An NMR technique for tracing out the carbon skeleton of an organic molecule

Substituent effects on scalar J(13C, 13C) couplings in pyrimidines. An experimental and DFT study

One- two- and three 13C, 13C (n = 1, 2, 3) scalar couplings, (n)J(C,C) in a set of pyrimidine derivatives were studied both experimentally at natural abundance and theoretically by their DFT calculation of all four contributions. Trends of non-contact terms are discussed and substituent effects are rationalized, comparing some of them with the corresponding values in benzene and pyridine. Although substituent effects on non-contact terms are relatively important, the whole trend is dominated by the Fermi contact term. According to the current literature, substituent effects on 1J(C,C) couplings in benzene derivatives are dominated by the inductive effect, which, apparently, is also the case in nitrogen heteroaromatic compounds. However, some differences observed in this work for substituent effects on 1J(C,C) couplings in pyrimidine derivatives suggest that in the latter type of compounds substituent effects can be affected by the orientation of the ring nitrogen lone pairs.

Synthesis and complete NMR spectral assignment of thiophene-substituted sulfinyl monomers

This paper describes the synthesis of thiophene-substituted sulfinyl monomers. It comprises a four-step reaction by which the thiophene unit is built in via Suzuki coupling. These monomers could be used as building blocks for the preparation of conducting polymers via a new concept: the sulfinyl precursor route i.e. via thiophene substituted poly(p-phenylenevinylene) precursors. Furthermore, the complete 1H and 13C NMR signal assignment is presented. In addition to being essential for the characterization of the polymers concerned, it offers useful input information for further improvement of chemical shift prediction software. Furthermore, the T1C relaxation decay times are demonstrated to have the potential of being a fast and robust criterion for the spectral assignment of analogous monomers.

The DQ-HN[CACB] and DQ-HN(CO)[CACB] sequences with evolution of double quantum Calpha-Cbeta coherences

The new variant of known HNCACB and HN(CO)CACB techniques is proposed that employs excitation and evolution of double quantum Calpha-Cbeta coherences. The most important features of the new method are: increased signal dispersion, lack of splittings due to 1J(Calpha-Cbeta) spin-spin couplings, and absence of accidental cancellations of positive and negative signals. The acquisition of both DQ-HN[CACB] and DQ-HN(CO)[CACB] techniques enables sequential assignment of protein backbone, using only Calpha-Cbeta DQ-frequencies. The determination of all Calpha and Cbeta chemical shifts requires, however, a comparison with HN(CO)CA or HNCA spectra. Examples of applications of the DQ-HN[CACB] and DQ-HN(CO)[CACB] experiments are presented, employing the 2D Reduced Dimensionality approach for 13C, 15N-labeled ubiquitin, and the 3D acquisition for 13C, 15N-double labeled Ca2+ -binding bovine S100A1 protein in the apo state (21 kDa) with overall correlation time of 8.1 ns.

Uniform-sign cross-peak double-quantum-filtered correlation spectroscopy

We detail the uniform-sign cross-peak double-quantum-filtered correlation spectroscopy (UC2QF COSY) experiment, a new through-bond correlation method for disordered solids. This experiment is a refocused version of the popular double-quantum-filtered correlation spectroscopy experiment in liquids. Its key feature is that it provides in-phase and doubly absorptive line shapes, which renders it robust for chemical shift correlation in solids. Both theory and experiment point to distinct advantages of this protocol, which are illustrated by several experiments under challenging conditions, including fast magic-angle spinning (30kHz), anisotropic molecular motion, and (13)C correlation spectroscopy at the natural abundance isotope level.

J-modulated ADEQUATE (JM-ADEQUATE) experiment for accurate measurement of carbon-carbon coupling constants

A new method for the accurate determination of carbon-carbon coupling constants is described. The method is based on a modified ADEQUATE experiment, where a J-modulated spin-echo sequence precedes the ADEQUATE pulse scheme. The J-modulation and scaling of carbon-carbon couplings is based on simultaneous incrementation of 13C chemical shift and coupling evolution periods. The time increment for the homonuclear carbon-carbon coupling evolution can be suitably scaled with respect to the corresponding increment for the chemical shift evolution. Typically a scaling factor of 2 to 3 is employed for the measurement of one-bond coupling constants, while multiplication by a factor of 10 to 15 is applied when small long-range couplings are determined. The same pulse scheme with coupling evolution period optimized for one-bond or long-range couplings allows the determination of the corresponding carbon-carbon coupling constants. The splittings of the ADEQUATE crosspeaks in the F1 dimension yield the appropriately multiplied coupling constants.

Conformational Effect of Silica-supported Poly(octadecyl acrylate) on Molecular-Shape Selectivity of Polycyclic Aromatic Hydrocarbons in RP-HPLC

Poly(octadecyl acrylate) with a terminal reactive group was synthesized by radical telomerization in various solvents. The polymers were grafted onto porous silica for use in RP-HPLC, and the molecular recognition ability was investigated along with the selectivity for the structural isomers of polycyclic aromatic hydrocarbons. The mechanism of selectivity was also investigated with differential scanning calorimetry and NMR spectroscopic observations.

Spin-state selection in solid-state NMR

Spin-state selection in solid-state NMR is demonstrated, using similar pulse sequences as used in liquid-state NMR. The different transitions of all three carbon resonances in fully 13C-labeled L-alanine are separated in different spectra. By selecting spin-states, the contribution of the J-coupling to the linewidth is removed, leading to a considerable enhancement in resolution. The spin-state-selective technique is demonstrated for magic-angle spinning frequencies from 6 to 35kHz. Other experimental conditions affecting the sensitivity of the experiments are discussed. Sensitivity losses due to the introduction of the spin-state-selective filter are shown to be acceptable. Finally, spin-state selection was used to experimentally confirm the differential broadening expected for the two transitions of the CH3 resonance.

Measurement of long range H,C couplings in natural products in orienting media: a tool for structure elucidation of natural products

In this paper we show that water insoluble compounds dissolved in poly-gamma-benzyl-glutamate are amenable to the measurement of a number of homo- and heteronuclear dipolar couplings. The sensitivity and experimental precision of dipolar couplings are sufficient to obtain a good match with the structure. In order to achieve the necessary precision for H,C dipolar couplings between protons and carbons that are not directly bound a new method for the measurement of heteronuclear long range couplings is introduced that allows a one-parameter fit to a HSQC-based experiment as reference experiment. The methodology is applied to menthol (1R, 3S, 4R).

Phenylalanine-independent biosynthesis of 1,3,5,8-tetrahydroxyxanthone. A retrobiosynthetic NMR study with root cultures of Swertia chirata

Root cultures of Swertia chirata (Gentianaceae) were grown with supplements of [1-13C]glucose, [U-13C6]glucose or [carboxy-13C]shikimic acid. 1,3,5,8-Tetrahydroxyxanthone was isolated and analysed by quantitative NMR analysis. The observed isotopomer distribution shows that 1,3,5,8-tetrahydroxyxanthone is biosynthesized via a polyketide-type pathway. The starter unit, 3-hydroxybenzoyl-CoA, is obtained from an early shikimate pathway intermediate. Phenylalanine, cinnamic acid and benzoic acid were ruled out as intermediates.

Starch biosynthesis and intermediary metabolism in maize kernels. Quantitative analysis of metabolite flux by nuclear magnetic resonance

The seeds of cereals represent an important sink for metabolites during the accumulation of storage products, and seeds are an essential component of human and animal nutrition. Understanding the metabolic interconversions (networks) underpinning storage product formation could provide the foundation for effective metabolic engineering of these primary nutritional sources. In this paper, we describe the use of retrobiosynthetic nuclear magnetic resonance analysis to establish the metabolic history of the glucose (Glc) units of starch in maize (Zea mays) kernels. Maize kernel cultures were grown with [U-(13)C(6)]Glc, [U-(13)C(12)]sucrose, or [1,2-(13)C(2)]acetate as supplements. After 19 d, starch was hydrolyzed, and the isotopomer composition of the resulting Glc was determined by quantitative nuclear magnetic resonance analysis. [1,2-(13)C(2)]Acetate was not incorporated into starch. [U-(13)C(6)]Glc or [U-(13)C(12)]sucrose gave similar labeling patterns of polysaccharide Glc units, which were dominated by [1,2,3-(13)C(3)]- and [4,5,6-(13)C(3)]-isotopomers, whereas the [U-(13)C(6)]-, [3,4,5,6-(13)C(4)]-, [1,2-(13)C(2)]-, [5,6-(13)C(2)], [3-(13)C(1)], and [4-(13)C(1)]-isotopomers were present at lower levels. These isotopomer compositions indicate that there is extensive recycling of Glc before its incorporation into starch, via the enzymes of glycolytic, glucogenic, and pentose phosphate pathways. The relatively high abundance of the [5,6-(13)C(2)]-isotopomer can be explained by the joint operation of glycolysis/glucogenesis and the pentose phosphate pathway.

Through-bond phosphorus-phosphorus connectivities in crystalline and disordered phosphates by solid-state NMR

2D 31P refocused INADEQUATE NMR experiments have been used to determine through-bond P-O-P connectivities in crystalline and disordered phosphates.

The direct detection of a hydrogen bond in the solid state by NMR through the observation of a hydrogen-bond mediated (15)N [bond] (15)N J coupling

A new method for detecting hydrogen bonds in the solid state is presented. Using two-dimensional NMR correlation experiments, it is shown that a hydrogen-bond mediated J coupling can be observed in a powder under magic-angle spinning conditions, even though the J coupling is 2 orders of magnitude smaller than the dominant anisotropic interactions encountered in solid-state NMR. Specifically, the observation of a pair of peaks in a two-dimensional 15N-15N solid-state INADEQUATE experiment due to two nitrogens that have no covalent connectivity is attributed to the presence of a J coupling across a linking hydrogen bond.

Thermodynamics, Kinetics, and Mechanism of the Reversible Formation of Oxorhenium(VII) Catecholate Complexes

Mononuclear Re(V) compounds MeReO(mtp)NC(5)H(4)X, 3, where mtpH(2) is 2-(mercaptomethyl)thiophenol have been prepared from the monomerization of [MeReO(mtp)](2) by pyridines with electron-donating substituents in the para or meta position; X = 4-Me, 4-Bu(t), 3-Me, 4-Ph, and H. Analogous compounds, MeReO(edt)N(5)H(4)X, 4, edtH(2) = 1,2-ethanedithiol, were prepared similarly. The equilibrium constants for the reaction, dimer + 2Py = 2M-Py, are in the range (2.5-31.6) x 10(2) L mol(-1). Both groups of monomeric compounds react with quinones (phenanthrenequinone, PQ, and 3,5-tert-butyl-1,2-benzoquinone, DBQ), displacing the pyridine ligand and forming Re(VII) catecholate complexes MeReO(dithiolate)PCat and MeReO(dithiolate)DBCat. With PQ, the reaction MeReO(dithiolate)Py + PQ = MeReO(dithiolate)PCat + Py is an equilibrium; values of K(Q) for different Py ligands lie in the ranges 9.2-42.7 (mtp) and 3.2-11.2 (edt) at 298 K. These second-order rate constants (L mol(-1) s(-1)) at 25 degrees C in benzene were obtained for the PQ reactions: k(f) = (5.3-15.5) x 10(-2) (mtp), (6.6-16.4) x 10(-2) (edt); k(r) = (3.63-5.71) x 10(-3) (mtp), (14.7-22.0) x 10(-3) (edt). The ranges in each case refer to the series of pyridine ligands, the forward rate constant being the largest for C(5)H(5)N, with the lowest Lewis basicity. The reactions of MeReO(dithiolate)Py with DBQ proceed to completion. Values of k(f)/L mol(-1) s(-1) fall in a narrow range, 4.02 (X = Bu(t)) to 8.4 (X = H) with the dithiolate being mtp.

The photohydration of N-alkylpyridinium salts: theory and experiment

Bicyclic aziridines formed by the irradiation of pyridinium salts in basic solution have recently been recognized to have great synthetic potential. We have undertaken a joint computational and experimental investigation of the mechanism of this photoreaction. We have computationally determined the structures and relative energies of the relevant stationary points on the lowest potential energy surface (PES) of the pyridinium and methylpyridinium ions. Two important intermediates are shown to be bound minima on the ground-state PES: azoniabenzvalene and a 6-aza[3.1.0]bicyclic ion with an exo-oriented substituent (analogous to prefulvene). We advance a mechanism which involves initial formation of this exo-bicyclic ion, followed by nitrogen migration around the ring via the azoniabenzvalene intermediate. Thus, the barrier separating the two intermediates is the factor that determines the degree of scrambling observed in the photoproducts when the carbon atoms are labeled with deuterium or substituted with additional methyl groups. For N-methylpyridinium, the exo-methyl bicyclic ion was computed to be approximately 1 kcalmol(-1) lower in energy than N-methyl-azoniabenzvalene. The transition state was computed to lie several kcal mol(-1) above the exo-methyl bicyclic ion (+8.4kcalmol(-1), 6-31G* RHF; +3.7kcalmol(-1), 6-31G* B3LYP), but still well below the energy available from the 254 nm excitation of the N-methylpyridinium ion. The computed relative energies correspond splendidly with several experimental findings which include the preference for exo products, the results of deuterium labeling, and the impact of additional substituent methyl groups on the product distribution.

