151
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Jing W, Liu Q, Wang M, Zhang X, Chen J, Sui G, Wang L. A method for particulate matter 2.5 (PM 2.5) biotoxicity assay using luminescent bacterium. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 170:796-803. [PMID: 30605872 DOI: 10.1016/j.ecoenv.2018.12.030] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 12/04/2018] [Accepted: 12/11/2018] [Indexed: 06/09/2023]
Abstract
The ability to analyze biotoxicity of atmospheric pollution plays an important role in public health. It provides the potential to directly analyze the health information of at-risk individuals. Although air quality standards have received significant attention in many countries, the potential for better biotoxicity assessment has remained largely unexplored. Here we propose a method using one kind of luminescent bacterium Photobacterium phosphereum to detect the biotoxicity of atmospheric particulate matter ≤ 2.5 µm (PM2.5). Combined with the results of air pollution data of the year 2013-2014, this method has been proven to have good biotoxicity detection performance, and can evaluate the severity of at least 85% of PM2.5 related biotoxicity in Shanghai during this time period. Based on an established algorithm of this detection system, the biotoxicity of twelve PM2.5 real samples (collected over a month) were tested and divided into different biotoxicity levels. It allows an effective evaluation of biotoxicity of PM2.5 due to the quick and sensitive response of bioluminescence to the concentration of toxic components, which provides a valuable reference to evaluate the biotoxicity of PM2.5. This established method can be easily applied to the analysis and evaluation of any other PM2.5 samples assay by following the steps.
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Affiliation(s)
- Wenwen Jing
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China; Biodesign Center for Biosensors and Bioelectronics, Arizona State University, Tempe, AZ 85287, United States
| | - Qi Liu
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China
| | - Mingyi Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China
| | - Xinlian Zhang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China
| | - Jianmin Chen
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China
| | - Guodong Sui
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China; Institute of Biomedical Science, Fudan University, 220 Handan Road, Shanghai 200433, PR China.
| | - Lin Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science & Engineering, Fudan University, 220 Handan Road, Shanghai 200433, PR China.
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152
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Yan Y, Wang S, Xie F, Fang X, Zhang YM, Zhang SXA. Firefly-Inspired Approach to Develop New Chemiluminescence Materials. iScience 2019; 13:478-487. [PMID: 30880044 PMCID: PMC6441873 DOI: 10.1016/j.isci.2019.02.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 11/26/2018] [Accepted: 02/04/2019] [Indexed: 11/28/2022] Open
Abstract
Bioluminescence, wherein marine and terrestrial organisms chemically produce light for communication, is a burgeoning area of research. Herein, we demonstrate a new series of artificial chemiluminescent compounds inspired by the enol-degradation reaction of natural bioluminescent molecules, luciferins. Based on systematic optical experiments, isotope labeling, and theoretical calculations, the chemiluminescent mechanism of these new materials and the relationship of enol-degradation reaction and chemiluminescence are fully discussed. The color and efficiency of the artificial chemiluminescent materials can be easily adjusted, and blue (486 nm), yellow (565 nm), and near-infrared (756 nm) luminescence can thus be obtained. The findings and in-depth understanding herein may accelerate the development of bio/chemiluminescent materials for analytical applications and non-invasive bioluminescence imaging.
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Affiliation(s)
- Yuxing Yan
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, China; College of Chemistry, Jilin University, Changchun, Jilin 130012, China
| | - Shuo Wang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, China; College of Chemistry, Jilin University, Changchun, Jilin 130012, China
| | - Fuli Xie
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, China; College of Chemistry, Jilin University, Changchun, Jilin 130012, China
| | - Xiaofeng Fang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, China; College of Chemistry, Jilin University, Changchun, Jilin 130012, China
| | - Yu-Mo Zhang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, China; College of Chemistry, Jilin University, Changchun, Jilin 130012, China.
| | - Sean Xiao-An Zhang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, China; College of Chemistry, Jilin University, Changchun, Jilin 130012, China
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153
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Ke B, Chen H, Ma L, Zingales S, Gong D, Hu D, Du L, Li M. Visualization of mercury(ii) accumulation in vivo using bioluminescence imaging with a highly selective probe. Org Biomol Chem 2019; 16:2388-2392. [PMID: 29560483 DOI: 10.1039/c8ob00398j] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Mercury is a highly toxic environmental pollutant that negatively affects human health. Thus, an in vivo method for noninvasive imaging of mercury(ii) and visualization of its accumulation within living systems would be advantageous. Herein, we describe a reaction-based bioluminescent probe for detection of mercury(ii) in vitro and accumulation in vivo. The application of this probe would help to shed light on the intricate contributions of mercury(ii) to various physiological and pathological processes.
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Affiliation(s)
- Bowen Ke
- Laboratory of Anaesthesiology & Critical Care Medicine, West China Brain Research Center, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China
| | - Hui Chen
- Laboratory of Anaesthesiology & Critical Care Medicine, West China Brain Research Center, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China and Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (MOE), School of Pharmacy, Shandong University, Jinan, Shandong 250012, China.
| | - Lin Ma
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (MOE), School of Pharmacy, Shandong University, Jinan, Shandong 250012, China.
| | - Sarah Zingales
- Department of Chemistry and Physics, Armstrong State University, Savannah, GA 31419, USA
| | - Deying Gong
- Laboratory of Anaesthesiology & Critical Care Medicine, West China Brain Research Center, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China
| | - Die Hu
- Laboratory of Anaesthesiology & Critical Care Medicine, West China Brain Research Center, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China
| | - Lupei Du
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (MOE), School of Pharmacy, Shandong University, Jinan, Shandong 250012, China.
| | - Minyong Li
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (MOE), School of Pharmacy, Shandong University, Jinan, Shandong 250012, China.
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154
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Fleiss A, Sarkisyan KS. A brief review of bioluminescent systems (2019). Curr Genet 2019; 65:877-882. [PMID: 30850867 PMCID: PMC6620254 DOI: 10.1007/s00294-019-00951-5] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Revised: 02/27/2019] [Accepted: 03/01/2019] [Indexed: 12/19/2022]
Abstract
Despite being widely used in reporter technologies, bioluminescent systems are largely understudied. Of at least forty different bioluminescent systems thought to exist in nature, molecular components of only seven light-emitting reactions are known, and the full biochemical pathway leading to light emission is only understood for two of them. Here, we provide a succinct overview of currently known bioluminescent systems highlighting available tools for research and discussing future applications.
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Affiliation(s)
- Aubin Fleiss
- Synthetic Biology Group, MRC London Institute of Medical Sciences, London, UK.,Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London, UK
| | - Karen S Sarkisyan
- Synthetic Biology Group, MRC London Institute of Medical Sciences, London, UK. .,Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London, UK. .,Planta LLC, Bolshoi Boulevard, 42 Str 1, Office 335, Moscow, 121205, Russia. .,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Miklukho-Maklaya, 16/10, Moscow, 117997, Russia.
