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For: Chateigner-Boutin AL, Ramos-Vega M, Guevara-García A, Andrés C, de la Luz Gutiérrez-Nava M, Cantero A, Delannoy E, Jiménez LF, Lurin C, Small I, León P. CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. Plant J 2008;56:590-602. [PMID: 18657233 DOI: 10.1111/j.1365-313x.2008.03634.x] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Number Cited by Other Article(s)
151
Fine mapping of cisc(t), a gene for cold-induced seedling chlorosis, and identification of its candidate in rice. CHINESE SCIENCE BULLETIN 2010. [DOI: 10.1007/s11434-010-4041-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
152
Chi W, Mao J, Li Q, Ji D, Zou M, Lu C, Zhang L. Interaction of the pentatricopeptide-repeat protein DELAYED GREENING 1 with sigma factor SIG6 in the regulation of chloroplast gene expression in Arabidopsis cotyledons. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;64:14-25. [PMID: 20626654 DOI: 10.1111/j.1365-313x.2010.04304.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
153
RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain. FEBS Lett 2010;584:4181-6. [PMID: 20828567 DOI: 10.1016/j.febslet.2010.08.049] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2010] [Revised: 08/19/2010] [Accepted: 08/31/2010] [Indexed: 11/22/2022]
154
Sung TY, Tseng CC, Hsieh MH. The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;63:499-511. [PMID: 20497377 DOI: 10.1111/j.1365-313x.2010.04258.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
155
Salmans ML, Chaw SM, Lin CP, Shih ACC, Wu YW, Mulligan RM. Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes. Curr Genet 2010;56:439-46. [PMID: 20617318 PMCID: PMC2943580 DOI: 10.1007/s00294-010-0312-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2010] [Revised: 06/11/2010] [Accepted: 06/16/2010] [Indexed: 11/30/2022]
156
Takenaka M, Verbitskiy D, Zehrmann A, Brennicke A. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. J Biol Chem 2010;285:27122-27129. [PMID: 20566637 DOI: 10.1074/jbc.m110.128611] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
157
Tseng CC, Sung TY, Li YC, Hsu SJ, Lin CL, Hsieh MH. Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant. PLANT MOLECULAR BIOLOGY 2010;73:309-23. [PMID: 20143129 DOI: 10.1007/s11103-010-9616-5] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2009] [Accepted: 01/30/2010] [Indexed: 05/04/2023]
158
Tasaki E, Hattori M, Sugita M. The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;62:560-70. [PMID: 20163555 DOI: 10.1111/j.1365-313x.2010.04175.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
159
Sloan DB, Taylor DR. Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing. J Mol Evol 2010;70:479-91. [PMID: 20424833 DOI: 10.1007/s00239-010-9346-y] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2010] [Accepted: 04/13/2010] [Indexed: 11/26/2022]
160
Doniwa Y, Ueda M, Ueta M, Wada A, Kadowaki KI, Tsutsumi N. The involvement of a PPR protein of the P subfamily in partial RNA editing of an Arabidopsis mitochondrial transcript. Gene 2010;454:39-46. [DOI: 10.1016/j.gene.2010.01.008] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2009] [Revised: 01/22/2010] [Accepted: 01/23/2010] [Indexed: 11/16/2022]
161
Tillich M, Krause K. The ins and outs of editing and splicing of plastid RNAs: lessons from parasitic plants. N Biotechnol 2010;27:256-66. [PMID: 20206308 DOI: 10.1016/j.nbt.2010.02.020] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
162
Yue R, Wang X, Chen J, Ma X, Zhang H, Mao C, Wu P. A rice stromal processing peptidase regulates chloroplast and root development. PLANT & CELL PHYSIOLOGY 2010;51:475-485. [PMID: 20097911 DOI: 10.1093/pcp/pcq012] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
163
Hernandez Mora JR, Rivals E, Mireau H, Budar F. Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo). BMC PLANT BIOLOGY 2010;10:35. [PMID: 20178653 PMCID: PMC2848758 DOI: 10.1186/1471-2229-10-35] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2009] [Accepted: 02/24/2010] [Indexed: 05/06/2023]
164
Gray MW. RNA editing in plant mitochondria: 20 years later. IUBMB Life 2010;61:1101-4. [PMID: 19946897 DOI: 10.1002/iub.272] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
165
Tang J, Kobayashi K, Suzuki M, Matsumoto S, Muranaka T. The mitochondrial PPR protein LOVASTATIN INSENSITIVE 1 plays regulatory roles in cytosolic and plastidial isoprenoid biosynthesis through RNA editing. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;61:456-66. [PMID: 19929879 DOI: 10.1111/j.1365-313x.2009.04082.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
166
Verbitskiy D, Zehrmann A, van der Merwe JA, Brennicke A, Takenaka M. The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;61:446-55. [PMID: 19919573 DOI: 10.1111/j.1365-313x.2009.04076.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
167
Stern DB, Goldschmidt-Clermont M, Hanson MR. Chloroplast RNA metabolism. ANNUAL REVIEW OF PLANT BIOLOGY 2010;61:125-55. [PMID: 20192740 DOI: 10.1146/annurev-arplant-042809-112242] [Citation(s) in RCA: 301] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
168
