Nanoscale borromean rings

Self-assembly, stability quantification, controlled molecular switching, and sensing properties of an anthracene-containing dynamic [2]rotaxane

The preparation of a novel anthracene-containing dynamic [2]rotaxane by a templating self-assembly process between a diamine and a dialdehyde to form a [24]crown-8 macrocyclic diimine, in the presence of a dumbbell containing a secondary dialkylammonium ion center as the template, which has been exploited for its sensing properties. By appealing to the ability of the anthracene ring system--one of the two stoppers associated with the dumbbell--to act as a fluorescent probe, the fluorescence and fluorescence-quenching nature of the dynamic rotaxane in an equilibrium mixture has been investigated and quantified in the presence of external stimuli such as water, acids, salts, and an amine. The stability, as expressed by the hydrolysis of the dynamic rotaxane has been monitored by following: (i) the anthracene fluorescence and (ii) the movements of the signals in the (1)H NMR spectra. The rate of hydrolysis (t(1/2) = 6.9 min) of the dynamic rotaxane in the presence of a small amount (1 equiv.) of acid was found to be very much faster than when the hydrolysis was carried out with a large amount (>100 equiv.) of water, when t(1/2) > 140 min. Furthermore, it has been established that the anthracene fluorescence of the dynamic rotaxane rises with an increasing amount of acid. Two acid sensors have been identified with different operating modes-namely, logarithmic and linear. The combination of different inputs involving water, acids, salts and an amine leads to different fluorescence outputs from the dynamic rotaxane, hence, producing a prototype for expressing molecular logic.

A multicomponent CuAAC "click" approach to a library of hybrid polydentate 2-pyridyl-1,2,3-triazole ligands: new building blocks for the generation of metallosupramolecular architectures

A one pot, multicomponent CuAAC reaction has been exploited for the safe generation of alkyl, benzyl or aryl linked polydentate pyridyl-1,2,3-triazole ligands from their corresponding halides, sodium azide and alkynes in excellent yields. The ligands have been fully characterised by elemental analysis, HR-ESMS, IR, (1)H and (13)C NMR and in two cases the structures were confirmed by X-ray crystallography. Additionally, we have examined the Ag(I) coordination chemistry of these ligands and found, using HR-ESMS, (1)H NMR, and X-ray crystallography, that both discrete and polymeric metallosupramolecular architectures can be formed.

Reversible switching between hydrophilic and hydrophobic superparamagnetic iron oxide microspheres via one-step supramolecular dynamic dendronization: exploration of dynamic wettability

We describe the use of hydrophobic poly(aryl ether) dendrons to peripherally functionalize hydrophilic amine-containing superparamagnetic iron oxide microspheres (SPIO-NH2) in one step via imine formation. The reversible formation of imine bonds in the absence/presence of water renders dynamic control of the hydrophilicity and hydrophobicity of the microspheres (SPIO-Gn). The dynamic nature of the imine-containing dendronized microspheres (SPIO-Gn) can be "fixed" by locking the reversible 2,6-diiminopyridyl moieties with metal cations (Zn2+, Co2+, and Ni2+) to afford kinetically stable dendronized microspheres (SPIO-Gn-M). Isolation of these microspheres is facilitated by convenient magnetic separation by an externally applied magnetic field. Characterization of these novel organic-inorganic hybrid microspheres has been performed by various techniques using UV/visible absorption and Fourier transform infrared spectroscopies, transmission electron microscopy, thermogravimetric analysis, and a vibrating sample magnetometer. We have demonstrated the stability and reversible switching of hydrophilicity/hydrophobicity by contact-angle measurements. In particular, the hydrophilic SPIO-NH2 microspheres demonstrated a contact angle of 42 +/- 2 degrees when a drop of water was added to a SPIO-NH2-coated mica surface. On the other hand, the hydrophobic SPIO-Gn-M dendronized microspheres demonstrated a contact angle of 85 +/- 2 degrees , an observation that involves an increase of the contact angle of over 40 degrees . Furthermore, when a drop of water was placed on a dynamic SPIO-Gn-coated mica surface, the contact angle of the water droplet decreased in time. Comparatively, the rate of decrease of the contact angle is H2O > 1% Co(OAc)2/H2O > N,N'-dimethylformamide/H2O (1:1).

Getting harder: cobalt(III)-template synthesis of catenanes and rotaxanes

The synthesis of catenanes and rotaxanes using the hard trivalent transition metal ion cobalt(III) as a template is reported. Tridentate dianionic pyridine-2,6-dicarboxamido ligands, each with two terminal alkene groups, coordinate Co(III) in a mutually orthogonal arrangement such that entwined or interlocked molecular architectures are produced by ring-closing olefin metathesis. Double macrocyclization of two such ligands bound to Co(III) afford a non-interlocked "figure-of-eight" complex in 42% yield, the structure determined by X-ray crystallography. Preforming one macrocycle and carrying out a single macrocyclization of the second bis-olefin with both ligands attached to the Co(III) template led to the isomeric [2]catenate in 69% yield. The mechanically interlocked structure was confirmed by X-ray crystallography of both the Co(III) catenate and the metal-free catenand. A Co(III)-template [2]rotaxane was assembled in 61% yield by macrocyclization of the bis-olefin ligand about an appropriate dianionic thread. For both catenanes and rotaxanes, removal of the metal ion via reduction under acidic conditions to the more labile Co(II) gave neutral interlocked molecules with well-defined co-conformations stabilized by intercomponent hydrogen bonding.

The chemistry of the mechanical bond

The use of templation in the synthesis of unnatural products where two or more components are mechanically interlocked has not only raised the efficiency of their production to near quantitative levels in some instances, but the molecular recognition that aids and abets the templation is also part and parcel of the molecules after they have been prepared, purified and presented for investigation. The fact that the molecular recognition 'lives on' in mechanically interlocked molecules, following their templated formation, makes them prime candidates for applications that straddle the scientific and technical worlds from devices that could spawn new information technologies to integrated systems that could have fundamental applications in the health-care industries. The challenge to make more and more sophisticated compounds is predicated upon our fundamental understanding of the nature of the mechanical bond and how this associated knowledge base can be employed to do complex systems chemistry in very different environments where emergent phenomena become the order of the day (critical review, 104 references).

Active metal template synthesis of rotaxanes, catenanes and molecular shuttles

Active metal template synthesis is a powerful new strategy for the construction of rotaxanes, catenanes and other mechanically interlocked molecular structures. The key feature is that the metal plays a dual role during the assembly of the interlocked architecture, acting as both a template for entwining or threading the components and as a catalyst for capturing the interlocked final product by covalent bond formation. Unlike traditional "passive" metal template methods to rotaxanes and catenanes, permanent recognition motifs are not required on each of the components to be interlocked (i.e., the assembly can be traceless) and the template can often be used in sub-stoichiometric quantities. Since its inception in 2006, a rapidly growing number of different metal-catalysed reactions have proven suitable for the active metal template synthesis of both rotaxanes and catenanes, including the copper(i)-catalysed terminal alkyne-azide cycloaddition (the CuAAC "click" reaction), palladium- and copper-catalysed alkyne homocouplings and heterocouplings, and palladium-catalysed oxidative Heck couplings and Michael additions. In addition to simple rotaxanes and catenanes, the synthetic strategy has been used to construct switchable molecular shuttles with weak intercomponent interactions (a requirement for fast shuttling) and to provide insight into the mechanisms of transition metal-catalysed reactions. In this tutorial review we highlight the utility and potential of the early examples of the active metal template strategy in mechanically interlocked molecule synthesis.

Coordination-driven self-assembly of functionalized supramolecular metallacycles

Coordination-driven self-assembly that combines rigid ditopic Pt(II) metal acceptors and bis-pyridyl organic donors provides a facile means of synthesizing well-defined metallacycles of predetermined size and geometry. Functionalization of the component acceptor or donor building blocks allows for the preparation of multifunctional supramolecular materials wherein the stoichiometry and position of individual functional moieties can be precisely controlled. The design, self-assembly, and applications of polyfunctional supramolecules incorporating functional moieties with host-guest, photonic, materials, and self-organizational properties is discussed.