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155
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Zlobovskaya OA, Shirmanova MV, Kovaleva TF, Sarkisyan KS, Zagaynova EV, Lukyanov KA. Sensors for Caspase Activities. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2019. [DOI: 10.1134/s1068162018060109] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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156
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Markova SV, Larionova MD, Vysotski ES. Shining Light on the Secreted Luciferases of Marine Copepods: Current Knowledge and Applications. Photochem Photobiol 2019; 95:705-721. [PMID: 30585639 DOI: 10.1111/php.13077] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2018] [Accepted: 12/18/2018] [Indexed: 01/02/2023]
Abstract
Copepod luciferases-a family of small secretory proteins of 18.4-24.3 kDa, including a signal peptide-are responsible for bright secreted bioluminescence of some marine copepods. The copepod luciferases use coelenterazine as a substrate to produce blue light in a simple oxidation reaction without any additional cofactors. They do not share sequence or structural similarity with other identified bioluminescent proteins including coelenterazine-dependent Renilla and Oplophorus luciferases. The small size, strong luminescence activity and high stability, including thermostability, make secreted copepod luciferases very attractive candidates as reporter proteins which are particularly useful for nondisruptive reporter assays and for high-throughput format. The most known and extensively investigated representatives of this family are the first cloned GpLuc and MLuc luciferases from copepods Gaussia princeps and Metridia longa, respectively. Immediately after cloning, these homologous luciferases were successfully applied as bioluminescent reporters in vivo and in vitro, and since then, the scope of their applications continues to grow. This review is an attempt to systemize and critically evaluate the data scattered through numerous articles regarding the main structural features of copepod luciferases, their luminescent and physicochemical properties. We also review the main trends of their application as bioluminescent reporters in cell and molecular biology.
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Affiliation(s)
- Svetlana V Markova
- Photobiology Laboratory, Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Krasnoyarsk, Russia.,Siberian Federal University, Krasnoyarsk, Russia.,N.N. Blokhin National Medical Research Center of Oncology, Ministry of Health of Russia, Moscow, Russia
| | - Marina D Larionova
- Photobiology Laboratory, Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Krasnoyarsk, Russia.,N.N. Blokhin National Medical Research Center of Oncology, Ministry of Health of Russia, Moscow, Russia
| | - Eugene S Vysotski
- Photobiology Laboratory, Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Krasnoyarsk, Russia.,N.N. Blokhin National Medical Research Center of Oncology, Ministry of Health of Russia, Moscow, Russia
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157
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Liu JM, Zhao N, Wang ZH, Lv SW, Li CY, Wang S. In-Taken Labeling and in Vivo Tracing Foodborne Probiotics via DNA-Encapsulated Persistent Luminescence Nanoprobe Assisted Autofluorescence-Free Bioimaging. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:514-519. [PMID: 30563334 DOI: 10.1021/acs.jafc.8b05937] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
An in vivo probing strategy that can real-time and in situ trace target probiotics inside the living body is herein proposed by employing plasmid-like DNA as in-taken assistance, persistent luminescence nanophosphors (PLNPs) as optical labeling, and background-free fluorescence bioimaging as signal readout. PLNPs with superlong afterglow and excellent biocompatibility and stability were surface-modified by DNA molecules with a specific sequence, which greatly promoted the nanoparticle penetration into the bacteria and facilitated the in vivo bioimaging with high sensitivity and signal-to-noise ratio. Compared with the previous surface-labeling strategy by antibody recognition, the in-taken optical labeling demonstrated improved stability, and reached ideal results of real-time and in situ monitoring the in vivo behaviors of target probiotics, supporting the further development of in vivo investigation methodology for foodborne probiotics. Moreover, such a strategy offers a promising platform that leverage nanoscience to food nutrition as well as food-safety research, aiming to collect more accurate and fresh information from the living body.
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Affiliation(s)
- Jing-Min Liu
- Tianjin Key Laboratory of Food Science and Health, School of Medicine , Nankai University , No.94 Weijin Road , Tianjin 300071 , China
| | - Ning Zhao
- Tianjin Key Laboratory of Food Science and Health, School of Medicine , Nankai University , No.94 Weijin Road , Tianjin 300071 , China
| | - Zhi-Hao Wang
- Tianjin Key Laboratory of Food Science and Health, School of Medicine , Nankai University , No.94 Weijin Road , Tianjin 300071 , China
| | - Shi-Wen Lv
- Tianjin Key Laboratory of Food Science and Health, School of Medicine , Nankai University , No.94 Weijin Road , Tianjin 300071 , China
| | - Chun-Yang Li
- Tianjin Key Laboratory of Food Science and Health, School of Medicine , Nankai University , No.94 Weijin Road , Tianjin 300071 , China
| | - Shuo Wang
- Tianjin Key Laboratory of Food Science and Health, School of Medicine , Nankai University , No.94 Weijin Road , Tianjin 300071 , China
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158
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Coutant EP, Goyard S, Hervin V, Gagnot G, Baatallah R, Jacob Y, Rose T, Janin YL. Gram-scale synthesis of luciferins derived from coelenterazine and original insights into their bioluminescence properties. Org Biomol Chem 2019; 17:3709-3713. [DOI: 10.1039/c9ob00459a] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An original three component synthetic access to coelenterazine and analogues can lead to grams of marine luciferins which are extensively used in bioluminescence-based assays.
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Affiliation(s)
- Eloi P. Coutant
- Unité de Chimie et Biocatalyse
- Institut Pasteur
- UMR 3523
- CNRS
- 75724 Paris cedex 15
| | - Sophie Goyard
- Center for Innovation and Technological Research
- Institut Pasteur
- 75724 Paris cedex 15
- France
| | - Vincent Hervin
- Unité de Chimie et Biocatalyse
- Institut Pasteur
- UMR 3523
- CNRS
- 75724 Paris cedex 15
| | - Glwadys Gagnot
- Unité de Chimie et Biocatalyse
- Institut Pasteur
- UMR 3523
- CNRS
- 75724 Paris cedex 15
| | - Racha Baatallah
- Unité de Chimie et Biocatalyse
- Institut Pasteur
- UMR 3523
- CNRS
- 75724 Paris cedex 15
| | - Yves Jacob
- Unité de Génétique Moléculaire des Virus à ARN
- Institut Pasteur
- UMR 3569
- CNRS
- 75724 Paris cedex 15
| | - Thierry Rose
- Center for Innovation and Technological Research
- Institut Pasteur
- 75724 Paris cedex 15
- France
| | - Yves L. Janin
- Unité de Chimie et Biocatalyse
- Institut Pasteur
- UMR 3523
- CNRS
- 75724 Paris cedex 15
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159
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Ávila-Flores A, Arranz-Nicolás J, Mérida I. Transcriptional Activity of FOXO Transcription Factors Measured by Luciferase Assays. Methods Mol Biol 2019; 1890:91-102. [PMID: 30414147 DOI: 10.1007/978-1-4939-8900-3_8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The Forkhead box O (FOXO) family of transcription factors translates environmental cues into gene expression. FOXO factors are crucial for the maintenance of cell homeostasis, with important roles in cell fate decisions and differentiation. Identification of FOXO target genes requires strict validation by several methods. Luciferase-based reporters are a valuable starting point for determining the transcription-promoting capacity of potential FOXO-binding sites in candidate genes. Luciferase, an enzyme found in bioluminescent organisms catalyzes oxidation of luciferin to produce oxyluciferin together with light, which can be easily detected and measured with a luminometer. Due to their many advantages, transcriptional assays based on luciferase activity are widely used; they are easy, highly reproducible, and very sensitive. Continued improvements in luciferase-based vectors and measurement reagents confer considerable versatility. Luciferase-based reporters are also a reliable approach in the search for unknown components in the signaling pathways that control FOXO factor activity.We previously reported that FOXO transcription factors control expression of the enzyme diacylglycerol kinase α (DGKα) in T cells. DGKα consumes diacylglycerol, a lipid that activates several mitogenic pathways. Here, we describe the use of a luciferase-based promoter bearing the FOXO-binding sites of the DGKα gene to explore the relationship between the expression of this enzyme and stress conditions in NIH3T3 mouse fibroblasts. Our data support a role for FOXO factors in promoting high DGKα levels in conditions of growth factor deprivation. DGKα regulation by FOXO factors correlates with the reported alterations in DGKα expression during cell transformation and cancer progression.
