101
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Azubuike CC, Gatehouse AMR, Howard TP. pCAT vectors overcome inefficient electroporation of Cupriavidus necator H16. N Biotechnol 2021; 65:20-30. [PMID: 34333160 DOI: 10.1016/j.nbt.2021.07.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 07/06/2021] [Accepted: 07/24/2021] [Indexed: 10/20/2022]
Abstract
Cupriavidus necator H16 is a chemolithoautotroph with a range of industrial biotechnological applications. Advanced metabolic engineering in the bacterium, however, is impeded by low transformation efficiency, making it difficult to introduce and screen new genetic functions rapidly. This study systematically characterized the broad host range plasmids pBHR1, pBBR1MCS-2 and pKT230 used frequently for C. necator engineering. Kanamycin resistance cassette (KanR) and a truncated sequence of the replication origin (Rep) are contributing factors to C. necator low electroporation transformation efficiency. Consequently, a series of modular minimal plasmids, named pCAT, were constructed. pCAT vectors transform C. necator H16 with a > 3000-fold higher efficiency (up to 107 CFU/μg DNA) compared to control plasmids. Further, pCAT vectors are highly stable, expressing reporter proteins over several days of serial cultivation in the absence of selection pressure. Finally, they can be assembled rapidly from PCR or synthesized DNA fragments, and restriction-ligation reactions can be efficiently electroporated directly into C. necator, circumventing the requirement to use Escherichia coli for plasmid maintenance or propagation. This study demonstrates that an understanding of the behaviour of the constituent parts of plasmids in a host is key to efficient propagation of genetic information, while offering new methods for engineering a bacterium with desirable industrial biotechnological features.
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Affiliation(s)
- Christopher C Azubuike
- School of Natural and Environmental Sciences, Faculty of Science, Agriculture and Engineering, Newcastle University, Newcastle-upon-Tyne, NE1 7RX, United Kingdom; Department of Microbiology, Faculty of Science, University of Port Harcourt, East-West Road, P.M.B. 5323, Choba, Port Harcourt, Rivers State, Nigeria
| | - Angharad M R Gatehouse
- School of Natural and Environmental Sciences, Faculty of Science, Agriculture and Engineering, Newcastle University, Newcastle-upon-Tyne, NE1 7RX, United Kingdom
| | - Thomas P Howard
- School of Natural and Environmental Sciences, Faculty of Science, Agriculture and Engineering, Newcastle University, Newcastle-upon-Tyne, NE1 7RX, United Kingdom.
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102
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The Role of Metabolic Engineering Technologies for the Production of Fatty Acids in Yeast. BIOLOGY 2021; 10:biology10070632. [PMID: 34356487 PMCID: PMC8301174 DOI: 10.3390/biology10070632] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 06/22/2021] [Accepted: 06/30/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary Metabolic engineering involves the sustainable production of high-value products. E. coli and yeast, in particular, are used for such processes. Using metabolic engineering, the biosynthetic pathways of these cells are altered to obtain a high production of desired products. Fatty acids (FAs) and their derivatives are products produced using metabolic engineering. However, classical methods used for engineering yeast metabolic pathways for the production of fatty acids and their derivatives face problems such as the low supply of key precursors and product tolerance. This review introduces the different ways FAs are being produced in E. coli and yeast and the genetic manipulations for enhanced production of FAs. The review also summarizes the latest techniques (i.e., CRISPR–Cas and synthetic biology) for developing FA-producing yeast cell factories. Abstract Metabolic engineering is a cutting-edge field that aims to produce simple, readily available, and inexpensive biomolecules by applying different genetic engineering and molecular biology techniques. Fatty acids (FAs) play an important role in determining the physicochemical properties of membrane lipids and are precursors of biofuels. Microbial production of FAs and FA-derived biofuels has several advantages in terms of sustainability and cost. Conventional yeast Saccharomyces cerevisiae is one of the models used for FA synthesis. Several genetic manipulations have been performed to enhance the citrate accumulation and its conversation into acetyl-CoA, a precursor for FA synthesis. Success has been achieved in producing different chemicals, including FAs and their derivatives, through metabolic engineering. However, several hurdles such as slow growth rate, low oleaginicity, and cytotoxicity are still need to be resolved. More robust research needs to be conducted on developing microbes capable of resisting diverse environments, chemicals, and cost-effective feed requirements. Redesigning microbes to produce FAs with cutting-edge synthetic biology and CRISPR techniques can solve these problems. Here, we reviewed the technological progression of metabolic engineering techniques and genetic studies conducted on S. cerevisiae, making it suitable as a model organism and a great candidate for the production of biomolecules, especially FAs.
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103
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Bio-conversion of CO 2 into biofuels and other value-added chemicals via metabolic engineering. Microbiol Res 2021; 251:126813. [PMID: 34274880 DOI: 10.1016/j.micres.2021.126813] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 06/28/2021] [Accepted: 07/04/2021] [Indexed: 11/24/2022]
Abstract
Carbon dioxide (CO2) occurs naturally in the atmosphere as a trace gas, which is produced naturally as well as by anthropogenic activities. CO2 is a readily available source of carbon that in principle can be used as a raw material for the synthesis of valuable products. The autotrophic organisms are naturally equipped to convert CO2 into biomass by obtaining energy from sunlight or inorganic electron donors. This autotrophic CO2 fixation has been exploited in biotechnology, and microbial cell factories have been metabolically engineered to convert CO2 into biofuels and other value-added bio-based chemicals. A variety of metabolic engineering efforts for CO2 fixation ranging from basic copy, paste, and fine-tuning approaches to engineering and testing of novel synthetic CO2 fixing pathways have been demonstrated. In this paper, we review the current advances and innovations in metabolic engineering for bio-conversion of CO2 into bio biofuels and other value-added bio-based chemicals.
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104
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Bang J, Ahn JH, Lee JA, Hwang CH, Kim GB, Lee J, Lee SY. Synthetic Formatotrophs for One-Carbon Biorefinery. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2021; 8:2100199. [PMID: 34194943 PMCID: PMC8224422 DOI: 10.1002/advs.202100199] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 03/06/2021] [Indexed: 06/13/2023]
Abstract
The use of CO2 as a carbon source in biorefinery is of great interest, but the low solubility of CO2 in water and the lack of efficient CO2 assimilation pathways are challenges to overcome. Formic acid (FA), which can be easily produced from CO2 and more conveniently stored and transported than CO2, is an attractive CO2-equivalent carbon source as it can be assimilated more efficiently than CO2 by microorganisms and also provides reducing power. Although there are native formatotrophs, they grow slowly and are difficult to metabolically engineer due to the lack of genetic manipulation tools. Thus, much effort is exerted to develop efficient FA assimilation pathways and synthetic microorganisms capable of growing solely on FA (and CO2). Several innovative strategies are suggested to develop synthetic formatotrophs through rational metabolic engineering involving new enzymes and reconstructed FA assimilation pathways, and/or adaptive laboratory evolution (ALE). In this paper, recent advances in development of synthetic formatotrophs are reviewed, focusing on biological FA and CO2 utilization pathways, enzymes involved and newly developed, and metabolic engineering and ALE strategies employed. Also, future challenges in cultivating formatotrophs to higher cell densities and producing chemicals from FA and CO2 are discussed.
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Affiliation(s)
- Junho Bang
- Metabolic and Biomolecular Engineering National Research LaboratoryDepartment of Chemical and Biomolecular Engineering (BK21 Plus Program)Institute for the BioCenturyKorea Advanced Institute of Science and Technology (KAIST)Daejeon34141Republic of Korea
- Systems Metabolic Engineering and Systems Healthcare Cross‐Generation Collaborative LaboratoryKAISTDaejeon34141Republic of Korea
| | - Jung Ho Ahn
- Metabolic and Biomolecular Engineering National Research LaboratoryDepartment of Chemical and Biomolecular Engineering (BK21 Plus Program)Institute for the BioCenturyKorea Advanced Institute of Science and Technology (KAIST)Daejeon34141Republic of Korea
- Systems Metabolic Engineering and Systems Healthcare Cross‐Generation Collaborative LaboratoryKAISTDaejeon34141Republic of Korea
| | - Jong An Lee
- Metabolic and Biomolecular Engineering National Research LaboratoryDepartment of Chemical and Biomolecular Engineering (BK21 Plus Program)Institute for the BioCenturyKorea Advanced Institute of Science and Technology (KAIST)Daejeon34141Republic of Korea
- Systems Metabolic Engineering and Systems Healthcare Cross‐Generation Collaborative LaboratoryKAISTDaejeon34141Republic of Korea
| | - Chang Hun Hwang
- Metabolic and Biomolecular Engineering National Research LaboratoryDepartment of Chemical and Biomolecular Engineering (BK21 Plus Program)Institute for the BioCenturyKorea Advanced Institute of Science and Technology (KAIST)Daejeon34141Republic of Korea
- Systems Metabolic Engineering and Systems Healthcare Cross‐Generation Collaborative LaboratoryKAISTDaejeon34141Republic of Korea
| | - Gi Bae Kim
- Metabolic and Biomolecular Engineering National Research LaboratoryDepartment of Chemical and Biomolecular Engineering (BK21 Plus Program)Institute for the BioCenturyKorea Advanced Institute of Science and Technology (KAIST)Daejeon34141Republic of Korea
- Systems Metabolic Engineering and Systems Healthcare Cross‐Generation Collaborative LaboratoryKAISTDaejeon34141Republic of Korea
| | - Jinwon Lee
- Department of Chemical and Biomolecular EngineeringSogang UniversitySeoul04107Republic of Korea
- C1 Gas Refinery R&D CenterSogang UniversitySeoul04107Republic of Korea
| | - Sang Yup Lee
- Metabolic and Biomolecular Engineering National Research LaboratoryDepartment of Chemical and Biomolecular Engineering (BK21 Plus Program)Institute for the BioCenturyKorea Advanced Institute of Science and Technology (KAIST)Daejeon34141Republic of Korea
- Systems Metabolic Engineering and Systems Healthcare Cross‐Generation Collaborative LaboratoryKAISTDaejeon34141Republic of Korea
- BioInformatics Research Center and BioProcess Engineering Research CenterKAISTDaejeon34141Republic of Korea
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105
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Runguphan W, Sae-Tang K, Tanapongpipat S. Recent advances in the microbial production of isopentanol (3-Methyl-1-butanol). World J Microbiol Biotechnol 2021; 37:107. [PMID: 34043086 DOI: 10.1007/s11274-021-03074-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 05/17/2021] [Indexed: 10/21/2022]
Abstract
As the effects of climate change become increasingly severe, metabolic engineers and synthetic biologists are looking towards greener sources for transportation fuels. The design and optimization of microorganisms to produce gasoline, diesel, and jet fuel compounds from renewable feedstocks can significantly reduce dependence on fossil fuels and thereby produce fewer emissions. Over the past two decades, a tremendous amount of research has contributed to the development of microbial strains to produce advanced fuel compounds, including branched-chain higher alcohols (BCHAs) such as isopentanol (3-methyl-1-butanol; 3M1B) and isobutanol (2-methyl-1-propanol). In this review, we provide an overview of recent advances in the development of microbial strains for the production of isopentanol in both conventional and non-conventional hosts. We also highlight metabolic engineering strategies that may be employed to enhance product titers, reduce end-product toxicity, and broaden the substrate range to non-sugar carbon sources. Finally, we offer glimpses into some promising future directions in the development of isopentanol producing microbial strains.
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Affiliation(s)
- Weerawat Runguphan
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Klong 1, Klong Luang, 12120, Pathumthani, Thailand.
| | - Kittapong Sae-Tang
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Klong 1, Klong Luang, 12120, Pathumthani, Thailand
| | - Sutipa Tanapongpipat
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Klong 1, Klong Luang, 12120, Pathumthani, Thailand
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106
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Chatzipanagiotou KR, Soekhoe V, Jourdin L, Buisman CJN, Bitter JH, Strik DPBTB. Catalytic Cooperation between a Copper Oxide Electrocatalyst and a Microbial Community for Microbial Electrosynthesis. Chempluschem 2021; 86:763-777. [PMID: 33973736 DOI: 10.1002/cplu.202100119] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2021] [Revised: 04/26/2021] [Indexed: 11/06/2022]
Abstract
Electrocatalytic metals and microorganisms can be combined for CO2 conversion in microbial electrosynthesis (MES). However, a systematic investigation on the nature of interactions between metals and MES is still lacking. To investigate this nature, we integrated a copper electrocatalyst, converting CO2 to formate, with microorganisms, converting CO2 to acetate. A co-catalytic (i. e. metabolic) relationship was evident, as up to 140 mg L-1 of formate was produced solely by copper oxide, while formate was also evidently produced by copper and consumed by microorganisms producing acetate. Due to non-metabolic interactions, current density decreased by over 4 times, though acetate yield increased by 3.3 times. Despite the antimicrobial role of copper, biofilm formation was possible on a pure copper surface. Overall, we show for the first time that a CO2 -reducing copper electrocatalyst can be combined with MES under biological conditions, resulting in metabolic and non-metabolic interactions.
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Affiliation(s)
- Konstantina-Roxani Chatzipanagiotou
- Biobased Chemistry and Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands.,Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - Virangni Soekhoe
- Biobased Chemistry and Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands.,Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - Ludovic Jourdin
- Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands.,Currently at Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Cees J N Buisman
- Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - J Harry Bitter
- Biobased Chemistry and Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - David P B T B Strik
- Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
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107
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Devasia D, Wilson AJ, Heo J, Mohan V, Jain PK. A rich catalog of C-C bonded species formed in CO 2 reduction on a plasmonic photocatalyst. Nat Commun 2021; 12:2612. [PMID: 33972538 PMCID: PMC8110802 DOI: 10.1038/s41467-021-22868-9] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 04/01/2021] [Indexed: 02/03/2023] Open
Abstract
The understanding and rational design of heterogeneous catalysts for complex reactions, such as CO2 reduction, requires knowledge of elementary steps and chemical species prevalent on the catalyst surface under operating conditions. Using in situ nanoscale surface-enhanced Raman scattering, we probe the surface of a Ag nanoparticle during plasmon-excitation-driven CO2 reduction in water. Enabled by the high spatiotemporal resolution and surface sensitivity of our method, we detect a rich array of C1-C4 species formed on the photocatalytically active surface. The abundance of multi-carbon compounds, such as butanol, suggests the favorability of kinetically challenging C-C coupling on the photoexcited Ag surface. Another advance of this work is the use of isotope labeling in nanoscale probing, which allows confirmation that detected species are the intermediates and products of the catalytic reaction rather than spurious contaminants. The surface chemical knowledge made accessible by our approach will inform the modeling and engineering of catalysts.
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Affiliation(s)
- Dinumol Devasia
- grid.35403.310000 0004 1936 9991Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL USA
| | - Andrew J. Wilson
- grid.35403.310000 0004 1936 9991Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL USA ,grid.266623.50000 0001 2113 1622Present Address: Department of Chemistry, University of Louisville, Louisville, KY USA
| | - Jaeyoung Heo
- grid.35403.310000 0004 1936 9991Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL USA
| | - Varun Mohan
- grid.35403.310000 0004 1936 9991Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL USA
| | - Prashant K. Jain
- grid.35403.310000 0004 1936 9991Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL USA ,grid.35403.310000 0004 1936 9991Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL USA ,grid.35403.310000 0004 1936 9991Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL USA ,grid.35403.310000 0004 1936 9991Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL USA
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108
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Weitz S, Hermann M, Linder S, Bengelsdorf FR, Takors R, Dürre P. Isobutanol Production by Autotrophic Acetogenic Bacteria. Front Bioeng Biotechnol 2021; 9:657253. [PMID: 33912549 PMCID: PMC8072342 DOI: 10.3389/fbioe.2021.657253] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 03/22/2021] [Indexed: 02/04/2023] Open
Abstract
Two different isobutanol synthesis pathways were cloned into and expressed in the two model acetogenic bacteria Acetobacterium woodii and Clostridium ljungdahlii. A. woodii is specialized on using CO2 + H2 gas mixtures for growth and depends on sodium ions for ATP generation by a respective ATPase and Rnf system. On the other hand, C. ljungdahlii grows well on syngas (CO + H2 + CO2 mixture) and depends on protons for energy conservation. The first pathway consisted of ketoisovalerate ferredoxin oxidoreductase (Kor) from Clostridium thermocellum and bifunctional aldehyde/alcohol dehydrogenase (AdhE2) from C. acetobutylicum. Three different kor gene clusters are annotated in C. thermocellum and were all tested. Only in recombinant A. woodii strains, traces of isobutanol could be detected. Additional feeding of ketoisovalerate increased isobutanol production to 2.9 mM under heterotrophic conditions using kor3 and to 1.8 mM under autotrophic conditions using kor2. In C. ljungdahlii, isobutanol could only be detected upon additional ketoisovalerate feeding under autotrophic conditions. kor3 proved to be the best suited gene cluster. The second pathway consisted of ketoisovalerate decarboxylase from Lactococcus lactis and alcohol dehydrogenase from Corynebacterium glutamicum. For increasing the carbon flux to ketoisovalerate, genes encoding ketol-acid reductoisomerase, dihydroxy-acid dehydratase, and acetolactate synthase from C. ljungdahlii were subcloned downstream of adhA. Under heterotrophic conditions, A. woodii produced 0.2 mM isobutanol and 0.4 mM upon additional ketoisovalerate feeding. Under autotrophic conditions, no isobutanol formation could be detected. Only upon additional ketoisovalerate feeding, recombinant A. woodii produced 1.5 mM isobutanol. With C. ljungdahlii, no isobutanol was formed under heterotrophic conditions and only 0.1 mM under autotrophic conditions. Additional feeding of ketoisovalerate increased these values to 1.5 mM and 0.6 mM, respectively. A further increase to 2.4 mM and 1 mM, respectively, could be achieved upon inactivation of the ilvE gene in the recombinant C. ljungdahlii strain. Engineering the coenzyme specificity of IlvC of C. ljungdahlii from NADPH to NADH did not result in improved isobutanol production.
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Affiliation(s)
- Sandra Weitz
- Institut für Mikrobiologie und Biotechnologie, Universität Ulm, Ulm, Germany
| | - Maria Hermann
- Institut für Bioverfahrenstechnik, Universität Stuttgart, Stuttgart, Germany
| | - Sonja Linder
- Institut für Mikrobiologie und Biotechnologie, Universität Ulm, Ulm, Germany
| | - Frank R Bengelsdorf
- Institut für Mikrobiologie und Biotechnologie, Universität Ulm, Ulm, Germany
| | - Ralf Takors
- Institut für Bioverfahrenstechnik, Universität Stuttgart, Stuttgart, Germany
| | - Peter Dürre
- Institut für Mikrobiologie und Biotechnologie, Universität Ulm, Ulm, Germany
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109
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Guo S, Asset T, Atanassov P. Catalytic Hybrid Electrocatalytic/Biocatalytic Cascades for Carbon Dioxide Reduction and Valorization. ACS Catal 2021. [DOI: 10.1021/acscatal.0c04862] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Shengyuan Guo
- Department of Chemical and Biomolecular Engineering, National Fuel Cell Research Center, University of California Irvine, Irvine, California 92697, United States
| | - Tristan Asset
- Department of Chemical and Biomolecular Engineering, National Fuel Cell Research Center, University of California Irvine, Irvine, California 92697, United States
| | - Plamen Atanassov
- Department of Chemical and Biomolecular Engineering, National Fuel Cell Research Center, University of California Irvine, Irvine, California 92697, United States
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110
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Choi K. Nitrogen‐Neutral Amino Acids Refinery: Deamination of Amino Acids for Bio‐Alcohol and Ammonia Production. CHEMBIOENG REVIEWS 2021. [DOI: 10.1002/cben.202000031] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Kwon‐Young Choi
- Ajou University Department of Environmental and Safety Engineering College of Engineering Suwon, Gyeonggi-do South Korea
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111
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Gadkari S, Mirza Beigi BH, Aryal N, Sadhukhan J. Microbial electrosynthesis: is it sustainable for bioproduction of acetic acid? RSC Adv 2021; 11:9921-9932. [PMID: 35423508 PMCID: PMC8695651 DOI: 10.1039/d1ra00920f] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 03/01/2021] [Indexed: 11/23/2022] Open
Abstract
Microbial electrosynthesis (MES) is an innovative technology for electricity driven microbial reduction of carbon dioxide (CO2) to useful multi-carbon compounds. This study assesses the cradle-to-gate environmental burdens associated with acetic acid (AA) production via MES using graphene functionalized carbon felt cathode. The analysis shows that, though the environmental impact for the production of the functionalized cathode is substantially higher when compared to carbon felt with no modification, the improved productivity of the process helps in reducing the overall impact. It is also shown that, while energy used for extraction of AA is the key environmental hotspot, ion-exchange membrane and reactor medium (catholyte & anolyte) are other important contributors. A sensitivity analysis, describing four different scenarios, considering either continuous or fed-batch operation, is also described. Results show that even if MES productivity can be theoretically increased to match the highest space time yield reported for acetogenic bacteria in a continuous gas fermenter (148 g L-1 d-1), the environmental impact of AA produced using MES systems would still be significantly higher than that produced using a fossil-based process. Use of fed-batch operation and renewable (solar) energy sources do help in reducing the impact, however, the low production rates and overall high energy requirement makes large-scale implementation of such systems impractical. The analysis suggests a minimum threshold production rate of 4100 g m-2 d-1, that needs to be achieved, before MES could be seen as a sustainable alternative to fossil-based AA production.
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Affiliation(s)
- Siddharth Gadkari
- Department of Chemical and Process Engineering, University of Surrey Guildford GU2 7XH UK
- Centre for Environment and Sustainability, University of Surrey Guildford Surrey GU2 7XH UK
| | | | - Nabin Aryal
- Department of Microsystems, University of South-Eastern Norway Horten Norway
| | - Jhuma Sadhukhan
- Department of Chemical and Process Engineering, University of Surrey Guildford GU2 7XH UK
- Centre for Environment and Sustainability, University of Surrey Guildford Surrey GU2 7XH UK
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112
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Synthetic Biology Approaches To Enhance Microalgal Productivity. Trends Biotechnol 2021; 39:1019-1036. [PMID: 33541719 DOI: 10.1016/j.tibtech.2020.12.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 12/22/2020] [Accepted: 12/29/2020] [Indexed: 12/15/2022]
Abstract
The major bottleneck in commercializing biofuels and other commodities produced by microalgae is the high cost associated with phototrophic cultivation. Improving microalgal productivities could be a solution to this problem. Synthetic biology methods have recently been used to engineer the downstream production pathways in several microalgal strains. However, engineering upstream photosynthetic and carbon fixation metabolism to enhance growth, productivity, and yield has barely been explored in microalgae. We describe strategies to improve the generation of reducing power from light, as well as to improve the assimilation of CO2 by either the native Calvin cycle or synthetic alternatives. Overall, we are optimistic that recent technological advances will prompt long-awaited breakthroughs in microalgal research.
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113
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Zhang Y, Yu J, Wu Y, Li M, Zhao Y, Zhu H, Chen C, Wang M, Chen B, Tan T. Efficient production of chemicals from microorganism by metabolic engineering and synthetic biology. Chin J Chem Eng 2021. [DOI: 10.1016/j.cjche.2020.12.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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114
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Panich J, Fong B, Singer SW. Metabolic Engineering of Cupriavidus necator H16 for Sustainable Biofuels from CO 2. Trends Biotechnol 2021; 39:412-424. [PMID: 33518389 DOI: 10.1016/j.tibtech.2021.01.001] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 01/05/2021] [Accepted: 01/06/2021] [Indexed: 02/08/2023]
Abstract
Decelerating global warming is one of the predominant challenges of our time and will require conversion of CO2 to usable products and commodity chemicals. Of particular interest is the production of fuels, because the transportation sector is a major source of CO2 emissions. Here, we review recent technological advances in metabolic engineering of the hydrogen-oxidizing bacterium Cupriavidus necator H16, a chemolithotroph that naturally consumes CO2 to generate biomass. We discuss recent successes in biofuel production using this organism, and the implementation of electrolysis/artificial photosynthesis approaches that enable growth of C. necator using renewable electricity and CO2. Last, we discuss prospects of improving the nonoptimal growth of C. necator in ambient concentrations of CO2.
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Affiliation(s)
- Justin Panich
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
| | - Bonnie Fong
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Steven W Singer
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
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115
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Xu M, Tremblay PL, Ding R, Xiao J, Wang J, Kang Y, Zhang T. Photo-augmented PHB production from CO 2 or fructose by Cupriavidus necator and shape-optimized CdS nanorods. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 753:142050. [PMID: 32898811 DOI: 10.1016/j.scitotenv.2020.142050] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 08/27/2020] [Accepted: 08/27/2020] [Indexed: 06/11/2023]
Abstract
Particulate photocatalysts developed for the solar energy-driven reduction of the greenhouse gas CO2 have a small product range and low specificity. Hybrid photosynthesis expands the number of products with photocatalysts harvesting sunlight and transferring charges to microbes harboring versatile metabolisms for bioproduction. Besides CO2, abiotic photocatalysts have been employed to increase microbial production yields of reduced compounds from organic carbon substrates. Most single-reactor hybrid photosynthesis systems comprise CdS assembled in situ by microbial activity. This approach limits optimization of the morphology, crystal structure, and crystallinity of CdS for higher performance, which is usually done via synthesis methods incompatible with life. Here, shape and activity optimized CdS nanorods were hydrothermally produced and subsequently applied to Cupriavidus necator for the heterotrophic and autotrophic production of the bioplastic polyhydroxybutyrate (PHB). C. necator with CdS NR under light produced 1.5 times more PHB when compared to the same bacterium with suboptimal commercially-available CdS. Illuminated C. necator with CdS NR synthesized 1.41 g PHB from fructose over 120 h and 28 mg PHB from CO2 over 48 h. Interestingly, the beneficial effect of CdS NR was specific to C. necator as the metabolism of other microbes often employed for bioproduction including yeast and bacteria was negatively impacted. These results demonstrate that hybrid photosynthesis is more productive when the photocatalyst characteristics are optimized via a separated synthesis process prior to being coupled with microbes. Furthermore, bioproduction improvement by CdS-based photocatalyst requires specific microbial species highlighting the importance of screening efforts for the development of performant hybrid photosynthesis.
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Affiliation(s)
- Mengying Xu
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Pier-Luc Tremblay
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China
| | - Ran Ding
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China
| | - Jianxun Xiao
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Junting Wang
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Yu Kang
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Tian Zhang
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China.
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116
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Abel AJ, Clark DS. A Comprehensive Modeling Analysis of Formate-Mediated Microbial Electrosynthesis*. CHEMSUSCHEM 2021; 14:344-355. [PMID: 32996287 DOI: 10.1002/cssc.202002079] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 09/21/2020] [Indexed: 06/11/2023]
Abstract
Mediated microbial electrosynthesis (MES) represents a promising strategy for the capture and conversion of CO2 into carbon-based products. We describe the development and application of a comprehensive multiphysics model to analyze a formate-mediated MES reactor. The model shows that this system can achieve a biomass productivity of ∼1.7 g L-1 h-1 but is limited by a competitive trade-off between O2 gas/liquid mass transfer and CO2 transport to the cathode. Synthetic metabolic strategies are evaluated for formatotrophic growth, which can enable an energy efficiency of ∼21 %, a 30 % improvement over the Calvin cycle. However, carbon utilization efficiency is only ∼10 % in the best cases due to a futile CO2 cycle, so gas recycling will be necessary for greater efficiency. Finally, separating electrochemical and microbial processes into separate reactors enables a higher biomass productivity of ∼2.4 g L-1 h-1 . The mediated MES model and analysis presented here can guide process design for conversion of CO2 into renewable chemical feedstocks.
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Affiliation(s)
- Anthony J Abel
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
| | - Douglas S Clark
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
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117
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Kamiya K, Fujii K, Sugiyama M, Nakanishi S. CO 2 Electrolysis in Integrated Artificial Photosynthesis Systems. CHEM LETT 2021. [DOI: 10.1246/cl.200691] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Kazuhide Kamiya
- Research Center for Solar Energy Chemistry, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Katsushi Fujii
- Research Center for Solar Energy Chemistry, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
- Riken, Center for Advanced Photonics, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Masakazu Sugiyama
- Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
| | - Shuji Nakanishi
- Research Center for Solar Energy Chemistry, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
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118
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Extracellular Electrons Powered Microbial CO2 Upgrading: Microbial Electrosynthesis and Artificial Photosynthesis. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2021; 180:243-271. [DOI: 10.1007/10_2021_179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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119
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Lee SY, Oh YK, Lee S, Fitriana HN, Moon M, Kim MS, Lee J, Min K, Park GW, Lee JP, Lee JS. Recent developments and key barriers to microbial CO 2 electrobiorefinery. BIORESOURCE TECHNOLOGY 2021; 320:124350. [PMID: 33186841 DOI: 10.1016/j.biortech.2020.124350] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 10/25/2020] [Accepted: 10/27/2020] [Indexed: 06/11/2023]
Abstract
The electrochemical conversion of CO2 can include renewable surplus electricity storage and CO2 utilisation. This review focuses on the microbial CO2 electrobiorefinery based on microbial electrosynthesis (MES) which merges electrochemical and microbial conversion to produce biofuels and higher-value chemicals. In this review, recent developments are discussed about bioelectrochemical conversion of CO2 into biofuels and chemicals in MES via microbial CO2-fixation and electricity utilisation reactions. In addition, this review examines technical approaches to overcome the current limitations of MES including the following: engineering of the biocathode, application of electron mediators, and reactor optimisation, among others. An in-depth discussion of strategies for the CO2 electrobiorefinery is presented, including the integration of the biocathode with inorganic catalysts, screening of novel electroactive microorganisms, and metabolic engineering to improve target productivity from CO2.
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Affiliation(s)
- Soo Youn Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - You-Kwan Oh
- School of Chemical & Biomolecular Engineering, Pusan National University, Busan 46241, Republic of Korea
| | - Sangmin Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Hana Nur Fitriana
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea; Renewable Energy Engineering Department, Korea Institute of Energy Research Campus, University of Science and Technology, Daejeon 34113, South Korea
| | - Myounghoon Moon
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Min-Sik Kim
- Energy Resources Upcycling Research Laboratory, Korea Institute of Energy Research, Daejeon 34129, Republic of Korea
| | - Jiye Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Kyoungseon Min
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Gwon Woo Park
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Joon-Pyo Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Jin-Suk Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea.
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120
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Liang H, Ma X, Ning W, Liu Y, Sinskey AJ, Stephanopoulos G, Zhou K. Constructing an ethanol utilization pathway in Escherichia coli to produce acetyl-CoA derived compounds. Metab Eng 2020; 65:223-231. [PMID: 33248272 DOI: 10.1016/j.ymben.2020.11.010] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 10/30/2020] [Accepted: 11/15/2020] [Indexed: 01/05/2023]
Abstract
Engineering microbes to utilize non-conventional substrates could create short and efficient pathways to convert substrate into product. In this study, we designed and constructed a two-step heterologous ethanol utilization pathway (EUP) in Escherichia coli by using acetaldehyde dehydrogenase (encoded by ada) from Dickeya zeae and alcohol dehydrogenase (encoded by adh2) from Saccharomyces cerevisiae. This EUP can convert ethanol into acetyl-CoA without ATP consumption, and generate two molecules of NADH per molecule of ethanol. We optimized the expression of these two genes and found that ethanol consumption could be improved by expressing them in a specific order (ada-adh2) with a constitutive promoter (PgyrA). The engineered E. coli strain with EUP consumed approximately 8 g/L of ethanol in 96 h when it was used as sole carbon source. Subsequently, we combined EUP with the biosynthesis of polyhydroxybutyrate (PHB), a biodegradable polymer derived from acetyl-CoA. The engineered E. coli strain carrying EUP and PHB biosynthetic pathway produced 1.1 g/L of PHB from 10 g/L of ethanol and 1 g/L of aspartate family amino acids in 96 h. We also engineered a E. coli strain to produce 24 mg/L of prenol in an ethanol-containing medium, supporting the feasibility of converting ethanol into different classes of acetyl-CoA derived compounds.
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Affiliation(s)
- Hong Liang
- Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP), Singapore-MIT Alliance for Research and Technology, Singapore; Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Xiaoqiang Ma
- Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP), Singapore-MIT Alliance for Research and Technology, Singapore
| | - Wenbo Ning
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Yurou Liu
- Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP), Singapore-MIT Alliance for Research and Technology, Singapore; Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Anthony J Sinskey
- Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP), Singapore-MIT Alliance for Research and Technology, Singapore; Department of Biology, Massachusetts Institute of Technology, United States
| | - Gregory Stephanopoulos
- Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP), Singapore-MIT Alliance for Research and Technology, Singapore; Department of Chemical Engineering, Massachusetts Institute of Technology, United States.
| | - Kang Zhou
- Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP), Singapore-MIT Alliance for Research and Technology, Singapore; Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore.
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121
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Maxel S, King E, Zhang Y, Luo R, Li H. Leveraging Oxidative Stress to Regulate Redox Balance-Based, In Vivo Growth Selections for Oxygenase Engineering. ACS Synth Biol 2020; 9:3124-3133. [PMID: 32966747 PMCID: PMC10441625 DOI: 10.1021/acssynbio.0c00380] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Directed evolution methods based on high-throughput growth selection enable efficient discovery of enzymes with improved function in vivo. High-throughput selection is particularly useful when engineering oxygenases, which are sensitive to structural perturbations and prone to uncoupled activity. In this work, we combine the principle that reactive oxygen species (ROS) produced by uncoupled oxygenase activity are detrimental to cell fitness with a redox balance-based growth selection method for oxygenase engineering that enables concurrent advancement in catalytic activity and coupling efficiency. As a proof-of-concept, we engineered P450-BM3 for degradation of acenaphthene (ACN), a recalcitrant environmental pollutant. Selection of site-saturation mutagenesis libraries in E. coli strain MX203 identified P450-BM3 variants GVQ-AL and GVQ-D222N, which have both improved coupling efficiency and catalytic activity compared to the starting variant. Computational modeling indicates that the discovered mutations cooperatively optimize binding pocket shape complementarity to ACN, and shift the protein's conformational dynamics to favor the lid-closed, catalytically competent state. We further demonstrated that the selective pressure on coupling efficiency can be tuned by modulating cellular ROS defense mechanisms.
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122
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Tseng CP, Silberg JJ, Bennett GN, Verduzco R. 100th Anniversary of Macromolecular Science Viewpoint: Soft Materials for Microbial Bioelectronics. ACS Macro Lett 2020; 9:1590-1603. [PMID: 35617074 DOI: 10.1021/acsmacrolett.0c00573] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Bioelectronics brings together the fields of biology and microelectronics to create multifunctional devices with the potential to address longstanding technological challenges and change our way of life. Microbial electrochemical devices are a growing subset of bioelectronic devices that incorporate naturally occurring or synthetically engineered microbes into electronic devices and have broad applications including energy harvesting, chemical production, water remediation, and environmental and health monitoring. The goal of this Viewpoint is to highlight recent advances and ongoing challenges in the rapidly developing field of microbial bioelectronic devices, with an emphasis on materials challenges. We provide an overview of microbial bioelectronic devices, discuss the biotic-abiotic interface in these devices, and then present recent advances and ongoing challenges in materials related to electron transfer across the abiotic-biotic interface, microbial adhesion, redox signaling, electronic amplification, and device miniaturization. We conclude with a summary and perspective of the field of microbial bioelectronics.
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Affiliation(s)
- Chia-Ping Tseng
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| | - Jonathan J. Silberg
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
- Department of Biosciences, Rice University, Houston, Texas 77005, United States
- Department of Bioengineering, Rice University, Houston, Texas 77005, United States
| | - George N. Bennett
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
- Department of Biosciences, Rice University, Houston, Texas 77005, United States
| | - Rafael Verduzco
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
- Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
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123
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Liang B, Zhao Y, Yang J. Recent Advances in Developing Artificial Autotrophic Microorganism for Reinforcing CO 2 Fixation. Front Microbiol 2020; 11:592631. [PMID: 33240247 PMCID: PMC7680860 DOI: 10.3389/fmicb.2020.592631] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 10/21/2020] [Indexed: 11/13/2022] Open
Abstract
With the goal of achieving carbon sequestration, emission reduction and cleaner production, biological methods have been employed to convert carbon dioxide (CO2) into fuels and chemicals. However, natural autotrophic organisms are not suitable cell factories due to their poor carbon fixation efficiency and poor growth rate. Heterotrophic microorganisms are promising candidates, since they have been proven to be efficient biofuel and chemical production chassis. This review first briefly summarizes six naturally occurring CO2 fixation pathways, and then focuses on recent advances in artificially designing efficient CO2 fixation pathways. Moreover, this review discusses the transformation of heterotrophic microorganisms into hemiautotrophic microorganisms and delves further into fully autotrophic microorganisms (artificial autotrophy) by use of synthetic biological tools and strategies. Rapid developments in artificial autotrophy have laid a solid foundation for the development of efficient carbon fixation cell factories. Finally, this review highlights future directions toward large-scale applications. Artificial autotrophic microbial cell factories need further improvements in terms of CO2 fixation pathways, reducing power supply, compartmentalization and host selection.
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Affiliation(s)
- Bo Liang
- Energy-rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Qingdao Agricultural University, Qingdao, China
- Shandong Key Lab of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao, China
| | - Yukun Zhao
- Pony Testing International Group, Qingdao, China
| | - Jianming Yang
- Energy-rich Compounds Production by Photosynthetic Carbon Fixation Research Center, Qingdao Agricultural University, Qingdao, China
- Shandong Key Lab of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao, China
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124
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Claassens NJ, Bordanaba-Florit G, Cotton CA, De Maria A, Finger-Bou M, Friedeheim L, Giner-Laguarda N, Munar-Palmer M, Newell W, Scarinci G, Verbunt J, de Vries ST, Yilmaz S, Bar-Even A. Replacing the Calvin cycle with the reductive glycine pathway in Cupriavidus necator. Metab Eng 2020; 62:30-41. [DOI: 10.1016/j.ymben.2020.08.004] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 06/07/2020] [Accepted: 08/06/2020] [Indexed: 11/27/2022]
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125
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Stewart KN, Domaille DW. Enhancing Biosynthesis and Manipulating Flux in Whole Cells with Abiotic Catalysis. Chembiochem 2020; 22:469-477. [PMID: 32851745 DOI: 10.1002/cbic.202000458] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 08/20/2020] [Indexed: 01/08/2023]
Abstract
Metabolic engineering uses genetic strategies to drive flux through desired pathways. Recent work with electrochemical, photochemical, and chemocatalytic setups has revealed that these systems can also expand metabolic pathways and manipulate flux in whole cells. Electrochemical systems add or remove electrons from metabolic pathways to direct flux to more- or less-reduced products. Photochemical systems act as synthetic light-harvesting complexes and yield artificial photosynthetic organisms. Biocompatible chemocatalysis increases product scope, streamlines syntheses, and yields single-flask processes to deliver products that would be challenging to synthesize through biosynthetic means alone. Here, we exclusively highlight systems that combine abiotic systems with living whole cells, taking particular note of strategies that enable the merger of these typically disparate systems.
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Affiliation(s)
- Kelsey N Stewart
- Department of Chemistry, Colorado School of Mines, 1500 Illinois Street, Golden, CO 80403, USA
| | - Dylan W Domaille
- Department of Chemistry, Colorado School of Mines, 1500 Illinois Street, Golden, CO 80403, USA
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126
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Novak K, Baar J, Freitag P, Pflügl S. Metabolic engineering of Escherichia coli W for isobutanol production on chemically defined medium and cheese whey as alternative raw material. J Ind Microbiol Biotechnol 2020; 47:1117-1132. [PMID: 33068182 PMCID: PMC7728641 DOI: 10.1007/s10295-020-02319-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 10/03/2020] [Indexed: 11/28/2022]
Abstract
The aim of this study was to establish isobutanol production on chemically defined medium in Escherichia coli. By individually expressing each gene of the pathway, we constructed a plasmid library for isobutanol production. Strain screening on chemically defined medium showed successful production in the robust E. coli W strain, and expression vector IB 4 was selected as the most promising construct due to its high isobutanol yields and efficient substrate uptake. The investigation of different aeration strategies in combination with strain improvement and the implementation of a pulsed fed-batch were key for the development of an efficient production process. E. coli W ΔldhA ΔadhE Δpta ΔfrdA enabled aerobic isobutanol production at 38% of the theoretical maximum. Use of cheese whey as raw material resulted in longer process stability, which allowed production of 20 g l−1 isobutanol. Demonstrating isobutanol production on both chemically defined medium and a residual waste stream, this study provides valuable information for further development of industrially relevant isobutanol production processes.
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Affiliation(s)
- Katharina Novak
- Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060, Vienna, Austria
| | - Juliane Baar
- Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060, Vienna, Austria
| | - Philipp Freitag
- Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060, Vienna, Austria
| | - Stefan Pflügl
- Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
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127
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Hegner R, Neubert K, Kroner C, Holtmann D, Harnisch F. Coupled Electrochemical and Microbial Catalysis for the Production of Polymer Bricks. CHEMSUSCHEM 2020; 13:5295-5300. [PMID: 32658366 PMCID: PMC7590143 DOI: 10.1002/cssc.202001272] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 06/29/2020] [Indexed: 06/11/2023]
Abstract
Power-to-X technologies have the potential to pave the way towards a future resource-secure bioeconomy as they enable the exploitation of renewable resources and CO2 . Herein, the coupled electrocatalytic and microbial catalysis of the C5 -polymer precursors mesaconate and 2S-methylsuccinate from CO2 and electric energy by in situ coupling electrochemical and microbial catalysis at 1 L-scale was developed. In the first phase, 6.1±2.5 mm formate was produced by electrochemical CO2 reduction. In the second phase, formate served as the substrate for microbial catalysis by an engineered strain of Methylobacterium extorquens AM-1 producing 7±2 μm and 10±5 μm of mesaconate and 2S-methylsuccinate, respectively. The proof of concept showed an overall conversion efficiency of 0.2 % being 0.4 % of the theoretical maximum.
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Affiliation(s)
- Richard Hegner
- Helmholtz Center for Environmental Research GmbH – UFZDepartment of Environmental MicrobiologyPermoserstraße 1504318LeipzigGermany
| | - Katharina Neubert
- Helmholtz Center for Environmental Research GmbH – UFZDepartment of Environmental MicrobiologyPermoserstraße 1504318LeipzigGermany
| | - Cora Kroner
- DECHEMA Research InstituteIndustrial BiotechnologyTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Dirk Holtmann
- DECHEMA Research InstituteIndustrial BiotechnologyTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
- Technische Hochschule MittelhessenInstitute of Bioprocess Engineering and Pharmaceutical TechnologyWiesenstraße 1435390GießenGermany
| | - Falk Harnisch
- Helmholtz Center for Environmental Research GmbH – UFZDepartment of Environmental MicrobiologyPermoserstraße 1504318LeipzigGermany
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128
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Gong Z, Yu H, Zhang J, Li F, Song H. Microbial electro-fermentation for synthesis of chemicals and biofuels driven by bi-directional extracellular electron transfer. Synth Syst Biotechnol 2020; 5:304-313. [PMID: 32995586 PMCID: PMC7490822 DOI: 10.1016/j.synbio.2020.08.004] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/23/2020] [Accepted: 08/25/2020] [Indexed: 11/16/2022] Open
Abstract
Electroactive bacteria could perform bi-directional extracellular electron transfer (EET) to exchange electrons and energy with extracellular environments, thus playing a central role in microbial electro-fermentation (EF) process. Unbalanced fermentation and microbial electrosynthesis are the main pathways to produce value-added chemicals and biofuels. However, the low efficiency of the bi-directional EET is a dominating bottleneck in these processes. In this review, we firstly demonstrate the main bi-directional EET mechanisms during EF, including the direct EET and the shuttle-mediated EET. Then, we review representative milestones and progresses in unbalanced fermentation via anode outward EET and microbial electrosynthesis via inward EET based on these two EET mechanisms in detail. Furthermore, we summarize the main synthetic biology strategies in improving the bi-directional EET and target products synthesis, thus to enhance the efficiencies in unbalanced fermentation and microbial electrosynthesis. Lastly, a perspective on the applications of microbial electro-fermentation is provided.
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Affiliation(s)
- Ziying Gong
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China
| | - Huan Yu
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China
| | - Junqi Zhang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China
| | - Feng Li
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China
| | - Hao Song
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, 300072, China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China
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129
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Sahoo A, Chowdhury AH, Singha P, Banerjee A, Manirul Islam S, Bala T. Morphology of ZnO triggered versatile catalytic reactions towards CO2 fixation and acylation of amines at optimized reaction conditions. MOLECULAR CATALYSIS 2020. [DOI: 10.1016/j.mcat.2020.111070] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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130
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Fruehauf HM, Enzmann F, Harnisch F, Ulber R, Holtmann D. Microbial Electrosynthesis—An Inventory on Technology Readiness Level and Performance of Different Process Variants. Biotechnol J 2020; 15:e2000066. [DOI: 10.1002/biot.202000066] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 06/29/2020] [Indexed: 01/01/2023]
Affiliation(s)
- Hanna M. Fruehauf
- Industrial Biotechnology DECHEMA Research Institute Theodor‐Heuss‐Allee 25 Frankfurt am Main 60486 Germany
| | - Franziska Enzmann
- Technology and Infrastructure Evonik Industries Rodenbacher Chaussee 4 Hanau 63457 Germany
| | - Falk Harnisch
- Department of Environmental Microbiology Helmholtz‐Centre for Environmental Research GmbH ‐ UFZ Permoserstraße 15 Leipzig 04318 Germany
| | - Roland Ulber
- Bioprocess Engineering University of Kaiserslautern Erwin‐Schrödinger‐Straße 52 Kaiserslautern 64663 Germany
| | - Dirk Holtmann
- Institute of Bioprocess Engineering and Pharmaceutical Technology University of Applied Sciences Mittelhessen Wiesenstraße 14 Giessen 35390 Germany
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131
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Stöckl M, Harms S, Dinges I, Dimitrova S, Holtmann D. From CO 2 to Bioplastic - Coupling the Electrochemical CO 2 Reduction with a Microbial Product Generation by Drop-in Electrolysis. CHEMSUSCHEM 2020; 13:4086-4093. [PMID: 32677318 PMCID: PMC7496250 DOI: 10.1002/cssc.202001235] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 07/01/2020] [Indexed: 05/19/2023]
Abstract
CO2 has been electrochemically reduced to the intermediate formate, which was subsequently used as sole substrate for the production of the polymer polyhydroxybutyrate (PHB) by the microorganism Cupriavidus necator. Faradaic efficiencies (FE) up to 54 % have been reached with Sn-based gas-diffusion electrodes in physiological electrolyte. The formate containing electrolyte can be used directly as drop-in solution in the following biological polymer production by resting cells. 56 mg PHB L-1 and a ratio of 34 % PHB per cell dry weight were achieved. The calculated overall FE for the process was as high as 4 %. The direct use of the electrolyte as drop-in media in the bioconversion enables simplified processes with a minimum of intermediate purification effort. Thus, an optimal coupling between electrochemical and biotechnological processes can be realized.
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Affiliation(s)
- Markus Stöckl
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Svenja Harms
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Ida Dinges
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
- Institute for Anorganic and Analytic ChemistryGoethe-Universität Frankfurt am MainMax-von-Laue-Straße 760438Frankfurt am MainGermany
| | - Steliyana Dimitrova
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Dirk Holtmann
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
- Institute of Bioprocess Engineering and Pharmaceutical TechnologyUniversity of Applied Sciences MittelhessenWiesenstrasse 1435390GiessenGermany
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132
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Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proc Natl Acad Sci U S A 2020; 117:22452-22461. [PMID: 32820073 PMCID: PMC7486775 DOI: 10.1073/pnas.2012288117] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The Calvin cycle is the most important carbon fixation pathway in the biosphere. However, its carboxylating enzyme Rubisco also accepts oxygen, thus producing 2-phosphoglycolate. Phosphoglycolate salvage pathways were extensively studied in photoautotrophs but remain uncharacterized in chemolithoautotrophs using the Calvin cycle. Here, we study phosphoglycolate salvage in the chemolithoautotrophic model bacterium Cupriavidus necator H16. We demonstrate that this bacterium mainly reassimilates 2-phosphoglycolate via the glycerate pathway. Upon disruption of this pathway, a secondary route, which we term the malate cycle, supports photorespiration by completely oxidizing 2-phosphoglycolate to CO2. While the malate cycle was not previously known to metabolize 2-phosphoglycolate in nature, a bioinformatic analysis suggests that it may support phosphoglycolate salvage in diverse chemoautotrophic bacteria. Carbon fixation via the Calvin cycle is constrained by the side activity of Rubisco with dioxygen, generating 2-phosphoglycolate. The metabolic recycling of phosphoglycolate was extensively studied in photoautotrophic organisms, including plants, algae, and cyanobacteria, where it is referred to as photorespiration. While receiving little attention so far, aerobic chemolithoautotrophic bacteria that operate the Calvin cycle independent of light must also recycle phosphoglycolate. As the term photorespiration is inappropriate for describing phosphoglycolate recycling in these nonphotosynthetic autotrophs, we suggest the more general term “phosphoglycolate salvage.” Here, we study phosphoglycolate salvage in the model chemolithoautotroph Cupriavidus necator H16 (Ralstonia eutropha H16) by characterizing the proxy process of glycolate metabolism, performing comparative transcriptomics of autotrophic growth under low and high CO2 concentrations, and testing autotrophic growth phenotypes of gene deletion strains at ambient CO2. We find that the canonical plant-like C2 cycle does not operate in this bacterium, and instead, the bacterial-like glycerate pathway is the main route for phosphoglycolate salvage. Upon disruption of the glycerate pathway, we find that an oxidative pathway, which we term the malate cycle, supports phosphoglycolate salvage. In this cycle, glyoxylate is condensed with acetyl coenzyme A (acetyl-CoA) to give malate, which undergoes two oxidative decarboxylation steps to regenerate acetyl-CoA. When both pathways are disrupted, autotrophic growth is abolished at ambient CO2. We present bioinformatic data suggesting that the malate cycle may support phosphoglycolate salvage in diverse chemolithoautotrophic bacteria. This study thus demonstrates a so far unknown phosphoglycolate salvage pathway, highlighting important diversity in microbial carbon fixation metabolism.
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Applying Statistical Design of Experiments To Understanding the Effect of Growth Medium Components on Cupriavidus necator H16 Growth. Appl Environ Microbiol 2020; 86:AEM.00705-20. [PMID: 32561588 PMCID: PMC7440812 DOI: 10.1128/aem.00705-20] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 05/31/2020] [Indexed: 01/06/2023] Open
Abstract
Chemically defined media (CDM) for cultivation of C. necator vary in components and compositions. This lack of consensus makes it difficult to optimize new processes for the bacterium. This study employed statistical design of experiments (DOE) to understand how basic components of defined media affect C. necator growth. Our growth model predicts that C. necator can be cultivated to high cell density with components held at low concentrations, arguing that CDM for large-scale cultivation of the bacterium for industrial purposes will be economically competitive. Although existing CDM for the bacterium are without amino acids, addition of a few amino acids to growth medium shortened lag phase of growth. The interactions highlighted by our growth model show how factors can interact with each other during a process to positively or negatively affect process output. This approach is efficient, relying on few well-structured experimental runs to gain maximum information on a biological process, growth. Cupriavidus necator H16 is gaining significant attention as a microbial chassis for range of biotechnological applications. While the bacterium is a major producer of bioplastics, its lithoautotrophic and versatile metabolic capabilities make the bacterium a promising microbial chassis for biofuels and chemicals using renewable resources. It remains necessary to develop appropriate experimental resources to permit controlled bioengineering and system optimization of this microbe. In this study, we employed statistical design of experiments to gain understanding of the impact of components of defined media on C. necator growth and built a model that can predict the bacterium’s cell density based on medium components. This highlighted medium components, and interaction between components, having the most effect on growth: fructose, amino acids, trace elements, CaCl2, and Na2HPO4 contributed significantly to growth (t values of <−1.65 or >1.65); copper and histidine were found to interact and must be balanced for robust growth. Our model was experimentally validated and found to correlate well (r2 = 0.85). Model validation at large culture scales showed correlations between our model-predicted growth ranks and experimentally determined ranks at 100 ml in shake flasks (ρ = 0.87) and 1 liter in a bioreactor (ρ = 0.90). Our approach provides valuable and quantifiable insights on the impact of medium components on cell growth and can be applied to model other C. necator responses that are crucial for its deployment as a microbial chassis. This approach can be extended to other nonmodel microbes of medical and industrial biotechnological importance. IMPORTANCE Chemically defined media (CDM) for cultivation of C. necator vary in components and compositions. This lack of consensus makes it difficult to optimize new processes for the bacterium. This study employed statistical design of experiments (DOE) to understand how basic components of defined media affect C. necator growth. Our growth model predicts that C. necator can be cultivated to high cell density with components held at low concentrations, arguing that CDM for large-scale cultivation of the bacterium for industrial purposes will be economically competitive. Although existing CDM for the bacterium are without amino acids, addition of a few amino acids to growth medium shortened lag phase of growth. The interactions highlighted by our growth model show how factors can interact with each other during a process to positively or negatively affect process output. This approach is efficient, relying on few well-structured experimental runs to gain maximum information on a biological process, growth.
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134
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Young TD, Liau WT, Lee CK, Mellody M, Wong GCL, Kasko AM, Weiss PS. Selective Promotion of Adhesion of Shewanella oneidensis on Mannose-Decorated Glycopolymer Surfaces. ACS APPLIED MATERIALS & INTERFACES 2020; 12:35767-35781. [PMID: 32672931 DOI: 10.1021/acsami.0c04329] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Using glycopolymer surfaces, we have stimulated Shewanella oneidensis bacterial colonization and induced where the bacteria attach on a molecular pattern. When adherent bacteria were rinsed with methyl α-d-mannopyranoside, the glycopolymer-functionalized surfaces retained more cells than self-assembled monolayers terminated by a single mannose unit. These results suggest that the three-dimensional multivalency of the glycopolymers both promotes and retains bacterial attachment. When the methyl α-d-mannopyranoside competitor was codeposited with the cell culture, however, the mannose-based polymer was not significantly different from bare gold surfaces. The necessity for equilibration between methyl α-d-mannopyranoside and the cell culture to remove the enhancement suggests that the retention of cells on glycopolymer surfaces is kinetically controlled and is not a thermodynamic result of the cluster glycoside effect. The MshA lectin appears to facilitate the improved adhesion observed. Our findings that the surfaces studied here can induce stable initial attachment and influence the ratio of bacterial strains on the surface may be applied to harness useful microbial communities.
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Affiliation(s)
- Thomas D Young
- Department of Chemistry & Biochemistry, University of California Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Walter T Liau
- Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Calvin K Lee
- Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Michael Mellody
- Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Gerard C L Wong
- Department of Chemistry & Biochemistry, University of California Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California Los Angeles, Los Angeles, California 90095, United States
- Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Andrea M Kasko
- California NanoSystems Institute, University of California Los Angeles, Los Angeles, California 90095, United States
- Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Paul S Weiss
- Department of Chemistry & Biochemistry, University of California Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California Los Angeles, Los Angeles, California 90095, United States
- Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, United States
- Department of Material Science and Engineering, University of California Los Angeles, Los Angeles, California 90095, United States
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135
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Song HS, Jeon JM, Bhatia SK, Choi TR, Lee SM, Park SL, Lee HS, Yoon JJ, Ahn J, Lee H, Brigham CJ, Choi KY, Yang YH. Enhanced isobutanol production by co-production of polyhydroxybutyrate and cofactor engineering. J Biotechnol 2020; 320:66-73. [DOI: 10.1016/j.jbiotec.2020.06.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 05/29/2020] [Accepted: 06/18/2020] [Indexed: 01/17/2023]
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136
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Song RB, Zhu W, Fu J, Chen Y, Liu L, Zhang JR, Lin Y, Zhu JJ. Electrode Materials Engineering in Electrocatalytic CO 2 Reduction: Energy Input and Conversion Efficiency. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2020; 32:e1903796. [PMID: 31573709 DOI: 10.1002/adma.201903796] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Revised: 08/05/2019] [Indexed: 06/10/2023]
Abstract
Electrocatalytic CO2 reduction (ECR) is a promising technology to simultaneously alleviate CO2 -caused climate hazards and ever-increasing energy demands, as it can utilize CO2 in the atmosphere to provide the required feedstocks for industrial production and daily life. In recent years, substantial progress in ECR systems has been achieved by the exploitation of various novel electrode materials. The anodic materials and cathodic catalysts that have, respectively, led to high-efficiency energy input and effective heterogenous catalytic conversion in ECR systems are comprehensively reviewed. Based on the differences in the nature of energy sources and the role of materials used at the anode, the fundamentals of ECR systems, including photo-anode-assisted ECR systems and bio-anode-assisted ECR systems, are explained in detail. Additionally, the cathodic reaction mechanisms and pathways of ECR are described along with a discussion of different design strategies for cathode catalysts to enhance conversion efficiency and selectivity. The emerging challenges and some perspective on both anode materials and cathodic catalysts are also outlined for better development of ECR systems.
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Affiliation(s)
- Rong-Bin Song
- State Key Laboratory of Analytical Chemistry for Life and Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P. R. China
| | - Wenlei Zhu
- School of Mechanical and Materials Engineering, Washington State University, Pullman, WA, 99164, USA
| | - Jiaju Fu
- State Key Laboratory of Analytical Chemistry for Life and Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P. R. China
| | - Ying Chen
- State Key Laboratory of Analytical Chemistry for Life and Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P. R. China
| | - Lixia Liu
- State Key Laboratory of Analytical Chemistry for Life and Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P. R. China
| | - Jian-Rong Zhang
- State Key Laboratory of Analytical Chemistry for Life and Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P. R. China
| | - Yuehe Lin
- School of Mechanical and Materials Engineering, Washington State University, Pullman, WA, 99164, USA
| | - Jun-Jie Zhu
- State Key Laboratory of Analytical Chemistry for Life and Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P. R. China
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137
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Zhang B, Wang M, Ding J, Li Y, Cao G, Bernards MT, He Y, Shi Y. Oxidation-induced restructuring of copper sulfides for enhanced performance in CO2 electroreduction. J CO2 UTIL 2020. [DOI: 10.1016/j.jcou.2020.101169] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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138
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Bommareddy RR, Wang Y, Pearcy N, Hayes M, Lester E, Minton NP, Conradie AV. A Sustainable Chemicals Manufacturing Paradigm Using CO 2 and Renewable H 2. iScience 2020; 23:101218. [PMID: 32559729 PMCID: PMC7303982 DOI: 10.1016/j.isci.2020.101218] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 05/07/2020] [Accepted: 05/28/2020] [Indexed: 12/01/2022] Open
Abstract
The chemical industry must decarbonize to align with UN Sustainable Development Goals. A shift toward circular economies makes CO2 an attractive feedstock for producing chemicals, provided renewable H2 is available through technologies such as supercritical water (scH2O) gasification. Furthermore, high carbon and energy efficiency is paramount to favorable techno-economics, which poses a challenge to chemo-catalysis. This study demonstrates continuous gas fermentation of CO2 and H2 by the cell factory, Cupriavidus necator, to (R,R)-2,3-butanediol and isopropanol as case studies. Although a high carbon efficiency of 0.75 [(C-mol product)/(C-mol CO2)] is exemplified, the poor energy efficiency of biological CO2 fixation requires ∼8 [(mol H2)/(mol CO2)], which is techno-economically infeasible for producing commodity chemicals. Heat integration between exothermic gas fermentation and endothermic scH2O gasification overcomes this energy inefficiency. This study unlocks the promise of sustainable manufacturing using renewable feedstocks by combining the carbon efficiency of bio-catalysis with energy efficiency enforced through process engineering.
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Affiliation(s)
- Rajesh Reddy Bommareddy
- BBSRC/EPSRC Synthetic Biology Research Centre, Biodiscovery Institute (BDI), School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK.
| | - Yanming Wang
- BBSRC/EPSRC Synthetic Biology Research Centre, Biodiscovery Institute (BDI), School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Nicole Pearcy
- BBSRC/EPSRC Synthetic Biology Research Centre, Biodiscovery Institute (BDI), School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Martin Hayes
- Johnson Matthey Technology Centre, 28 Cambridge Science Park, Milton Road, Cambridge CB4 0 FP, UK
| | - Edward Lester
- Department of Chemical & Environmental Engineering, University of Nottingham, Nottingham NG7 2RD, UK
| | - Nigel P Minton
- BBSRC/EPSRC Synthetic Biology Research Centre, Biodiscovery Institute (BDI), School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Alex V Conradie
- Department of Chemical & Environmental Engineering, University of Nottingham, Nottingham NG7 2RD, UK.
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139
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Recent progress in metabolic engineering of microbial formate assimilation. Appl Microbiol Biotechnol 2020; 104:6905-6917. [PMID: 32566995 DOI: 10.1007/s00253-020-10725-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 05/25/2020] [Accepted: 06/07/2020] [Indexed: 12/27/2022]
Abstract
Formate can be efficiently produced via electrochemical or photochemical catalytic conversion of CO2, and it can be directly used as an organic carbon source by microorganisms. In theory, formate can be used as the sole carbon source for the microbial production of high-value-added chemicals. Consequently, the construction of efficient formate-assimilation pathways in microorganisms is essential for the utilization of cheap, renewable one-carbon compounds. This paper summarizes new methods of formate synthesis, as well as the natural formate utilization pathways of microorganisms with their advantages and disadvantages. Furthermore, it reviews recent progress in the design of utilization pathways for formate in microbial cells through metabolic engineering and synthetic biology. Besides, we also use the pathway-prediction algorithm comb-FBA to rationally design completely new one-carbon compounds utilization pathways. The pathway with the highest efficiency, named GAA, was corroborated by the in vitro experiments showing a carbon molar yield up to 88%. Finally, it discusses the main problems and challenges presently existing in the pathway design and strain improvement for microbial utilization of formate. KEY POINTS: • Natural and artificial design pathways of formate-assimilation was summarized. • Recent progresses in different hosts and approaches of using one-carbon compounds was reviewed. • Metabolic engineering and synthetic biology methods to improve formate utilization were discussed.
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140
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Chatzipanagiotou K, Jourdin L, Buisman CJN, Strik DPBTB, Bitter JH. CO
2
Conversion by Combining a Copper Electrocatalyst and Wild‐type Microorganisms. ChemCatChem 2020. [DOI: 10.1002/cctc.202000678] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Konstantina‐Roxani Chatzipanagiotou
- Biobased Chemistry and Technology Wageningen University & Research Bornse Weilanden 9 6708 WG Wageningen The Netherlands
- Environmental Technology Wageningen University & Research Bornse Weilanden 9 6708 WG Wageningen The Netherlands
| | - Ludovic Jourdin
- Environmental Technology Wageningen University & Research Bornse Weilanden 9 6708 WG Wageningen The Netherlands
- Department of Biotechnology Delft University of Technology van der Maasweg 9 2629 HZ Delft The Netherlands
| | - Cees J. N. Buisman
- Environmental Technology Wageningen University & Research Bornse Weilanden 9 6708 WG Wageningen The Netherlands
| | - David P. B. T. B. Strik
- Environmental Technology Wageningen University & Research Bornse Weilanden 9 6708 WG Wageningen The Netherlands
| | - Johannes H. Bitter
- Biobased Chemistry and Technology Wageningen University & Research Bornse Weilanden 9 6708 WG Wageningen The Netherlands
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141
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Abstract
AbstractAbiotic–biological hybrid systems that combine the advantages of abiotic catalysis and biotransformation for the conversion of carbon dioxide (CO2) to value-added chemicals and fuels have emerged as an appealing way to address the global energy and environmental crisis caused by increased CO2 emission. We illustrate the recent progress in this field. Here, we first review the natural CO2 fixation pathways for an in-depth understanding of the biological CO2 transformation strategy and why a sustainable feed of reducing power is important. Second, we review the recent progress in the construction of abiotic–biological hybrid systems for CO2 transformation from two aspects: (i) microbial electrosynthesis systems that utilize electricity to support whole-cell biological CO2 conversion to products of interest and (ii) photosynthetic semiconductor biohybrid systems that integrate semiconductor nanomaterials with CO2-fixing microorganisms to harness solar energy for biological CO2 transformation. Lastly, we discuss potential approaches for further improvement of abiotic–biological hybrid systems.
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142
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Lee H. Across the Board: Hyunjoo Lee on Electrochemical CO 2 Reduction. CHEMSUSCHEM 2020; 13:2799-2801. [PMID: 32293110 DOI: 10.1002/cssc.202000855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Indexed: 06/11/2023]
Abstract
In this series of articles, the board members of ChemSusChem discuss recent research articles that they consider of exceptional quality and importance for sustainability. This entry features Prof. Hyunjoo Lee, who discusses catalytic CO2 conversion into valuable chemicals using gas-phase reduction and electrochemical reduction. She reveals how imminent demands for a more sustainable society might find solutions in electrochemically synthesized chemicals.
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Affiliation(s)
- Hyunjoo Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Yusung-Gu, Daejeon, 34141, South Korea
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143
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Hu M, Xiong B, Li Z, Liu L, Li S, Zhang C, Zhang X, Bi C. A novel gene expression system for Ralstonia eutropha based on the T7 promoter. BMC Microbiol 2020; 20:121. [PMID: 32429840 PMCID: PMC7236105 DOI: 10.1186/s12866-020-01812-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 05/05/2020] [Indexed: 02/06/2023] Open
Abstract
Background Ralstonia eutropha (syn. Cupriavidus necator) is a model microorganism for studying metabolism of polyhydroxyalkanoates (PHAs) and a potential chassis for protein expression due to various advantages. Although current plasmid systems of R. eutropha provide a basic platform for gene expression, the performance of the expression-inducing systems is still limited. In addition, the sizes of the cloned genes are limited due to the large sizes of the plasmid backbones. Results In this study, an R. eutropha T7 expression system was established by integrating a T7 RNA polymerase gene driven by the PBAD promoter into the genome of R. eutropha, as well as adding a T7 promoter into a pBBR1-derived plasmid for gene expression. In addition, the essential DNA sequence necessary for pBBR1 plasmid replication was identified, and the redundant parts were deleted reducing the expression plasmid size to 3392 bp, which improved the electroporation efficiency about 4 times. As a result, the highest expression level of RFP was enhanced, and the L-arabinose concentration for expression induction was decreased 20 times. Conclusions The R. eutropha T7 expression system provides an efficient platform for protein production and synthetic biology applications.
