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For: Ruiz-Jarabo CM, Arias A, Baranowski E, Escarmís C, Domingo E. Memory in viral quasispecies. J Virol 2000;74:3543-7. [PMID: 10729128 PMCID: PMC111862 DOI: 10.1128/jvi.74.8.3543-3547.2000] [Citation(s) in RCA: 153] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
101
Briones C, Bastolla U. Protein evolution in viral quasispecies under selective pressure: A thermodynamic and phylogenetic analysis. Gene 2005;347:237-46. [PMID: 15725390 DOI: 10.1016/j.gene.2004.12.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2004] [Revised: 11/23/2004] [Accepted: 12/10/2004] [Indexed: 01/21/2023]
102
Mahy BW. Foot-and-mouth disease virus evolution: exploring pathways towards virus extinction. Curr Top Microbiol Immunol 2005;288:149-73. [PMID: 15648178 PMCID: PMC7121672 DOI: 10.1007/3-540-27109-0_7] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
103
Beck MA, Handy J, Levander OA. Host nutritional status: the neglected virulence factor. Trends Microbiol 2004;12:417-23. [PMID: 15337163 PMCID: PMC7127785 DOI: 10.1016/j.tim.2004.07.007] [Citation(s) in RCA: 185] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
104
Vabret A. [Emergence and species barriers]. Med Mal Infect 2004;34:506-13. [PMID: 15620054 PMCID: PMC7126275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2023]
105
[Emergence and species barriers]. Med Mal Infect 2004;34. [PMID: 15620054 PMCID: PMC7126275 DOI: 10.1016/j.medmal.2004.07.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
106
Bolin SR, Grooms DL. Origination and consequences of bovine viral diarrhea virus diversity. Vet Clin North Am Food Anim Pract 2004;20:51-68. [PMID: 15062474 PMCID: PMC7119071 DOI: 10.1016/j.cvfa.2003.11.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
107
Arias A, Ruiz-Jarabo CM, Escarmís C, Domingo E. Fitness increase of memory genomes in a viral quasispecies. J Mol Biol 2004;339:405-12. [PMID: 15136042 DOI: 10.1016/j.jmb.2004.03.061] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2004] [Revised: 03/22/2004] [Accepted: 03/23/2004] [Indexed: 11/18/2022]
108
Novella IS, Reissig DD, Wilke CO. Density-dependent selection in vesicular stomatitis virus. J Virol 2004;78:5799-804. [PMID: 15140977 PMCID: PMC415817 DOI: 10.1128/jvi.78.11.5799-5804.2004] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2003] [Accepted: 01/14/2004] [Indexed: 12/15/2022]  Open
109
Pariente N, Pernas M, de la Rosa R, Gómez-Mariano G, Fernández G, Rubio A, López M, Benito JM, López-Galíndez C, Leal M, Domingo E, Martinez MA, Mas A. Long-term suppression of plasma viremia with highly active antiretroviral therapy despite virus evolution and very limited selection of drug-resistant genotypes. J Med Virol 2004;73:350-61. [PMID: 15170628 DOI: 10.1002/jmv.20098] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
110
Bretscher MT, Althaus CL, Müller V, Bonhoeffer S. Recombination in HIV and the evolution of drug resistance: for better or for worse? Bioessays 2004;26:180-8. [PMID: 14745836 DOI: 10.1002/bies.10386] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
111
Novella IS. Negative effect of genetic bottlenecks on the adaptability of vesicular stomatitis virus. J Mol Biol 2004;336:61-7. [PMID: 14741203 DOI: 10.1016/j.jmb.2003.12.002] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
112
Ruiz-Jarabo CM, Miller E, Gómez-Mariano G, Domingo E. Synchronous loss of quasispecies memory in parallel viral lineages: a deterministic feature of viral quasispecies. J Mol Biol 2003;333:553-63. [PMID: 14556744 DOI: 10.1016/j.jmb.2003.08.054] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
113
von Wagner M, Lee JH, Rüster B, Kronenberger B, Sarrazin C, Roth WK, Zeuzem S. Dynamics of hepatitis C virus quasispecies turnover during interferon-alpha treatment. J Viral Hepat 2003;10:413-22. [PMID: 14633173 DOI: 10.1046/j.1365-2893.2003.00457.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