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Affiliation(s)
- Antonia Ávila-Flores
- Department of Immunology and Oncology, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.
| | - Javier Arranz-Nicolás
- Department of Immunology and Oncology, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
| | - Isabel Mérida
- Department of Immunology and Oncology, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
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160
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Osipova ZM, Shcheglov AS, Yampolsky IV. Bioluminescent imaging: new opportunities. BULLETIN OF RUSSIAN STATE MEDICAL UNIVERSITY 2018. [DOI: 10.24075/brsmu.2018.063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Modern biomedical research technologies actively use bioimaging for studying cells, tissues and whole organisms. Multicolor bioimaging is applied when simultaneous observation of different events at the molecular and cellular level is needed. Bioluminescent imaging methods are the most sensitive, however, their use for multicolor labeling is complicated due to the insufficient number of available uciferin-luciferase pairs. Having a number of advantages compared to previously studied bioluminescent systems, the new bioluminescence systems of higher fungi and marine polychaete Odontosyllis could become a useful expansion of the bioimaging toolbox.
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Affiliation(s)
- ZM Osipova
- Biomolecular Chemistry Department, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow; Laboratory of Natural Compounds Chemistry, Pirogov Russian National Research Medical University, Moscow
| | - AS Shcheglov
- Biomolecular Chemistry Department, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow; Laboratory of Natural Compounds Chemistry, Pirogov Russian National Research Medical University, Moscow
| | - IV Yampolsky
- Biomolecular Chemistry Department, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow; Laboratory of Natural Compounds Chemistry, Pirogov Russian National Research Medical University, Moscow
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161
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Magalhães CM, Esteves da Silva JCG, Pinto da Silva L. Comparative study of the chemiluminescence of coelenterazine, coelenterazine-e and Cypridina luciferin with an experimental and theoretical approach. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2018; 190:21-31. [PMID: 30453161 DOI: 10.1016/j.jphotobiol.2018.11.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Revised: 11/05/2018] [Accepted: 11/12/2018] [Indexed: 01/22/2023]
Abstract
Imidazopyrazinone is a typical scaffold present in marine bioluminescence, in which thermal energy is converted into excitation energy in an enzyme-catalyzed reaction. In fact, the imidazopyrazinone scaffold is a common link among organisms of eight phyla. The characterization of the light emission mechanism is essential for the development of future applications in bioimaging, bioanalysis and biomedicine. Herein, we have studied the chemiluminescent reaction of three commercially-available imidazopyrazinones (Cypridina luciferin, Coelenterazine and Coelenterazine-e) in several aprotic solvents at different pH. We have found that at acidic pH only DMF and DMSO consistently present high light emission, while chemiluminescence in other solvents is negligible. We have attributed this to the inability of most solvents to allow for the deprotonation of the imidazopyrazinone core, thereby preventing the oxygenation step. We have also observed that increasing the pH of the solution leads to the inhibition of chemiluminescence, which we attributed to the deprotonation of the dioxetanone intermediate, as the neutral species is the one associated with efficient chemiexcitation. We have also observed that the pKa of dioxetanone increases with the dielectric constant of the medium. Finally, our work indicated that the chemiexcitation yield increases with increasing polarity of the medium, due to a reduced transition dipole moment associated with S0 → S1 transition.
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Affiliation(s)
- Carla M Magalhães
- Chemistry Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal; Master in Oncology, Institute of Biomedical Sciences Abel Salazar - University of Porto (ICBAS-UP), Porto, Portugal
| | - Joaquim C G Esteves da Silva
- LACOMEPHI, GreenUP, Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal; Chemistry Research Unit (CIQUP), Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Luís Pinto da Silva
- Chemistry Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal; LACOMEPHI, GreenUP, Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal.
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162
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Kandarakov OF, Bruter AV, Belyavsky AV. Modulation of Luciferase Production in Melanoma Cells in vitro. Mol Biol 2018. [DOI: 10.1134/s0026893318050084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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163
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Li Y, Yang P, Lei N, Ma Y, Ji Y, Zhu C, Wu Y. Assembly of DNA-Templated Bioluminescent Modules for Amplified Detection of Protein Biomarkers. Anal Chem 2018; 90:11495-11502. [DOI: 10.1021/acs.analchem.8b02734] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
| | | | | | | | - Yaoting Ji
- Key Lab for Oral Biomedical Engineering of Ministry of Education, School and Hospital of Stomatology, Wuhan University, Wuhan, 430079, P. R. China
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164
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Inhibition and stimulation of the human breast cancer resistance protein as in vitro predictor of drug-drug interactions of drugs of abuse. Arch Toxicol 2018; 92:2875-2884. [PMID: 30083819 DOI: 10.1007/s00204-018-2276-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 07/30/2018] [Indexed: 02/07/2023]
Abstract
Transporter-mediated drug-drug interactions (DDI) may induce adverse clinical events. As drugs of abuse (DOA) are marketed without preclinical safety studies, only very limited information about interplay with membrane transporters are available. Therefore, 13 DOA of various classes were tested for their in vitro affinity to the human breast cancer resistance protein (hBCRP), an important efflux transporter. As adenosine 5'-triphosphate (ATP) hydrolysis is crucial for hBCRP activity, adenosine 5'-diphosphate (ADP) formation was measured and used as in vitro marker for hBCRP ATPase activity. ADP quantification was performed by hydrophilic interaction liquid chromatography coupled to high-resolution tandem mass spectrometry and its amount in test compound incubations was compared to that in reference incubations using the hBCRP substrate sulfasalazine or the hBCRP inhibitor orthovanadate. If DOA caused stimulation or inhibition, further investigations such as Michaelis-Menten kinetic modeling or IC50 value determination were conducted. Among the tested DOA, seven compounds showed statistically significant hBCRP ATPase stimulation. The entactogen 3,4-BDB and the plant alkaloid mitragynine were identified as strongest stimulators. Their affinity to the hBCRP ATPase was lower than that of sulfasalazine but comparable to that of rosuvastatin, another hBCRP model substrate. Five DOA showed statistically significant hBCRP ATPase inhibition. Determination of IC50 values identified the synthetic cannabinoid receptor agonists JWH-200 and WIN 55,212-2 as the strongest inhibitors comparable to orthovanadate. The present study clearly demonstrated that tested DOA show in part high affinities to the hBCRP within the range of model substrates or inhibitors. Thus, there is a risk of hBCRP-mediated DDI, which needs to be considered in clinical settings.