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Affiliation(s)
- Muzi Hu
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, People's Republic of China.,Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
| | - Bin Xiong
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
| | - Zhongkang Li
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
| | - Li Liu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
| | - Siwei Li
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
| | - Chunzhi Zhang
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, People's Republic of China
| | - Xueli Zhang
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China
| | - Changhao Bi
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China. .,Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, People's Republic of China.
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144
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Yee MO, Deutzmann J, Spormann A, Rotaru AE. Cultivating electroactive microbes-from field to bench. NANOTECHNOLOGY 2020; 31:174003. [PMID: 31931483 DOI: 10.1088/1361-6528/ab6ab5] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Electromicrobiology is an emerging field investigating and exploiting the interaction of microorganisms with insoluble electron donors or acceptors. Some of the most recently categorized electroactive microorganisms became of interest to sustainable bioengineering practices. However, laboratories worldwide typically maintain electroactive microorganisms on soluble substrates, which often leads to a decrease or loss of the ability to effectively exchange electrons with solid electrode surfaces. In order to develop future sustainable technologies, we cannot rely solely on existing lab-isolates. Therefore, we must develop isolation strategies for environmental strains with electroactive properties superior to strains in culture collections. In this article, we provide an overview of the studies that isolated or enriched electroactive microorganisms from the environment using an anode as the sole electron acceptor (electricity-generating microorganisms) or a cathode as the sole electron donor (electricity-consuming microorganisms). Next, we recommend a selective strategy for the isolation of electroactive microorganisms. Furthermore, we provide a practical guide for setting up electrochemical reactors and highlight crucial electrochemical techniques to determine electroactivity and the mode of electron transfer in novel organisms.
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Affiliation(s)
- Mon Oo Yee
- Nordcee, Department of Biology, University of Southern Denmark, Odense, DK-5230, Denmark
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145
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Zhu Q, Yang D, Liu H, Sun X, Chen C, Bi J, Liu J, Wu H, Han B. Hollow Metal–Organic‐Framework‐Mediated In Situ Architecture of Copper Dendrites for Enhanced CO
2
Electroreduction. Angew Chem Int Ed Engl 2020; 59:8896-8901. [DOI: 10.1002/anie.202001216] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Qinggong Zhu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
| | - Dexin Yang
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- College of Chemistry Zhengzhou University 100 Kexue Road Zhengzhou 450001 China
| | - Huizhen Liu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Xiaofu Sun
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Chunjun Chen
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jiahui Bi
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jiyuan Liu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Haihong Wu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Shanghai 200062 China
| | - Buxing Han
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Shanghai 200062 China
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146
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Siripong W, Angela C, Tanapongpipat S, Runguphan W. Metabolic engineering of Pichia pastoris for production of isopentanol (3-Methyl-1-butanol). Enzyme Microb Technol 2020; 138:109557. [PMID: 32527534 DOI: 10.1016/j.enzmictec.2020.109557] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 03/24/2020] [Accepted: 03/26/2020] [Indexed: 12/21/2022]
Abstract
In recent years, the increasingly serious and clear effects of climate change have increased interest in renewable fuels and platform chemicals. Microbial platforms that can produce these compounds in an economically efficient way have emerged as an attractive alternative to the traditional production approaches. Here, we engineered the industrially-relevant yeast Pichia pastoris to produce the platform chemical 3-methyl-1-butanol (3M1B, isopentanol) directly from the renewable carbon source glucose. Specifically, we overexpressed the endogenous valine and leucine biosynthetic pathways to increase the production of the key pathway intermediate, 2-ketoisocaproate (2-KIC). Overexpression of the artificial keto-acid degradation pathway converted 2-KIC into 3M1B. Down-regulation of the side-product ethanol production using the CRISPR/Cas9 system led to a strain that is able to produce 3M1B at a titer of 191.0 ± 9.6 mg/L, the highest titer reported to date in a non-conventional yeast. We envision that our yeast system will pave the way for an efficient production system for this important class of platform compounds.
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Affiliation(s)
- Wiparat Siripong
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand
| | - Clara Angela
- Indonesia International Institute for Life-Sciences, Jl. Pulomas Barat Kav. 88, Kayu Putih, Pulo Gadung, Jakarta Timur, 13210, Indonesia
| | - Sutipa Tanapongpipat
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand
| | - Weerawat Runguphan
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand.
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147
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Zhu Q, Yang D, Liu H, Sun X, Chen C, Bi J, Liu J, Wu H, Han B. Hollow Metal–Organic‐Framework‐Mediated In Situ Architecture of Copper Dendrites for Enhanced CO
2
Electroreduction. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202001216] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Qinggong Zhu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
| | - Dexin Yang
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- College of Chemistry Zhengzhou University 100 Kexue Road Zhengzhou 450001 China
| | - Huizhen Liu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Xiaofu Sun
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Chunjun Chen
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jiahui Bi
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jiyuan Liu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Haihong Wu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Shanghai 200062 China
| | - Buxing Han
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Colloid and Interface and Thermodynamics Institute of Chemistry Chinese Academy of Sciences Beijing 100190 China
- University of Chinese Academy of Sciences Beijing 100049 China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Shanghai 200062 China
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148
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Formate Utilization by the Crenarchaeon Desulfurococcus amylolyticus. Microorganisms 2020; 8:microorganisms8030454. [PMID: 32210133 PMCID: PMC7143981 DOI: 10.3390/microorganisms8030454] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Revised: 03/18/2020] [Accepted: 03/20/2020] [Indexed: 12/03/2022] Open
Abstract
Formate is one of the key compounds of the microbial carbon and/or energy metabolism. It owes a significant contribution to various anaerobic syntrophic associations, and may become one of the energy storage compounds of modern energy biotechnology. Microbial growth on formate was demonstrated for different bacteria and archaea, but not yet for species of the archaeal phylum Crenarchaeota. Here, we show that Desulfurococcus amylolyticus DSM 16532, an anaerobic and hyperthermophilic Crenarchaeon, metabolises formate without the production of molecular hydrogen. Growth, substrate uptake, and production kinetics on formate, glucose, and glucose/formate mixtures exhibited similar specific growth rates and similar final cell densities. A whole cell conversion experiment on formate revealed that D. amylolyticus converts formate into carbon dioxide, acetate, citrate, and ethanol. Using bioinformatic analysis, we examined whether one of the currently known and postulated formate utilisation pathways could be operative in D. amylolyticus. This analysis indicated the possibility that D. amylolyticus uses formaldehyde producing enzymes for the assimilation of formate. Therefore, we propose that formate might be assimilated into biomass through formaldehyde dehydrogenase and the oxidative pentose phosphate pathway. These findings shed new light on the metabolic versatility of the archaeal phylum Crenarchaeota.
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149
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150
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Smith PT, Nichols EM, Cao Z, Chang CJ. Hybrid Catalysts for Artificial Photosynthesis: Merging Approaches from Molecular, Materials, and Biological Catalysis. Acc Chem Res 2020; 53:575-587. [PMID: 32124601 DOI: 10.1021/acs.accounts.9b00619] [Citation(s) in RCA: 66] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Increasing demand for sustainable energy sources continues to motivate the development of new catalytic processes that store intermittent energy in the form of chemical bonds. In this context, photosynthetic organisms harvest light to drive dark reactions reducing carbon dioxide, an abundant and accessible carbon source, to store solar energy in the form of glucose and other biomass feedstocks. Inspired by this biological process, the field of artificial photosynthesis aims to store renewable energy in chemical bonds spanning fuels, foods, medicines, and materials using light, water, and CO2 as the primary chemical feedstocks, with the added benefit of mitigating the accumulation of CO2 as a greenhouse gas in the atmosphere. As such, devising new catalyst platforms for transforming CO2 into value-added chemical products is of importance. Historically, catalyst design for artificial photosynthesis has been approached from the three traditional fields of catalysis: molecular, materials, and biological. In this Account, we show progress from our laboratory in constructing new hybrid catalysts for artificial photosynthesis that draw upon design concepts from all three of these traditional fields of catalysis and blur the boundaries between them. Starting with molecular catalysis, we incorporated biological design elements that are prevalent in enzymes into synthetic systems. Specifically, we demonstrated that proper positioning of intramolecular hydrogen bond donors or addition of intermolecular multipoint hydrogen bond donors with classic iron porphyrin and nickel cyclam platforms can substantially increase rates of CO2 reduction and break electronic scaling relationships. In parallel, we incorporated a key materials design element, namely, high surface area and porosity for maximizing active site exposure, into molecular systems. A supramolecular porous organic cage molecule was synthesized with iron porphyrin building blocks, and the porosity was observed to facilitate substrate and charge transport through the catalyst film. In turn, molecular design elements can be incorporated into materials catalysts for CO2 reduction. First, we utilized molecular synthons in a bottom-up reticular approach to drive polymerization/assembly into a bulk framework material. Second, we established an organometallic approach in which molecular ligands, including chelating ones, are adsorbed onto a bulk inorganic solid to create and tune new active sites on surfaces. Finally, we describe two examples in which molecular, materials, and biological design elements are all integrated to catalyze the reduction of CO2 into CH4 using a hybrid biological-materials interface with sustainably generated H2 as the reductant or to reduce CO into value-added C2 products acetate and ethanol using a hybrid molecular-materials interface to construct a biomimetic, bimetallic active site. Taken together, our program in catalysis for energy and sustainability has revealed that combining more conventional design strategies in synergistic ways can lead to advances in artificial photosynthesis.
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Affiliation(s)
- Peter T. Smith
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Eva M. Nichols
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Zhi Cao
- State Key Laboratory of Coal Conversion, Institute of Coal Chemistry, Chinese Academy of Sciences, Taiyuan 030001, China
- National Energy Center for Coal to Liquids, Synfuels CHINA Co., Ltd, Beijing 101400, China
| | - Christopher J. Chang
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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