Template-directed synthesis employing reversible imine bond formation

The imine bond--formed by the reversible condensation of an amine and an aldehyde--and its applications as a dynamic covalent bond in the template-directed synthesis of molecular compounds, will be the focus of this tutorial review. Template-directed synthesis--or expressed another way, supramolecular assistance to covalent synthesis--relies on the use of reversible noncovalent bonding interactions between molecular building blocks in order to preorganise them into a certain relative geometry as a prelude to covalent bond formation to afford the thermodynamically preferred product. The use of this so-called dynamic covalent chemistry (DCC) in templated reactions allows for an additional amount of reversibility, further eliminating potential kinetic products by allowing the covalent bonds that are formed during the template-directed reaction to be 'proofread for errors', thus making it possible for the reaction to search out its thermodynamic minimum. The marriage of template-directed synthesis with DCC has allowed chemists to construct an increasingly complex collection of compounds from relatively simple precursors. This new paradigm in organic synthesis requires that each individual piece in the molecular self-assembly process is preprogrammed so that the multiple recognition events expressed between the pieces are optimised in a highly cooperative manner in the desired product. It offers an extremely simple way of making complex mechanically interlocked compounds--e.g., catenanes, rotaxanes, suitanes, Borromean rings and Solomon knots--from relatively simple precursors.

Template-directed synthesis of donor/acceptor [2]catenanes and [2]rotaxanes

The synthesis of mechanically interlocked molecular compounds has advanced by leaps and bounds since the early days of statistical methods and covalent-directing strategies. Template-directed synthesis has emerged as the method of choice for the construction of increasingly complex and functional [2]catenanes and [2]rotaxanes. In particular, mechanically interlocked molecules employing π-donating and π-accepting recognition units have been produced with remarkable efficiencies and show great promise in technologies as diverse as molecular electronics and drug delivery.

Three-Component Entanglements Consisting of Three Crescent-Shaped Bidentate Ligands Coordinated to an Octahedral Metal Centre

3,3'-biisoquinoline ligands (biiq) L, bearing aromatic substituents on their 8 and 8' positions, have been used to generate interwoven systems consisting of three crescent-shaped ligands disposed around an octahedral metal centre. Mono-ligand complexes of the type [ReL(CO)3py]+ (py: pyridine) have also been prepared, leading to sterically non-hindering complexes in spite of the endotopic nature of the chelate used. The three-component entanglements have been prepared by using either FeII or RuII as gathering metal centre. The synthetic procedure is simple and efficient, affording fully characterised complexes as their PF6 or SbCl6 salts. X-ray crystallography clearly shows that the crescent-shaped ligands do not repel each other in the tris-chelate complexes. In an analogous way, the ReI complexes show open structures with no steric repulsion between the L ligand and the ancillary CO or py groups. The FeL3 or RuL3 compounds are very unusual in the sense that, contrary to all the other tris-bidentate chelate complexes made till now, the three organic components are tangled up, in a situation which will be very favourable to the formation of new non trivial topologies of the catenane type.

Equilibrating Dynamic [2]Rotaxanes

Upon mixing and dehydration, 2,6-diformylpyridine and 2,2'-oxybis(ethylamine) form a dynamic combinatorial library of at least nine members. Through hydrogen bonding and other intermolecular interactions, templating dumbbell molecules select one macrocyclic member of the library, at the expense of all the others, to create [2]rotaxanes. These rotaxanes, however, retain the dynamic character of the library, since a diformylpyridine analogue can exchange with the macrocyclic component in solution. In addition, crystallization of the mixture surprisingly furnishes only the [24]crown-8-like macrocycle on its own--evidence of a kinetic selection process occurring between phase transitions.

Hexafunctionalized Borromeates Using Olefin Cross Metathesis

Employing well-established template-directed protocols, which depend upon dynamic covalent, coordinative, and noncovalent chemistry for their efficient outputs, we have synthesized, in a convergent manner, Borromeates composed of three identical macrocycles which present, diagonally in pairs, six exo-bidentate bipyridyl ligands and six endo-diiminopyridyl ligands, each carrying either pentenyloxy or p-tolylpentenyloxy substituents on their 4-positions, to six zinc(II) ions.