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165
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Yao Z, Zhang BS, Prescher JA. Advances in bioluminescence imaging: new probes from old recipes. Curr Opin Chem Biol 2018; 45:148-156. [PMID: 29879594 PMCID: PMC6076869 DOI: 10.1016/j.cbpa.2018.05.009] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Revised: 04/25/2018] [Accepted: 05/04/2018] [Indexed: 11/18/2022]
Abstract
Bioluminescent probes are powerful tools for visualizing biology in live tissues and whole animals. Recent years have seen a surge in the number of new luciferases, luciferins, and related tools available for bioluminescence imaging. Many were crafted using classic methods of optical probe design and engineering. Here we highlight recent advances in bioluminescent tool discovery and development, along with applications of the probes in cells, tissues, and organisms. Collectively, these tools are improving in vivo imaging capabilities and bolstering new research directions.
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Affiliation(s)
- Zi Yao
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA
| | - Brendan S Zhang
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA
| | - Jennifer A Prescher
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA; Department of Molecular Biology & Biochemistry, University of California, Irvine, Irvine, CA 92697, USA; Department of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA 92697, USA.
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166
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Zhang C, Cheng L, Dong G, Han G, Yang X, Tang C, Li X, Zhou Y, Du L, Li M. Novel photoactivatable substrates for Renilla luciferase imaging in vitro and in vivo. Org Biomol Chem 2018; 16:4789-4792. [PMID: 29926875 PMCID: PMC6165844 DOI: 10.1039/c8ob01192c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
To develop a photoactivatable bioluminescence imaging technique, a set of high and efficient photoactivatable substrates for Renilla luciferase has been well designed and synthesized. Surprisingly, all of them could release the free luciferin that presented robust bioluminescent signals ex vivo and in living animals after UV irradiation at 365 nm.
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Affiliation(s)
- Chaochao Zhang
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Lin Cheng
- Department of Ultrasound, Qilu Hospital of Shandong University, Jinan, Shandong 250012, China
| | - Gaopan Dong
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Guangxi Han
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Xingye Yang
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Chunchao Tang
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Xiang Li
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Yubin Zhou
- Center for Translational Cancer Research, Institute of Biosciences and Technology, College of Medicine, Texas A&M University, Houston, TX 77030, USA
| | - Lupei Du
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
| | - Minyong Li
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology, School of Pharmacy, Shandong University, Jinan, Shandong 250012, China, ; Fax: +86-531-8838-2076; Tel: +86-531-8838-2076
- Shenzhen Research Institute, Shandong University, Shenzhen, Guangdong 518057, China
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167
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Cheng YY, Liu YJ. Theoretical Development of Near-Infrared Bioluminescent Systems. Chemistry 2018; 24:9340-9352. [PMID: 29710377 DOI: 10.1002/chem.201800416] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Indexed: 12/16/2022]
Abstract
The luciferin/luciferase system of the firefly has been used in bioluminescent imaging to monitor biological processes. In order to enhance the efficiency and expand the application range, some efforts have been made to tune the light emission, especially the effort to obtain NIR light. However, those case-by-case studies have not together revealed the nature and mechanism of the color tuning. In this paper, we theoretically investigated the fluorescence of all kinds of typical oxyluciferin analogues. The present systematical modifications of both oxyluciferin and luciferase indicate that the essential factor affecting the emission color is the charge distribution (or the electric dipole moment) on the oxyluciferin, which impacts on the charge transfer to form the light emitter and, subsequently, influence the strength and wavelength of the emission light. More negative charge distributed on the "thiazolone moiety" of the oxyluciferin or its analogues leads to a redshift. Based on this conclusion, we theoretically designed optimal pairs of luciferin analogue and luciferase for emitting NIR light, which could inspire new synthetic procedures and practical applications.
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Affiliation(s)
- Yuan-Yuan Cheng
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing, 100875, P. R. China
| | - Ya-Jun Liu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing, 100875, P. R. China
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168
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Berraud-Pache R, Lindh R, Navizet I. QM/MM Study of the Formation of the Dioxetanone Ring in Fireflies through a Superoxide Ion. J Phys Chem B 2018; 122:5173-5182. [PMID: 29659277 DOI: 10.1021/acs.jpcb.8b00642] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The bioluminescence emission from fireflies is an astounding tool to mark and view cells. However, the bioluminescent mechanism is not completely deciphered, limiting the comprehension of key processes. We use a theoretical approach to study for the first time the arrival of a dioxygen molecule inside the fireflies protein and one path of the formation of the dioxetanone ring, the high-energy intermediate precursor of the bioluminescence. To describe this reaction step, a joint approach combining classical molecular dynamics (MD) simulations and hybrid quantum mechanics/molecular mechanics (QM/MM) calculations is used. The formation of the dioxetanone ring has been studied for both singlet and triplet states with the help of MS-CASPT2 calculations. We also emphasize the role played by the proteinic environment in the formation of the dioxetanone ring. The results obtained shed some light on an important reaction step and give new insights concerning the bioluminescence in fireflies.
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Affiliation(s)
- Romain Berraud-Pache
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Echelle, MSME, UMR 8208 CNRS , UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Roland Lindh
- Department of Chemistry - Ångström , University of Uppsala , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Isabelle Navizet
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Echelle, MSME, UMR 8208 CNRS , UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
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169
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Li J, Guo Z, Sato T, Yuan B, Ma Y, Qian D, Zhong J, Jin M, Huang P, Che L, Wang Y, Lei Y, Liu C. Optimized application of the secreted Nano-luciferase reporter system using an affinity purification strategy. PLoS One 2018; 13:e0196617. [PMID: 29719001 PMCID: PMC5931628 DOI: 10.1371/journal.pone.0196617] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Accepted: 04/15/2018] [Indexed: 12/30/2022] Open
Abstract
Secreted Nano-luciferase (secNluc) is a newly engineered secreted luciferase that possesses advantages of high structural stability, long half-life, and glow-type kinetics together with high light emission intensity, and thus would become one of the most valuable tools for bioluminescence assays. However, like other secreted luciferases, secNluc has to mix with the components in the conditioned medium surrounding test cells, or in the biological samples such as blood or urine after being secreted. These components may interfere with secNluc-catalyzed bioluminescence reactions and thus limit the application of the secNluc reporter system. In this study, we first examined the effects of three factors, pH, serum and residual reagents, on secNluc-catalyzed bioluminescence reactions, finding that these factors could interfere with bioluminescence reactions and result in background signal. To resolve these problems, we applied a simple affinity purification strategy in which secNluc was fused with a FLAG-tag, and anti-FLAG magnetic beads were used to catch and transfer the fusion protein to PBST, an optimal buffer for secNluc-catalyzed bioluminescence reactions that was identified in this study. The results indicated that this strategy could not only negate the interferences from serum or residual reagents and enhance the stability of light emission but also greatly increase signal intensity through enzyme enrichment. This strategy may contribute to biomedical studies that utilize secNluc and other secreted luciferases, especially those requiring superior sensitivity, low background noise and high reproducibility.
