101
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Aller I, Meyer AJ. The oxidative protein folding machinery in plant cells. PROTOPLASMA 2013; 250:799-816. [PMID: 23090240 DOI: 10.1007/s00709-012-0463-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2012] [Accepted: 10/02/2012] [Indexed: 06/01/2023]
Abstract
Formation of intra-molecular disulfides and concomitant oxidative protein folding is essential for stability and catalytic function of many soluble and membrane-bound proteins in the endomembrane system, the mitochondrial inter-membrane space and the thylakoid lumen. Disulfide generation from free cysteines in nascent polypeptide chains is generally a catalysed process for which distinct pathways exist in all compartments. A high degree of similarities between highly diverse eukaryotic and bacterial systems for generation of protein disulfides indicates functional conservation of key processes throughout evolution. However, while many aspects about molecular function of enzymatic systems promoting disulfide formation have been demonstrated for bacterial and non-plant eukaryotic organisms, it is now clear that the plant machinery for oxidative protein folding displays distinct details, suggesting that the different pathways have been adapted to plant-specific requirements in terms of compartmentation, molecular function and regulation. Here, we aim to evaluate biological diversity by comparing the plant systems for oxidative protein folding to the respective systems from non-plant eukaryotes.
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Affiliation(s)
- Isabel Aller
- INRES-Chemical Signalling, University of Bonn, Friedrich-Ebert-Allee 144, D-53113 Bonn, Germany
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102
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Pii Y, Molesini B, Pandolfini T. The involvement of Medicago truncatula non-specific lipid transfer protein N5 in the control of rhizobial infection. PLANT SIGNALING & BEHAVIOR 2013; 8:e24836. [PMID: 23656864 PMCID: PMC3909036 DOI: 10.4161/psb.24836] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Revised: 04/26/2013] [Accepted: 04/26/2013] [Indexed: 05/29/2023]
Abstract
Cysteine-rich proteins seem to play important regulatory roles in Medicago truncatula/Sinorhizobium meliloti symbiosis. In particular, a large family of nodule-specific cysteine-rich (NCR) peptides is crucial for the differentiation of nitrogen-fixing bacteroids. The Medicago truncatula N5 protein (MtN5) is currently the only reported non-specific lipid transfer protein necessary for successful rhizobial symbiosis; in addition, MtN5 shares several characteristics with NCR peptides: a small size, a conserved cysteine-rich motif, an N-terminal signal peptide for secretion and antimicrobial activity. Unlike NCR peptides, MtN5 expression is not restricted to the root nodules and is induced during the early phases of symbiosis in root hairs and nodule primordia. Recently, MtN5 was determined to be involved in the regulation of root tissue invasion; while, it was dispensable for nodule primordia formation. Here, we discuss the hypothesis that MtN5 participates in linking the progression of bacterial invasion with restricting the competence of root hairs for infection.
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103
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Dresselhaus T, Franklin-Tong N. Male-female crosstalk during pollen germination, tube growth and guidance, and double fertilization. MOLECULAR PLANT 2013; 6:1018-36. [PMID: 23571489 DOI: 10.1093/mp/sst061] [Citation(s) in RCA: 197] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Sperm cells of flowering plants are non-motile and thus require transportation to the egg apparatus via the pollen tube to execute double fertilization. During its journey, the pollen tube interacts with various sporophytic cell types that support its growth and guide it towards the surface of the ovule. The final steps of tube guidance and sperm delivery are controlled by the cells of the female gametophyte. During fertilization, cell-cell communication events take place to achieve and maximize reproductive success. Additional layers of crosstalk exist, including self-recognition and specialized processes to prevent self-fertilization and consequent inbreeding. In this review, we focus on intercellular communication between the pollen grain/pollen tube including the sperm cells with the various sporophytic maternal tissues and the cells of the female gametophyte. Polymorphic-secreted peptides and small proteins, especially those belonging to various subclasses of small cysteine-rich proteins (CRPs), reactive oxygen species (ROS)/NO signaling, and the second messenger Ca(2+), play center stage in most of these processes.
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Affiliation(s)
- Thomas Dresselhaus
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, Universitätsstraβe 31, D-93053 Regensburg, Germany.
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104
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Burkart-Waco D, Ngo K, Dilkes B, Josefsson C, Comai L. Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific crosses. THE PLANT CELL 2013; 25:2037-55. [PMID: 23898028 PMCID: PMC3723611 DOI: 10.1105/tpc.112.108258] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Seed death resulting from hybridization between Arabidopsis thaliana and Arabidopsis arenosa has complex genetic determination and involves deregulation 5 to 8 d after pollination (DAP) of agamous-like genes and retroelements. To identify causal mechanisms, we compared transcriptomes of compatible and incompatible hybrids and parents at 3 DAP. Hybrids misexpressed endosperm and seed coat regulators and hyperactivated genes encoding ribosomal, photosynthetic, stress-related, and immune response proteins. Regulatory disruption was more severe in Columbia-0 hybrids than in C24 hybrids, consistent with the degree of incompatibility. Maternal loss-of-function alleles for endosperm growth factor transparent testa glabra2 and HAIKU1 and defense response regulators non-expressor of pathogenesis related1 and salicylic acid induction-deficient2 increased hybrid seed survival. The activation of presumed polycomb repressive complex (PRC) targets, together with a 20-fold reduction in expression of fertilization independent seed2, indicated a PRC role. Proximity to transposable elements affected natural variation for gene regulation, but transposon activation did not differ from controls. Collectively, this investigation provides candidates for multigenic orchestration of the incompatibility response through disruption of endosperm development, a novel role for communication between endosperm and maternal tissues and for pathways previously connected to immunity, but, surprisingly, does not identify a role for transposons.
