The malaria secretome: from algorithms to essential function in blood stage infection.
PLoS Pathog 2008;
4:e1000084. [PMID:
18551176 PMCID:
PMC2408878 DOI:
10.1371/journal.ppat.1000084]
[Citation(s) in RCA: 116] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2007] [Accepted: 05/07/2008] [Indexed: 01/15/2023] Open
Abstract
The malaria agent Plasmodium falciparum is predicted to export a “secretome” of several hundred proteins to remodel the host erythrocyte. Prediction of protein export is based on the presence of an ER-type signal sequence and a downstream Host-Targeting (HT) motif (which is similar to, but distinct from, the closely related Plasmodium Export Element [PEXEL]). Previous attempts to determine the entire secretome, using either the HT-motif or the PEXEL, have yielded large sets of proteins, which have not been comprehensively tested. We present here an expanded secretome that is optimized for both P. falciparum signal sequences and the HT-motif. From the most conservative of these three secretome predictions, we identify 11 proteins that are preserved across human- and rodent-infecting Plasmodium species. The conservation of these proteins likely indicates that they perform important functions in the interaction with and remodeling of the host erythrocyte important for all Plasmodium parasites. Using the piggyBac transposition system, we validate their export and find a positive prediction rate of ∼70%. Even for proteins identified by all secretomes, the positive prediction rate is not likely to exceed ∼75%. Attempted deletions of the genes encoding the conserved exported proteins were not successful, but additional functional analyses revealed the first conserved secretome function. This gave new insight into mechanisms for the assembly of the parasite-induced tubovesicular network needed for import of nutrients into the infected erythrocyte. Thus, genomic screens combined with functional assays provide unexpected and fundamental insights into host remodeling by this major human pathogen.
The parasite Plasmodium falciparum causes malaria by replicating inside red blood cells of infected individuals. By exporting many different proteins into the host cell, the parasite changes many of its properties. Knowledge of the identity and function of all the exported proteins will both increase our understanding of the modifications required for parasite survival and provide us with targets that can be inhibited to block the growth of the parasites. Several years ago, a motif within the exported proteins was discovered that allowed them to be exported, which was used to predict the total set of proteins exported to the host cell (the secretome). We show here that the earlier studies have either under- or overestimated the total number of proteins exported into the host cell, and derive a more accurate prediction of proteins exported to the host cell. We validate the predictions by making parasites that express a fusion of predicted exported proteins to the Green Fluorescent Protein (which allows the localization of the protein to be determined visually). This revealed a positive prediction rate of ∼70%. In addition, several proteins were identified that are very likely to play an essential role in infection, with at least one involved in the formation of a structure required for nutrient import.
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