114
Baranowski E, Molina N, Núñez JI, Sobrino F, Sáiz M. Recovery of infectious foot-and-mouth disease virus from suckling mice after direct inoculation with in vitro-transcribed RNA. J Virol 2003;77:11290-5. [PMID: 14512578 PMCID: PMC224978 DOI: 10.1128/jvi.77.20.11290-11295.2003] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
115
Mateo R, Díaz A, Baranowski E, Mateu MG. Complete alanine scanning of intersubunit interfaces in a foot-and-mouth disease virus capsid reveals critical contributions of many side chains to particle stability and viral function. J Biol Chem 2003;278:41019-27. [PMID: 12857761 DOI: 10.1074/jbc.m304990200] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
116
Franco S, Giménez-Barcons M, Puig-Basagoiti F, Furcic I, Sánchez-Tapias JM, Rodés J, Sáiz JC. Characterization and evolution of NS5A quasispecies of hepatitis C virus genotype 1b in patients with different stages of liver disease. J Med Virol 2003;71:195-204. [PMID: 12938193 DOI: 10.1002/jmv.10470] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
117
Emmenegger EJ, Troyer RM, Kurath G. Characterization of the mutant spectra of a fish RNA virus within individual hosts during natural infections. Virus Res 2003;96:15-25. [PMID: 12951262 DOI: 10.1016/s0168-1702(03)00169-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
118
Briones C, Domingo E, Molina-París C. Memory in retroviral quasispecies: experimental evidence and theoretical model for human immunodeficiency virus. J Mol Biol 2003;331:213-29. [PMID: 12875847 PMCID: PMC7173031 DOI: 10.1016/s0022-2836(03)00661-2] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
119
Domingo E. Quasispecies and the development of new antiviral strategies. PROGRESS IN DRUG RESEARCH. FORTSCHRITTE DER ARZNEIMITTELFORSCHUNG. PROGRES DES RECHERCHES PHARMACEUTIQUES 2003;60:133-58. [PMID: 12790341 DOI: 10.1007/978-3-0348-8012-1_4] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
120
Wilke CO, Novella IS. Phenotypic mixing and hiding may contribute to memory in viral quasispecies. BMC Microbiol 2003;3:11. [PMID: 12795816 PMCID: PMC165440 DOI: 10.1186/1471-2180-3-11] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2003] [Accepted: 06/09/2003] [Indexed: 12/31/2022]  Open
121
Domingo E, Escarmís C, Baranowski E, Ruiz-Jarabo CM, Carrillo E, Núñez JI, Sobrino F. Evolution of foot-and-mouth disease virus. Virus Res 2003;91:47-63. [PMID: 12527437 DOI: 10.1016/s0168-1702(02)00259-9] [Citation(s) in RCA: 221] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
122
Jackwood DJ, Sommer SE. Identification of infectious bursal disease virus quasispecies in commercial vaccines and field isolates of this double-stranded RNA virus. Virology 2002;304:105-13. [PMID: 12490408 DOI: 10.1006/viro.2002.1724] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
123
Quiñones-Mateu ME, Arts EJ. Fitness of drug resistant HIV-1: methodology and clinical implications. Drug Resist Updat 2002;5:224-33. [PMID: 12531179 DOI: 10.1016/s1368-7646(02)00123-1] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
124
van der Werf S. Variabilité génétique des virus à ARN. ANNALES DE L'INSTITUT PASTEUR. ACTUALITES 2002;11:19-32. [PMID: 32288232 PMCID: PMC7146816 DOI: 10.1016/s0924-4204(02)85002-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
125
Chao L, Rang CU, Wong LE. Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage phi6. J Virol 2002;76:3276-81. [PMID: 11884552 PMCID: PMC136006 DOI: 10.1128/jvi.76.7.3276-3281.2002] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
126
Domingo E, Mas A, Yuste E, Pariente N, Sierra S, Gutiérrez-Riva M, Menéndez-Arias L. Virus population dynamics, fitness variations and the control of viral disease: an update. PROGRESS IN DRUG RESEARCH. FORTSCHRITTE DER ARZNEIMITTELFORSCHUNG. PROGRES DES RECHERCHES PHARMACEUTIQUES 2002;57:77-115. [PMID: 11728003 DOI: 10.1007/978-3-0348-8308-5_2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