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Affiliation(s)
- Diana Burkart-Waco
- Department of Plant Biology and Genome Center, University of California, Davis, California 95616
| | - Kathie Ngo
- Department of Plant Biology and Genome Center, University of California, Davis, California 95616
| | - Brian Dilkes
- Department of Horticulture and Landscape Architecture, Purdue University, Lafayette, Indiana 47907
| | - Caroline Josefsson
- Department of Biology, Vancouver Island University, Vancouver, Canada V9R 5S5
| | - Luca Comai
- Department of Plant Biology and Genome Center, University of California, Davis, California 95616
- Address correspondence to
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105
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Futahashi R, Tanaka K, Tanahashi M, Nikoh N, Kikuchi Y, Lee BL, Fukatsu T. Gene expression in gut symbiotic organ of stinkbug affected by extracellular bacterial symbiont. PLoS One 2013; 8:e64557. [PMID: 23691247 PMCID: PMC3653873 DOI: 10.1371/journal.pone.0064557] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Accepted: 04/16/2013] [Indexed: 12/21/2022] Open
Abstract
The bean bug Riptortus pedestris possesses a specialized symbiotic organ in a posterior region of the midgut, where numerous crypts harbor extracellular betaproteobacterial symbionts of the genus Burkholderia. Second instar nymphs orally acquire the symbiont from the environment, and the symbiont infection benefits the host by facilitating growth and by occasionally conferring insecticide resistance. Here we performed comparative transcriptomic analyses of insect genes expressed in symbiotic and non-symbiotic regions of the midgut dissected from Burkholderia-infected and uninfected R. pedestris. Expression sequence tag analysis of cDNA libraries and quantitative reverse transcription PCR identified a number of insect genes expressed in symbiosis- or aposymbiosis-associated patterns. For example, genes up-regulated in symbiotic relative to aposymbiotic individuals, including many cysteine-rich secreted protein genes and many cathepsin protease genes, are likely to play a role in regulating the symbiosis. Conversely, genes up-regulated in aposymbiotic relative to symbiotic individuals, including a chicken-type lysozyme gene and a defensin-like protein gene, are possibly involved in regulation of non-symbiotic bacterial infections. Our study presents the first transcriptomic data on gut symbiotic organ of a stinkbug, which provides initial clues to understanding of molecular mechanisms underlying the insect-bacterium gut symbiosis and sheds light on several intriguing commonalities between endocellular and extracellular symbiotic associations.
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Affiliation(s)
- Ryo Futahashi
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.
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106
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Haag AF, Arnold MFF, Myka KK, Kerscher B, Dall'Angelo S, Zanda M, Mergaert P, Ferguson GP. Molecular insights into bacteroid development duringRhizobium–legume symbiosis. FEMS Microbiol Rev 2013; 37:364-83. [DOI: 10.1111/1574-6976.12003] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2012] [Revised: 09/12/2012] [Accepted: 09/14/2012] [Indexed: 01/09/2023] Open
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107
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Shigenobu S, Stern DL. Aphids evolved novel secreted proteins for symbiosis with bacterial endosymbiont. Proc Biol Sci 2013; 280:20121952. [PMID: 23173201 PMCID: PMC3574423 DOI: 10.1098/rspb.2012.1952] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Aphids evolved novel cells, called bacteriocytes, that differentiate specifically to harbour the obligatory mutualistic endosymbiotic bacteria Buchnera aphidicola. The genome of the host aphid Acyrthosiphon pisum contains many orphan genes that display no similarity with genes found in other sequenced organisms, prompting us to hypothesize that some of these orphan genes are related to lineage-specific traits, such as symbiosis. We conducted deep sequencing of bacteriocytes mRNA followed by whole mount in situ hybridizations of over-represented transcripts encoding aphid-specific orphan proteins. We identified a novel class of genes that encode small proteins with signal peptides, which are often cysteine-rich, that are over-represented in bacteriocytes. These genes are first expressed at a developmental time point coincident with the incorporation of symbionts strictly in the cells that contribute to the bacteriocyte and this bacteriocyte-specific expression is maintained throughout the aphid's life. The expression pattern suggests that recently evolved secretion proteins act within bacteriocytes, perhaps to mediate the symbiosis with beneficial bacterial partners, which is reminiscent of the evolution of novel cysteine-rich secreted proteins of leguminous plants that regulate nitrogen-fixing endosymbionts.
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Affiliation(s)
- Shuji Shigenobu
- NIBB Core Research Facilities, National Institute for Basic Biology, Myodaiji, Okazaki 444-8585, Japan.
