51
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Blagojevic V, Blagojevic VA, Koyanagi GK, Bohme DK. Relativistic Effects in the Ligation of Atomic Coinage Metal Cations with O 2 and C 6H 6: Anomalous Formation of Relativistic Mono- and Bis-adducts with Au . JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2022; 33:1419-1426. [PMID: 35533366 DOI: 10.1021/jasms.2c00075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The interaction of the atomic coinage metal cations Cu+, Ag+, and Au+ with O2, a weak ligand, and C6H6, a strong ligand, was investigated with measurements of rate coefficients of ligation and quantum-chemical computations of ligation energies with an eye on relativistic effects going down the periodic table. Strong "third row enhancements" were observed for both the rate coefficients of ligation and ligation energies with the O2 ligand and for the formation of both the mono- and bis-adducts of M+ and the monoadduct of M+(C6H6). The computations revealed that the third-row enhancement in the ligation energy is attributable to a relativistic increase in the ligation energy. This means that rate coefficient measurements down the periodic table for the ligation of coinage metal cations with O2 provide a probe of the relativistic effect in ligation reactions, as expected from the known dependence of the rate coefficient of ligation on the ligation energy. The much stronger benzene ligand was observed to ligate the atomic coinage metal cations with nearly 100% efficiency so that there is no, or only slightly, visible third-row enhancement despite the strong relativistic effect in the binding energy that is revealed by the calculations. Relativistic effects contribute substantially to the extraordinary stability against deligation of all the observed mono- and bis-adducts of Au+ relative to Ag+, truly a "third-row enhancement".
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52
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Bruder F, Franzke YJ, Weigend F. Paramagnetic NMR Shielding Tensors Based on Scalar Exact Two-Component and Spin-Orbit Perturbation Theory. J Phys Chem A 2022; 126:5050-5069. [PMID: 35857421 DOI: 10.1021/acs.jpca.2c03579] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The temperature-dependent Fermi-contact and pseudocontact terms are important contributions to the paramagnetic NMR shielding tensor. Herein, we augment the scalar-relativistic (local) exact two-component (X2C) framework with spin-orbit perturbation theory including the screened nuclear spin-orbit correction for the EPR hyperfine coupling and g tensor to compute these temperature-dependent terms. The accuracy of this perturbative ansatz is assessed with the self-consistent spin-orbit two-component and four-component treatments serving as reference. This shows that the Fermi-contact and pseudocontact interaction is sufficiently described for paramagnetic NMR shifts; however, larger deviations are found for the EPR spectra and the principle components of the EPR properties of heavy elements. The impact of the perturbative treatment is further compared to that of the density functional approximation and the basis set. Large-scale calculations are routinely possible with the multipole-accelerated resolution of the identity approximation and the seminumerical exchange approximation, as shown for [CeTi6O3(OiPr)9(salicylate)6].
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Affiliation(s)
- Florian Bruder
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
| | - Yannick J Franzke
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
| | - Florian Weigend
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
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53
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Sun S, Ehrman JN, Sun Q, Li X. Efficient Evaluation of the Breit Operator in the Pauli Spinor Basis. J Chem Phys 2022; 157:064112. [DOI: 10.1063/5.0098828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The frequency-independent Coulomb-Breit operator gives rise to the most accurate treatment of two-electron interaction in the non-quantum-electrodynamics regime. The Breit interaction in the Coulomb gauge consists of magnetic and gauge contributions. The high computational cost of the gauge term limits the application of the Breit interaction in relativistic molecular calculations. In this work, we apply the Pauli component integral-density matrix contraction scheme for gauge interaction with a maximum spin- and component separation scheme. We also present two different computational algorithms for evaluating gauge integrals. One is the generalized Obara-Saika algorithm, where the Laplace transformation is used to transform the gauge operator into Gaussian functions and the Obara-Saika recursion is used for reducing the angular momentum. The other algorithm is the second derivative of inverse Coulomb interaction evaluated with Rys-quadrature. This work improves the efficiency of performing Dirac-Hartree-Fock with variational treatment of Breit interaction for molecular systems. We use this formalism to examine relativistic trends in the periodic table, and analyze the relativistic two-electron interaction contributions in heavy-element complexes.
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Affiliation(s)
- Shichao Sun
- Chemistry, University of Washington, United States of America
| | | | - Qiming Sun
- Anxian Investment Management Co. Ltd, China
| | - Xiaosong Li
- Department of Chemistry, University of Washington, United States of America
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54
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Keßler M, Hartmann L, Stammler HG, Neumann B, Röschenthaler GV, Hoge B. Free Difluorobis(pentafluoroethyl)phosphoranide Ion and Its Ligand Properties. Inorg Chem 2022; 61:10833-10843. [PMID: 35786908 DOI: 10.1021/acs.inorgchem.2c01143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this contribution, we report on the "free" [P(C2F5)2F2]- ion and its ligand properties in transition metal complex chemistry. For this purpose, Ag[P(C2F5)2F2] was treated with [{(Et2N)3P═N}3P═NHC(CH3)3]Cl ([EtP4H]Cl) to yield [EtP4H][P(C2F5)2F2], featuring a weakly coordinating phosphazenium cation. Due to the weak interaction between the cation and anion, the [P(C2F5)2F2]- ion meets the so-called pseudo-gas-phase conditions. To determine the Tolman electronic parameter, [EtP4H][Ni(CO)3{P(C2F5)2F2}] was prepared from [EtP4H][P(C2F5)2F2] and [Ni(CO)4], facilitating the classification of the P(C2F5)2F2 moiety as a moderately π-acidic ligand. By treatment of [EtP4H][P(C2F5)2F2] with [AuCl(tht)], the neutral tetrahydrothiophene ligand was substituted by the phosphoranide ion, yielding [EtP4H][AuCl{P(C2F5)2F2}]. When Ag[P(C2F5)2F2] was treated with [AuCl(tht)], on the other hand, the chloride was substituted. Transmetalation reactions of this type proved to be an efficient transfer method of the P(C2F5)2F2 moiety, as further demonstrated by the reactions of Ag[P(C2F5)2F2] with [FeCl(CO)2Cp], [FeCl(CO)2Cp*], and [PdCl2(NCMe)2]. Surprisingly, P(C2F5)2F demonstrated fluorinating abilities toward [FeCl(CO)2Cp], [FeCl(CO)2Cp*], [AuCl(tht)], and [PdCl2(NCMe)2]. Apparently, fluorido transition metal complexes were generated in situ under the formation of P(C2F5)2Cl. The fluorido iron and palladium complexes transfer their fluoride ions onto P(C2F5)2F, yielding the respective phosphoranido complexes, featuring the P(C2F5)2F2 moiety.
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Affiliation(s)
- Mira Keßler
- Centrum für Molekulare Materialien, Fakultät für Chemie, Universität Bielefeld, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Lukas Hartmann
- Centrum für Molekulare Materialien, Fakultät für Chemie, Universität Bielefeld, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Hans-Georg Stammler
- Centrum für Molekulare Materialien, Fakultät für Chemie, Universität Bielefeld, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Beate Neumann
- Centrum für Molekulare Materialien, Fakultät für Chemie, Universität Bielefeld, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Gerd-Volker Röschenthaler
- Department of Life Sciences and Chemistry, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
| | - Berthold Hoge
- Centrum für Molekulare Materialien, Fakultät für Chemie, Universität Bielefeld, Universitätsstraße 25, 33615 Bielefeld, Germany
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55
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Horne GP, Rotermund BM, Grimes TS, Sperling JM, Meeker DS, Zalupski PR, Beck N, Huffman ZK, Martinez DG, Beshay A, Peterman DR, Layne BH, Johnson J, Cook AR, Albrecht-Schönzart TE, Mezyk SP. Transient Radiation-Induced Berkelium(III) and Californium(III) Redox Chemistry in Aqueous Solution. Inorg Chem 2022; 61:10822-10832. [PMID: 35776877 DOI: 10.1021/acs.inorgchem.2c01106] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Despite the significant impact of radiation-induced redox reactions on the accessibility and lifetimes of actinide oxidation states, fundamental knowledge of aqueous actinide metal ion radiation chemistry is limited, especially for the late actinides. A quantitative understanding of these intrinsic radiation-induced processes is essential for investigating the fundamental properties of these actinides. We present here a picosecond electron pulse reaction kinetics study into the radiation-induced redox chemistry of trivalent berkelium (Bk(III)) and californium (Cf(III)) ions in acidic aqueous solutions at ambient temperature. New and first-of-a-kind, second-order rate coefficients are reported for the transient radical-induced reduction of Bk(III) and Cf(III) by the hydrated electron (eaq-) and hydrogen atom (H•), demonstrating a significant reactivity (up to 1011 M-1 s-1) indicative of a preference of these metals to adopt divalent states. Additionally, we report the first-ever second-order rate coefficients for the transient radical-induced oxidation of these elements by a reaction with hydroxyl (•OH) and nitrate (NO3•) radicals, which also exhibited fast reactivity (ca. 108 M-1 s-1). Transient Cf(II), Cf(IV), and Bk(IV) absorption spectra are also reported. Overall, the presented data highlight the existence of rich, complex, intrinsic late actinide radiation-induced redox chemistry that has the potential to influence the findings of other areas of actinide science.