Okuda K, Hammani K, Tanz SK, Peng L, Fukao Y, Myouga F, Motohashi R, Shinozaki K, Small I, Shikanai T. The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;61:339-49. [PMID: 19845878 DOI: 10.1111/j.1365-313x.2009.04059.x] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
169
Hammani K, Okuda K, Tanz SK, Chateigner-Boutin AL, Shikanai T, Small I. A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. THE PLANT CELL 2009;21:3686-99. [PMID: 19934379 PMCID: PMC2798323 DOI: 10.1105/tpc.109.071472] [Citation(s) in RCA: 145] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2009] [Revised: 10/09/2009] [Accepted: 10/30/2009] [Indexed: 05/18/2023]
170
Yura K, Sulaiman S, Hatta Y, Shionyu M, Go M. RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures. PLANT & CELL PHYSIOLOGY 2009;50:1865-73. [PMID: 19808808 PMCID: PMC2775959 DOI: 10.1093/pcp/pcp132] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2009] [Accepted: 09/24/2009] [Indexed: 05/21/2023]
171
Kim SR, Yang JI, Moon S, Ryu CH, An K, Kim KM, Yim J, An G. Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2009;59:738-49. [PMID: 19453459 DOI: 10.1111/j.1365-313x.2009.03909.x] [Citation(s) in RCA: 117] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
172
Yu QB, Jiang Y, Chong K, Yang ZN. AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2009;59:1011-23. [PMID: 19500301 DOI: 10.1111/j.1365-313x.2009.03930.x] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
173
Tillich M, Sy VL, Schulerowitz K, von Haeseler A, Maier UG, Schmitz-Linneweber C. Loss of matK RNA editing in seed plant chloroplasts. BMC Evol Biol 2009;9:201. [PMID: 19678945 PMCID: PMC2744683 DOI: 10.1186/1471-2148-9-201] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2009] [Accepted: 08/13/2009] [Indexed: 11/30/2022]  Open
174
Cai W, Ji D, Peng L, Guo J, Ma J, Zou M, Lu C, Zhang L. LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis. PLANT PHYSIOLOGY 2009;150:1260-71. [PMID: 19448041 PMCID: PMC2705037 DOI: 10.1104/pp.109.136812] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2009] [Accepted: 05/11/2009] [Indexed: 05/18/2023]
175
Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small I, Imbault P, Gualberto JM. Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation. THE PLANT CELL 2009;21:2058-71. [PMID: 19602623 PMCID: PMC2729595 DOI: 10.1105/tpc.109.066654] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2009] [Revised: 06/12/2009] [Accepted: 06/26/2009] [Indexed: 05/13/2023]
176
Karcher D, Bock R. Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme. RNA (NEW YORK, N.Y.) 2009;15:1251-7. [PMID: 19460869 PMCID: PMC2704073 DOI: 10.1261/rna.1600609] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
177
Robbins JC, Heller WP, Hanson MR. A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. RNA (NEW YORK, N.Y.) 2009;15:1142-53. [PMID: 19395655 PMCID: PMC2685521 DOI: 10.1261/rna.1533909] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2008] [Accepted: 03/11/2009] [Indexed: 05/18/2023]
178
Zhou W, Cheng Y, Yap A, Chateigner-Boutin AL, Delannoy E, Hammani K, Small I, Huang J. The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2009;58:82-96. [PMID: 19054358 DOI: 10.1111/j.1365-313x.2008.03766.x] [Citation(s) in RCA: 141] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
179
Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs. Proc Natl Acad Sci U S A 2009;106:6002-7. [PMID: 19297624 DOI: 10.1073/pnas.0808529106] [Citation(s) in RCA: 95] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
180
del Campo EM. Post-transcriptional control of chloroplast gene expression. GENE REGULATION AND SYSTEMS BIOLOGY 2009;3:31-47. [PMID: 19838333 PMCID: PMC2758277 DOI: 10.4137/grsb.s2080] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
181
Zehrmann A, Verbitskiy D, van der Merwe JA, Brennicke A, Takenaka M. A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. THE PLANT CELL 2009;21:558-67. [PMID: 19252080 PMCID: PMC2660620 DOI: 10.1105/tpc.108.064535] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2008] [Revised: 01/30/2009] [Accepted: 02/10/2009] [Indexed: 05/18/2023]
182
Okuda K, Chateigner-Boutin AL, Nakamura T, Delannoy E, Sugita M, Myouga F, Motohashi R, Shinozaki K, Small I, Shikanai T. Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. THE PLANT CELL 2009;21:146-56. [PMID: 19182104 PMCID: PMC2648089 DOI: 10.1105/tpc.108.064667] [Citation(s) in RCA: 131] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2008] [Revised: 01/09/2009] [Accepted: 01/16/2009] [Indexed: 05/18/2023]
183
Takenaka M, Brennicke A. Multiplex single-base extension typing to identify nuclear genes required for RNA editing in plant organelles. Nucleic Acids Res 2008;37:e13. [PMID: 19059998 PMCID: PMC2632918 DOI: 10.1093/nar/gkn975] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
184
Okuda K, Habata Y, Kobayashi Y, Shikanai T. Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids. Nucleic Acids Res 2008;36:6155-64. [PMID: 18824480 PMCID: PMC2577327 DOI: 10.1093/nar/gkn629] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2008] [Revised: 09/10/2008] [Accepted: 09/12/2008] [Indexed: 12/04/2022]  Open
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