Modular Synthesis and Dynamics of a Variety of Donor–Acceptor Interlocked Compounds Prepared by Click Chemistry

A series of donor-acceptor [2]-, [3]-, and [4]rotaxanes and self-complexes ([1]rotaxanes) have been synthesized by a threading-followed-by-stoppering approach, in which the precursor pseudorotaxanes are fixed by using Cu(I)-catalyzed Huisgen 1,3-dipolar cycloaddition to attach the required stoppers. This alternative approach to forming rotaxanes of the donor-acceptor type, in which the donor is a 1,5-dioxynaphthalene unit and the acceptor is the tetracationic cyclophane cyclobis(paraquat-p-phenylene), proceeds with enhanced yields relative to the tried and tested synthetic strategies, which involve the clipping of the cyclophane around a preformed dumbbell containing pi-electron-donating recognition sites. The new synthetic approach is amenable to application to highly convergent sequences. To extend the scope of this reaction, we constructed [2]rotaxanes in which one of the phenylene rings of the tetracationic cyclophane is perfluorinated, a feature which significantly weakens its association with pi-electron-rich guests. The activation barrier for the shuttling of the cyclophane over a spacer containing two triazole rings was determined to be (15.5+/-0.1) kcal mol(-1) for a degenerate two-station [2]rotaxane, a value similar to that previously measured for analogous degenerate compounds containing aromatic or ethylene glycol spacers. The triazole rings do not seem to perturb the shuttling process significantly; this property bodes well for their future incorporation into bistable molecular switches.

Transformation from a low-dimensional framework to a high-dimensional architecture based on different metal ions: syntheses, structures, and photoluminescences

Five novel metal pamidronates (3-ammonium-1-hydroxypropylidene-1,1-bisphosphonate, APD) formulated as Ni2(C3NH10P2O7)4.4H2O (1), M(C3NH9P2O7).H2O (M = Co (2), Mn (3), Zn (4)) and Cu3(C3NH8P2O7)2.2H2O (5) have been hydrothermally synthesized under similar conditions. Compound 1 is a molecular binuclear nickel cluster. Compounds 2 and 3 exhibit similar one-dimensional ladderlike structures. Compound 4 possesses a novel two-dimensional gridlike framework. Compound 5 shows an unusual three-dimensional architecture, in which two-dimensional layers with a parquet motif are pillared by {CuO4} planar squares. Different dinuclear secondary building units (SBUs) are observed in compounds 1-5, depending on the different coordination modes of APD. They also exhibit different photoluminescence properties.

Dynamic [2]Catenanes Based on a Hydrogen Bonding-Mediated Bis-Zinc Porphyrin Foldamer Tweezer: A Case Study

This paper describes the self-assembly of a new class of three-component dynamic [2]catenanes, which are driven or stabilized by intramolecular hydrogen bonding, coordination, and electrostatic interaction. One of the component molecules 2, consisting of an aromatic oligoamide spacer and two peripheral zinc porphyrin units, was designed to adopt a folded preorganized conformation, which is stabilized by consecutive intramolecular three-centered hydrogen bonds. Component molecule 3 is a linear secondary ammonium bearing two peripheral pyridine units, which was designed to form a 1:1 complex with 24-crown-8 (5). The 1H NMR and UV-vis experiments in CDCl3-CD3CN (4:1 v/v) revealed that, due to the preorganized U-shaped feature, 2 could efficiently bind 3 through the cooperative zinc-pyridine coordination to generate highly stable 1:1 complex 2.3. Adding 5 to the 1:1 solution of 2 and 3 led to the formation of dynamic three-component [2]catenane 2.3.5 as a result of the threading of 3 through 5. 1H NMR studies indicated that in the 1:1:1 solution (3 mM) [2]catenane 2.3.5 was generated in 55% yield at 25 degrees C. The yield was increased with the reduction of the temperature and [2]catenane could be produced quantitatively in a 1:1:2 solution ([2]=3 mM) at -13 degrees C. Replacing 3 with 1,2-bis(4,4'-bipyridinium)ethane (4) in the three-component solution could also give rise to similar dynamic [2]catenane 2.4.5 albeit in slightly lower yield.

Synthetic molecular motors and mechanical machines

The widespread use of controlled molecular-level motion in key natural processes suggests that great rewards could come from bridging the gap between the present generation of synthetic molecular systems, which by and large rely upon electronic and chemical effects to carry out their functions, and the machines of the macroscopic world, which utilize the synchronized movements of smaller parts to perform specific tasks. This is a scientific area of great contemporary interest and extraordinary recent growth, yet the notion of molecular-level machines dates back to a time when the ideas surrounding the statistical nature of matter and the laws of thermodynamics were first being formulated. Here we outline the exciting successes in taming molecular-level movement thus far, the underlying principles that all experimental designs must follow, and the early progress made towards utilizing synthetic molecular structures to perform tasks using mechanical motion. We also highlight some of the issues and challenges that still need to be overcome.