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Affiliation(s)
- Gregory P Horne
- Center for Radiation Chemistry Research, Idaho National Laboratory, P.O. Box 1625, Idaho Falls, Idaho 83415, United States
| | - Brian M Rotermund
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Travis S Grimes
- Center for Radiation Chemistry Research, Idaho National Laboratory, P.O. Box 1625, Idaho Falls, Idaho 83415, United States
| | - Joseph M Sperling
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - David S Meeker
- Center for Radiation Chemistry Research, Idaho National Laboratory, P.O. Box 1625, Idaho Falls, Idaho 83415, United States.,Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Peter R Zalupski
- Center for Radiation Chemistry Research, Idaho National Laboratory, P.O. Box 1625, Idaho Falls, Idaho 83415, United States
| | - Nicholas Beck
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Zachary K Huffman
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Daniela Gomez Martinez
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Andrew Beshay
- Department of Chemistry and Biochemistry, California State University Long Beach, 1250 Bellflower Boulevard, Long Beach, California 90840-9507, United States
| | - Dean R Peterman
- Center for Radiation Chemistry Research, Idaho National Laboratory, P.O. Box 1625, Idaho Falls, Idaho 83415, United States
| | - Bobby H Layne
- Department of Chemistry, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Jason Johnson
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Andrew R Cook
- Department of Chemistry, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Thomas E Albrecht-Schönzart
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Stephen P Mezyk
- Department of Chemistry and Biochemistry, California State University Long Beach, 1250 Bellflower Boulevard, Long Beach, California 90840-9507, United States
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56
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Holzer C, Franzke YJ. A Local Hybrid Exchange Functional Approximation from First Principles. J Chem Phys 2022; 157:034108. [DOI: 10.1063/5.0100439] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Local hybrid functionals are a more flexible class of density functional approximations allowing for a position-dependent admixture of exact exchange. This additional flexibility, however, comes with a more involved mathematical form and a more complicated design. A common denominator for previously constructed local hybrid funtionals is usage of thermochemical benchmark data to construct these functionals. Herein, we design a local hybrid functional without relying on benchmark data. Instead, we construct it in a more ab initio manner, following the principles of modern meta-generalized gradient approximations and considering theoretical constrains. To achieve this, we make use of the density matrix expansion and a local mixing function based on an approximate correlation length. The accuracy of the developed density functional approximation is assessed for thermochemistry, excitation energies, polarizabilities, magnetizabilities, NMR spin-spincoupling constants, NMR shieldings and shifts, as well as EPR g-tensors and hyperfine coupling constants. Here, the new exchange functional shows a robust performance and is especially well suited for atomization energies, barrier heights, excitation energies, NMR coupling constants, and EPR properties, whereas it looses some ground for the NMR shifts.Therefore, the designed functional is a major step forwards for functionals that have been designed from first principles.
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Affiliation(s)
- Christof Holzer
- Institute of Theoretical Solid State Physics, Karlsruher Institut für Technologie Fakultät für Physik, Germany
| | - Yannick J. Franzke
- Fachbereich Chemie, Philipps-Universität Marburg Fachbereich Chemie, Germany
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57
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Østrøm I, Hossain MA, Burr PA, Hart JN, Hoex B. Designing 3d metal oxides: selecting optimal density functionals for strongly correlated materials. Phys Chem Chem Phys 2022; 24:14119-14139. [PMID: 35593423 DOI: 10.1039/d2cp01303g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Transition metal oxides (TMOs) have remarkable physicochemical properties, are non-toxic, and have low cost and high annual production, thus they are commonly studied for various technological applications. Density functional theory (DFT) can help to optimize TMO materials by providing insights into their electronic, optical and thermodynamic properties, and hence into their structure-performance relationships, over a wide range of solid-state structures and compositions. However, this is underpinned by the choice of the exchange-correlation (XC) functional, which is critical to accurately describe the highly localized and correlated 3d-electrons of the transition metals in TMOs. This tutorial review presents a benchmark study of density functionals (DFs), ranging from generalized gradient approximation (GGA) to range-separated hybrids (RSH), with the all-electron def2-TZVP basis set, comparing magneto-electro-optical properties of 3d TMOs against experimental observations. The performance of the DFs is assessed by analyzing the band structure, density of states, magnetic moment, structural static and dynamic parameters, optical properties, spin contamination and computational cost. The results disclose the strengths and weaknesses of the XC functionals, in terms of accuracy, and computational efficiency, suggesting the unprecedented PBE0-1/5 as the best candidate. The findings of this work contribute to necessary developments of XC functionals for periodic systems, and materials science modelling studies, particularly informing how to select the optimal XC functional to obtain the most trustworthy description of the ground-state electron structure of 3d TMOs.
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Affiliation(s)
- Ina Østrøm
- School of Photovoltaic and Renewable Energy Engineering, UNSW, Kensington, NSW 2052, Australia.
| | - Md Anower Hossain
- School of Photovoltaic and Renewable Energy Engineering, UNSW, Kensington, NSW 2052, Australia.
| | - Patrick A Burr
- School of Mechanical and Manufacturing Engineering, UNSW, Kensington, NSW 2052, Australia
| | - Judy N Hart
- School of Materials Science & Engineering, UNSW, Kensington, NSW 2052, Australia
| | - Bram Hoex
- School of Photovoltaic and Renewable Energy Engineering, UNSW, Kensington, NSW 2052, Australia.
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58
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Insights into the value of statistical models, solvent, and relativistic effects for investigating Re complexes of 2-(4'-aminophenyl)benzothiazole: a potential spectroscopic probe. J Mol Model 2022; 28:154. [PMID: 35578053 DOI: 10.1007/s00894-022-05146-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 04/18/2022] [Indexed: 10/18/2022]
Abstract
Cancer affects a major part of the worldwide population, and, to minimize deaths, the diagnosis in the early stages of the disease is fundamental. Thus, to improve diagnosis and treatment new potential spectroscopic probes are crucial. Benzothiazole derivates present antitumor properties and are highly selective and interact strongly with the enzyme phosphoinositide 3-kinase (PI3K), which was associated with cell proliferation and breast cancer cells. In this paper, the rhenium shielding tensors (187Re(σ)) and hydrogen and carbon chemical shifts (1H(δ) and 13C(δ)) of the Re(CO)3(NNO) complex conjugated with 2-(4'-aminophenyl)benzothiazole (ReABT) were evaluated. A statistical HCA model was used to analyze the best DFT protocol to compute σ and δ values and to evaluate the relativistic effects, both in the basis set and Hamiltonian as well as the functionals M06L or PBE0. The best protocol was applied to obtain 187Re(σ) of the ReABT complex in different environments (gas phase, solution, and in the active site of the PI3K enzyme). The results point out that 187Re(σ) values of the ReABT complex change significantly when the complex is docked in the PI3K enzyme.
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59
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Creutzberg J, Hedegård ED. Polarizable Embedding Complex Polarization Propagator in Four- and Two-Component Frameworks. J Chem Theory Comput 2022; 18:3671-3686. [PMID: 35549262 DOI: 10.1021/acs.jctc.1c01249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Explicit embedding methods combined with the complex polarization propagator (CPP) enable the modeling of spectroscopy for increasingly complex systems with a high density of states. We present the first derivation and implementation of the CPP in four- and exact-two-component (X2C) polarizable embedding (PE) frameworks. We denote the developed methods PE-4c-CPP and PE-X2C-CPP, respectively. We illustrate the methods by estimating the solvent effect on ultraviolet-visible (UV-vis) and X-ray atomic absorption (XAS) spectra of [Rh(H2O)6]3+ and [Ir(H2O)6]3+ immersed in aqueous solution. We moreover estimate solvent effects on UV-vis spectra of a platinum complex that can be photochemically activated (in water) to kill cancer cells. Our results clearly show that the inclusion of the environment is required: UV-vis and (to a lesser degree) XAS spectra can become qualitatively different from vacuum calculations. Comparison of PE-4c-CPP and PE-X2C-CPP methods shows that X2C essentially reproduces the solvent effect obtained with the 4c methods.
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Affiliation(s)
- Joel Creutzberg
- Division of Theoretical Chemistry, Lund University, SE-223 62 Lund, Sweden
| | - Erik D Hedegård
- Division of Theoretical Chemistry, Lund University, SE-223 62 Lund, Sweden.,Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
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60
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Costa Peluzo BMT, Kraka E. Uranium: The Nuclear Fuel Cycle and Beyond. Int J Mol Sci 2022; 23:ijms23094655. [PMID: 35563047 PMCID: PMC9101921 DOI: 10.3390/ijms23094655] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Revised: 04/13/2022] [Accepted: 04/18/2022] [Indexed: 01/01/2023] Open
Abstract
This review summarizes the recent developments regarding the use of uranium as nuclear fuel, including recycling and health aspects, elucidated from a chemical point of view, i.e., emphasizing the rich uranium coordination chemistry, which has also raised interest in using uranium compounds in synthesis and catalysis. A number of novel uranium coordination features are addressed, such the emerging number of U(II) complexes and uranium nitride complexes as a promising class of materials for more efficient and safer nuclear fuels. The current discussion about uranium triple bonds is addressed by quantum chemical investigations using local vibrational mode force constants as quantitative bond strength descriptors based on vibrational spectroscopy. The local mode analysis of selected uranium nitrides, N≡U≡N, U≡N, N≡U=NH and N≡U=O, could confirm and quantify, for the first time, that these molecules exhibit a UN triple bond as hypothesized in the literature. We hope that this review will inspire the community interested in uranium chemistry and will serve as an incubator for fruitful collaborations between theory and experimentation in exploring the wealth of uranium chemistry.
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61
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Sharma P, Jenkins AJ, Scalmani G, Frisch MJ, Truhlar DG, Gagliardi L, Li X. Exact-Two-Component Multiconfiguration Pair-Density Functional Theory. J Chem Theory Comput 2022; 18:2947-2954. [PMID: 35384665 DOI: 10.1021/acs.jctc.2c00062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Molecules containing late-row elements exhibit large relativistic effects. To account for both relativistic effects and electron correlation in a computationally inexpensive way, we derived a formulation of multiconfiguration pair-density functional theory with the relativistic exact-two-component Hamiltonian (X2C-MC-PDFT). In this new method, relativistic effects are included during variational optimization of a reference wave function by exact-two-component complete active-space self-consistent-field (X2C-CASSCF) theory, followed by an energy evaluation using pair-density functional theory. Benchmark studies of excited-state and ground-state fine-structure splitting of atomic species show that X2C-MC-PDFT can significantly improve the X2C-CASSCF results by introducing additional state-specific electron correlation.
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Affiliation(s)
- Prachi Sharma
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Andrew J Jenkins
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Giovanni Scalmani
- Gaussian Inc., 340 Quinnipiac Street, Building 40, Wallingford, Connecticut 06492, United States
| | - Michael J Frisch
- Gaussian Inc., 340 Quinnipiac Street, Building 40, Wallingford, Connecticut 06492, United States
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Laura Gagliardi
- Department of Chemistry, University of Chicago, 5735 S Ellis Avenue, Chicago, Illinois 60637, United States
| | - Xiaosong Li
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
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62
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Zhang N, Xiao Y, Liu W. SOiCI and iCISO: combining iterative configuration interaction with spin-orbit coupling in two ways. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2022; 34:224007. [PMID: 35287124 DOI: 10.1088/1361-648x/ac5db4] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
The near-exact iCIPT2 approach for strongly correlated systems of electrons, which stems from the combination of iterative configuration interaction (iCI, an exact solver of full CI) with configuration selection for static correlation and second-order perturbation theory (PT2) for dynamic correlation, is extended to the relativistic domain. In the spirit of spin separation, relativistic effects are treated in two steps: scalar relativity is treated by the infinite-order, spin-free part of the exact two-component (X2C) relativistic Hamiltonian, whereas spin-orbit coupling (SOC) is treated by the first-order, Douglas-Kroll-Hess-like SOC operator derived from the same X2C Hamiltonian. Two possible combinations of iCIPT2 with SOC are considered, i.e., SOiCI and iCISO. The former treats SOC and electron correlation on an equal footing, whereas the latter treats SOC in the spirit of state interaction, by constructing and diagonalizing an effective spin-orbit Hamiltonian matrix in a small number of correlated scalar states. Both double group and time reversal symmetries are incorporated to simplify the computation. Pilot applications reveal that SOiCI is very accurate for the spin-orbit splitting (SOS) of heavy atoms, whereas the computationally very cheap iCISO can safely be applied to the SOS of light atoms and even of systems containing heavy atoms when SOC is largely quenched by ligand fields.
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Affiliation(s)
- Ning Zhang
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, People's Republic of China
| | - Yunlong Xiao
- Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, People's Republic of China
| | - Wenjian Liu
- Qingdao Institute for Theoretical and Computational Sciences, Institute of Frontier and Interdisciplinary Science, Shandong University, Qingdao, Shandong 266237, People's Republic of China
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63
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Pradhan E, Yao G, Yang Z, Zeng T. Unified one-electron Hamiltonian formalism of spin-orbit Jahn-Teller and pseudo-Jahn-Teller problems in tetrahedral and octahedral symmetries. J Chem Phys 2022; 157:064104. [DOI: 10.1063/5.0090053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Heavy element compounds with high symmetries often feature both spin-orbit coupling and vibronic coupling. This is especially true for systems with tetrahedral and octahedral symmetries, whose electronic states may be three-fold degenerate and experience complicated Jahn-Teller and pseudo-Jahn-Teller interactions. To accurately describe these interactions, high quality spin-orbit vibronic Hamiltonian operators are needed. In this study, we present a unified one-electron Hamiltonian formalism for spin-orbit vibronic interactions for systems in all tetrahedral and octahedral symmetries. The formalism covers all spin-orbit Jahn-Teller and pseudo-Jahn-Teller problems in the symmetries with arbitrary types and arbitrary numbers of vibrational modes, and generates Hamiltonian expansion formulas of arbitrarily high order.
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Affiliation(s)
| | | | | | - Tao Zeng
- Department of Chemistry, York University, Canada
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64
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Franzke YJ, Yu JM. Quasi-Relativistic Calculation of EPR g Tensors with Derivatives of the Decoupling Transformation, Gauge-Including Atomic Orbitals, and Magnetic Balance. J Chem Theory Comput 2022; 18:2246-2266. [PMID: 35354319 DOI: 10.1021/acs.jctc.1c01175] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
We present an exact two-component (X2C) ansatz for the EPR g tensor using gauge-including atomic orbitals (GIAOs) and a magnetically balanced basis set expansion. In contrast to previous X2C and four-component relativistic ansätze for the g tensor, this implementation results in a gauge-origin-invariant formalism. Furthermore, the derivatives of the relativistic decoupling matrix are incorporated to form the complete analytical derivative of the X2C Hamiltonian. To reduce the associated computational costs, we apply the diagonal local approximation to the unitary decoupling transformation (DLU). The quasi-relativistic X2C and DLU-X2C Hamiltonians accurately reproduce the results of the parent four-component relativistic theory when accounting for two-electron picture-change effects with the modified screened nuclear spin-orbit approximation in the respective one-electron integrals and integral derivatives. According to our benchmark studies, the uncontracted Dyall and segmented-contracted Karlsruhe x2c-type basis sets perform well when compared to large even-tempered basis sets. Moreover, (range-separated) hybrid density functional approximations such as LC-ωPBE and ωB97X-D are needed to match the experimental findings. The impact of the GIAOs depends on the distribution of the spin density, and their use may change the Δg shifts by 10-50% as shown for [(C5Me5)2Y(μ-S)2Mo(μ-S)2Y(C5Me5)2]-. Routine calculations of large molecules are possible with widely available and comparably low-cost hardware as demonstrated for [Pt(C6Cl5)4]- with 3003 basis functions and three spin-(1/2) La(II) and Lu(II) compounds, for which we observe good agreement with the experimental findings.
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Affiliation(s)
- Yannick J Franzke
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
| | - Jason M Yu
- Department of Chemistry, University of California─Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
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65
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Kundu K, White JRK, Moehring SA, Yu JM, Ziller JW, Furche F, Evans WJ, Hill S. A 9.2-GHz clock transition in a Lu(II) molecular spin qubit arising from a 3,467-MHz hyperfine interaction. Nat Chem 2022; 14:392-397. [PMID: 35288686 DOI: 10.1038/s41557-022-00894-4] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 01/13/2022] [Indexed: 11/09/2022]
Abstract
Spins in molecules are particularly attractive targets for next-generation quantum technologies, enabling chemically programmable qubits and potential for scale-up via self-assembly. Here we report the observation of one of the largest hyperfine interactions for a molecular system, Aiso = 3,467 ± 50 MHz, as well as a very large associated clock transition. This is achieved through chemical control of the degree of s-orbital mixing into the spin-bearing d orbital associated with a series of spin-½ La(II) and Lu(II) complexes. Increased s-orbital character reduces spin-orbit coupling and enhances the electron-nuclear Fermi contact interaction. Both outcomes are advantageous for quantum applications. The former reduces spin-lattice relaxation, and the latter maximizes the hyperfine interaction, which, in turn, generates a 9-GHz clock transition, leading to an increase in phase memory time from 1.0 ± 0.4 to 12 ± 1 μs for one of the Lu(II) complexes. These findings suggest strategies for the development of molecular quantum technologies, akin to trapped ion systems.
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Affiliation(s)
- Krishnendu Kundu
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, USA
| | | | | | - Jason M Yu
- Department of Chemistry, University of California, Irvine, CA, USA
| | - Joseph W Ziller
- Department of Chemistry, University of California, Irvine, CA, USA
| | - Filipp Furche
- Department of Chemistry, University of California, Irvine, CA, USA.
| | - William J Evans
- Department of Chemistry, University of California, Irvine, CA, USA.
| | - Stephen Hill
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, USA. .,Department of Physics, Florida State University, Tallahassee, FL, USA.
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66
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Auride ion interaction with borane: A theoretical study of AuBH3−. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2021.139288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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67
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Fritsch F, Weike T, Eisfeld W. A general method for the development of diabatic spin-orbit models for multi-electron systems. J Chem Phys 2022; 156:054115. [DOI: 10.1063/5.0078908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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68
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Tulsiyan KD, Jena S, Dutta J, Biswal HS. Hydrogen Bonding with Polonium. Phys Chem Chem Phys 2022; 24:17185-17194. [DOI: 10.1039/d2cp01852g] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogen bonding (H-bonding) with heavier chalcogens such as polonium and tellurium is almost unexplored owing to their lower electronegativities, providing us an opportunity to delve into the uncharted territory of...
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69
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Uritis S, Thummel RP, Lee HS, Hancock RD. A study of the complexes of Hg(II) with polypyridyl ligands by Fluorescence, absorbance Spectroscopy, and DFT calculations. The effect of ligand preorganization and relativistic effects on complex stability. Inorganica Chim Acta 2022. [DOI: 10.1016/j.ica.2021.120670] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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70
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Franzke YJ, Yu JM. Hyperfine Coupling Constants in Local Exact Two-Component Theory. J Chem Theory Comput 2021; 18:323-343. [PMID: 34928142 DOI: 10.1021/acs.jctc.1c01027] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We present a highly efficient implementation of the electron-nucleus hyperfine coupling matrix within the one-electron exact two-component (X2C) theory. The complete derivative of the X2C Hamiltonian is formed, that is, the derivatives of the unitary decoupling transformation are considered. This requires the solution of the response and Sylvester equations, consequently increasing the computational costs. Therefore, we apply the diagonal local approximation to the unitary decoupling transformation (DLU). The finite nucleus model is employed for both the scalar potential and the vector potential. Two-electron picture-change effects are modeled with the (modified) screened nuclear spin-orbit approach. Our implementation is fully integral direct and OpenMP-parallelized. An extensive benchmark study regarding the Hamiltonian, the basis set, and the density functional approximation is carried out for a set of 12-17 transition-metal compounds. The error introduced by DLU is negligible, and the DLU-X2C Hamiltonian accurately reproduces its four-component "fully" relativistic parent results. Functionals with a large amount of Hartree-Fock exchange such as CAM-QTP-02 and ωB97X-D are generally favorable. The pure density functional r2SCAN performs remarkably and even outperforms the common hybrid functionals TPSSh and CAM-B3LYP. Fully uncontracted basis sets or contracted quadruple-ζ bases are required for accurate results. The capability of our implementation is demonstrated for [Pt(C6Cl5)4]- with more than 4700 primitive basis functions and four rare-earth single-molecule magnets: [La(OAr*)3]-, [Lu(NR2)3]-, [Lu(OAr*)3]-, and [TbPc2]-. Here, the results with the spin-orbit DLU-X2C Hamiltonian are in an excellent agreement with the experimental findings of all Pt, La, Lu, and Tb molecules.
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Affiliation(s)
- Yannick J Franzke
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032 Marburg, Germany
| | - Jason M Yu
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
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71
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Brown J, Pradhan E, Zeng T. Unified one-electron Hamiltonian formalism of spin-orbit Jahn-Teller and pseudo-Jahn-Teller problems in axial symmetries. J Chem Phys 2021; 155:224108. [PMID: 34911326 DOI: 10.1063/5.0068044] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Spin-orbit coupling and vibronic coupling are both closely related to orbital degeneracy of electronic states. Both types of coupling play significant roles in determining properties of heavy element compounds and shall be treated on the same footing. In this work, we derive a unified one-electron Hamiltonian formalism for spin-orbit and vibronic interactions for systems in all axial symmetries. The one-electron formalism is usually adequate as the spin-orbit interaction can often be approximated as a one-electron interaction. For the first time, the formalism covers spin-orbit and vibronic couplings in all axial symmetries from C1 to D∞h, arbitrary types of vibrational modes in those symmetries, and an arbitrary number of those modes and gives Hamiltonian expansions up to an arbitrary order.
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Affiliation(s)
- James Brown
- Department of Chemistry, York University, Toronto, Ontario M3J1P3, Canada
| | - Ekadashi Pradhan
- Department of Chemistry, York University, Toronto, Ontario M3J1P3, Canada
| | - Tao Zeng
- Department of Chemistry, York University, Toronto, Ontario M3J1P3, Canada
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72
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Conradie J, Alemayehu AB, Ghosh A. Iridium(VII)-Corrole Terminal Carbides Should Exist as Stable Compounds. ACS ORGANIC & INORGANIC AU 2021; 2:159-163. [PMID: 36855452 PMCID: PMC9955125 DOI: 10.1021/acsorginorgau.1c00029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Scalar-relativistic DFT calculations with multiple exchange-correlation functionals and large basis sets foreshadow the existence of stable iridium(VII)-corrole terminal carbide derivatives. For the parent compound Ir[Cor](C), OLYP/STO-TZ2P calculations predict a short Ir-C bond distance of 1.69 Å, a moderately domed macrocycle with no indications of ligand noninnocence, a surprisingly low electron affinity of ∼1.1 eV, and a substantial singlet-triplet gap of ∼1.8 eV. These results, and their essential invariance with respect to the choice of the exchange-correlation functional, lead us to posit that Ir(VII)-corrole terminal carbide complexes should be isolable and indefinitely stable under ambient conditions.
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Affiliation(s)
- Jeanet Conradie
- Department
of Chemistry, UiT The Arctic University
of Norway, N-9037 Tromsø, Norway,Department
of Chemistry, University of the Free State, P.O. Box 339, Bloemfontein 9300, Republic of South Africa
| | - Abraham B. Alemayehu
- Department
of Chemistry, UiT The Arctic University
of Norway, N-9037 Tromsø, Norway
| | - Abhik Ghosh
- Department
of Chemistry, UiT The Arctic University
of Norway, N-9037 Tromsø, Norway,
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Gaiser AN, Celis-Barros C, White FD, Beltran-Leiva MJ, Sperling JM, Salpage SR, Poe TN, Gomez Martinez D, Jian T, Wolford NJ, Jones NJ, Ritz AJ, Lazenby RA, Gibson JK, Baumbach RE, Páez-Hernández D, Neidig ML, Albrecht-Schönzart TE. Creation of an unexpected plane of enhanced covalency in cerium(III) and berkelium(III) terpyridyl complexes. Nat Commun 2021; 12:7230. [PMID: 34893651 PMCID: PMC8664847 DOI: 10.1038/s41467-021-27576-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 11/30/2021] [Indexed: 11/28/2022] Open
Abstract
Controlling the properties of heavy element complexes, such as those containing berkelium, is challenging because relativistic effects, spin-orbit and ligand-field splitting, and complex metal-ligand bonding, all dictate the final electronic states of the molecules. While the first two of these are currently beyond experimental control, covalent M‒L interactions could theoretically be boosted through the employment of chelators with large polarizabilities that substantially shift the electron density in the molecules. This theory is tested by ligating BkIII with 4'-(4-nitrophenyl)-2,2':6',2"-terpyridine (terpy*), a ligand with a large dipole. The resultant complex, Bk(terpy*)(NO3)3(H2O)·THF, is benchmarked with its closest electrochemical analog, Ce(terpy*)(NO3)3(H2O)·THF. Here, we show that enhanced Bk‒N interactions with terpy* are observed as predicted. Unexpectedly, induced polarization by terpy* also creates a plane in the molecules wherein the M‒L bonds trans to terpy* are shorter than anticipated. Moreover, these molecules are highly anisotropic and rhombic EPR spectra for the CeIII complex are reported.
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Affiliation(s)
- Alyssa N Gaiser
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Cristian Celis-Barros
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Frankie D White
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Maria J Beltran-Leiva
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Joseph M Sperling
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Sahan R Salpage
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Todd N Poe
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Daniela Gomez Martinez
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Tian Jian
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Nikki J Wolford
- Department of Chemistry, University of Rochester, Rochester, NY, 14627, USA
| | - Nathaniel J Jones
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Amanda J Ritz
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Robert A Lazenby
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - John K Gibson
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Ryan E Baumbach
- National High Magnetic Field Laboratory, Tallahassee, FL, 32310, USA
| | - Dayán Páez-Hernández
- Center for Applied Nanosciences, Universidad Andres Bello, República 275, Santiago, Chile
| | - Michael L Neidig
- Department of Chemistry, University of Rochester, Rochester, NY, 14627, USA
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74
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Gillhuber S, Franzke YJ, Weigend F. Paramagnetic NMR Shielding Tensors and Ring Currents: Efficient Implementation and Application to Heavy Element Compounds. J Phys Chem A 2021; 125:9707-9723. [PMID: 34723533 DOI: 10.1021/acs.jpca.1c07793] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present an efficient implementation of paramagnetic NMR shielding tensors and shifts in a nonrelativistic and scalar-relativistic density functional theory framework. For the latter, we make use of the scalar exact two-component Hamiltonian in its local approximation, and generally we apply the well established (multipole-accelerated) resolution of the identity approximation and the seminumerical exchange approximation. The perturbed density matrix of a paramagnetic NMR shielding calculation is further used to study the magnetically induced current density and ring currents of open-shell systems as illustrated for [U@Bi12]3-. [U@Bi12]3- features delocalized highest occupied molecular orbitals and sustains a net diatropic ring current of ca. 18 nA/T through the Bi12 torus similar to the all-metal aromatic heavy-element cluster [Th@Bi12]4-.
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Affiliation(s)
- Sebastian Gillhuber
- Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), 76131 Karlsruhe, Germany
| | - Yannick J Franzke
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
| | - Florian Weigend
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
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75
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Mirzaeva I. Large relativistic effects in 119Sn NMR parameters: A case study of complex anions [Cp*M(SnCl3)nCl3−n]−, where M = Rh, Ir; n = 1, 2, 3. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113432] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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76
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A quest for the universal atomic radii. Struct Chem 2021. [DOI: 10.1007/s11224-021-01850-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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77
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Sabu SS, Simplica SJA, Tandon H, Chakraborty T. A scale of absolute hardness based on the conjoint action of other properties. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1992521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
| | | | - Hiteshi Tandon
- Department of Chemistry, Manipal University Jaipur, Jaipur, India
| | - Tanmoy Chakraborty
- Department of Chemistry and Biochemistry, School of Basic Sciences and Research, Sharda University, Greater Noida, India
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78
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Blaško M, Pašteka LF, Urban M. DFT Functionals for Modeling of Polyethylene Chains Cross-Linked by Metal Atoms. DLPNO-CCSD(T) Benchmark Calculations. J Phys Chem A 2021; 125:7382-7395. [PMID: 34428051 DOI: 10.1021/acs.jpca.1c04793] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Density functional theory (DFT) functionals for calculations of binding energies (BEs) of the polyethylene (PE) chains cross-linked by selected metal atoms (M) are benchmarked against DLPNO-CCSD(T) and DLPNO-CCSD(T1) data. PEX-M-PEX complexes as compared with plain parallel PEX···PEX chains with X = 3-9 carbon atoms are model species characterized by a cooperative effect of covalent C-M-C bonds and interchain dispersion interactions. The accuracy of DLPNO-CC methods was assessed by a comparison of BEs with the canonical CCSD(T) results for small PE3-M-PE3 complexes. Functionals for PEX···PEX and closed-shell PEX-M-PEX complexes (M = Be, Mg, Zn) were benchmarked against DLPNO-CCSD(T) BEs; open-shell complexes (M = Li, Ag, Au) were benchmarked against the DLPNO-CCSD(T1) method with iterative triples. Three dispersion corrections were combined with 25 DFT functionals for calculations of BEs with respect to PEX-M and PEX fragments employing def2-TZVPP and def2-QZVPP basis sets. Accuracy to within 5% for the closed-shell PEX-M-PEX complexes was achieved with five functionals. Less accurate are functionals for the open-shell PEX-M-PEX complexes; only two functionals deviate by less than 15% from DLPNO-CCSD(T1). Particularly problematic were PEX-Li-PEX complexes. A reasonable overall performance across all complexes in terms of the mean absolute percentage error is found for the range-separated hybrid functionals ωB97X-D3 and CAM-B3LYP/D3(BJ)-ABC.
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Affiliation(s)
- Martin Blaško
- FunGlass, A. Dubček University of Trenčín, Študentská 2, 911 50 Trenčín, Slovakia
| | - Lukáš F Pašteka
- Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Miroslav Urban
- Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 84215 Bratislava, Slovakia
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Keith JA, Vassilev-Galindo V, Cheng B, Chmiela S, Gastegger M, Müller KR, Tkatchenko A. Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems. Chem Rev 2021; 121:9816-9872. [PMID: 34232033 PMCID: PMC8391798 DOI: 10.1021/acs.chemrev.1c00107] [Citation(s) in RCA: 190] [Impact Index Per Article: 63.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Indexed: 12/23/2022]
Abstract
Machine learning models are poised to make a transformative impact on chemical sciences by dramatically accelerating computational algorithms and amplifying insights available from computational chemistry methods. However, achieving this requires a confluence and coaction of expertise in computer science and physical sciences. This Review is written for new and experienced researchers working at the intersection of both fields. We first provide concise tutorials of computational chemistry and machine learning methods, showing how insights involving both can be achieved. We follow with a critical review of noteworthy applications that demonstrate how computational chemistry and machine learning can be used together to provide insightful (and useful) predictions in molecular and materials modeling, retrosyntheses, catalysis, and drug design.
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Affiliation(s)
- John A. Keith
- Department
of Chemical and Petroleum Engineering Swanson School of Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, United States
| | - Valentin Vassilev-Galindo
- Department
of Physics and Materials Science, University
of Luxembourg, L-1511 Luxembourg City, Luxembourg
| | - Bingqing Cheng
- Accelerate
Programme for Scientific Discovery, Department
of Computer Science and Technology, 15 J. J. Thomson Avenue, Cambridge CB3 0FD, United Kingdom
| | - Stefan Chmiela
- Department
of Software Engineering and Theoretical Computer Science, Technische Universität Berlin, 10587, Berlin, Germany
| | - Michael Gastegger
- Department
of Software Engineering and Theoretical Computer Science, Technische Universität Berlin, 10587, Berlin, Germany
| | - Klaus-Robert Müller
- Machine
Learning Group, Technische Universität
Berlin, 10587, Berlin, Germany
- Department
of Artificial Intelligence, Korea University, Anam-dong, Seongbuk-gu, Seoul, 02841, Korea
- Max-Planck-Institut für Informatik, 66123 Saarbrücken, Germany
- Google Research, Brain Team, 10117 Berlin, Germany
| | - Alexandre Tkatchenko
- Department
of Physics and Materials Science, University
of Luxembourg, L-1511 Luxembourg City, Luxembourg
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80
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Zobel JP, González L. The Quest to Simulate Excited-State Dynamics of Transition Metal Complexes. JACS AU 2021; 1:1116-1140. [PMID: 34467353 PMCID: PMC8397362 DOI: 10.1021/jacsau.1c00252] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Indexed: 05/15/2023]
Abstract
This Perspective describes current computational efforts in the field of simulating photodynamics of transition metal complexes. We present the typical workflows and feature the strengths and limitations of the different contemporary approaches. From electronic structure methods suitable to describe transition metal complexes to approaches able to simulate their nuclear dynamics under the effect of light, we give particular attention to build a bridge between theory and experiment by critically discussing the different models commonly adopted in the interpretation of spectroscopic experiments and the simulation of particular observables. Thereby, we review all the studies of excited-state dynamics on transition metal complexes, both in gas phase and in solution from reduced to full dimensionality.
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Affiliation(s)
- J. Patrick Zobel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währingerstr. 19, 1090 Vienna Austria
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währingerstr. 19, 1090 Vienna Austria
- Vienna
Research Platform on Accelerating Photoreaction Discovery, University of Vienna, Währingerstr. 19, 1090 Vienna Austria
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81
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Tutorial on Chemical Pressure Analysis: How Atomic Packing Drives Laves/Zintl Intergrowth in K3Au5Tl. CRYSTALS 2021. [DOI: 10.3390/cryst11080906] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The tight atomic packing generally exhibited by alloys and intermetallics can create the impression of their being composed of hard spheres arranged to maximize their density. As such, the atomic size factor has historically been central to explanations of the structural chemistry of these systems. However, the role atomic size plays structurally has traditionally been inferred from empirical considerations. The recently developed DFT-Chemical Pressure (CP) analysis has opened a path to investigating these effects with theory. In this article, we provide a step-by-step tutorial on the DFT-CP method for non-specialists, along with advances in the approach that broaden its applicability. A new version of the CP software package is introduced, which features an interactive system that guides the user in preparing the necessary electronic structure data and generating the CP scheme, with the results being readily visualized with a web browser (and easily incorporated into websites). For demonstration purposes, we investigate the origins of the crystal structure of K3Au5Tl, which represents an intergrowth of Laves and Zintl phase domains. Here, CP analysis reveals that the intergrowth is supported by complementary CP features of NaTl-type KTl and MgCu2-type KAu2 phases. In this way, K3Au5Tl exemplifies how CP effects can drive the merging for geometrical motifs derived from different families of intermetallics through a mechanism referred to as epitaxial stabilization.
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82
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Braband H, Benz M, Spingler B, Conradie J, Alberto R, Ghosh A. Relativity as a Synthesis Design Principle: A Comparative Study of [3 + 2] Cycloaddition of Technetium(VII) and Rhenium(VII) Trioxo Complexes with Olefins. Inorg Chem 2021; 60:11090-11097. [PMID: 34255507 PMCID: PMC8388117 DOI: 10.1021/acs.inorgchem.1c00995] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
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The difference in [3 + 2] cycloaddition reactivity between fac-[MO3(tacn)]+ (M = Re, 99Tc; tacn = 1,4,7-triazacyclononane) complexes has been reexamined
with a selection of unsaturated substrates including sodium 4-vinylbenzenesulfonate,
norbornene, 2-butyne, and 2-methyl-3-butyn-2-ol (2MByOH). None of
the substrates was found to react with the Re cation in water at room
temperature, whereas the 99Tc reagent cleanly yielded the [3 + 2] cycloadducts. Interestingly,
a bis-adduct was obtained as the sole product for 2MByOH, reflecting
the high reactivity of a 99TcO-enediolato monoadduct. On
the basis of scalar relativistic and nonrelativistic density functional
theory calculations of the reaction pathways, the dramatic difference
in reactivity between the two metals has now been substantially attributed to differences in relativistic effects, which are much
larger for the 5d metal. Furthermore, scalar-relativistic ΔG values were found to decrease along the series propene
> norbornene > 2-butyne > dimethylketene, indicating major variations
in the thermodynamic driving force as a function of the unsaturated
substrate. The suggestion is made that scalar-relativistic effects,
consisting of greater destabilization of the valence electrons of
the 5d elements compared with those of the 4d elements, be viewed
as a new design principle for novel 99mTc/Re radiopharmaceuticals,
as well as more generally in heavy-element coordination chemistry. Room temperature cycloaddition reactivity of fac-[99TcO3(tacn)]+ (tacn = 1,4,7-triazacyclononane)
with a variety of unsaturated substrates and the lack of such reactivity
for fac-[ReO3(tacn)]+ appears
largely attributable to much stronger relativistic effects for Re
relative to Tc, based on relativistic density functional theory calculations.
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Affiliation(s)
- Henrik Braband
- Department of Chemistry, University of Zurich, Zürich 8057, Switzerland
| | - Michael Benz
- Department of Chemistry, University of Zurich, Zürich 8057, Switzerland
| | - Bernhard Spingler
- Department of Chemistry, University of Zurich, Zürich 8057, Switzerland
| | - Jeanet Conradie
- Department of Chemistry, UiT-The Arctic University of Norway, Tromsø N-9037, Norway.,Department of Chemistry, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - Roger Alberto
- Department of Chemistry, University of Zurich, Zürich 8057, Switzerland
| | - Abhik Ghosh
- Department of Chemistry, UiT-The Arctic University of Norway, Tromsø N-9037, Norway
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83
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Priola E, Mahmoudi G, Andreo J, Frontera A. Unprecedented [d 9]Cu[d 10]Au coinage bonding interactions in {Cu(NH 3) 4[Au(CN) 2]} +[Au(CN) 2] - salt. Chem Commun (Camb) 2021; 57:7268-7271. [PMID: 34195712 DOI: 10.1039/d1cc02709c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The X-ray structure of the {Cu(NH3)4[Au(CN)2]}+[Au(CN)2]- salt is reported showing an unprecedented [d9]Cu[d10]Au coinage bond. The physical nature of the interaction has been studied using DFT calculations, including the quantum theory of atoms-in-molecules, the noncovalent interaction plot and the natural bond orbital analysis, revealing the nucleophilic role of the [d10]Au metal and the electrophilic role of [d9]Cu metal.
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Affiliation(s)
- Emanuele Priola
- Department of Chemistry, Universitá di Torino, Via Pietro Giuria 7, Torino 10125, Italy
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84
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Santiago RT, Vichietti RM, Machado FBC, Haiduke RLA. The relativistic effects on the methane activation by gold(I) cations. J Chem Phys 2021; 154:244113. [PMID: 34241346 DOI: 10.1063/5.0053881] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The reactivity of gold has been investigated for a long time. Here, we performed an in-depth analysis of relativistic effects over the chemical kinetic properties of elementary reactions associated with methane activation by gold(I) cations, CH4 + Au+ ↔ AuCH2 + + H2. The global reaction is modeled as a two-step process, CH4 + Au+ ↔ HAuCH3 + ↔ AuCH2 + + H2. Moreover, the barrierless dissociation of the initial adduct between reactants, AuCH4 +, is discussed as well. Higher-order relativistic treatments are used to provide corrections beyond the commonly considered scalar effects of relativistic effective core potentials (RECPs). Although the scalar relativistic contributions predominate, lowering the forward barrier heights by 48.4 and 36.1 kcal mol-1, the spin-orbit coupling effect can still provide additional reductions of these forward barrier heights by as much as 9% (1.0 and 2.2 kcal mol-1). The global reaction proceeds rapidly at low temperatures to the intermediate attained after the first hydrogen transfer, HAuCH3 +. The relativistic corrections beyond the ones from RECPs are still able to double the rate constant of the CH4 + Au+ → HAuCH3 + process at 300 K, while the reverse reaction becomes five times slower. The formation of global products from this intermediate only becomes significant at much higher temperatures (∼1500 K upward). The scalar relativistic contributions decrease the dissociation energy of the initial adduct, AuCH4 +, into the global products by 105.8 kcal mol-1, while the spin-orbit effect provides an extra lowering of 1.8 kcal mol-1.
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Affiliation(s)
- Régis T Santiago
- Departamento de Química e Física Molecular, Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, 13560-970 São Carlos, SP, Brazil
| | - Rafael M Vichietti
- Departamento de Química, Instituto Tecnológico de Aeronáutica, 12228-900 São José dos Campos, SP, Brazil
| | - Francisco B C Machado
- Departamento de Química, Instituto Tecnológico de Aeronáutica, 12228-900 São José dos Campos, SP, Brazil
| | - Roberto L A Haiduke
- Departamento de Química e Física Molecular, Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, 13560-970 São Carlos, SP, Brazil
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85
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de Oliveira RM, Machado de Macedo LG, da Cunha TF, Pirani F, Gargano R. A Spectroscopic Validation of the Improved Lennard-Jones Model. Molecules 2021; 26:3906. [PMID: 34206733 PMCID: PMC8271504 DOI: 10.3390/molecules26133906] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 06/21/2021] [Accepted: 06/24/2021] [Indexed: 11/17/2022] Open
Abstract
The Lennard-Jones (LJ) and Improved Lennard-Jones (ILJ) potential models have been deeply tested on the most accurate CCSD(T)/CBS electronic energies calculated for some weakly bound prototype systems. These results are important to plan the correct application of such models to systems at increasing complexity. CCSD(T)/CBS ground state electronic energies were determined for 21 diatomic systems composed by the combination of the noble gas atoms. These potentials were employed to calculate the rovibrational spectroscopic constants, and the results show that for 20 of the 21 pairs the ILJ predictions agree more effectively with the experimental data than those of the LJ model. The CCSD(T)/CBS energies were also used to determine the β parameter of the ILJ form, related to the softness/hardness of the interacting partners and controlling the shape of the potential well. This information supports the experimental finding that suggests the adoption of β≈9 for most of the systems involving noble gas atoms. The He-Ne and He-Ar molecules have a lifetime of less than 1ps in the 200-500 K temperature range, indicating that they are not considered stable under thermal conditions of gaseous bulks. Furthermore, the controversy concerning the presence of a "virtual" or a "real" vibrational state in the He2 molecule is discussed.
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Affiliation(s)
| | | | | | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Universitá degli studi di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy;
- Istituto CNR di Scienze e Tecnologie Chimiche (CNR-SCITEC), via Elce di Sotto 8, 06123 Perugia, Italy
| | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília, Brasília, DF 70910-900, Brazil
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86
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Franzke YJ, Mack F, Weigend F. NMR Indirect Spin-Spin Coupling Constants in a Modern Quasi-Relativistic Density Functional Framework. J Chem Theory Comput 2021; 17:3974-3994. [PMID: 34151571 DOI: 10.1021/acs.jctc.1c00167] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A quasi-relativistic implementation of NMR indirect spin-spin coupling constants is presented. The exact two-component (X2C) Hamiltonian and its diagonal local approximation to the unitary decoupling transformation (DLU) are utilized together with the (modified) screened nuclear spin-orbit approach. In a restricted kinetic balance, the finite nucleus model is available for both the scalar and vector potentials. The implementation supports density functionals up to the fourth rung of Jacob's ladder, i.e., (range-separated) hybrid and local hybrid functionals based on a seminumerical ansatz. We assess the quality of our quasi-relativistic X2C approach by comparison with "fully" relativistic four-component results for small main-group molecules and alkynyl compounds. The mean absolute error introduced by the DLU scheme is less than 0.05 × 1019 T J-2 of the reduced coupling constant for the small main-group molecules and 0.5 Hz for the alkynyl compounds. Thus, the error is significantly smaller than finite nucleus size effects for heavy elements. The basis set convergence and the impact of different density functional approximations are further studied. We propose a simple scheme to develop segmented-contracted relativistic all-electron basis sets for NMR spin-spin couplings. Our implementation allows us to perform calculations of extended molecules with reasonable computational effort, which is illustrated for the 1J(119Sn, 31P) coupling constant of a low-valent tin phosphinidenide complex. The corresponding results are in good agreement with the experimental findings.
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Affiliation(s)
- Yannick J Franzke
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany.,Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), 76131 Karlsruhe, Germany
| | - Fabian Mack
- Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), 76131 Karlsruhe, Germany
| | - Florian Weigend
- Fachbereich Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
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87
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Rogge T, Kaplaneris N, Chatani N, Kim J, Chang S, Punji B, Schafer LL, Musaev DG, Wencel-Delord J, Roberts CA, Sarpong R, Wilson ZE, Brimble MA, Johansson MJ, Ackermann L. C–H activation. ACTA ACUST UNITED AC 2021. [DOI: 10.1038/s43586-021-00041-2] [Citation(s) in RCA: 101] [Impact Index Per Article: 33.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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88
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Complexes with Atomic Gold Ions: Efficient Bis-Ligand Formation. Molecules 2021; 26:molecules26123484. [PMID: 34201126 PMCID: PMC8228841 DOI: 10.3390/molecules26123484] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 05/31/2021] [Accepted: 06/04/2021] [Indexed: 11/25/2022] Open
Abstract
Complexes of atomic gold with a variety of ligands have been formed by passing helium nanodroplets (HNDs) through two pickup cells containing gold vapor and the vapor of another dopant, namely a rare gas, a diatomic molecule (H2, N2, O2, I2, P2), or various polyatomic molecules (H2O, CO2, SF6, C6H6, adamantane, imidazole, dicyclopentadiene, and fullerene). The doped HNDs were irradiated by electrons; ensuing cations were identified in a high-resolution mass spectrometer. Anions were detected for benzene, dicyclopentadiene, and fullerene. For most ligands L, the abundance distribution of AuLn+ versus size n displays a remarkable enhancement at n = 2. The propensity towards bis-ligand formation is attributed to the formation of covalent bonds in Au+L2 which adopt a dumbbell structure, L-Au+-L, as previously found for L = Xe and C60. Another interesting observation is the effect of gold on the degree of ionization-induced intramolecular fragmentation. For most systems gold enhances the fragmentation, i.e., intramolecular fragmentation in AuLn+ is larger than in pure Ln+. Hydrogen, on the other hand, behaves differently, as intramolecular fragmentation in Au(H2)n+ is weaker than in pure (H2)n+ by an order of magnitude.
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89
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Cao Z, Zhou X, Zhang Y, Qi J. Coupled-cluster method for the electronic structure and spectroscopic constants in halohydride cations with spin–orbit coupling. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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90
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Electronic and transport properties of the dual-emitter organometallic compound IrQ(ppy)2. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.121814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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91
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Ramler J, Lichtenberg C. Bismuth species in the coordination sphere of transition metals: synthesis, bonding, coordination chemistry, and reactivity of molecular complexes. Dalton Trans 2021; 50:7120-7138. [PMID: 34008669 DOI: 10.1039/d1dt01300a] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
This contribution is focused on bismuth species in the coordination sphere of transition metals. In molecular transition metal complexes, three types of Bi-M bonding are considered, namely dative Bi→M interactions (with Bi acting as a donor), dative Bi←M interactions (with Bi acting as an acceptor) and covalent Bi-M interactions (M = transition metal). Synthetic routes to all three classes of compounds are outlined, the Bi-M bonding situation is discussed, trends in the geometric parameters and in the coordination chemistry of the compounds are addressed, and common spectroscopic properties are summarized. As an important part of this contribution, the reactivity of bismuth species in the coordination sphere of transition metal complexes in stoichiometric and catalytic reactions is highlighted.
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Affiliation(s)
- Jacqueline Ramler
- Department of Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany.
| | - Crispin Lichtenberg
- Department of Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany.
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92
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Yadav P, Tandon H, Malik B, Chakraborty T. An alternative approach to compute atomic hardness. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02768-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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93
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Pérez-Bitrián A, Baya M, Casas JM, Martín A, Menjón B. Hydrogen bonding to metals as a probe for an inverted ligand field. Dalton Trans 2021; 50:5465-5472. [PMID: 33908974 DOI: 10.1039/d1dt00597a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electron-rich, late transition metals are known to act as hydrogen-bonding (HBd) acceptors. In this regard, Pt(ii) centres in square-planar environments are particularly efficient. It is however puzzling that no convincing experimental evidence is currently available for the isoelectronic neighbour Au(iii) being involved in HBd interactions. We report now on the synthesis and characterisation of two series of isoleptic and isoelectronic (d8) compounds [(CF3)3Pt(L)]- and (CF3)3Au(L), where the L ligands are based on the quinoline frame and have been selected to favour HBd with the metal centre. Strong HBd interactions were actually found in the Pt(ii) compounds, based on structural and spectroscopic evidence, and they were further confirmed by theoretical calculations. In contrast, no evidence was obtained in the Au(iii) case. In order to find the reason underlying this general disparity, we undertook a detailed theoretical analysis of the model systems [(CF3)3Pt(py)]- and (CF3)3Au(py). This study revealed that the filled dz2 orbital is the HOMO in the case of Pt(ii), but is buried in the lower energy levels in the case of Au(iii). The sharply different electronic configurations involve ligand-field inversion on going from Pt to the next element Au. This is not a gradual but an abrupt change, which invalidates Au(iii) as a HBd-acceptor wherever ligand-field inversion occurs.
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Affiliation(s)
- Alberto Pérez-Bitrián
- Instituto de Síntesis Química y Catálisis Homogénea (iSQCH), CSIC-Universidad de Zaragoza, Zaragoza, Spain.
| | - Miguel Baya
- Instituto de Síntesis Química y Catálisis Homogénea (iSQCH), CSIC-Universidad de Zaragoza, Zaragoza, Spain.
| | - José M Casas
- Instituto de Síntesis Química y Catálisis Homogénea (iSQCH), CSIC-Universidad de Zaragoza, Zaragoza, Spain.
| | - Antonio Martín
- Instituto de Síntesis Química y Catálisis Homogénea (iSQCH), CSIC-Universidad de Zaragoza, Zaragoza, Spain.
| | - Babil Menjón
- Instituto de Síntesis Química y Catálisis Homogénea (iSQCH), CSIC-Universidad de Zaragoza, Zaragoza, Spain.
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94
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Abstract
We systematically investigated iodine–metal and iodine–iodine bonding in van Koten’s pincer complex and 19 modifications changing substituents and/or the transition metal with a PBE0–D3(BJ)/aug–cc–pVTZ/PP(M,I) model chemistry. As a novel tool for the quantitative assessment of the iodine–metal and iodine–iodine bond strength in these complexes we used the local mode analysis, originally introduced by Konkoli and Cremer, complemented with NBO and Bader’s QTAIM analyses. Our study reveals the major electronic effects in the catalytic activity of the M–I–I non-classical three-center bond of the pincer complex, which is involved in the oxidative addition of molecular iodine I2 to the metal center. According to our investigations the charge transfer from the metal to the σ* antibonding orbital of the I–I bond changes the 3c–4e character of the M–I–I three-center bond, which leads to weakening of the iodine I–I bond and strengthening of the metal–iodine M–I bond, facilitating in this way the oxidative addition of I2 to the metal. The charge transfer can be systematically modified by substitution at different places of the pincer complex and by different transition metals, changing the strength of both the M–I and the I2 bonds. We also modeled for the original pincer complex how solvents with different polarity influence the 3c–4e character of the M–I–I bond. Our results provide new guidelines for the design of pincer complexes with specific iodine–metal bond strengths and introduce the local vibrational mode analysis as an efficient tool to assess the bond strength in complexes.
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95
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Kurzydłowski D, Derzsi M, Zurek E, Grochala W. Fluorides of Silver Under Large Compression*. Chemistry 2021; 27:5536-5545. [PMID: 33471421 DOI: 10.1002/chem.202100028] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Indexed: 11/10/2022]
Abstract
The silver-fluorine phase diagram has been scrutinized as a function of external pressure using theoretical methods. Our results indicate that two novel stoichiometries containing Ag+ and Ag2+ cations (Ag3 F4 and Ag2 F3 ) are thermodynamically stable at ambient and low pressure. Both are computed to be magnetic semiconductors under ambient pressure conditions. For Ag2 F5 , containing both Ag2+ and Ag3+ , we find that strong 1D antiferromagnetic coupling is retained throughout the pressure-induced phase transition sequence up to 65 GPa. Our calculations show that throughout the entire pressure range of their stability the mixed-valence fluorides preserve a finite band gap at the Fermi level. We also confirm the possibility of synthesizing AgF4 as a paramagnetic compound at high pressure. Our results indicate that this compound is metallic in its thermodynamic stability region. Finally, we present general considerations on the thermodynamic stability of mixed-valence compounds of silver at high pressure.