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108
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Krause C, Richter S, Knöll C, Jürgens G. Plant secretome - from cellular process to biological activity. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2013; 1834:2429-41. [PMID: 23557863 DOI: 10.1016/j.bbapap.2013.03.024] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2012] [Revised: 03/19/2013] [Accepted: 03/25/2013] [Indexed: 10/27/2022]
Abstract
Recent studies suggest that plants secrete a large number of proteins and peptides into the extracellular space. Secreted proteins play a crucial role in stress response, communication and development of organisms. Here we review the current knowledge of the secretome of more than ten plant species, studied in natural conditions or during (a)biotic stress. This review not only deals with the classical secretory route via endoplasmic reticulum and Golgi followed by proteins containing a known N-terminal signal peptide, but also covers new findings about unconventional secretion of leaderless proteins. We describe alternative secretion pathways and the involved compartments like the recently discovered EXPO. The well characterized secreted peptides that function as ligands of receptor proteins exemplify the biological significance and activity of the secretome. This article is part of a Special Issue entitled: An Updated Secretome.
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Affiliation(s)
- Cornelia Krause
- Center for Plant Molecular Biology (ZMBP), University of Tübingen, Auf der Morgenstelle 3, 72076 Tübingen, Germany
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109
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Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes. PLoS One 2013; 8:e58992. [PMID: 23527067 PMCID: PMC3601123 DOI: 10.1371/journal.pone.0058992] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2012] [Accepted: 02/08/2013] [Indexed: 12/18/2022] Open
Abstract
Plant genomes contain several hundred defensin-like (DEFL) genes that encode short cysteine-rich proteins resembling defensins, which are well known antimicrobial polypeptides. Little is known about the expression patterns or functions of many DEFLs because most were discovered recently and hence are not well represented on standard microarrays. We designed a custom Affymetrix chip consisting of probe sets for 317 and 684 DEFLs from Arabidopsis thaliana and Medicago truncatula, respectively for cataloging DEFL expression in a variety of plant organs at different developmental stages and during symbiotic and pathogenic associations. The microarray analysis provided evidence for the transcription of 71% and 90% of the DEFLs identified in Arabidopsis and Medicago, respectively, including many of the recently annotated DEFL genes that previously lacked expression information. Both model plants contain a subset of DEFLs specifically expressed in seeds or fruits. A few DEFLs, including some plant defensins, were significantly up-regulated in Arabidopsis leaves inoculated with Alternaria brassicicola or Pseudomonas syringae pathogens. Among these, some were dependent on jasmonic acid signaling or were associated with specific types of immune responses. There were notable differences in DEFL gene expression patterns between Arabidopsis and Medicago, as the majority of Arabidopsis DEFLs were expressed in inflorescences, while only a few exhibited root-enhanced expression. By contrast, Medicago DEFLs were most prominently expressed in nitrogen-fixing root nodules. Thus, our data document salient differences in DEFL temporal and spatial expression between Arabidopsis and Medicago, suggesting distinct signaling routes and distinct roles for these proteins in the two plant species.
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110
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Chevalier E, Loubert-Hudon A, Matton DP. ScRALF3, a secreted RALF-like peptide involved in cell-cell communication between the sporophyte and the female gametophyte in a solanaceous species. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2013; 73:1019-33. [PMID: 23237060 DOI: 10.1111/tpj.12096] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Revised: 11/29/2012] [Accepted: 12/06/2012] [Indexed: 05/16/2023]
Abstract
Small peptides have been shown to regulate numerous aspects of plant development through cell-cell communication. These signaling events are particularly important during reproduction, regulating gamete development and embryogenesis. Rapid alkalinization factor (RALF)-like genes, a large gene family that encodes secreted peptides, have specific or ubiquitous expression patterns. Previously, five RALF-like genes with potential involvement during reproduction were isolated from Solanum chacoense. Here, we show that ScRALF3 is an important peptide regulator of female gametophyte development. Its expression, which is auxin-inducible, is strictly regulated before and after fertilization. Down-regulation of ScRALF3 expression by RNA interference leads to the production of smaller fruits that produce fewer seeds, due to improper development of the embryo sacs. Defects include loss of embryo sac nuclei polarization, as well as an increase in asynchronous division, accounting for cellular dysfunctions and premature embryo sac development arrest during megagametogenesis. ScRALF3 is expressed in the sporophytic tissue surrounding the embryo sac, the integument and the nucellus, as revealed by in situ hybridization and GUS staining. As expected for a secreted peptide, fluorescence from an ScRALF3-GFP fusion construct is detected throughout the secretory pathway. Therefore, the ScRALF3 secreted peptide may be directly involved in the regulation of multiple aspects of cell-cell communication between the female gametophyte and its surrounding sporophytic tissue during ovule development.