127
Domingo E, Ruiz-Jarabo CM, Sierra S, Arias A, Pariente N, Baranowski E, Escarmis C. Emergence and selection of RNA virus variants: memory and extinction. Virus Res 2002;82:39-44. [PMID: 11885948 DOI: 10.1016/s0168-1702(01)00385-9] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
128
Ruíz-Jarabo CM, Arias A, Molina-París C, Briones C, Baranowski E, Escarmís C, Domingo E. Duration and fitness dependence of quasispecies memory. J Mol Biol 2002;315:285-96. [PMID: 11786012 DOI: 10.1006/jmbi.2001.5232] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
129
Quasispecies Theory in Virology. J Virol 2002;76:463-465. [PMID: 33739796 DOI: 10.1128/jvi.76.1.463-465.2002] [Citation(s) in RCA: 110] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
130
Holmes EC, Moya A. Is the quasispecies concept relevant to RNA viruses? J Virol 2002;76:460-5. [PMID: 11739715 PMCID: PMC135735 DOI: 10.1128/jvi.76.1.460-462.2002] [Citation(s) in RCA: 85] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
131
Cabot B, Martell M, Esteban JI, Piron M, Otero T, Esteban R, Guardia J, Gómez J. Longitudinal evaluation of the structure of replicating and circulating hepatitis C virus quasispecies in nonprogressive chronic hepatitis C patients. J Virol 2001;75:12005-13. [PMID: 11711591 PMCID: PMC116096 DOI: 10.1128/jvi.75.24.12005-12013.2001] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
132
Chiou SS, Chen WJ. Mutations in the NS3 gene and 3'-NCR of Japanese encephalitis virus isolated from an unconventional ecosystem and implications for natural attenuation of the virus. Virology 2001;289:129-36. [PMID: 11601924 DOI: 10.1006/viro.2001.1033] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
133
Amexis G, Oeth P, Abel K, Ivshina A, Pelloquin F, Cantor CR, Braun A, Chumakov K, Brau A. Quantitative mutant analysis of viral quasispecies by chip-based matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry. Proc Natl Acad Sci U S A 2001;98:12097-102. [PMID: 11593021 PMCID: PMC59774 DOI: 10.1073/pnas.211423298] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/13/2001] [Indexed: 11/18/2022]  Open
134
Baranowski E, Ruiz-Jarabo CM, Lim F, Domingo E. Foot-and-mouth disease virus lacking the VP1 G-H loop: the mutant spectrum uncovers interactions among antigenic sites for fitness gain. Virology 2001;288:192-202. [PMID: 11601891 DOI: 10.1006/viro.2001.1096] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
135
Schneider WL, Roossinck MJ. Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions. J Virol 2001;75:6566-71. [PMID: 11413324 PMCID: PMC114380 DOI: 10.1128/jvi.75.14.6566-6571.2001] [Citation(s) in RCA: 190] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
136
Arias A, Lázaro E, Escarmís C, Domingo E. Molecular intermediates of fitness gain of an RNA virus: characterization of a mutant spectrum by biological and molecular cloning. J Gen Virol 2001;82:1049-1060. [PMID: 11297679 DOI: 10.1099/0022-1317-82-5-1049] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
137
de Ronde A, van Dooren M, van Der Hoek L, Bouwhuis D, de Rooij E, van Gemen B, de Boer R, Goudsmit J. Establishment of new transmissible and drug-sensitive human immunodeficiency virus type 1 wild types due to transmission of nucleoside analogue-resistant virus. J Virol 2001;75:595-602. [PMID: 11134272 PMCID: PMC113955 DOI: 10.1128/jvi.75.2.595-602.2001] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
138
von Herrath MG. Obstacles to identifying viruses that cause autoimmune disease. J Neuroimmunol 2000;107:154-60. [PMID: 10854650 DOI: 10.1016/s0165-5728(00)00227-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
139
Domingo E. Viruses at the edge of adaptation. Virology 2000;270:251-3. [PMID: 10792982 DOI: 10.1006/viro.2000.0320] [Citation(s) in RCA: 132] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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