomic (RNA sequencing (RNA-Seq)) responses to growth at 5 and 150 μM Zn were analyzed in root and shoot tissues to examine the contribution of the geographic origin and treatment to variation among populations. These analyses were enabled by the generation of a reference A. halleri transcriptome assembly. The genetic unit accounted for the largest variation in the gene expression profile, whereas the two populations had contrasting Zn accumulation phenotypes and shared little common response to the Zn treatment. The PL22 population displayed an iron deficiency response at high Zn in roots and shoots, which may account for higher Zn accumulation. By contrast, I16, originating from a highly Zn-contaminated soil, strongly responded to control conditions. Our data suggest that distinct mechanisms support adaptation to high Zn in soils among A. halleri metallicolous populations.
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Affiliation(s)
- M Sol Schvartzman
- InBioS-PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, B-4000, Belgium
| | - Massimiliano Corso
- Physiology and Plant Molecular Genetics, Free University of Brussels, Brussels, 1050, Belgium
| | - Nazeer Fataftah
- InBioS-PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, B-4000, Belgium
| | - Maxime Scheepers
- InBioS-PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, B-4000, Belgium
| | - Cécile Nouet
- InBioS-PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, B-4000, Belgium
| | - Bernard Bosman
- Laboratory of Plant and Microbial Ecology, Department of Biology, Ecology and Evolution, University of Liège, Liège, B-4000, Belgium
| | - Monique Carnol
- Laboratory of Plant and Microbial Ecology, Department of Biology, Ecology and Evolution, University of Liège, Liège, B-4000, Belgium
| | - Patrick Motte
- InBioS-PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, B-4000, Belgium
| | - Nathalie Verbruggen
- Physiology and Plant Molecular Genetics, Free University of Brussels, Brussels, 1050, Belgium
| | - Marc Hanikenne
- InBioS-PhytoSystems, Functional Genomics and Plant Molecular Imaging, University of Liège, Liège, B-4000, Belgium
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