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Affiliation(s)
- Eric Chevalier
- Institut de Recherche en Biologie Végétale, Département de Sciences Biologiques Université de Montréal, 4101 rue Sherbrooke est, Montréal, Québec, H1X 2B2, Canada
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111
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Chalivendra SC, Lopez-Casado G, Kumar A, Kassenbrock AR, Royer S, Tovar-Mèndez A, Covey PA, Dempsey LA, Randle AM, Stack SM, Rose JK, McClure B, Bedinger PA. Developmental onset of reproductive barriers and associated proteome changes in stigma/styles of Solanum pennellii. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:265-79. [PMID: 23166371 PMCID: PMC3528032 DOI: 10.1093/jxb/ers324] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Although self-incompatibility (SI) in plants has been studied extensively, far less is known about interspecific reproductive barriers. One interspecific barrier, known as unilateral incongruity or incompatibility (UI), occurs when species display unidirectional compatibility in interspecific crosses. In the wild tomato species Solanum pennellii, both SI and self-compatible (SC) populations express UI when crossed with domesticated tomato, offering a useful model system to dissect the molecular mechanisms involved in reproductive barriers. In this study, the timing of reproductive barrier establishment during pistil development was determined in SI and SC accessions of S. pennellii using a semi-in vivo system to track pollen-tube growth in developing styles. Both SI and UI barriers were absent in styles 5 days prior to flower opening, but were established by 2 days before flower opening, with partial barriers detected during a transition period 3-4 days before flower opening. The developmental expression dynamics of known SI factors, S-RNases and HT proteins, was also examined. The accumulation of HT-A protein coincided temporally and spatially with UI barriers in developing pistils. Proteomic analysis of stigma/styles from key developmental stages showed a switch in protein profiles from cell-division-associated proteins in immature stigma/styles to a set of proteins in mature stigma/styles that included S-RNases, HT-A protein and proteins associated with cell-wall loosening and defense responses, which could be involved in pollen-pistil interactions. Other prominent proteins in mature stigma/styles were those involved in lipid metabolism, consistent with the accumulation of lipid-rich material during pistil maturation.
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Affiliation(s)
- Subbaiah C. Chalivendra
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
- Present address: Valent BioSciences Corporation, Long Grove, IL 60047, USA
| | - Gloria Lopez-Casado
- Department of Plant Biology, 412 Mann Library Building, Cornell University, Ithaca, NY 14853, USA
- Present address: Instituto de Hortofruticultura Subtropical y Mediterránea (IHSM) ‘La Mayora’, Centro Mixto CSIC-Universidad de Málaga, E-29760 Algarrobo-Costa, Málaga, Spain
| | - Aruna Kumar
- Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA
- Present address: Amity Institute of Biotechnology, J3 block, Sector-125, Noida, Uttar Pradesh 201303, India
| | - Alina R. Kassenbrock
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
| | - Suzanne Royer
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
| | | | - Paul A. Covey
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
| | - Laura A. Dempsey
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
| | - April M. Randle
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
| | - Stephen M. Stack
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
| | - Jocelyn K.C. Rose
- Department of Plant Biology, 412 Mann Library Building, Cornell University, Ithaca, NY 14853, USA
| | - Bruce McClure
- Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA
| | - Patricia A. Bedinger
- Department of Biology, Colorado State University, Fort Collins, CO 80523-1878, USA
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112
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De Coninck B, Cammue BP, Thevissen K. Modes of antifungal action and in planta functions of plant defensins and defensin-like peptides. FUNGAL BIOL REV 2013. [DOI: 10.1016/j.fbr.2012.10.002] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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113
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Ambrose KV, Belanger FC. SOLiD-SAGE of endophyte-infected red fescue reveals numerous effects on host transcriptome and an abundance of highly expressed fungal secreted proteins. PLoS One 2012; 7:e53214. [PMID: 23285269 PMCID: PMC3532157 DOI: 10.1371/journal.pone.0053214] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Accepted: 11/27/2012] [Indexed: 11/19/2022] Open
Abstract
One of the most important plant-fungal symbiotic relationships is that of cool season grasses with endophytic fungi of the genera Epichloë and Neotyphodium. These associations often confer benefits, such as resistance to herbivores and improved drought tolerance, to the hosts. One benefit that appears to be unique to fine fescue grasses is disease resistance. As a first step towards understanding the basis of the endophyte-mediated disease resistance in Festuca rubra we carried out a SOLiD-SAGE quantitative transcriptome comparison of endophyte-free and Epichloë festucae-infected F. rubra. Over 200 plant genes involved in a wide variety of physiological processes were statistically significantly differentially expressed between the two samples. Many of the endophyte expressed genes were surprisingly abundant, with the most abundant fungal tag representing over 10% of the fungal mapped tags. Many of the abundant fungal tags were for secreted proteins. The second most abundantly expressed fungal gene was for a secreted antifungal protein and is of particular interest regarding the endophyte-mediated disease resistance. Similar genes in Penicillium and Aspergillus spp. have been demonstrated to have antifungal activity. Of the 10 epichloae whole genome sequences available, only one isolate of E. festucae and Neotyphodium gansuense var inebrians have an antifungal protein gene. The uniqueness of this gene in E. festucae from F. rubra, its transcript abundance, and the secreted nature of the protein, all suggest it may be involved in the disease resistance conferred to the host, which is a unique feature of the fine fescue-endophyte symbiosis.
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Affiliation(s)
- Karen V. Ambrose
- Department of Plant Biology and Pathology, Rutgers University, New Brunswick, New Jersey, United States of America
| | - Faith C. Belanger
- Department of Plant Biology and Pathology, Rutgers University, New Brunswick, New Jersey, United States of America
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114
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Gutierrez-Marcos JF, Constância M, Burton GJ. Maternal to offspring resource allocation in plants and mammals. Placenta 2012; 33 Suppl 2:e3-10. [PMID: 22995735 DOI: 10.1016/j.placenta.2012.08.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/21/2012] [Revised: 08/28/2012] [Accepted: 08/30/2012] [Indexed: 12/26/2022]
Abstract
Appropriate allocation of resources to the offspring is critical for successful reproduction, particularly in species that reproduce on more than one occasion. The offspring must be provisioned adequately to ensure its vigour, whereas the parent must not become so depleted such that its survival is endangered. In both flowering plants and mammals specialised structures have evolved to support the offspring during its development. In this review we consider common themes that may indicate conservation of nutrient transfer function and regulation by genomic imprinting across the two kingdoms.
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Affiliation(s)
- J F Gutierrez-Marcos
- School of Life Sciences, University of Warwick, Wellesbourne Campus, Coventry CV4 7AL, UK.
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115
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Haag AF, Arnold MFF, Myka KK, Kerscher B, Dall'Angelo S, Zanda M, Mergaert P, Ferguson GP. Molecular insights into bacteroid development duringRhizobium-legume symbiosis. FEMS Microbiol Rev 2012. [DOI: 10.1111/1574-6976.2012.12003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Affiliation(s)
- Andreas F. Haag
- School of Medicine & Dentistry, Institute of Medical Sciences, University of Aberdeen; Aberdeen; UK
| | - Markus F. F. Arnold
- School of Medicine & Dentistry, Institute of Medical Sciences, University of Aberdeen; Aberdeen; UK
| | - Kamila K. Myka
- School of Medicine & Dentistry, Institute of Medical Sciences, University of Aberdeen; Aberdeen; UK
| | - Bernhard Kerscher
- School of Medicine & Dentistry, Institute of Medical Sciences, University of Aberdeen; Aberdeen; UK
| | - Sergio Dall'Angelo
- School of Medical Sciences, Institute of Medical Sciences, University of Aberdeen; Aberdeen; UK
| | | | - Peter Mergaert
- Institut des Sciences du Végétal, Centre National de la Recherche Scientifique; Gif-sur-Yvette Cedex; France
| | - Gail P. Ferguson
- School of Medicine & Dentistry, Institute of Medical Sciences, University of Aberdeen; Aberdeen; UK
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116
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Gottwald S, Samans B, Lück S, Friedt W. Jasmonate and ethylene dependent defence gene expression and suppression of fungal virulence factors: two essential mechanisms of Fusarium head blight resistance in wheat? BMC Genomics 2012; 13:369. [PMID: 22857656 PMCID: PMC3533685 DOI: 10.1186/1471-2164-13-369] [Citation(s) in RCA: 93] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2012] [Accepted: 06/21/2012] [Indexed: 01/15/2023] Open
Abstract
BACKGROUND Fusarium head blight (FHB) caused by Fusarium species like F. graminearum is a devastating disease of wheat (Triticum aestivum) worldwide. Mycotoxins such as deoxynivalenol produced by the fungus affect plant and animal health, and cause significant reductions of grain yield and quality. Resistant varieties are the only effective way to control this disease, but the molecular events leading to FHB resistance are still poorly understood. Transcriptional profiling was conducted for the winter wheat cultivars Dream (moderately resistant) and Lynx (susceptible). The gene expressions at 32 and 72 h after inoculation with Fusarium were used to trace possible defence mechanisms and associated genes. A comparative qPCR was carried out for selected genes to analyse the respective expression patterns in the resistant cultivars Dream and Sumai 3 (Chinese spring wheat). RESULTS Among 2,169 differentially expressed genes, two putative main defence mechanisms were found in the FHB-resistant Dream cultivar. Both are defined base on their specific mode of resistance. A non-specific mechanism was based on several defence genes probably induced by jasmonate and ethylene signalling, including lipid-transfer protein, thionin, defensin and GDSL-like lipase genes. Additionally, defence-related genes encoding jasmonate-regulated proteins were up-regulated in response to FHB. Another mechanism based on the targeted suppression of essential Fusarium virulence factors comprising proteases and mycotoxins was found to be an essential, induced defence of general relevance in wheat. Moreover, similar inductions upon fungal infection were frequently observed among FHB-responsive genes of both mechanisms in the cultivars Dream and Sumai 3. CONCLUSIONS Especially ABC transporter, UDP-glucosyltransferase, protease and protease inhibitor genes associated with the defence mechanism against fungal virulence factors are apparently active in different resistant genetic backgrounds, according to reports on other wheat cultivars and barley. This was further supported in our qPCR experiments on seven genes originating from this mechanism which revealed similar activities in the resistant cultivars Dream and Sumai 3. Finally, the combination of early-stage and steady-state induction was associated with resistance, while transcript induction generally occurred later and temporarily in the susceptible cultivars. The respective mechanisms are attractive for advanced studies aiming at new resistance and toxin management strategies.
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Affiliation(s)
- Sven Gottwald
- Department of Plant Breeding, Justus-Liebig University, Institute of Agronomy and Plant Breeding I, Heinrich-Buff-Ring 26-32, Giessen, D-35392, Germany
| | - Birgit Samans
- Biometry and Population Genetics, Justus-Liebig University, Institute of Agronomy and Plant Breeding II, Heinrich-Buff-Ring 26-32, Giessen, D-35392, Germany
| | - Stefanie Lück
- Department of Plant Breeding, Justus-Liebig University, Institute of Agronomy and Plant Breeding I, Heinrich-Buff-Ring 26-32, Giessen, D-35392, Germany
| | - Wolfgang Friedt
- Department of Plant Breeding, Justus-Liebig University, Institute of Agronomy and Plant Breeding I, Heinrich-Buff-Ring 26-32, Giessen, D-35392, Germany
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117
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Expression analysis of Arabidopsis thaliana small secreted protein genes. Biosci Biotechnol Biochem 2012; 76:436-46. [PMID: 22451382 DOI: 10.1271/bbb.110649] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Small proteins secreted to the extracellular matrix in plants regulate many physiological activities, including pathogen response, material transport, and morphogenesis, but the functions of most small secreted proteins have not been elucidated except for some well-known small secreted proteins. To predict the functions and physiological roles of unidentified small secreted proteins, information on their expression patterns is valuable. Here, we report expression analysis of Arabidopsis thaliana small secreted protein (ATSP) genes that encode proteins possessing a signal peptide at N-terminal, and protein sizes were less than 100 amino acid residues. By promoter:reporter experiments, we examined the expression of 122 ATSPs, including 47 unannotated ATSPs that do not have any discernable motifs, in tissues and at the cellular level in Arabidopsis seedlings, and floral organs. As a result, 79 ATSP genes were expressed in various regions of the seedlings, and 37 ATSP genes were specifically expressed.
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118
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Becraft PW, Gutierrez-Marcos J. Endosperm development: dynamic processes and cellular innovations underlying sibling altruism. WILEY INTERDISCIPLINARY REVIEWS. DEVELOPMENTAL BIOLOGY 2012; 1:579-93. [PMID: 23801534 DOI: 10.1002/wdev.31] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The endosperm is a product of fertilization that evolved to support and nourish its genetic twin sibling embryo. Cereal endosperm accumulates starch and protein stores, which later support the germinating seedling. These nutritional stores prompted the domestication of cereals and are the focus of ongoing efforts for crop improvement and biotechnological innovations. Endosperm development entails several novel modifications to basic cellular and developmental processes. Cereals display nuclear endosperm development, which begins with a period of free nuclear division to generate a coenocyte. Cytoskeletal arrays distribute nuclei around the periphery of the cytoplasm and direct the subsequent deposition of cell wall material during cellularization. Positional cues and signaling systems function dynamically in the specification of the four major cell types: transfer cells, embryo-surrounding cells, starchy endosperm (SE), and aleurone. Genome balance, epigenetic gene regulation, and parent-of-origin effects are essential for directing these processes. Transfer cells transport solutes, including sugars and amino acids, from the maternal plant tissues into the developing grain where they are partitioned between embryo and SE cells. Cells of the embryo-surrounding region appear to coordinate development of the embryo and endosperm. As the seed matures, SE cells assimilate starch and protein stores, undergo DNA endoreduplication, and finally undergo programmed cell death. In contrast, aleurone cells follow a maturation program similar to the embryo, allowing them to survive desiccation. At germination, the aleurone cells secrete amylases and proteases that hydrolyze the storage products of the SE to nourish the germinating seedling.
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Affiliation(s)
- Philip W Becraft
- Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA.
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119
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Verma SS, Yajima WR, Rahman MH, Shah S, Liu JJ, Ekramoddoullah AKM, Kav NNV. A cysteine-rich antimicrobial peptide from Pinus monticola (PmAMP1) confers resistance to multiple fungal pathogens in canola (Brassica napus). PLANT MOLECULAR BIOLOGY 2012; 79:61-74. [PMID: 22351159 DOI: 10.1007/s11103-012-9895-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2011] [Accepted: 02/10/2012] [Indexed: 05/21/2023]
Abstract
Canola (Brassica napus), an agriculturally important oilseed crop, can be significantly affected by diseases such as sclerotinia stem rot, blackleg, and alternaria black spot resulting in significant loss of crop productivity and quality. Cysteine-rich antimicrobial peptides isolated from plants have emerged as a potential resource for protection of plants against phytopathogens. Here we report the significance of an antimicrobial peptide, PmAMP1, isolated from western white pine (Pinus monticola), in providing canola with resistance against multiple phytopathogenic fungi. The cDNA encoding PmAMP1 was successfully incorporated into the genome of B. napus, and it's in planta expression conferred greater protection against Alternaria brassicae, Leptosphaeria maculans and Sclerotinia sclerotiorum. In vitro experiments with proteins extracted from transgenic canola expressing Pm-AMP1 demonstrated its inhibitory activity by reducing growth of fungal hyphae. In addition, the in vitro synthesized peptide also inhibited the growth of the fungi. These results demonstrate that generating transgenic crops expressing PmAMP1 may be an effective and versatile method to protect susceptible crops against multiple phytopathogens.
