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For: Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A. Trait variation in yeast is defined by population history. PLoS Genet 2011;7:e1002111. [PMID: 21698134 PMCID: PMC3116910 DOI: 10.1371/journal.pgen.1002111] [Citation(s) in RCA: 237] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2010] [Accepted: 04/13/2011] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
151
Williams KM, Liu P, Fay JC. Evolution of ecological dominance of yeast species in high-sugar environments. Evolution 2015;69:2079-93. [PMID: 26087012 PMCID: PMC4751874 DOI: 10.1111/evo.12707] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Accepted: 06/15/2015] [Indexed: 12/23/2022]
152
Marsit S, Dequin S. Diversity and adaptive evolution of Saccharomyces wine yeast: a review. FEMS Yeast Res 2015. [PMID: 26205244 PMCID: PMC4629790 DOI: 10.1093/femsyr/fov067] [Citation(s) in RCA: 106] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
153
Franco-Duarte R, Bigey F, Carreto L, Mendes I, Dequin S, Santos MAS, Pais C, Schuller D. Intrastrain genomic and phenotypic variability of the commercialSaccharomyces cerevisiaestrain Zymaflore VL1 reveals microevolutionary adaptation to vineyard environments. FEMS Yeast Res 2015;15:fov063. [DOI: 10.1093/femsyr/fov063] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/10/2015] [Indexed: 11/13/2022]  Open
154
Breeding Strategy To Generate Robust Yeast Starter Cultures for Cocoa Pulp Fermentations. Appl Environ Microbiol 2015;81:6166-76. [PMID: 26150457 DOI: 10.1128/aem.00133-15] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2015] [Accepted: 05/18/2015] [Indexed: 11/20/2022]  Open
155
Wolters JF, Chiu K, Fiumera HL. Population structure of mitochondrial genomes in Saccharomyces cerevisiae. BMC Genomics 2015;16:451. [PMID: 26062918 PMCID: PMC4464245 DOI: 10.1186/s12864-015-1664-4] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2014] [Accepted: 05/29/2015] [Indexed: 12/13/2022]  Open
156
Wohlbach DJ, Rovinskiy N, