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Abstract
Ramularia is a species-rich genus that harbours plant pathogens responsible for yield losses to many important crops, including barley, sugar beet and strawberry. Species of Ramularia are hyphomycetes with hyaline conidiophores and conidia with distinct, thickened, darkened, refractive conidiogenous loci and conidial hila, and Mycosphaerella sexual morphs. Because of its simple morphology and general lack of DNA data in public databases, several allied genera are frequently confused with Ramularia. In order to improve the delimitation of Ramularia from allied genera and the circumscription of species within the genus Ramularia, a polyphasic approach based on multilocus DNA sequences, morphological and cultural data were used in this study. A total of 420 isolates belonging to Ramularia and allied genera were targeted for the amplification and sequencing of six partial genes. Although Ramularia and Ramulariopsis proved to be monophyletic, Cercosporella and Pseudocercosporella were polyphyletic. Phacellium isolates clustered within the Ramularia clade and the genus is thus tentatively reduced to synonymy under Ramularia. Cercosporella and Pseudocercosporella isolates that were not congeneric with the ex-type strains of the type species of those genera were assigned to existing genera or to the newly introduced genera Teratoramularia and Xenoramularia, respectively. Teratoramularia is a genus with ramularia-like morphology belonging to the Teratosphaeriaceae, and Xenoramularia was introduced to accommodate hyphomycetous species closely related to Zymoseptoria. The genera Apseudocercosporella, Epicoleosporium, Filiella, Fusidiella, Neopseudocercosporella, and Mycosphaerelloides were also newly introduced to accommodate species non-congeneric with their purported types. A total of nine new combinations and 24 new species were introduced in this study.
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Key Words
- Acrodontium fagicola Videira & Crous
- Acrodontium luzulae Videira & Crous
- Acrodontium pigmentosum Videira & Crous
- Apseudocercosporella Videira & Crous
- Apseudocercosporella trigonotidis Videira, H.D. Shin & Crous
- Barcoding
- Cercosporella catenulata Videira & Crous
- Cercosporella gossypii Speg.
- Cercosporoid
- Crocysporium rubellum Bonord.
- Cylindrosporium heraclei Oudem.
- Epicoleosporium Videira & Crous
- Epicoleosporium ramularioides Videira, H.D. Shin & Crous
- Filiella Videira & Crous
- Filiella pastinacae (P. Karst.) Videira & Crous
- Fusoidiella Videira & Crous
- Fusoidiella depressa (Berk. & Broome) Videira & Crous
- Fusoma inaequale Preuss
- Multilocus phylogeny
- Mycosphaerella
- Mycosphaerelloides Videira & Crous
- Mycosphaerelloides madeirae (Crous & Denman) Videira & Crous
- Neopseudocercosporella Videira & Crous
- Neopseudocercosporella brassicae (Chevall.) Videira & Crous
- Neopseudocercosporella capsellae (Ellis & Everh.) Videira & Crous
- Ovularia tovarae Sawada
- Plant pathogen
- Ramularia acroptili Bremer
- Ramularia alangiicola Videira, H.D. Shin & Crous
- Ramularia aplospora Speg.
- Ramularia armoraciae Fuckel
- Ramularia beticola Fautrey & Lambotte
- Ramularia cerastiicola (Crous) Videira & Crous
- Ramularia collo-cygni B. Sutton & J.M. Waller
- Ramularia euonymicola Videira, H.D. Shin, U. Braun & Crous
- Ramularia gaultheriae Videira & Crous
- Ramularia geranii Fuckel
- Ramularia geraniicola Videira & Crous
- Ramularia kriegeriana Bres
- Ramularia lamii Fuckel var. lamii
- Ramularia malicola Videira & Crous
- Ramularia neodeusta Videira & Crous
- Ramularia osterici Videira, H.D. Shin & Crous
- Ramularia pusilla Unger
- Ramularia rumicicola Videira, H.D. Shin & Crous
- Ramularia stellariicola (M.J. Park et al.) Videira, H.D. Shin & Crous
- Ramularia trigonotidis Videira, H.D. Shin & Crous
- Ramularia vallisumbrosae Cavara
- Ramularia variabilis Fuckel
- Ramularia veronicicola Videira & Crous
- Ramularia weberiana Videira & Crous
- Ramulariopsis pseudoglycines Videira, Crous & Braun
- Sphaerulina chaenomelis (Y. Suto) Videira, U. Braun, H.D. Shin & Crous
- Sphaerulina koreana (Crous et al.) Videira, H.D. Shin & Crous
- Teratoramularia Videira, H.D. Shin & Crous
- Teratoramularia infinita Videira & Crous
- Teratoramularia kirschneriana Videira & Crous
- Teratoramularia persicariae Videira, H.D. Shin & Crous
- Teratoramularia rumicicola Videira, H.D. Shin & Crous
- Xenoramularia Videira, H.D. Shin & Crous
- Xenoramularia arxii Videira & Crous
- Xenoramularia neerlandica Videira & Crous
- Xenoramularia polygonicola Videira, H.D. Shin & Crous
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Affiliation(s)
- S.I.R. Videira
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - U. Braun
- Martin-Luther-Universität, Institut für Biologie, Bereich Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle (Saale), Germany
| | - H.D. Shin
- Division of Environmental Science and Ecological Engineering, Korea University, Seoul 02841, Korea
| | - P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa
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52
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Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat DJ, McKenzie EHC, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai DQ, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Bahkali AH, Wang Y. Taxonomy and phylogeny of dematiaceous coelomycetes. FUNGAL DIVERS 2016. [DOI: 10.1007/s13225-016-0360-2] [Citation(s) in RCA: 99] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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53
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Abstract
The Didymellaceae was established in 2009 to accommodate Ascochyta, Didymella and Phoma, as well as several related phoma-like genera. The family contains numerous plant pathogenic, saprobic and endophytic species associated with a wide range of hosts. Ascochyta and Phoma are morphologically difficult to distinguish, and species from both genera have in the past been linked to Didymella sexual morphs. The aim of the present study was to clarify the generic delimitation in Didymellaceae by combing multi-locus phylogenetic analyses based on ITS, LSU, rpb2 and tub2, and morphological observations. The resulting phylogenetic tree revealed 17 well-supported monophyletic clades in Didymellaceae, leading to the introduction of nine genera, three species, two nomina nova and 84 combinations. Furthermore, 11 epitypes and seven neotypes were designated to help stabilise the taxonomy and use of names. As a result of these data, Ascochyta, Didymella and Phoma were delineated as three distinct genera, and the generic circumscriptions of Ascochyta, Didymella, Epicoccum and Phoma emended. Furthermore, the genus Microsphaeropsis, which is morphologically distinct from the members of Didymellaceae, grouped basal to the Didymellaceae, for which a new family Microsphaeropsidaceae was introduced.
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Affiliation(s)
- Q. Chen
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 West Beichen Rd, Chaoyang District, Beijing 100101, China
| | - J.R. Jiang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 West Beichen Rd, Chaoyang District, Beijing 100101, China
| | - G.Z. Zhang
- College of Agriculture and Biotechnology, China Agricultural University, No. 2 West Yuanmingyuan Rd, Haidian District, Beijing 100193, China
| | - L. Cai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 West Beichen Rd, Chaoyang District, Beijing 100101, China
| | - P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa
- Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
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Tanaka K, Hirayama K, Yonezawa H, Sato G, Toriyabe A, Kudo H, Hashimoto A, Matsumura M, Harada Y, Kurihara Y, Shirouzu T, Hosoya T. Revision of the Massarineae (Pleosporales, Dothideomycetes). Stud Mycol 2015; 82:75-136. [PMID: 26955201 PMCID: PMC4774272 DOI: 10.1016/j.simyco.2015.10.002] [Citation(s) in RCA: 133] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
We here taxonomically revise the suborder Massarineae (Pleosporales, Dothideomycetes, Ascomycota). Sequences of SSU and LSU nrDNA and the translation elongation factor 1-alpha gene (tef1) are newly obtained from 106 Massarineae taxa that are phylogenetically analysed along with published sequences of 131 taxa in this suborder retrieved from GenBank. We recognise 12 families and five unknown lineages in the Massarineae. Among the nine families previously known, the monophyletic status of the Dictyosporiaceae, Didymosphaeriaceae, Latoruaceae, Macrodiplodiopsidaceae, Massarinaceae, Morosphaeriaceae, and Trematosphaeriaceae was strongly supported with bootstrap support values above 96 %, while the clades of the Bambusicolaceae and the Lentitheciaceae are moderately supported. Two new families, Parabambusicolaceae and Sulcatisporaceae, are proposed. The Parabambusicolaceae is erected to accommodate Aquastroma and Parabambusicola genera nova, as well as two unnamed Monodictys species. The Parabambusicolaceae is characterised by depressed globose to hemispherical ascomata with or without surrounding stromatic tissue, and multi-septate, clavate to fusiform, hyaline ascospores. The Sulcatisporaceae is established for Magnicamarosporium and Sulcatispora genera nova and Neobambusicola. The Sulcatisporaceae is characterised by subglobose ascomata with a short ostiolar neck, trabeculate pseudoparaphyses, clavate asci, broadly fusiform ascospores, and ellipsoid to subglobose conidia with or without striate ornamentation. The genus Periconia and its relatives are segregated from the Massarinaceae and placed in a resurrected family, the Periconiaceae. We have summarised the morphological and ecological features, and clarified the accepted members of each family. Ten new genera, 22 new species, and seven new combinations are described and illustrated. The complete ITS sequences of nrDNA are also provided for all new taxa for use as barcode markers.
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Affiliation(s)
- K. Tanaka
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - K. Hirayama
- Apple Experiment Station, Aomori Prefectural Agriculture and Forestry Research Center, 24 Fukutami, Botandaira, Kuroishi, Aomori 036-0332, Japan
| | - H. Yonezawa
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - G. Sato
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - A. Toriyabe
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - H. Kudo
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - A. Hashimoto
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
- The United Graduate School of Agricultural Sciences, Iwate University, 18-8 Ueda 3 chome, Morioka 020-8550, Japan
| | - M. Matsumura
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - Y. Harada
- Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - Y. Kurihara
- OPBIO Factory, 5-8 Suzaki, Uruma, Okinawa 904-2234, Japan
| | - T. Shirouzu
- Department of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki 305-0005, Japan
| | - T. Hosoya
- Department of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki 305-0005, Japan
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55
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Bakhshi M, Arzanlou M, Babai-ahari A, Groenewald J, Braun U, Crous P. Application of the consolidated species concept to Cercospora spp. from Iran. PERSOONIA 2015; 34:65-86. [PMID: 26240446 PMCID: PMC4510272 DOI: 10.3767/003158515x685698] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2014] [Accepted: 06/04/2014] [Indexed: 11/25/2022]
Abstract
The genus Cercospora includes many important plant pathogenic fungi associated with leaf spot diseases on a wide range of hosts. The mainland of Iran covers various climatic regions with a great biodiversity of vascular plants, and a correspondingly high diversity of cercosporoid fungi. However, most of the cercosporoid species found to date have been identified on the basis of morphological characteristics and there are no cultures that support these identifications. In this study the Consolidated Species Concept was applied to differentiate Cercospora species collected from Iran. A total of 161 Cercospora isolates recovered from 74 host species in northern Iran were studied by molecular phylogenetic analysis. Our results revealed a rich diversity of Cercospora species in northern Iran. Twenty species were identified based on sequence data of five genomic loci (ITS, TEF1-α, actin, calmodulin and histone H3), host, cultural and morphological data. Six novel species, viz. C. convolvulicola, C. conyzae-canadensis, C. cylindracea, C. iranica, C. pseudochenopodii and C. sorghicola, are introduced. The most common taxon was Cercospora cf. flagellaris, which remains an unresolved species complex with a wide host range. New hosts were recorded for previously known Cercospora species, including C. apii, C. armoraciae, C. beticola, C. cf. richardiicola, C. rumicis, Cercospora sp. G and C. zebrina.
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Affiliation(s)
- M. Bakhshi
- Plant Protection Department, Faculty of Agriculture, University of Tabriz, P.O. Box 5166614766, Tabriz, Iran
| | - M. Arzanlou
- Plant Protection Department, Faculty of Agriculture, University of Tabriz, P.O. Box 5166614766, Tabriz, Iran
| | - A. Babai-ahari
- Plant Protection Department, Faculty of Agriculture, University of Tabriz, P.O. Box 5166614766, Tabriz, Iran
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - U. Braun
- Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Neuwerk 21, D-06099 Halle (Saale), Germany
| | - P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa
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56
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Crous P, Wingfield M, Schumacher R, Summerell B, Giraldo A, Gené J, Guarro J, Wanasinghe D, Hyde K, Camporesi E, Gareth Jones E, Thambugala K, Malysheva E, Malysheva V, Acharya K, Álvarez J, Alvarado P, Assefa A, Barnes C, Bartlett J, Blanchette R, Burgess T, Carlavilla J, Coetzee M, Damm U, Decock C, den Breeÿen A, de Vries B, Dutta A, Holdom D, Rooney-Latham S, Manjón J, Marincowitz S, Mirabolfathy M, Moreno G, Nakashima C, Papizadeh M, Shahzadeh Fazeli S, Amoozegar M, Romberg M, Shivas R, Stalpers J, Stielow B, Stukely M, Swart W, Tan Y, van der Bank M, Wood A, Zhang Y, Groenewald J. Fungal Planet description sheets: 281-319. PERSOONIA 2014; 33:212-89. [PMID: 25737601 PMCID: PMC4312934 DOI: 10.3767/003158514x685680] [Citation(s) in RCA: 116] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Accepted: 10/18/2014] [Indexed: 11/25/2022]
Abstract
Novel species of fungi described in the present study include the following from South Africa: Alanphillipsia aloeicola from Aloe sp., Arxiella dolichandrae from Dolichandra unguiscati, Ganoderma austroafricanum from Jacaranda mimosifolia, Phacidiella podocarpi and Phaeosphaeria podocarpi from Podocarpus latifolius, Phyllosticta mimusopisicola from Mimusops zeyheri and Sphaerulina pelargonii from Pelargonium sp. Furthermore, Barssia maroccana is described from Cedrus atlantica (Morocco), Codinaea pini from Pinus patula (Uganda), Crucellisporiopsis marquesiae from Marquesia acuminata (Zambia), Dinemasporium ipomoeae from Ipomoea pes-caprae (Vietnam), Diaporthe phragmitis from Phragmites australis (China), Marasmius vladimirii from leaf litter (India), Melanconium hedericola from Hedera helix (Spain), Pluteus albotomentosus and Pluteus extremiorientalis from a mixed forest (Russia), Rachicladosporium eucalypti from Eucalyptus globulus (Ethiopia), Sistotrema epiphyllum from dead leaves of Fagus sylvatica in a forest (The Netherlands), Stagonospora chrysopyla from Scirpus microcarpus (USA) and Trichomerium dioscoreae from Dioscorea sp. (Japan). Novel species from Australia include: Corynespora endiandrae from Endiandra introrsa, Gonatophragmium triuniae from Triunia youngiana, Penicillium coccotrypicola from Archontophoenix cunninghamiana and Phytophthora moyootj from soil. Novelties from Iran include Neocamarosporium chichastianum from soil and Seimatosporium pistaciae from Pistacia vera. Xenosonderhenia eucalypti and Zasmidium eucalyptigenum are newly described from Eucalyptus urophylla in Indonesia. Diaporthe acaciarum and Roussoella acacia are newly described from Acacia tortilis in Tanzania. New species from Italy include Comoclathris spartii from Spartium junceum and Phoma tamaricicola from Tamarix gallica. Novel genera include (Ascomycetes): Acremoniopsis from forest soil and Collarina from water sediments (Spain), Phellinocrescentia from a Phellinus sp. (French Guiana), Neobambusicola from Strelitzia nicolai (South Africa), Neocladophialophora from Quercus robur (Germany), Neophysalospora from Corymbia henryi (Mozambique) and Xenophaeosphaeria from Grewia sp. (Tanzania). Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa.