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Affiliation(s)
- Dominik Kurzydłowski
- Faculty of Mathematics and Natural Sciences, Cardinal Stefan Wyszyński University Warsaw, Wóycickiego 1/3, 01-938, Warsaw, Poland
| | - Mariana Derzsi
- Advanced Technologies Research Institute, Faculty of Materials Science and Technology in Trnava, Slovak University of Technology in Bratislava, Jána Bottu 8857/25, 917-24, Trnava, Slovakia.,Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland
| | - Eva Zurek
- Department of Chemistry, State University of New York at Buffalo, 777 Natural Sciences Complex, Buffalo, New York, 14260-3000, USA
| | - Wojciech Grochala
- Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland
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96
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Boudjelel M, Zhai F, Schrock RR, Hoveyda AH, Tsay C. Oxo 2-Adamantylidene Complexes of Mo(VI) and W(VI). Organometallics 2021. [DOI: 10.1021/acs.organomet.1c00086] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Maxime Boudjelel
- Department of Chemistry, University of California at Riverside, Riverside, California 92521, United States
| | - Feng Zhai
- Department of Chemistry 6-331, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Richard R. Schrock
- Department of Chemistry 6-331, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, University of California at Riverside, Riverside, California 92521, United States
| | - Amir H. Hoveyda
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467, United States
| | - Charlene Tsay
- Department of Chemistry, University of California at Riverside, Riverside, California 92521, United States
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97
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Manceau A, Bourdineaud JP, Oliveira RB, Sarrazin SLF, Krabbenhoft DP, Eagles-Smith CA, Ackerman JT, Stewart AR, Ward-Deitrich C, Del Castillo Busto ME, Goenaga-Infante H, Wack A, Retegan M, Detlefs B, Glatzel P, Bustamante P, Nagy KL, Poulin BA. Demethylation of Methylmercury in Bird, Fish, and Earthworm. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:1527-1534. [PMID: 33476127 DOI: 10.1021/acs.est.0c04948] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Toxicity of methylmercury (MeHg) to wildlife and humans results from its binding to cysteine residues of proteins, forming MeHg-cysteinate (MeHgCys) complexes that hinder biological functions. MeHgCys complexes can be detoxified in vivo, yet how this occurs is unknown. We report that MeHgCys complexes are transformed into selenocysteinate [Hg(Sec)4] complexes in multiple animals from two phyla (a waterbird, freshwater fish, and earthworms) sampled in different geographical areas and contaminated by different Hg sources. In addition, high energy-resolution X-ray absorption spectroscopy (HR-XANES) and chromatography-inductively coupled plasma mass spectrometry of the waterbird liver support the binding of Hg(Sec)4 to selenoprotein P and biomineralization of Hg(Sec)4 to chemically inert nanoparticulate mercury selenide (HgSe). The results provide a foundation for understanding mercury detoxification in higher organisms and suggest that the identified MeHgCys to Hg(Sec)4 demethylation pathway is common in nature.
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Affiliation(s)
- Alain Manceau
- Université Grenoble Alpes, ISTerre, CNRS, Grenoble 38000, France
| | - Jean-Paul Bourdineaud
- Université de Bordeaux, Institut Européen de Chimie et Biologie, CNRS, Pessac 33600, France
| | - Ricardo B Oliveira
- Universidade Federal do Oeste Pará, LabBBEx, Santarém 68180-000, Pará, Brazil
| | - Sandra L F Sarrazin
- Universidade Federal do Oeste Pará, LabBBEx, Santarém 68180-000, Pará, Brazil
| | - David P Krabbenhoft
- Upper Midwest Water Science Center, U.S. Geological Survey, Middleton 53562, Wisconsin, United States
| | - Collin A Eagles-Smith
- Forest and Rangeland Ecosystem Science Center, U.S. Geological Survey, Corvallis 97330, Oregon, United States
| | - Joshua T Ackerman
- Western Ecological Research Center, U.S. Geological Survey, Dixon Field Station, Dixon 95620, California, United States
| | - A Robin Stewart
- U.S. Geological Survey, Water Resources Mission Area, Menlo Park 94025, California, United States
| | | | | | | | - Aude Wack
- Université Grenoble Alpes, ISTerre, CNRS, Grenoble 38000, France
| | - Marius Retegan
- European Synchrotron Radiation Facility (ESRF), Grenoble 38000, France
| | - Blanka Detlefs
- European Synchrotron Radiation Facility (ESRF), Grenoble 38000, France
| | - Pieter Glatzel
- European Synchrotron Radiation Facility (ESRF), Grenoble 38000, France
| | - Paco Bustamante
- Université La Rochelle, CNRS, Littoral Environnement et Sociétés, La Rochelle 17000, France
| | - Kathryn L Nagy
- Department of Earth and Environmental Sciences, University of Illinois at Chicago, Chicago 60607, Illinois, United States
| | - Brett A Poulin
- U.S. Geological Survey, Water Resources Mission Area, Boulder 80303, Colorado, United States
- Department of Environmental Toxicology, University of California Davis, Davis 95616, California, United States
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98
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de Macedo LGM, Neves ER, de Oliveira Só YA, Gargano R. Relativistic four-component potential energy curves for the lowest 23 covalent states of molecular astatine (At 2). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 245:118869. [PMID: 32920438 DOI: 10.1016/j.saa.2020.118869] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 08/13/2020] [Accepted: 08/18/2020] [Indexed: 06/11/2023]
Abstract
The potential energy curves (PECs) of all covalent states of Molecular Astatine (At2) have been investigated in this work within a four-component relativistic framework using the MOLFDIR program package. The ground state was determined using multireference configuration interaction with all single and double excitations including Davidson size-extensivity correction (MRCISD+Q) whereas the 22 excited states were treated by complete open shell configuration interaction (COSCI). Spectroscopic constants (Re,ωe,ωexe,ωeye, De,Be,αe,βe,Te) are presented for all states as well as vertical excitations obtained at COSCI, MRCISD and MRCISD+Q levels. In addition, it is also presented accurate extended Rydberg analytical form for the ground state X: (1)0g+.
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Affiliation(s)
| | - Eric Rafael Neves
- Universidade Federal de São João del Rei, Campus Centro Oeste Dona Lindu (CCO/UFSJ) Divinópolis, MG, CEP 35501-296, Brazil
| | | | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília (UnB), P.O. Box 04455, Brasília, DF 70919-970, Brazil
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99
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Feng R, Duignan TJ, Autschbach J. Electron-Nucleus Hyperfine Coupling Calculated from Restricted Active Space Wavefunctions and an Exact Two-Component Hamiltonian. J Chem Theory Comput 2021; 17:255-268. [PMID: 33385321 DOI: 10.1021/acs.jctc.0c01005] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Exact two-component (X2C) relativistic nuclear hyperfine magnetic field operators were incorporated in X2C ab initio wavefunction calculations at the multireference restricted active space (RAS) level for calculations of nuclear hyperfine magnetic properties. Spin-orbit coupling was treated via RAS state interaction (SO-RASSI). The method was tested by calculations of electron-nucleus hyperfine coupling constants. The approach, implemented in the OpenMolcas program, overcomes a major limitation of a previous SO-RASSI implementation for hyperfine coupling that relied on nonrelativistic hyperfine operators [J. Chem. Theor. Comput. 2015, 11, 538-549] and therefore had limited applicability. Results from calculations on systems with light and heavy main group elements, transition metals, lanthanides, and one actinide complex demonstrate reasonably good agreement with experimental data, where available, as long as the active space can generate sufficient spin polarization.
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Affiliation(s)
- Rulin Feng
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
| | - Thomas J Duignan
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
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Cao C, Vernon RE, Schwarz WHE, Li J. Understanding Periodic and Non-periodic Chemistry in Periodic Tables. Front Chem 2021; 8:813. [PMID: 33490030 PMCID: PMC7818537 DOI: 10.3389/fchem.2020.00813] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Accepted: 08/03/2020] [Indexed: 12/15/2022] Open
Abstract
The chemical elements are the "conserved principles" or "kernels" of chemistry that are retained when substances are altered. Comprehensive overviews of the chemistry of the elements and their compounds are needed in chemical science. To this end, a graphical display of the chemical properties of the elements, in the form of a Periodic Table, is the helpful tool. Such tables have been designed with the aim of either classifying real chemical substances or emphasizing formal and aesthetic concepts. Simplified, artistic, or economic tables are relevant to educational and cultural fields, while practicing chemists profit more from "chemical tables of chemical elements." Such tables should incorporate four aspects: (i) typical valence electron configurations of bonded atoms in chemical compounds (instead of the common but chemically atypical ground states of free atoms in physical vacuum); (ii) at least three basic chemical properties (valence number, size, and energy of the valence shells), their joint variation across the elements showing principal and secondary periodicity; (iii) elements in which the (sp)8, (d)10, and (f)14 valence shells become closed and inert under ambient chemical conditions, thereby determining the "fix-points" of chemical periodicity; (iv) peculiar elements at the top and at the bottom of the Periodic Table. While it is essential that Periodic Tables display important trends in element chemistry we need to keep our eyes open for unexpected chemical behavior in ambient, near ambient, or unusual conditions. The combination of experimental data and theoretical insight supports a more nuanced understanding of complex periodic trends and non-periodic phenomena.
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Affiliation(s)
- Changsu Cao
- Department of Chemistry, Tsinghua University, Beijing, China
| | | | - W. H. Eugen Schwarz
- Department of Chemistry, Tsinghua University, Beijing, China
- Department of Chemistry, University of Siegen, Siegen, Germany
| | - Jun Li
- Department of Chemistry, Tsinghua University, Beijing, China
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, China
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