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Affiliation(s)
- JingZhe Li
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
- Department of Biochemistry, School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, Japan
| | - ZhiLan Guo
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
| | - Takashi Sato
- Department of Biochemistry, School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, Japan
| | - Bo Yuan
- Department of Applied Biochemistry, School of Pharmacy, Tokyo University of Pharmacy & Life Sciences, Hachioji, Tokyo, Japan
| | - YanYan Ma
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
| | - Dan Qian
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
| | - JuYing Zhong
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
| | - MengMeng Jin
- Department of Geriatric Endocrinology, The General Hospital of Chinese People’s Liberation Army, Beijing, China
| | - Peng Huang
- Department of Orthopaedics, The General Hospital of Chinese People’s Liberation Army, Beijing, China
| | - LuYang Che
- Department of Orthopaedics, The General Hospital of Chinese People’s Liberation Army, Beijing, China
| | - Yi Wang
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yan Lei
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
- * E-mail: (CZL); (YL)
| | - ChangZhen Liu
- Beijing Key Laboratory of Research of Chinese Medicine on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, China
- * E-mail: (CZL); (YL)
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170
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Shakhmin A, Hall MP, Machleidt T, Walker JR, Wood KV, Kirkland TA. Coelenterazine analogues emit red-shifted bioluminescence with NanoLuc. Org Biomol Chem 2018; 15:8559-8567. [PMID: 28972606 DOI: 10.1039/c7ob01985h] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
We report the synthesis and characterization of novel coelenterazine analogues that demonstrate a red-shift in their bioluminescent emission with NanoLuc luciferase. These coelenterazines can be tuned to shift the bioluminescent emission from blue light in the native system. In particular, direct attachment of an aryl moiety to the imidazopyrazinone core of furimazine at the C8 position provides a significant red-shift while maintaining reasonable light output. In addition, modification of the C6 aryl moiety provided additive red-shifts, and by combining the most promising modifications we report a coelenterazine with a maximum emission near 600 nm with NanoLuc. Finally, we show that this new bioluminescent system is capable of efficient BRET to far-red fluorophores. We anticipate these new principles of NanoLuc substrate design will impact applications that depend on shifting the colour of emission to the red, most notably in vivo bioluminescent imaging.
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Affiliation(s)
- Anton Shakhmin
- Promega Biosciences LLC, 277 Granada Dr., San Luis Obispo, CA 93401, USA.
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171
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Danzer SC. Finding Your Inner Light: Using Bioluminescence to Control Seizures. Epilepsy Curr 2018; 18:182-183. [PMID: 29950944 PMCID: PMC6017686 DOI: 10.5698/1535-7597.18.3.182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2024] Open
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172
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Zhao X, Lv G, Peng Y, Liu Q, Li X, Wang S, Li K, Qiu L, Lin J. Targeted Delivery of an Activatable Fluorescent Probe for the Detection of Furin Activity in Living Cells. Chembiochem 2018; 19:1060-1065. [DOI: 10.1002/cbic.201800015] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Xueyu Zhao
- School of Chemical and Material Engineering; Jiangnan University; Wuxi 214122 China
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Gaochao Lv
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Ying Peng
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Qingzhu Liu
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Xi Li
- School of Chemical and Material Engineering; Jiangnan University; Wuxi 214122 China
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Shanshan Wang
- School of Chemical and Material Engineering; Jiangnan University; Wuxi 214122 China
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Ke Li
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Ling Qiu
- School of Chemical and Material Engineering; Jiangnan University; Wuxi 214122 China
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
| | - Jianguo Lin
- Key Laboratory of Nuclear Medicine, Ministry of Health; Jiangsu Key Laboratory of Molecular Nuclear Medicine; Jiangsu Institute of Nuclear Medicine; Wuxi 214063 China
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173
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Kovács AK, Hegyes P, Szebeni GJ, Nagy LI, Puskás LG, Tóth GK. Synthesis of N-peptide-6-amino-D-luciferin Conjugates. Front Chem 2018; 6:120. [PMID: 29725588 PMCID: PMC5917020 DOI: 10.3389/fchem.2018.00120] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Accepted: 03/30/2018] [Indexed: 12/23/2022] Open
Abstract
A general strategy for the synthesis of N-peptide-6-amino-D-luciferin conjugates has been developed. The applicability of the strategy was demonstrated with the preparation of a known substrate, N-Z-Asp-Glu-Val-Asp-6-amino-D-luciferin (N-Z-DEVD-aLuc). N-Z-DEVD-aLuc was obtained via a hybrid liquid/solid phase synthesis method, in which the appropriately protected C-terminal amino acid was coupled to 6-amino-2-cyanobenzothiazole and the resulting conjugate was reacted with D-cysteine in order to get the protected amino acid-6-amino-D-luciferin conjugate, which was then attached to resin. The resulting loaded resin was used for the solid-phase synthesis of the desired N-peptide-6-amino-D-luciferin conjugate without difficulties, which was then attested with NMR spectroscopy and LC-MS, and successfully tested in a bioluminescent system.
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Affiliation(s)
- Anita K Kovács
- Department of Medical Chemistry, University of Szeged, Szeged, Hungary.,Avidin Ltd., Szeged, Hungary
| | | | - Gábor J Szebeni
- Avidin Ltd., Szeged, Hungary.,Department of Genetics, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary
| | | | - László G Puskás
- Avidin Ltd., Szeged, Hungary.,Department of Genetics, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary
| | - Gábor K Tóth
- Department of Medical Chemistry, University of Szeged, Szeged, Hungary
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174
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Pozzo T, Akter F, Nomura Y, Louie AY, Yokobayashi Y. Firefly Luciferase Mutant with Enhanced Activity and Thermostability. ACS OMEGA 2018; 3:2628-2633. [PMID: 30023842 PMCID: PMC6044891 DOI: 10.1021/acsomega.7b02068] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2017] [Accepted: 02/19/2018] [Indexed: 05/13/2023]
Abstract
The luciferase isolated from the firefly Photinus pyralis (Ppy) catalyzes a two-step reaction that results in the oxidation of d-luciferin accompanied by emission of yellow-green light with a peak at 560 nm. Among many applications, Ppy luciferase has been used extensively as a reporter gene in living cells and organisms. However, some biological applications are limited by the low stability of the luciferase and limited intracellular luciferin concentration. To address these challenges, efforts to protein engineer Ppy luciferase have resulted in a number of mutants with improved properties such as thermostability, pH tolerance, and catalytic turn over. In this work, we combined amino acid mutations that were shown to enhance the enzyme's thermostability (Mutant E) with those reported to enhance catalytic activity (LGR). The resulting mutant (YY5) contained eight amino acid changes from the wild-type luciferase and exhibited both improved thermostability and brighter luminescence at low luciferin concentrations. Therefore, YY5 may be useful for reporter gene applications.
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Affiliation(s)
- Tania Pozzo
- Department
of Biomedical Engineering, University of
California at Davis, One Shields Avenue, Davis, California 95616, United States
| | - Farhima Akter
- Department
of Biomedical Engineering, University of
California at Davis, One Shields Avenue, Davis, California 95616, United States
| | - Yoko Nomura
- Nucleic
Acid Chemistry and Engineering Unit, Okinawa
Institute of Science and Technology Graduate University, Onna, Okinawa 904 0495, Japan
| | - Angelique Y. Louie
- Department
of Biomedical Engineering, University of
California at Davis, One Shields Avenue, Davis, California 95616, United States
| | - Yohei Yokobayashi
- Nucleic
Acid Chemistry and Engineering Unit, Okinawa
Institute of Science and Technology Graduate University, Onna, Okinawa 904 0495, Japan
- E-mail:
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175
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García-Iriepa C, Gosset P, Berraud-Pache R, Zemmouche M, Taupier G, Dorkenoo KD, Didier P, Léonard J, Ferré N, Navizet I. Simulation and Analysis of the Spectroscopic Properties of Oxyluciferin and Its Analogues in Water. J Chem Theory Comput 2018; 14:2117-2126. [DOI: 10.1021/acs.jctc.7b01240] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Cristina García-Iriepa
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM, 5 bd Descartes, 77454 Marne-la-Vallée, France
| | - Pauline Gosset
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg UMR 7504 and Labex NIE, 67034 Strasbourg, France
- Université de Strasbourg, CNRS, Laboratoire de Bioimagerie et Pathologies UMR 7021, 67034 Strasbourg, France
| | - Romain Berraud-Pache
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM, 5 bd Descartes, 77454 Marne-la-Vallée, France
| | - Madjid Zemmouche
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM, 5 bd Descartes, 77454 Marne-la-Vallée, France
| | - Grégory Taupier
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg UMR 7504 and Labex NIE, 67034 Strasbourg, France
| | - Kokou Dodzi Dorkenoo
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg UMR 7504 and Labex NIE, 67034 Strasbourg, France
| | - Pascal Didier
- Université de Strasbourg, CNRS, Laboratoire de Bioimagerie et Pathologies UMR 7021, 67034 Strasbourg, France
| | - Jérémie Léonard
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg UMR 7504 and Labex NIE, 67034 Strasbourg, France
| | - Nicolas Ferré
- Aix-Marseille Univ, CNRS, Institut de Chimie Radicalaire, 13013 Marseille, France
| | - Isabelle Navizet
- Université Paris-Est, Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM, 5 bd Descartes, 77454 Marne-la-Vallée, France
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176
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Osipova Z, Shcheglov A, Yampolsky I. A bioluminescent system of fungi: prospects for application in medical research. BULLETIN OF RUSSIAN STATE MEDICAL UNIVERSITY 2018. [DOI: 10.24075/brsmu.2018.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Bioluminescence is chemical oxidation of a small luciferin molecule by air catalyzed by luciferase and accompanied by the emission of photons in the visible spectrum. This reaction is used in bioluminescent bioimaging, the method for the visualization of organism’s interior. Bioimaging is a popular tool used in medical research. However, it has an unfortunate drawback: it requires introduction of external luciferin to the system before every experiment. In this work we discuss a possibility of developing an autonomous luminescent system in eukaryotes based on the bioluminescent system of higher fungi.
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Affiliation(s)
- Z.M. Osipova
- Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia
| | - A.S. Shcheglov
- Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia
| | - I.V. Yampolsky
- Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia
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177
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Zhang BS, Jones KA, McCutcheon DC, Prescher JA. Pyridone Luciferins and Mutant Luciferases for Bioluminescence Imaging. Chembiochem 2018; 19:470-477. [PMID: 29384255 PMCID: PMC6163054 DOI: 10.1002/cbic.201700542] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Indexed: 01/24/2023]
Abstract
New applications for bioluminescence imaging require an expanded set of luciferase enzymes and luciferin substrates. Here, we report two novel luciferins for use in vitro and in cells. These molecules comprise regioisomeric pyridone cores that can be accessed from a common synthetic route. The analogues exhibited unique emission spectra with firefly luciferase, although photon intensities remained weak. Enhanced light outputs were achieved by using mutant luciferase enzymes. One of the luciferin-luciferase pairs produced light on par with native probes in live cells. The pyridone analogues and complementary luciferases add to a growing set of designer probes for bioluminescence imaging.
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Affiliation(s)
- Brendan S. Zhang
- Department of Chemistry, University of California, Irvine, 1120 Natural Sciences II, Irvine, CA 92697 (USA),
| | - Krysten A. Jones
- Department of Molecular Biology and Biochemistry, University of California, Irvine, 3205 McGaugh Hall, Irvine, CA 92697 (USA)
| | - David C. McCutcheon
- Department of Chemistry, University of California, Irvine, 1120 Natural Sciences II, Irvine, CA 92697 (USA),
| | - Jennifer A. Prescher
- Department of Chemistry, University of California, Irvine, 1120 Natural Sciences II, Irvine, CA 92697 (USA),
- Department of Molecular Biology and Biochemistry, University of California, Irvine, 3205 McGaugh Hall, Irvine, CA 92697 (USA)
- Department of Pharmaceutical Sciences, University of California, Irvine, 147 Bison Modular, Irvine, CA 92697 (USA)
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178
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Vacher M, Fdez Galván I, Ding BW, Schramm S, Berraud-Pache R, Naumov P, Ferré N, Liu YJ, Navizet I, Roca-Sanjuán D, Baader WJ, Lindh R. Chemi- and Bioluminescence of Cyclic Peroxides. Chem Rev 2018; 118:6927-6974. [PMID: 29493234 DOI: 10.1021/acs.chemrev.7b00649] [Citation(s) in RCA: 226] [Impact Index Per Article: 37.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Bioluminescence is a phenomenon that has fascinated mankind for centuries. Today the phenomenon and its sibling, chemiluminescence, have impacted society with a number of useful applications in fields like analytical chemistry and medicine, just to mention two. In this review, a molecular-orbital perspective is adopted to explain the chemistry behind chemiexcitation in both chemi- and bioluminescence. First, the uncatalyzed thermal dissociation of 1,2-dioxetane is presented and analyzed to explain, for example, the preference for triplet excited product states and increased yield with larger nonreactive substituents. The catalyzed fragmentation reaction and related details are then exemplified with substituted 1,2-dioxetanone species. In particular, the preference for singlet excited product states in that case is explained. The review also examines the diversity of specific solutions both in Nature and in artificial systems and the difficulties in identifying the emitting species and unraveling the color modulation process. The related subject of excited-state chemistry without light absorption is finally discussed. The content of this review should be an inspiration to human design of new molecular systems expressing unique light-emitting properties. An appendix describing the state-of-the-art experimental and theoretical methods used to study the phenomena serves as a complement.
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Affiliation(s)
- Morgane Vacher
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Ignacio Fdez Galván
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Bo-Wen Ding
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry , Beijing Normal University , Beijing 100875 , China
| | - Stefan Schramm
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi , United Arab Emirates
| | - Romain Berraud-Pache
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Panče Naumov
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi , United Arab Emirates
| | | | - Ya-Jun Liu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry , Beijing Normal University , Beijing 100875 , China
| | - Isabelle Navizet
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Daniel Roca-Sanjuán
- Institut de Ciència Molecular , Universitat de València , P.O. Box 22085 , Valencia , Spain
| | - Wilhelm J Baader
- Departamento de Química Fundamental, Instituto de Química , Universidade de São Paulo , Av. Prof. Lineu Prestes, 748 , 05508-000 São Paulo , SP , Brazil
| | - Roland Lindh
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.,Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford Street , Cambridge , Massachusetts 02138 , United States
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179
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Berard A, Kroeker A, McQueen P, Coombs KM. Methods and approaches to disease mechanisms using systems kinomics. Synth Syst Biotechnol 2018; 3:34-43. [PMID: 29911197 PMCID: PMC5884222 DOI: 10.1016/j.synbio.2017.12.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2017] [Revised: 12/04/2017] [Accepted: 12/13/2017] [Indexed: 02/06/2023] Open
Abstract
All cellular functions, ranging from regular cell maintenance and homeostasis, specialized functions specific to cellular types, or generating responses due to external stimulus, are mediated by proteins within the cell. Regulation of these proteins allows the cell to alter its behavior under different circumstances. A major mechanism of protein regulation is utilizing protein kinases and phosphatases; enzymes that catalyze the transfer of phosphates between substrates [1]. Proteins involved in phosphate signaling are well studied and include kinases and phosphatases that catalyze opposing reactions regulating both structure and function of the cell. Kinomics is the study of kinases, phosphatases and their targets, and has been used to study the functional changes in numerous diseases and infectious diseases with aims to delineate the cellular functions affected. Identifying the phosphate signaling pathways changed by certain diseases or infections can lead to novel therapeutic targets. However, a daunting 518 putative protein kinase genes have been identified [2], indicating that this protein family is very large and complex. Identifying which enzymes are specific to a particular disease can be a laborious task. In this review, we will provide information on large-scale systems biology methodologies that allow global screening of the kinome to more efficiently identify which kinase pathways are pertinent for further study.
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Affiliation(s)
- Alicia Berard
- Department of Medical Microbiology, University of Manitoba, Winnipeg, R3E 0J9, Canada
- JC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Canada
| | | | - Peter McQueen
- Department of Medical Microbiology, University of Manitoba, Winnipeg, R3E 0J9, Canada
- JC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Canada
| | - Kevin M. Coombs
- Department of Medical Microbiology, University of Manitoba, Winnipeg, R3E 0J9, Canada
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180
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Li JB, Chen L, Wang Q, Liu HW, Hu XX, Yuan L, Zhang XB. A Bioluminescent Probe for Imaging Endogenous Peroxynitrite in Living Cells and Mice. Anal Chem 2018; 90:4167-4173. [DOI: 10.1021/acs.analchem.8b00198] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Jun-Bin Li
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
| | - Lanlan Chen
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
| | - Qianqian Wang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
| | - Hong-Wen Liu
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
- Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan 411105, P. R. China
| | - Xiao-Xiao Hu
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
| | - Lin Yuan
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
| | - Xiao-Bing Zhang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, College of Life Sciences, Hunan University, Changsha 410082, China
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181
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Iwano S, Sugiyama M, Hama H, Watakabe A, Hasegawa N, Kuchimaru T, Tanaka KZ, Takahashi M, Ishida Y, Hata J, Shimozono S, Namiki K, Fukano T, Kiyama M, Okano H, Kizaka-Kondoh S, McHugh TJ, Yamamori T, Hioki H, Maki S, Miyawaki A. Single-cell bioluminescence imaging of deep tissue in freely moving animals. Science 2018; 359:935-939. [DOI: 10.1126/science.aaq1067] [Citation(s) in RCA: 216] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Accepted: 12/31/2017] [Indexed: 12/26/2022]
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182
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Watkins OC, Sharpe ML, Perry NB, Krause KL. New Zealand glowworm (Arachnocampa luminosa) bioluminescence is produced by a firefly-like luciferase but an entirely new luciferin. Sci Rep 2018; 8:3278. [PMID: 29459729 PMCID: PMC5818473 DOI: 10.1038/s41598-018-21298-w] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Accepted: 02/01/2018] [Indexed: 01/07/2023] Open
Abstract
The New Zealand glowworm, Arachnocampa luminosa, is well-known for displays of blue-green bioluminescence, but details of its bioluminescent chemistry have been elusive. The glowworm is evolutionarily distant from other bioluminescent creatures studied in detail, including the firefly. We have isolated and characterised the molecular components of the glowworm luciferase-luciferin system using chromatography, mass spectrometry and 1H NMR spectroscopy. The purified luciferase enzyme is in the same protein family as firefly luciferase (31% sequence identity). However, the luciferin substrate of this enzyme is produced from xanthurenic acid and tyrosine, and is entirely different to that of the firefly and known luciferins of other glowing creatures. A candidate luciferin structure is proposed, which needs to be confirmed by chemical synthesis and bioluminescence assays. These findings show that luciferases can evolve independently from the same family of enzymes to produce light using structurally different luciferins.
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Affiliation(s)
- Oliver C Watkins
- Department of Biochemistry, University of Otago, Dunedin, New Zealand
- New Zealand Institute for Plant and Food Research Ltd., Department of Chemistry, University of Otago, Dunedin, New Zealand
| | - Miriam L Sharpe
- Department of Biochemistry, University of Otago, Dunedin, New Zealand
| | - Nigel B Perry
- New Zealand Institute for Plant and Food Research Ltd., Department of Chemistry, University of Otago, Dunedin, New Zealand.
| | - Kurt L Krause
- Department of Biochemistry, University of Otago, Dunedin, New Zealand.
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183
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Zhang C, Yuan M, Han G, Gao Y, Tang C, Li X, Du L, Li M. Novel caged luciferin derivatives can prolong bioluminescence imaging in vitro and in vivo. RSC Adv 2018; 8:19596-19599. [PMID: 35540985 PMCID: PMC9080648 DOI: 10.1039/c8ra02312c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 05/20/2018] [Indexed: 12/30/2022] Open
Abstract
Based on N-cyclobutylaminoluciferin (cybLuc), a set of high and efficient caged bioluminescent derivatives (Clucs) as firefly luciferase pro-substrates has been developed herein. After careful examination, these molecules exhibited low cytotoxicity and prolonged bioluminescence imaging up to 6 h in vitro and in vivo. Importantly, these caged luciferin derivatives have the potential to serve as long-term tracking tools to explore some biological process by using bioluminescent imaging. A set of high and efficient caged luciferin derivatives exhibited low cytotoxicity and prolonged bioluminescence in vitro and in vivo.![]()
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Affiliation(s)
- Chaochao Zhang
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Mingliang Yuan
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Guangxi Han
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Yuqi Gao
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Chunchao Tang
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Xiang Li
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Lupei Du
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Minyong Li
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
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184
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BECHARA ETELVINOJ, STEVANI CASSIUSV. Brazilian Bioluminescent Beetles: Reflections on Catching Glimpses of Light in the Atlantic Forest and Cerrado. ACTA ACUST UNITED AC 2018; 90:663-679. [DOI: 10.1590/0001-3765201820170504] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 08/11/2017] [Indexed: 11/21/2022]
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185
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Wider D, Picard D. Secreted dual reporter assay with Gaussia luciferase and the red fluorescent protein mCherry. PLoS One 2017; 12:e0189403. [PMID: 29220385 PMCID: PMC5722324 DOI: 10.1371/journal.pone.0189403] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Accepted: 11/26/2017] [Indexed: 11/18/2022] Open
Abstract
The availability of a wide range of reporter proteins, which can easily be quantitated, has had a major impact on many fields of biomedical research. In some experiments with tissue culture cells, it is necessary to control for differences in transfection efficiency and in other expression parameters. This requirement has been very conveniently met with the popular dual luciferase assay. Its disadvantages are the requirement for cell lysis, the inability to analyze the same cells repeatedly, and the cost, at least in its most commonly used commercial format. Here we describe a novel dual reporter assay with the naturally secreted luciferase from Gaussia princeps as the main reporter protein and a secreted version of the red fluorescent protein mCherry as internal standard. After first measuring mCherry fluorescence in the medium, an enzyme buffer with coelenterazine as substrate is added to the same sample to trigger a glow-type luminescence of the luciferase. The simple and cheap assay can easily be adapted to a variety of experimental situations. As a case in point, we have developed a panel of Gaussia luciferase reporter genes for transcriptional activation assays with estrogen and glucocorticoid response elements, and with response elements for fusion proteins with the Gal4 DNA binding domain for use in mammalian cells. Our secreted dual reporter assay should be an attractive alternative to the currently available commercial kits.
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Affiliation(s)
- Diana Wider
- Département de Biologie Cellulaire, Université de Genève, Sciences III, Genève, Switzerland
| | - Didier Picard
- Département de Biologie Cellulaire, Université de Genève, Sciences III, Genève, Switzerland
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186
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 and 1=1#] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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187
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 and 1=1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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188
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 or(1=2)-- -] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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189
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 and 1=2-- -] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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190
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 and 1=1-- -] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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191
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017; 94:338-342. [DOI: 10.1111/php.12847] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2017] [Accepted: 09/15/2017] [Indexed: 12/16/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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192
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 and 1=2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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193
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 and 1=2#] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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194
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Yasuno R, Mitani Y, Ohmiya Y. Effects of N
-Glycosylation Deletions on Cypridina
Luciferase Activity. Photochem Photobiol 2017. [DOI: 10.1111/php.12847 or(1=1)-- -] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rie Yasuno
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
| | - Yasuo Mitani
- Bioproduction Research Institute; AIST; Sapporo Japan
| | - Yoshihiro Ohmiya
- Biomedical Research Institute; National Institute of Advanced Industrial Science and Technology (AIST); Tsukuba Japan
- DAILAB; Biomedical Research Institute; AIST; Tsukuba Japan
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195
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Hiblot J, Yu Q, Sabbadini MD, Reymond L, Xue L, Schena A, Sallin O, Hill N, Griss R, Johnsson K. Luciferases with Tunable Emission Wavelengths. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201708277] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Julien Hiblot
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
| | - Qiuliyang Yu
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
| | - Marina D.B. Sabbadini
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Luc Reymond
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Lin Xue
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
| | - Alberto Schena
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Olivier Sallin
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Nicholas Hill
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Rudolf Griss
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Kai Johnsson
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
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196
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Hiblot J, Yu Q, Sabbadini MD, Reymond L, Xue L, Schena A, Sallin O, Hill N, Griss R, Johnsson K. Luciferases with Tunable Emission Wavelengths. Angew Chem Int Ed Engl 2017; 56:14556-14560. [DOI: 10.1002/anie.201708277] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Julien Hiblot
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
| | - Qiuliyang Yu
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
| | - Marina D.B. Sabbadini
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Luc Reymond
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Lin Xue
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
| | - Alberto Schena
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Olivier Sallin
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Nicholas Hill
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Rudolf Griss
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
| | - Kai Johnsson
- Ecole Polytechnique Fédérale de Lausanne, EPFL; Institute of Chemical Sciences and Engineering, ISIC, NCCR in Chemical Biology; 1015 Lausanne Switzerland
- Max-Planck-Institute for Medical Research; Department of Chemical Biology; 69120 Heidelberg Germany
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197
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Wagmann L, Maurer HH, Meyer MR. An easy and fast adenosine 5'-diphosphate quantification procedure based on hydrophilic interaction liquid chromatography-high resolution tandem mass spectrometry for determination of the in vitro adenosine 5'-triphosphatase activity of the human breast cancer resistance protein ABCG2. J Chromatogr A 2017; 1521:123-130. [PMID: 28951049 DOI: 10.1016/j.chroma.2017.09.034] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 09/01/2017] [Accepted: 09/15/2017] [Indexed: 11/30/2022]
Abstract
Interactions with the human breast cancer resistance protein (hBCRP) significantly influence the pharmacokinetic properties of a drug and can even lead to drug-drug interactions. As efflux pump from the ABC superfamily, hBCRP utilized energy gained by adenosine 5'-triphosphate (ATP) hydrolysis for the transmembrane movement of its substrates, while adenosine 5'-diphosphate (ADP) and inorganic phosphate were released. The ADP liberation can be used to detect interactions with the hBCRP ATPase. An ADP quantification method based on hydrophilic interaction liquid chromatography (HILIC) coupled to high resolution tandem mass spectrometry (HR-MS/MS) was developed and successfully validated in accordance to the criteria of the guideline on bioanalytical method validation by the European Medicines Agency. ATP and adenosine 5'-monophosphate were qualitatively included to prevent interferences. Furthermore, a setup consisting of six sample sets was evolved that allowed detection of hBCRP substrate or inhibitor properties of the test compound. The hBCRP substrate sulfasalazine and the hBCRP inhibitor orthovanadate were used as controls. To prove the applicability of the procedure, the effect of amprenavir, indinavir, nelfinavir, ritonavir, and saquinavir on the hBCRP ATPase activity was tested. Nelfinavir, ritonavir, and saquinavir were identified as hBCRP ATPase inhibitors and none of the five HIV protease inhibitors turned out to be an hBCRP substrate. These findings were in line with a pervious publication.
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Affiliation(s)
- Lea Wagmann
- Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology, Saarland University, D-66421 Homburg, Saar, Germany
| | - Hans H Maurer
- Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology, Saarland University, D-66421 Homburg, Saar, Germany
| | - Markus R Meyer
- Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology, Saarland University, D-66421 Homburg, Saar, Germany.
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198
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Min CG, Ferreira PJ, Pinto da Silva L. Theoretically obtained insight into the mechanism and dioxetanone species responsible for the singlet chemiexcitation of Coelenterazine. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2017; 174:18-26. [DOI: 10.1016/j.jphotobiol.2017.07.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 07/01/2017] [Accepted: 07/14/2017] [Indexed: 12/13/2022]
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199
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High-Throughput Screening for Identification of Novel Innate Immune Activators. Methods Mol Biol 2017. [PMID: 28808971 DOI: 10.1007/978-1-4939-7237-1_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Modern drug discovery has embraced in vitro platforms that enable investigation of large numbers of compounds within tractable timeframes and for feasible costs. These endeavors have been greatly aided in recent years by advances in molecular and cell-based methods such as gene delivery and editing technology, advanced imaging, robotics, and quantitative analysis. As such, the examination of phenotypic impacts of novel molecules may only be limited by the size of the compound collection. Innate immune signaling processes in mammalian cells are especially amenable to high-throughput screening platforms since the cellular responses elicited by their activation often result in high level transcription that can be harnessed in the form of bioluminescent or fluorescent signal. In addition, targeted activation of innate immune pathways represents a valuable therapeutic strategy applicable to multiple chronic and acute human diseases. Herein, we describe the optimization and utilization of a high-throughput screening method using human reporter cells reactive to stimulation of the type I interferon response. Importantly, the principles and methods described can be applied to adherent reporter cells of diverse derivation and innate signaling pathway readouts.
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200
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Pinto da Silva L, Pereira RFJ, Magalhães CM, Esteves da Silva JCG. Mechanistic Insight into Cypridina Bioluminescence with a Combined Experimental and Theoretical Chemiluminescent Approach. J Phys Chem B 2017; 121:7862-7871. [DOI: 10.1021/acs.jpcb.7b06295] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Luís Pinto da Silva
- Chemistry
Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
- LACOMEPHI,
Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Rui F. J. Pereira
- Chemistry
Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Carla M. Magalhães
- Chemistry
Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Joaquim C. G. Esteves da Silva
- LACOMEPHI,
Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
- Chemistry
Research Unit (CIQUP), Department of Geosciences, Environment and
Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
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