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Affiliation(s)
- P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria, 0028, South Africa
| | | | - B.A. Summerell
- Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, NSW 2000, Australia
| | - A. Giraldo
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - J. Guarro
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - D.N. Wanasinghe
- World Agro forestry Centre East and Central Asia Ofӿce, 132 Lanhei Road, Kunming 650201, China
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science,Kunming 650201, Yunnan China
- Institute of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - K.D. Hyde
- World Agro forestry Centre East and Central Asia Ofӿce, 132 Lanhei Road, Kunming 650201, China
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science,Kunming 650201, Yunnan China
- Institute of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - E. Camporesi
- A.M.B. Gruppo Micologico Forlivese ‘Antonio Cicognani’, Via Roma 18, Forlì, Italy and A.M.B. Circolo Micologico ‘Giovanni Carini’,C.P.314,Brescia, Italy
- Società per gli Studi Naturalisticidella Romagna, C.P. 144, Bagnacavallo (RA), Italy
| | - E.B. Gareth Jones
- Department of Botany and Microbiology, College of Science, King Saudi University, Riyadh, Saudi Arabia
| | - K.M. Thambugala
- Institute of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province 550006, People’s Republic of China
| | - E.F. Malysheva
- Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov St. 2, RUS-197376, Saint Petersburg, Russia
| | - V.F. Malysheva
- Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov St. 2, RUS-197376, Saint Petersburg, Russia
| | - K. Acharya
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - J. Álvarez
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - P. Alvarado
- ALVALAB, La Rochela 47, E-39012, Santander, Spain
| | - A. Assefa
- Department of Biology, Madawalabu University, P.O. Box 247, Bale Robe, Ethiopia
| | - C.W. Barnes
- Centro de Investigación, Estudios y Desarrollo de Ingeniería (CIEDI), Facultad de Ingenierías y Ciencias Agropecuarias (FICA), Universidad de Las Américas, Calle José Queri s/n entre Av. Granados y Av. Eloy Alfaro, Quito, Ecuador
| | - J.S. Bartlett
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - R.A. Blanchette
- University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108, USA
| | - T.I. Burgess
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - J.R. Carlavilla
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - M.P.A. Coetzee
- Department of Genetics, Centre of Excellence in Tree Health Biotechnology (CTHB), Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, P. Bag X20, Pretoria, 0028, South Africa
| | - U. Damm
- Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany
| | - C.A. Decock
- Mycothèque de l’Université catholique de Louvain (MUCL, BCCM), Earth and Life Institute – ELIM – Mycology, Université catholique de Louvain, Croix du Sud 2 bte L7.05.06, B-1348 Louvain-la-Neuve, Belgium
| | - A. den Breeÿen
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - B. de Vries
- Roerdomplaan 222, 7905 EL Hoogeveen, The Netherlands
| | - A.K. Dutta
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - D.G. Holdom
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - S. Rooney-Latham
- California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA 95832, USA
| | - J.L. Manjón
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - S. Marincowitz
- Department of Genetics, Centre of Excellence in Tree Health Biotechnology (CTHB), Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, P. Bag X20, Pretoria, 0028, South Africa
| | - M. Mirabolfathy
- Iranian Research Institute of Plant Protection, Tehran, Iran
| | - G. Moreno
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - C. Nakashima
- Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie 514-8507, Japan
| | - M. Papizadeh
- Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR) Tehran, Iran
| | - S.A. Shahzadeh Fazeli
- Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR) Tehran, Iran
| | - M.A. Amoozegar
- Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR) Tehran, Iran
| | - M.K. Romberg
- USDA APHIS PPQ NIS, 10300 Baltimore Ave, Beltsville, MD 20705, USA
| | - R.G. Shivas
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - J.A. Stalpers
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - B. Stielow
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M.J.C. Stukely
- Science Division, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, WA 6983, Australia
| | - W.J. Swart
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - Y.P. Tan
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - M. van der Bank
- Department of Botany and Plant Biotechnology, University of Johannesburg, P.O. Box 524, Auckland Park, 2006, South Africa
| | - A.R. Wood
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - Y. Zhang
- Institute of Microbiology, Beijing Forestry University, P.O. Box 61, Beijing 100083, PR China
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names. FUNGAL DIVERS 2014; 69:1-55. [PMID: 27284275 DOI: 10.1007/s13225-014-0309-2] [Citation(s) in RCA: 150] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became effective from 30 July 2011. Since that date, each fungal species can have one nomenclaturally correct name in a particular classification. All other previously used names for this species will be considered as synonyms. The older generic epithet takes priority over the younger name. Any widely used younger names proposed for use, must comply with Art. 57.2 and their usage should be approved by the Nomenclature Committee for Fungi (NCF). In this paper, we list all genera currently accepted by us in Dothideomycetes (belonging to 23 orders and 110 families), including pleomorphic and nonpleomorphic genera. In the case of pleomorphic genera, we follow the rulings of the current ICN and propose single generic names for future usage. The taxonomic placements of 1261 genera are listed as an outline. Protected names and suppressed names for 34 pleomorphic genera are listed separately. Notes and justifications are provided for possible proposed names after the list of genera. Notes are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes. A phylogenetic tree based on four gene analyses supported 23 orders and 75 families, while 35 families still lack molecular data.
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Crous P, Shivas R, Quaedvlieg W, van der Bank M, Zhang Y, Summerell B, Guarro J, Wingfield M, Wood A, Alfenas A, Braun U, Cano-Lira J, García D, Marin-Felix Y, Alvarado P, Andrade J, Armengol J, Assefa A, den Breeÿen A, Camele I, Cheewangkoon R, De Souza J, Duong T, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal D, King A, Lechat C, Lombard L, Mang S, Marbach P, Marincowitz S, Marin-Felix Y, Montaño-Mata N, Moreno G, Perez C, Pérez Sierra A, Robertson J, Roux J, Rubio E, Schumacher R, Stchigel A, Sutton D, Tan Y, Thompson E, van der Linde E, Walker A, Walker D, Wickes B, Wong P, Groenewald J. Fungal Planet description sheets: 214-280. PERSOONIA 2014; 32:184-306. [PMID: 25264390 PMCID: PMC4150077 DOI: 10.3767/003158514x682395] [Citation(s) in RCA: 183] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/01/2014] [Accepted: 05/19/2014] [Indexed: 11/25/2022]
Abstract
Novel species of microfungi described in the present study include the following from South Africa: Cercosporella dolichandrae from Dolichandra unguiscati, Seiridium podocarpi from Podocarpus latifolius, Pseudocercospora parapseudarthriae from Pseudarthria hookeri, Neodevriesia coryneliae from Corynelia uberata on leaves of Afrocarpus falcatus, Ramichloridium eucleae from Euclea undulata and Stachybotrys aloeticola from Aloe sp. (South Africa), as novel member of the Stachybotriaceae fam. nov. Several species were also described from Zambia, and these include Chaetomella zambiensis on unknown Fabaceae, Schizoparme pseudogranati from Terminalia stuhlmannii, Diaporthe isoberliniae from Isoberlinia angolensis, Peyronellaea combreti from Combretum mossambiciensis, Zasmidium rothmanniae and Phaeococcomyces rothmanniae from Rothmannia engleriana, Diaporthe vangueriae from Vangueria infausta and Diaporthe parapterocarpi from Pterocarpus brenanii. Novel species from the Netherlands include: Stagonospora trichophoricola, Keissleriella trichophoricola and Dinemasporium trichophoricola from Trichophorum cespitosum, Phaeosphaeria poae, Keissleriella poagena, Phaeosphaeria poagena, Parastagonospora poagena and Pyrenochaetopsis poae from Poa sp., Septoriella oudemansii from Phragmites australis and Dendryphion europaeum from Hedera helix (Germany) and Heracleum sphondylium (the Netherlands). Novel species from Australia include: Anungitea eucalyptorum from Eucalyptus leaf litter, Beltraniopsis neolitseae and Acrodontium neolitseae from Neolitsea australiensis, Beltraniella endiandrae from Endiandra introrsa, Phaeophleospora parsoniae from Parsonia straminea, Penicillifer martinii from Cynodon dactylon, Ochroconis macrozamiae from Macrozamia leaf litter, Triposporium cycadicola, Circinotrichum cycadis, Cladosporium cycadicola and Acrocalymma cycadis from Cycas spp. Furthermore, Vermiculariopsiella dichapetali is described from Dichapetalum rhodesicum (Botswana), Ophiognomonia acadiensis from Picea rubens (Canada), Setophoma vernoniae from Vernonia polyanthes and Penicillium restingae from soil (Brazil), Pseudolachnella guaviyunis from Myrcianthes pungens (Uruguay) and Pseudocercospora neriicola from Nerium oleander (Italy). Novelties from Spain include: Dendryphiella eucalyptorum from Eucalyptus globulus, Conioscypha minutispora from dead wood, Diplogelasinospora moalensis and Pseudoneurospora canariensis from soil and Inocybe lanatopurpurea from reforested woodland of Pinus spp. Novelties from France include: Kellermania triseptata from Agave angustifolia, Zetiasplozna acaciae from Acacia melanoxylon, Pyrenochaeta pinicola from Pinus sp. and Pseudonectria rusci from Ruscus aculeatus. New species from China include: Dematiocladium celtidicola from Celtis bungeana, Beltrania pseudorhombica, Chaetopsina beijingensis and Toxicocladosporium pini from Pinus spp. and Setophaeosphaeria badalingensis from Hemerocallis fulva. Novel genera of Ascomycetes include Alfaria from Cyperus esculentus (Spain), Rinaldiella from a contaminated human lesion (Georgia), Hyalocladosporiella from Tectona grandis (Brazil), Pseudoacremonium from Saccharum spontaneum and Melnikomyces from leaf litter (Vietnam), Annellosympodiella from Juniperus procera (Ethiopia), Neoceratosperma from Eucalyptus leaves (Thailand), Ramopenidiella from Cycas calcicola (Australia), Cephalotrichiella from air in the Netherlands, Neocamarosporium from Mesembryanthemum sp. and Acervuloseptoria from Ziziphus mucronata (South Africa) and Setophaeosphaeria from Hemerocallis fulva (China). Several novel combinations are also introduced, namely for Phaeosphaeria setosa as Setophaeosphaeria setosa, Phoma heteroderae as Peyronellaea heteroderae and Phyllosticta maydis as Peyronellaea maydis. Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa.
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Affiliation(s)
- P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - R.G. Shivas
- Plant Pathology Herbarium, Department of Agriculture, Forestry and Fisheries, Dutton Park 4102, Queensland, Australia
| | - W. Quaedvlieg
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M. van der Bank
- Department of Botany and Plant Biotechnology, University of Johannesburg, P.O. Box 524, Auckland Park, 2006, South Africa
| | - Y. Zhang
- Institute of Microbiology, Beijing Forestry University, P.O. Box 61, Beijing 100083, PR China
| | - B.A. Summerell
- Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, NSW 2000, Australia
| | - J. Guarro
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa
| | - A.R. Wood
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - A.C. Alfenas
- Department of Plant Pathology, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - U. Braun
- Martin-Luther-Universität, Institut für Biologie, Bereich Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, 06099 Halle (Saale), Germany
| | - J.F. Cano-Lira
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - D. García
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - Y. Marin-Felix
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - P. Alvarado
- ALVALAB, C/ La Rochela nº 47, E-39012, Santander, Spain
| | - J.P. Andrade
- Recôncavo da Bahia Federal University, Bahia, Brazil
| | - J. Armengol
- Instituto Agroforestal Mediterráneo, Universitat Politècnica de Valencia, Camino de Vera S/N,46022 Valencia, Spain
| | - A. Assefa
- Department of Biology, Madawalabu University, P.O. Box 247, Bale Robe, Ethiopia
| | - A. den Breeÿen
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - I. Camele
- School of Agricultural, Forestry, Food and Environmental Sciences, University of Basilicata, Via dell’Ateneo Lucano, 10, 85100 Potenza, Italy
| | - R. Cheewangkoon
- Department of Plant Pathology, Faculty of Agriculture, Chaing Mai University, Chiang Mai 50200, Thailand
| | - J.T. De Souza
- Recôncavo da Bahia Federal University, Bahia, Brazil
| | - T.A. Duong
- Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa
| | - F. Esteve-Raventós
- Departamento de Ciencias de la Vida (Area de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | | | - S. Frisullo
- Department of Agricultural, Food and Environmental Sciences, University of Foggia, Via Napoli, 25, 71100 Foggia, Italy
| | - J. García-Jiménez
- Instituto Agroforestal Mediterráneo, Universitat Politècnica de Valencia, Camino de Vera S/N,46022 Valencia, Spain
| | | | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - M. Hernández-Restrepo
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - Y. Hirooka
- Department of Biology, University of Ottawa, 30 Marie-Curie, Ottawa, Ontario, K1N 6N5, Canada / Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario, K1A 0C6, Canada
| | - D.R. Hospenthal
- Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
| | - A. King
- ARC – Plant Protection Research Institute, P. Bag X134, Queenswood 0121, South Africa
| | - C. Lechat
- Ascofrance, 64 route de Chizé, 79360 Villiers en Bois, France
| | - L. Lombard
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - S.M. Mang
- School of Agricultural, Forestry, Food and Environmental Sciences, University of Basilicata, Via dell’Ateneo Lucano, 10, 85100 Potenza, Italy
| | | | - S. Marincowitz
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa
| | - Y. Marin-Felix
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - N.J. Montaño-Mata
- Escuela de Ingeniería Agronómica, Departamento de Agronomía, Núcleo de Monagas, Venezuela
| | - G. Moreno
- Departamento de Ciencias de la Vida (Area de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - C.A. Perez
- Fitopatología, EEMAC, Departamento de Protección Vegetal, Facultad de Agronomía, Universidad de la República, Ruta 3 km 363, Paysandú, Uruguay
| | - A.M. Pérez Sierra
- Instituto Agroforestal Mediterráneo, Universitat Politècnica de Valencia, Camino de Vera S/N,46022 Valencia, Spain
| | - J.L. Robertson
- Department of Medicine, Eglin Air Force Base, Florida, USA
| | - J. Roux
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa
| | - E. Rubio
- c/ José Cueto Nº3, 33401 Avilés (Asturias), Spain
| | | | - A.M. Stchigel
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201-Reus, Spain
| | - D.A. Sutton
- Fungus Testing Laboratory, Department of Pathology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
| | - Y.P. Tan
- Plant Pathology Herbarium, Department of Agriculture, Forestry and Fisheries, Dutton Park 4102, Queensland, Australia
| | - E.H. Thompson
- Fungus Testing Laboratory, Department of Pathology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
| | - E. van der Linde
- ARC – Plant Protection Research Institute, Biosystematics Division – Mycology, P. Bag X134, Queenswood 0121, South Africa
| | - A.K. Walker
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario, K1S 5B6, Canada / Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario, K1A 0C6, Canada
| | - D.M. Walker
- The University of Findlay, 1000 North Main Street, Findlay, OH 45840 USA
| | - B.L. Wickes
- Department of Microbiology and Immunology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
| | - P.T.W. Wong
- University of Sydney, Plant Breeding Institute, 107 Cobbitty Rd, Cobbitty, New South Wales 2570, Australia
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Verkley G, Dukik K, Renfurm R, Göker M, Stielow J. Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota). PERSOONIA 2014; 32:25-51. [PMID: 25264382 PMCID: PMC4150078 DOI: 10.3767/003158514x679191] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2012] [Accepted: 08/08/2013] [Indexed: 11/25/2022]
Abstract
Based on analyses of concatenated internal transcribed spacer regions of the nrDNA operon (ITS), large subunit rDNA (LSU), γ-actin and β-tubulin gene sequences the taxonomy of coniothyrium-like fungi belonging in the family Montagnulaceae, order Pleosporales, was re-assessed. Two new genera are proposed, Alloconiothyrium, to accommodate A. aptrootii sp. nov., and Dendrothyrium for D. longisporum sp. nov. and D. variisporum sp. nov. One new species is described in Paraconiothyrium, viz. Parac. archidendri sp. nov., while two species so far classified in Paraconiothyrium are transferred to Paraphaeosphaeria, viz. Paraph. minitans comb. nov. and Paraph. sporulosa comb. nov. In Paraphaeosphaeria five new species are described based on asexual morphs, viz. Paraph. arecacearum sp. nov., Paraph. neglecta sp. nov., Paraph. sardoa sp. nov., Paraph. verruculosa sp. nov., and Paraph. viridescens sp. nov. Macro- and micromorphological characteristics are fully described.
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Affiliation(s)
- G.J.M. Verkley
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - K. Dukik
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - R. Renfurm
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M. Göker
- DSMZ – Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstrasse 7B, 38124 Braunschweig, Germany
| | - J.B. Stielow
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae. Persoonia - Molecular Phylogeny and Evolution of Fungi 2014; 33:1-40. [PMID: 25737591 PMCID: PMC4312929 DOI: 10.3767/003158514x681981] [Citation(s) in RCA: 181] [Impact Index Per Article: 18.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2014] [Accepted: 03/12/2014] [Indexed: 11/25/2022]
Abstract
The Teratosphaeriaceae represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and RPB2 genes strongly support a separation of the Mycosphaerellaceae from the Teratosphaeriaceae, and also provide support for the Extremaceae and Neodevriesiaceae, two novel families including many extremophilic fungi that occur on a diversity of substrates. In addition, a multi-locus DNA sequence dataset was generated (ITS, LSU, Btub, Act, RPB2, EF-1α and Cal) to distinguish taxa in Mycosphaerella and Teratosphaeria associated with leaf disease of Eucalyptus, leading to the introduction of 23 novel genera, five species and 48 new combinations. Species are distinguished based on a polyphasic approach, combining morphological, ecological and phylogenetic species concepts, named here as the Consolidated Species Concept (CSC). From the DNA sequence data generated, we show that each one of the five coding genes tested, reliably identify most of the species present in this dataset (except species of Pseudocercospora). The ITS gene serves as a primary barcode locus as it is easily generated and has the most extensive dataset available, while either Btub, EF-1α or RPB2 provide a useful secondary barcode locus.
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Wang X, Zang R, Yin Z, Kang Z, Huang L. Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data. Ecol Evol 2014; 4:1369-80. [PMID: 24834333 PMCID: PMC4020696 DOI: 10.1002/ece3.1030] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Revised: 02/13/2014] [Accepted: 02/18/2014] [Indexed: 11/06/2022] Open
Abstract
Fungal diseases are posing tremendous threats to global economy and food safety. Among them, Valsa canker, caused by fungi of Valsa and their Cytospora anamorphs, has been a serious threat to fruit and forest trees and is one of the most destructive diseases of apple in East Asia, particularly. Accurate and robust delimitation of pathogen species is not only essential for the development of effective disease control programs, but also will advance our understanding of the emergence of plant diseases. However, species delimitation is especially difficult in Valsa because of the high variability of morphological traits and in many cases the lack of the teleomorph. In this study, we delimitated species boundary for pathogens causing apple Valsa canker with a multifaceted approach. Based on three independent loci, the internal transcribed spacer (ITS), β-tubulin (Btu), and translation elongation factor-1 alpha (EF1α), we inferred gene trees with both maximum likelihood and Bayesian methods, estimated species tree with Bayesian multispecies coalescent approaches, and validated species tree with Bayesian species delimitation. Through divergence time estimation and ancestral host reconstruction, we tested the possible underlying mechanisms for fungal speciation and host-range change. Our results proved that two varieties of the former morphological species V. mali represented two distinct species, V. mali and V. pyri, which diverged about 5 million years ago, much later than the divergence of their preferred hosts, excluding a scenario of fungi-host co-speciation. The marked different thermal preferences and contrasting pathogenicity in cross-inoculation suggest ecological divergences between the two species. Apple was the most likely ancestral host for both V. mali and V. pyri. Host-range expansion led to the occurrence of V. pyri on both pear and apple. Our results also represent an example in which ITS data might underestimate species diversity.
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Affiliation(s)
- Xuli Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F UniversityYangling, 712100, China
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural SciencesBeijing, 100193, China
| | - Rui Zang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F UniversityYangling, 712100, China
| | - Zhiyuan Yin
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F UniversityYangling, 712100, China
| | - Zhensheng Kang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F UniversityYangling, 712100, China
| | - Lili Huang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F UniversityYangling, 712100, China
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Parreira DF, da Silva M, Pereira OL, Soares DJ, Barreto RW. Cercosporoid hyphomycetes associated with Tibouchina herbacea (Melastomataceae) in Brazil. Mycol Prog 2014. [DOI: 10.1007/s11557-013-0952-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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64
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Crous P, Wingfield M, Guarro J, Cheewangkoon R, van der Bank M, Swart W, Stchigel A, Cano-Lira J, Roux J, Madrid H, Damm U, Wood A, Shuttleworth L, Hodges C, Munster M, de Jesús Yáñez-Morales M, Zúñiga-Estrada L, Cruywagen E, de Hoog G, Silvera C, Najafzadeh J, Davison E, Davison P, Barrett M, Barrett R, Manamgoda D, Minnis A, Kleczewski N, Flory S, Castlebury L, Clay K, Hyde K, Maússe-Sitoe S, Chen S, Lechat C, Hairaud M, Lesage-Meessen L, Pawłowska J, Wilk M, Śliwińska-Wyrzychowska A, Mętrak M, Wrzosek M, Pavlic-Zupanc D, Maleme H, Slippers B, Mac Cormack W, Archuby D, Grünwald N, Tellería M, Dueñas M, Martín M, Marincowitz S, de Beer Z, Perez C, Gené J, Marin-Felix Y, Groenewald J. Fungal Planet description sheets: 154-213. PERSOONIA 2013; 31:188-296. [PMID: 24761043 PMCID: PMC3904050 DOI: 10.3767/003158513x675925] [Citation(s) in RCA: 144] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2013] [Accepted: 10/01/2013] [Indexed: 11/25/2022]
Abstract
Novel species of microfungi described in the present study include the following from South Africa: Camarosporium aloes, Phaeococcomyces aloes and Phoma aloes from Aloe, C. psoraleae, Diaporthe psoraleae and D. psoraleae-pinnatae from Psoralea, Colletotrichum euphorbiae from Euphorbia, Coniothyrium prosopidis and Peyronellaea prosopidis from Prosopis, Diaporthe cassines from Cassine, D. diospyricola from Diospyros, Diaporthe maytenicola from Maytenus, Harknessia proteae from Protea, Neofusicoccum ursorum and N. cryptoaustrale from Eucalyptus, Ochrocladosporium adansoniae from Adansonia, Pilidium pseudoconcavum from Greyia radlkoferi, Stagonospora pseudopaludosa from Phragmites and Toxicocladosporium ficiniae from Ficinia. Several species were also described from Thailand, namely: Chaetopsina pini and C. pinicola from Pinus spp., Myrmecridium thailandicum from reed litter, Passalora pseudotithoniae from Tithonia, Pallidocercospora ventilago from Ventilago, Pyricularia bothriochloae from Bothriochloa and Sphaerulina rhododendricola from Rhododendron. Novelties from Spain include Cladophialophora multiseptata, Knufia tsunedae and Pleuroascus rectipilus from soil and Cyphellophora catalaunica from river sediments. Species from the USA include Bipolaris drechsleri from Microstegium, Calonectria blephiliae from Blephilia, Kellermania macrospora (epitype) and K. pseudoyuccigena from Yucca. Three new species are described from Mexico, namely Neophaeosphaeria agaves and K. agaves from Agave and Phytophthora ipomoeae from Ipomoea. Other African species include Calonectria mossambicensis from Eucalyptus (Mozambique), Harzia cameroonensis from an unknown creeper (Cameroon), Mastigosporella anisophylleae from Anisophyllea (Zambia) and Teratosphaeria terminaliae from Terminalia (Zimbabwe). Species from Europe include Auxarthron longisporum from forest soil (Portugal), Discosia pseudoartocreas from Tilia (Austria), Paraconiothyrium polonense and P. lycopodinum from Lycopodium (Poland) and Stachybotrys oleronensis from Iris (France). Two species of Chrysosporium are described from Antarctica, namely C. magnasporum and C. oceanitesii. Finally, Licea xanthospora is described from Australia, Hypochnicium huinayensis from Chile and Custingophora blanchettei from Uruguay. Novel genera of Ascomycetes include Neomycosphaerella from Pseudopentameris macrantha (South Africa), and Paramycosphaerella from Brachystegia sp. (Zimbabwe). Novel hyphomycete genera include Pseudocatenomycopsis from Rothmannia (Zambia), Neopseudocercospora from Terminalia (Zambia) and Neodeightoniella from Phragmites (South Africa), while Dimorphiopsis from Brachystegia (Zambia) represents a novel coelomycetous genus. Furthermore, Alanphillipsia is introduced as a new genus in the Botryosphaeriaceae with four species, A. aloes, A. aloeigena and A. aloetica from Aloe spp. and A. euphorbiae from Euphorbia sp. (South Africa). A new combination is also proposed for Brachysporium torulosum (Deightoniella black tip of banana) as Corynespora torulosa. Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa.