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Affiliation(s)
- Shiv S Verma
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 4-10 Agriculture/Forestry Centre, Edmonton, AB T6G 2P5, Canada
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120
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You W, Tyczewska A, Spencer M, Daxinger L, Schmid MW, Grossniklaus U, Simon SA, Meyers BC, Matzke AJM, Matzke M. Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC PLANT BIOLOGY 2012; 12:51. [PMID: 22512782 PMCID: PMC3422182 DOI: 10.1186/1471-2229-12-51] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2011] [Accepted: 04/19/2012] [Indexed: 05/20/2023]
Abstract
BACKGROUND In plants, transposons and non-protein-coding repeats are epigenetically silenced by CG and non-CG methylation. This pattern of methylation is mediated in part by small RNAs and two specialized RNA polymerases, termed Pol IV and Pol V, in a process called RNA-directed DNA methylation. By contrast, many protein-coding genes transcribed by Pol II contain in their gene bodies exclusively CG methylation that is independent of small RNAs and Pol IV/Pol V activities. It is unclear how the different methylation machineries distinguish between transposons and genes. Here we report on a group of atypical genes that display in their coding region a transposon-like methylation pattern, which is associated with gene silencing in sporophytic tissues. RESULTS We performed a methylation-sensitive amplification polymorphism analysis to search for targets of RNA-directed DNA methylation in Arabidopsis thaliana and identified several members of a gene family encoding cysteine-rich peptides (CRPs). In leaves, the CRP genes are silent and their coding regions contain dense, transposon-like methylation in CG, CHG and CHH contexts, which depends partly on the Pol IV/Pol V pathway and small RNAs. Methylation in the coding region is reduced, however, in the synergid cells of the female gametophyte, where the CRP genes are specifically expressed. Further demonstrating that expressed CRP genes lack gene body methylation, a CRP4-GFP fusion gene under the control of the constitutive 35 S promoter remains unmethylated in leaves and is transcribed to produce a translatable mRNA. By contrast, a CRP4-GFP fusion gene under the control of a CRP4 promoter fragment acquires CG and non-CG methylation in the CRP coding region in leaves similar to the silent endogenous CRP4 gene. CONCLUSIONS Unlike CG methylation in gene bodies, which does not dramatically affect Pol II transcription, combined CG and non-CG methylation in CRP coding regions is likely to contribute to gene silencing in leaves because loss of this methylation in synergid cells is associated with CRP gene expression. We discuss this unusual methylation pattern and its alteration in synergid cells as well as the possible retrogene origin and evolutionary significance of CRP genes that are methylated like transposons.
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Affiliation(s)
- Wanhui You
- Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria
| | - Agata Tyczewska
- Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland
| | - Matthew Spencer
- Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria
| | - Lucia Daxinger
- Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria
- Epigenetics Laboratory, Queensland Institute of Medical Research, Herston, Brisbane, Queensland, Australia
| | - Marc W Schmid
- Institute of Plant Biology and Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland
| | - Ueli Grossniklaus
- Institute of Plant Biology and Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland
| | - Stacey A Simon
- Department of Plant and Soil Sciences, and Delaware Biotechnology Institute, University of Delaware, Newark, USA
| | - Blake C Meyers
- Department of Plant and Soil Sciences, and Delaware Biotechnology Institute, University of Delaware, Newark, USA
| | - Antonius JM Matzke
- Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria
| | - Marjori Matzke
- Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria
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121
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Vázquez-Lobo A, Roujol D, Zuñiga-Sánchez E, Albenne C, Piñero D, Gamboa de Buen A, Jamet E. The highly conserved spermatophyte cell wall DUF642 protein family: phylogeny and first evidence of interaction with cell wall polysaccharides in vitro. Mol Phylogenet Evol 2012; 63:510-20. [PMID: 22361214 DOI: 10.1016/j.ympev.2012.02.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2011] [Revised: 01/31/2012] [Accepted: 02/01/2012] [Indexed: 12/27/2022]
Abstract
The evolution of spermatophyte plants involved fundamental changes in cell wall structure and function which resulted from diversification of carbohydrates and proteins. Cell wall proteomic analyses identified a novel family of proteins of yet unknown function, the DUF642 (Domain of Unknown Function 642) proteins. To investigate the evolution of the DUF642 gene family, 154 gene sequences from 24 plant species were analyzed, and phylogenetic inferences were conducted using the Maximum Likelihood and Bayesian Inference methods. Orthologous genes were detected in spermatophyte species and absent in non-seed known plant genomes. Protein sequences shared conserved motifs that defined the signature of the family. Distribution of conserved motifs indicated an ancestral intragenic duplication event. Gene phylogeny documented paleoduplication events originating three or four clades, depending on root position. When based on mid-point rooting, it retrieved four monophyletic clades: A, B, C, and D. A glycosylphosphatidylinositol (GPI)-anchor site and one or two galactose-binding domains-like (GBDLs) could be predicted for some DUF642 proteins. The B, C, and D clades grouped the predicted GPI-anchored proteins. First evidence of in vitro interaction of a DUF642 protein with a cell wall polysaccharide fraction is provided. A competition assay with cellulose prevented this interaction. The degree of diversification and the conservation of the family suggested that DUF642 proteins are key components in seed plant evolution.