An improved NMR method for the quantification of alpha-acids in hops and hop products

A new and independent method for the quantification of alpha-acids in hops and hop products has been developed. NMR was used as a qualitative method for the complete assignment of all 1H- and 13C-NMR signals of the three main alpha-acids, cohumulone (1), humulone (2) and adhumulone (3). In a 13C two-dimensional INADEQUATE experiment, the 13C-NMR spectrum of 1 was unambiguously assigned via the carbon-carbon connectivities. Use of NMR as a quantitative method allowed quantification of the pure and individual alpha-acids 1 and 2, and the determination of the absolute concentration of solutions of these compounds. Quantification of alpha-acids by NMR is less complicated and more reliable than the methods used until now.

Through-bond connectivity in solids by continuous-wave spin lock

A simple two-dimensional correlation experiment that enables determination of through-bond connectivity in the solid state is described. The experiment is performed under fast magic angle spinning (MAS) conditions. After the initial pi/2 pulse, the magnetization develops freely under the MAS Hamiltonian. The t1-period is followed by a strong spin locking pulse used as mixing period. The dipolar coupling is averaged out by magic angle spinning, and the chemical shifts and r.f.-offsets are scaled by the applied spin locking field. Hence, for strong locking conditions, the isotropic J-coupling is the dominant interaction. The mixing Hamiltonian is thus identical to the well-known TOCSY-Hamiltonian, resulting in a net through-bond magnetization transfer. The mixing-time dependence of the exchange rates is investigated. Applications to crystalline P4S7 and MgP4O11 are shown.

Oocydin A, a chlorinated macrocyclic lactone with potent anti-oomycete activity from Serratia marcescens

A unique chlorinated macrocyclic lactone, termed oocydin A, was isolated from a strain of Serratia marcescens growing as an epiphyte on Rhyncholacis pedicillata, an aquatic plant native to the Carrao river of the Venezuelan-Guyanan region of South America. The lactone has a molecular mass of 470 Da, and contains one atom of chlorine, a carboxyl group and a tetrahydrofuran ring internal to a larger macrocyclic ring. MICs of approximately 0.03 microg ml(-1) were noted for oocydin A against such phytopathogenic oomycetes as Pythium ultimum, Phytophthora parasitica, Phytophthora cinnamomi and Phytophthora citrophora. With regard to the true fungi, oocydin A had either minimal or no effect against certain Fungi Imperfecti (including several pathogens of humans), two ascomycetes and a basidiomycete. Oocydin A may have potential as an antimycotic in agricultural applications and especially for crop protection.

INADEQUATE-CR experiments in the solid state

Through-bond connectivity can be probed by J couplings. For effective two-spin systems, the INADEQUATE experiment is highly valuable in liquid-state spectroscopy. It is the purpose of this Communication to show that in-phase INADEQUATE-CR spectra, where the intensity is concentrated in only one line of the J splitted doublet, can be obtained from solid-state samples. The problem of the cancellation of nonresolved multiplet lines, as experienced typically in INADEQUATE spectra in the solid, is resolved and the (13)C spectra become simpler because the number of resonance lines is reduced. Furthermore, a gain in signal intensity by 2 can, theoretically, be achieved. We limit the discussion to two-spin systems. In the present context, a two-spin system is defined considering the J coupling only. When the dipolar coupling is also taken into account, the two-spin system will usually become a many-spin system, but in the present context this is not relevant.

Blood, sweat, and tears. Toward a rehabilitation of the INADEQUATE experiment

The double-quantum-filtered carbon-carbon correlation experiment (INADEQUATE) can be accelerated significantly through a reduction in the spin-lattice relaxation times by dissolving oxygen gas in the solution. The effect is enhanced by lowering the temperature and by pressurizing the sample tube with oxygen. This offers a fourfold reduction in the relaxation times of the carbon-13 resonances in the 125-MHz spectrum of methyl salicylate. The addition of perfluorotertiarybutanol (related to the artificial blood substitutes) increases the amount of oxygen that can be dissolved, so that without oxygen pressurization, similar reductions in the relaxation times can be achieved. The nuclear Overhauser enhancements are only slightly reduced by addition of oxygen. Polarization transfer from the directly attached protons (INEPT) further increases the sensitivity if at least one of the two coupled carbon sites is protonated, principally because the proton spin-lattice relaxation times of oxygenated samples are shortened by the relaxation agent. These modest improvements in sensitivity are in general complementary to existing enhancement schemes.