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Affiliation(s)
- P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - J. Guarro
- Mycology Unit, University Rovira i Virgili and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - R. Cheewangkoon
- Department of Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - M. van der Bank
- Department of Botany and Plant Biotechnology, University of Johannesburg, P.O. Box 524, Auckland Park, 2006, South Africa
| | - W.J. Swart
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - A.M. Stchigel
- Mycology Unit, University Rovira i Virgili and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - J.F. Cano-Lira
- Mycology Unit, University Rovira i Virgili and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - J. Roux
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - H. Madrid
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - U. Damm
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - A.R. Wood
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - L.A. Shuttleworth
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - C.S. Hodges
- Plant Disease and Insect Clinic, North Carolina State University, Campus Box 7211, Raleigh, North Carolina 27695, 919-515-3619, USA
| | - M. Munster
- Plant Disease and Insect Clinic, North Carolina State University, Campus Box 7211, Raleigh, North Carolina 27695, 919-515-3619, USA
| | - M. de Jesús Yáñez-Morales
- Colegio de Postgraduados, Campus Montecillo, Km. 36.5 Carr. Mexico-Texcoco, Montecillo, Mpio. de Texcoco, Edo. de Mexico 56230, Mexico
| | - L. Zúñiga-Estrada
- Campo Experimental Las Huastecas-INIFAP, Km 55 Carretera Tampico-Mante, C.P. 89610, Mexico
| | - E.M. Cruywagen
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - G.S. de Hoog
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - C. Silvera
- Mycology Unit, University Rovira i Virgili and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - J. Najafzadeh
- Department of Parasitology and Mycology, and Cancer Molecular Pathology Research Center, Ghaem Hospital, School of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - E.M. Davison
- Department of Environment and Agriculture, Curtin University, GPO Box U1987, Perth 6845, Western Australia; Western Australian Herbarium, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983
| | | | - M.D. Barrett
- Botanic Gardens and Parks Authority, Kings Park and Botanic Garden, West Perth, Western Australia 6005; School of Plant Biology, The University of Western Australia, Crawley, Western Australia 6009; Western Australian Herbarium, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983
| | - R.L. Barrett
- Botanic Gardens and Parks Authority, Kings Park and Botanic Garden, West Perth, Western Australia 6005; School of Plant Biology, The University of Western Australia, Crawley, Western Australia 6009; Western Australian Herbarium, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983
| | - D.S. Manamgoda
- Systematic Mycology & Microbiology Laboratory, USDA-ARS, 10300 Baltimore Ave., Beltsville, MD 20705, USA
- Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - A.M. Minnis
- Center for Forest Mycology Research, Northern Research Station, USDA-Forest Service, One Gifford Pinchot Dr., Madison, WI 53726, USA
| | - N.M. Kleczewski
- Department of Plant and Soil Sciences, The University of Delaware,145 Townsend Hall, Newark, DE 19719, USA
| | - S.L. Flory
- Agronomy Department, University of Florida, Gainesville, FL 32611, USA
| | - L.A. Castlebury
- Systematic Mycology & Microbiology Laboratory, USDA-ARS, 10300 Baltimore Ave., Beltsville, MD 20705, USA
| | - K. Clay
- Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
| | - K.D. Hyde
- Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - S.N.D. Maússe-Sitoe
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - Shuaifei Chen
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - C. Lechat
- Ascofrance, 64 route de Chizé, 79360 Villiers en Bois, France
| | - M. Hairaud
- Impasse des Marronniers, 79360 Poivendre de Marigny, France
| | - L. Lesage-Meessen
- INRA Aix-Marseille Université, UMR-BCF, CP925, 13288 Marseille cedex 09, France
| | - J. Pawłowska
- Department of Systematics and Plant Geography, University of Warsaw, Al. Ujazdowskie 4, 00-478 Warsaw, Poland
| | - M. Wilk
- College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Warsaw, Poland
| | - A. Śliwińska-Wyrzychowska
- Department of Botany and Plant Ecology, Institute of Chemistry, Environmental Protection and Biotechnology, Jan Długosz University, Al. Armii Krajowej 13/15, 42-201 Częstochowa, Poland
| | - M. Mętrak
- Department of Plant Ecology and Environmental Protection, The University of Warsaw, Al. Ujazdowskie 4, 00-478 Warsaw, Poland
| | - M. Wrzosek
- Department of Systematics and Plant Geography, University of Warsaw, Al. Ujazdowskie 4, 00-478 Warsaw, Poland
| | - D. Pavlic-Zupanc
- Biosystematics Programme-Mycology Unit, Plant Protection Research Institute, Agricultural Research Councile (ARC-PPRI), Pretoria, South Africa
| | - H.M. Maleme
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
- Department of Microbiology and Plant Pathology, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa
| | - B. Slippers
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
- Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa
| | - W.P. Mac Cormack
- Departamento de Microbiología Ambiental y Ecofisiología, Instituto Antartico Argentino, Buenos Aires, Argentina
| | - D.I. Archuby
- Departamento de Ciencias Biológicas, Aves, Instituto Antartico Argentino, Buenos Aires, Argentina
| | - N.J. Grünwald
- USDA Agricultural Research Service, Horticultural Crops Research Laboratory, 3420 NW Orchard Ave., Corvallis OR 97330, USA
| | - M.T. Tellería
- Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - M. Dueñas
- Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - M.P. Martín
- Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - S. Marincowitz
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa
| | - Z.W. de Beer
- Department of Microbiology and Plant Pathology, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa
| | - C.A. Perez
- Fitopatología, EEMAC, Departamento de Protección Vegetal, Facultad de Agronomía, Universidad de la República, Ruta 3 km 363, Paysandú, Uruguay
| | - J. Gené
- Mycology Unit, University Rovira i Virgili and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - Y. Marin-Felix
- Mycology Unit, University Rovira i Virgili and IISPV, C/ Sant Llorenç 21, 43201 Reus, Spain
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
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Crous PW, Quaedvlieg W, Sarpkaya K, Can C, Erkılıç A. Septoria-like pathogens causing leaf and fruit spot of pistachio. IMA Fungus 2013; 4:187-99. [PMID: 24563831 PMCID: PMC3905937 DOI: 10.5598/imafungus.2013.04.02.04] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2013] [Accepted: 10/15/2013] [Indexed: 11/10/2022] Open
Abstract
Several species of Septoria are associated with leaf and fruit spot of pistachio (Pistacia vera), though their identity has always been confused, making identification problematic. The present study elucidates the taxonomy of the Septoria spp. associated with pistachio, and distinguishes four species associated with this host genus. Partial nucleotide sequence data for five gene loci, ITS, LSU, EF-1α, RPB2 and Btub were generated for a subset of isolates. Cylindroseptoria pistaciae, which is associated with leaf spots of Pistacia lentiscus in Spain, is characterised by pycnidial conidiomata that give rise to cylindrical, aseptate conidia. Two species of Septoria s. str. are also recognised on pistachio, S. pistaciarum, and S. pistaciae. The latter is part of the S. protearum species complex, and appears to be a wide host range pathogen occurring on hosts in several different plant families. Septoria pistacina, a major pathogen of pistachio in Turkey, is shown to belong to Pseudocercospora, and not Septoria as earlier suspected. Other than for its pycnidial conidiomata, it is a typical species of Pseudocercospora based on its smooth, pigmented conidiogenous cells and septate conidia. This phenomenon has also been observed in Pallidocercospora, and seriously questions the value of conidiomatal structure at generic level, which has traditionally been used to separate hyphomycetous from coelomycetous ascomycetes. Other than DNA barcodes to facilitate the molecular identification of these taxa occurring on pistachio, a key is also provided to distinguish species based on morphology.