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Affiliation(s)
- Alejandra Vázquez-Lobo
- Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Mexico
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122
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Meng L. Roles of secreted peptides in intercellular communication and root development. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2012; 183:106-114. [PMID: 22195583 DOI: 10.1016/j.plantsci.2011.10.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2011] [Revised: 10/24/2011] [Accepted: 10/26/2011] [Indexed: 05/31/2023]
Abstract
Intercellular signaling networks control cell identity and activity in all multicellular organisms. Secreted peptides that function as extracellular ligands play essential roles in local communication between adjacent plant cells. The extracellular domain of receptor kinases bind to secreted peptides and initiate downstream cellular responses, resulting in cell proliferation, growth, or differentiation in multicellular organisms. Root growth and development are highly organized processes involving cell division, expansion, and differentiation; these processes depend on the establishment and maintenance of root apical meristem. The regulatory networks controlling root growth and development are tightly controlled by various signal transduction pathways, feedback loops, and crosstalk among signaling pathways. This review demonstrates the remarkable diversity and importance of secreted peptides in cell signaling and summarizes the current understanding of the molecular mechanisms underlying the peptide signaling cascades with particular emphasis on pathways involved in regulating root apical meristem and vascular tissue development and those involved in rhizobium-legume symbiosis. Furthermore, this review provides an integrated view of the regulatory networks that control root development, including transcription factors, phytohormones and peptide signalings. Future perspectives in peptide signaling are also discussed.
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Affiliation(s)
- Ling Meng
- Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, CA 94720-3102, USA.
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123
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Maternal control of nutrient allocation in plant seeds by genomic imprinting. Curr Biol 2012; 22:160-5. [PMID: 22245001 DOI: 10.1016/j.cub.2011.11.059] [Citation(s) in RCA: 101] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2011] [Revised: 10/25/2011] [Accepted: 11/28/2011] [Indexed: 11/20/2022]
Abstract
Imprinted genes are commonly expressed in mammalian placentas and in plant seed endosperms, where they exhibit preferential uniparental allelic expression. In mammals, imprinted genes directly regulate placental function and nutrient distribution from mother to fetus; however, none of the >60 imprinted genes thus far reported in plants have been demonstrated to play an equivalent role in regulating the flow of resources to the embryo. Here we show that imprinted Maternally expressed gene1 (Meg1) in maize is both necessary and sufficient for the establishment and differentiation of the endosperm nutrient transfer cells located at the mother:seed interface. Consistent with these findings, Meg1 also regulates maternal nutrient uptake, sucrose partitioning, and seed biomass yield. In addition, we generated an imprinted and nonimprinted synthetic Meg1 ((syn)Meg1) dosage series whereby increased dosage and absence of imprinting both resulted in an unequal investment of maternal resources into the endosperm. These findings highlight dosage regulation by genomic imprinting as being critical for maintaining a balanced distribution of maternal nutrients to filial tissues in plants, as in mammals. However, unlike in mammals, Meg1 is a maternally expressed imprinted gene that surprisingly acts to promote rather than restrict nutrient allocation to the offspring.
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124
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Abstract
The main route for CO(2) and water vapor exchange between a plant and the environment is through small pores called stomata. The accessibility of stomata and predictable division series that characterize their development provides an excellent system to address fundamental questions in biology. Stomatal cell-state transition and specification are regulated by a suite of transcription factors controlled by positional signaling via peptide ligands and transmembrane receptors. Downstream effectors include several members of the core cell-cycle genes. Environmentally induced signals are integrated into this essential developmental program to modulate stomatal development or function in response to changes in the abiotic environment. In addition, the recent identification of premitotic polarly localized proteins from both Arabidopsis and maize has laid a foundation for the future understanding of intrinsic cell polarity in plants. This review highlights the mechanisms of stomatal development through characterization of genes controlling cell-fate specification, cell polarity, cell division, and cell-cell communication during stomatal development and discusses the genetic framework linking these molecular processes with the correct spacing, density, and differentiation of stomata.
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Affiliation(s)
- Lynn Jo Pillitteri
- Department of Biology, Western Washington University, Bellingham, WA 98225, USA.
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125
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Takeuchi H, Higashiyama T. Attraction of tip-growing pollen tubes by the female gametophyte. CURRENT OPINION IN PLANT BIOLOGY 2011; 14:614-21. [PMID: 21855396 DOI: 10.1016/j.pbi.2011.07.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2011] [Revised: 06/22/2011] [Accepted: 07/24/2011] [Indexed: 05/08/2023]
Abstract
Pollen tube guidance is the mechanism whereby the direction of pollen tube growth is controlled by female cells of the pistil. Some key genes and molecules have recently been identified as being involved in pollen tube guidance. In this review article, we discuss the molecular basis of pollen tube guidance, especially in Arabidopsis thaliana, by summarizing recent progress in various plant species. Attractant molecules and receptors for gametophytic pollen tube guidance are the focus of this article.
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Affiliation(s)
- Hidenori Takeuchi
- Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Aichi, Japan
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