Rapid-Pulsing Artifact-Free Double-Quantum-Filtered Homonuclear Spectroscopy

Rapid pulsing artifacts are observed in the conventional phase-cycled carbon-13 2D INADEQUATE experiment. By using the product operator formalism, it is shown that they result from the effects of imperfect 90 degrees and 180 degrees excitation pulses on the most abundant molecules containing only one isolated carbon-13 nucleus. The labeled longitudinal magnetization remaining at the end of one scan is recycled by the subsequent acquisition, giving rise to multiple-quantum (p = 0, +/-1, +/-2, ellipsis) artifacts in the F1 dimension. By considering pairs of scans instead of single scans, a new phase cycle is proposed. It is based on a scheme for compensating for imperfections in the excitation cluster by a proper combination of the pulse phases in two consecutive scans. Because the artifacts are 90 degrees out of phase compared to the desired signal, a concomitant rearrangement of the receiver phase achieves suppression of all unwanted signals. Experiments are presented on menthol dissolved in CDCl3 as a test compound. Improvements in spectrum quality as well as increased sensitivity are discussed. Copyright 1998 Academic Press.

An 1H-13C-13C-edited 1H NMR experiment for making resonance assignments in the active site of heme proteins

In paramagnetic heme proteins, it is often problematic to make proton resonance assignments for heme substituents that do not have large isotropic shifts and consequently lie under the large envelope of polypeptide resonances. Furthermore, assignments that would normally be performed with the aid of HMBC experiments in diamagnetic molecules can prove difficult in the active site of paramagnetic heme proteins if T2(-1) > 2JCH. To circumvent this problem, a new method is presented to selectively detect 1H in 1Hn-13C-13C fragments biosynthetically introduced into the active site of heme proteins. The pulse sequence combines well-known building blocks such as INEPT to transfer 1H spin magnetization to bonded 13C nuclei, followed by INADEQUATE to generate 13C-13C double-quantum coherence that is selected with pulsed field gradients, and finally reverse-INEPT to transfer magnetization back to 1H nuclei for subsequent observation. The new 1Hn-13C-13C edited experiment takes advantage of the relatively large values of 1JCH and 1JCC, avoiding the long interpulse delays in HMBC that compromise the detectability of rapidly relaxing nuclei. The potential applicability of the pulse sequence is demonstrated by its contribution to the unambiguous assignment of the carbonyl carbons in the heme propionates of ferricytochrome b5.

2D-INADEQUATE Structural Assignment of Polybutene Oligomers

The structure of polybutene oligomers has been unambiguously determined using NMR techniques. We used 2D-INADEQUATE to show that the major polybutene isomer synthesized via BF(3) catalysis has the expected structure with a tert-butyl group at the beginning of the chain and the expected methylvinylidene double bond at the other end. Surprisingly, we found that the main isomer of polybutene synthesized from AlCl(3) catalysis has an isopropyl group at the beginning of the chain. A trisubstituted double bond structure has been assigned at the other end of the chain. Structural information about several minor polybutene isomers has also been determined. Formation of an isopropyl group can be rationalized by assuming a protonated cyclopropane intermediate in the propagation step. Previously, the mechanism of formation of polybutene via AlCl(3) catalysis was thought to involve exclusively the tert-butyl carbenium ion. It now appears that the mechanism is more complicated than previously thought.

Utilization of carbon from dietary polyunsaturates for brain cholesterol synthesis during early postnatal development in the rat: a 13C NMR study

Incorporation of 13C from a dietary precursor into cholesterol was studied in neonatal rats. Rats were given uniformly 13C-enriched polyunsaturated fatty acids intragastrically and total lipid extracts of liver and brain were analyzed by 13C-NMR 1, 4, 8, and 15 days later. 13C-enrichment was detected in brain but not in liver cholesterol. Maximal 13C-labeling was observed 4 days after injection of the label. Spectra revealed that 70% of newly incorporated 13C had 13C as an adjacent neighbor, the other 30% had 12C as the neighbor. Double quantum NMR revealed the arrangement in the cholesterol skeleton of the 13C-13C pairs transferred from precursors to cholesterol. Desmosterol, an intermediate of cholesterol synthesis, was identified in the spectra of brain lipids. Comparison of 13C-13C unit arrangements in both cholesterol and desmosterol allowed carbons 26 and 27 of desmosterol to be unambiguously assigned.