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Affiliation(s)
- Pedro W. Crous
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - William Quaedvlieg
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | - Kamil Sarpkaya
- Pistachio Research Station, Üniversite Bulvari 27060 Şahinbey/Gaziantep, Turkey
| | - Canan Can
- Gaziantep University, Faculty of Art and Science, Department of Biology, Gaziantep, Turkey
| | - Ali Erkılıç
- Cukurova University, Faculty of Agriculture, Department of Plant Protection, Adana, Turkey
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66
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Quaedvlieg W, Verkley G, Shin HD, Barreto R, Alfenas A, Swart W, Groenewald J, Crous P. Sizing up Septoria. Stud Mycol 2013; 75:307-90. [PMID: 24014902 PMCID: PMC3713890 DOI: 10.3114/sim0017] [Citation(s) in RCA: 176] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
Septoria represents a genus of plant pathogenic fungi with a wide geographic distribution, commonly associated with leaf spots and stem cankers of a broad range of plant hosts. A major aim of this study was to resolve the phylogenetic generic limits of Septoria, Stagonospora, and other related genera such as Sphaerulina, Phaeosphaeria and Phaeoseptoria using sequences of the the partial 28S nuclear ribosomal RNA and RPB2 genes of a large set of isolates. Based on these results Septoria is shown to be a distinct genus in the Mycosphaerellaceae, which has mycosphaerella-like sexual morphs. Several septoria-like species are now accommodated in Sphaerulina, a genus previously linked to this complex. Phaeosphaeria (based on P. oryzae) is shown to be congeneric with Phaeoseptoria (based on P. papayae), which is reduced to synonymy under the former. Depazea nodorum (causal agent of nodorum blotch of cereals) and Septoria avenae (causal agent of avenae blotch of barley and rye) are placed in a new genus, Parastagonospora, which is shown to be distinct from Stagonospora (based on S. paludosa) and Phaeosphaeria. Partial nucleotide sequence data for five gene loci, ITS, LSU, EF-1α, RPB2 and Btub were generated for all of these isolates. A total of 47 clades or genera were resolved, leading to the introduction of 14 new genera, 36 new species, and 19 new combinations. TAXONOMIC NOVELTIES New genera - Acicuseptoria Quaedvlieg, Verkley & Crous, Cylindroseptoria Quaedvlieg, Verkley & Crous, Kirstenboschia Quaedvlieg, Verkley & Crous, Neoseptoria Quaedvlieg, Verkley & Crous, Neostagonospora Quaedvlieg, Verkley & Crous, Parastagonospora Quaedvlieg, Verkley & Crous, Polyphialoseptoria Quaedvlieg, R.W. Barreto, Verkley & Crous, Ruptoseptoria Quaedvlieg, Verkley & Crous, Septorioides Quaedvlieg, Verkley & Crous, Setoseptoria Quaedvlieg, Verkley & Crous, Stromatoseptoria Quaedvlieg, Verkley & Crous, Vrystaatia Quaedvlieg, W.J. Swart, Verkley & Crous, Xenobotryosphaeria Quaedvlieg, Verkley & Crous, Xenoseptoria Quaedvlieg, H.D. Shin, Verkley & Crous. New species - Acicuseptoria rumicis Quaedvlieg, Verkley & Crous, Caryophylloseptoria pseudolychnidis Quaedvlieg, H.D. Shin, Verkley & Crous, Coniothyrium sidae Quaedvlieg, Verkley, R.W. Barreto & Crous, Corynespora leucadendri Quaedvlieg, Verkley & Crous, Cylindroseptoria ceratoniae Quaedvlieg, Verkley & Crous, Cylindroseptoria pistaciae Quaedvlieg, Verkley & Crous, Kirstenboschia diospyri Quaedvlieg, Verkley & Crous, Neoseptoria caricis Quaedvlieg, Verkley & Crous, Neostagonospora caricis Quaedvlieg, Verkley & Crous, Neostagonospora elegiae Quaedvlieg, Verkley & Crous, Paraphoma dioscoreae Quaedvlieg, H.D. Shin, Verkley & Crous, Parastagonospora caricis Quaedvlieg, Verkley & Crous, Parastagonospora poae Quaedvlieg, Verkley & Crous, Phlyctema vincetoxici Quaedvlieg, Verkley & Crous, Polyphialoseptoria tabebuiae-serratifoliae Quaedvlieg, Alfenas & Crous, Polyphialoseptoria terminaliae Quaedvlieg, R.W. Barreto, Verkley & Crous, Pseudoseptoria collariana Quaedvlieg, Verkley & Crous, Pseudoseptoria obscura Quaedvlieg, Verkley & Crous, Sclerostagonospora phragmiticola Quaedvlieg, Verkley & Crous, Septoria cretae Quaedvlieg, Verkley & Crous, Septoria glycinicola Quaedvlieg, H.D. Shin, Verkley & Crous, Septoria oenanthicola Quaedvlieg, H.D. Shin, Verkley & Crous, Septoria pseudonapelli Quaedvlieg, H.D. Shin, Verkley & Crous, Setophoma chromolaenae Quaedvlieg, Verkley, R.W. Barreto & Crous, Setoseptoria phragmitis Quaedvlieg, Verkley & Crous, Sphaerulina amelanchier Quaedvlieg, Verkley & Crous, Sphaerulina pseudovirgaureae Quaedvlieg, Verkley & Crous, Sphaerulina viciae Quaedvlieg, H.D. Shin, Verkley & Crous, Stagonospora duoseptata Quaedvlieg, Verkley & Crous, Stagonospora perfecta Quaedvlieg, Verkley & Crous, Stagonospora pseudocaricis Quaedvlieg, Verkley, Gardiennet & Crous, Stagonospora pseudovitensis Quaedvlieg, Verkley & Crous, Stagonospora uniseptata Quaedvlieg, Verkley & Crous, Vrystaatia aloeicola Quaedvlieg, Verkley, W.J. Swart & Crous, Xenobotryosphaeria calamagrostidis Quaedvlieg, Verkley & Crous, Xenoseptoria neosaccardoi Quaedvlieg, H.D. Shin, Verkley & Crous. New combinations - Parastagonospora avenae (A.B. Frank) Quaedvlieg, Verkley & Crous, Parastagonospora nodorum (Berk.) Quaedvlieg, Verkley & Crous, Phaeosphaeria papayae (Speg.) Quaedvlieg, Verkley & Crous, Pseudocercospora domingensis (Petr. & Cif.) Quaedvlieg, Verkley & Crous, Ruptoseptoria unedonis (Roberge ex Desm.) Quaedvlieg, Verkley & Crous, Septorioides pini-thunbergii (S. Kaneko) Quaedvlieg, Verkley & Crous, Sphaerulina abeliceae (Hiray.) Quaedvlieg, Verkley & Crous, Sphaerulina azaleae (Voglino) Quaedvlieg, Verkley & Crous, Sphaerulina berberidis (Niessl) Quaedvlieg, Verkley & Crous, Sphaerulina betulae (Pass.) Quaedvlieg, Verkley & Crous, Sphaerulina cercidis (Fr.) Quaedvlieg, Verkley & Crous, Sphaerulina menispermi (Thüm.) Quaedvlieg, Verkley & Crous, Sphaerulina musiva (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina oxyacanthae (Kunze & J.C. Schmidt) Quaedvlieg, Verkley & Crous, Sphaerulina patriniae (Miura) Quaedvlieg, Verkley & Crous, Sphaerulina populicola (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina quercicola (Desm.) Quaedvlieg, Verkley & Crous, Sphaerulina rhabdoclinis (Butin) Quaedvlieg, Verkley & Crous, Stromatoseptoria castaneicola (Desm.) Quaedvlieg, Verkley & Crous. Typifications: Epitypifications - Phaeosphaeria oryzae I. Miyake, Phaeoseptoria papayae Speg.; Neotypification - Hendersonia paludosa Sacc. & Speg.
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Affiliation(s)
- W. Quaedvlieg
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands
| | - G.J.M. Verkley
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - H.-D. Shin
- Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht, The Netherlands; Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Korea
| | - R.W. Barreto
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36750 Viçosa, Minas Gerais, Brazil
| | - A.C. Alfenas
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36750 Viçosa, Minas Gerais, Brazil
| | - W.J. Swart
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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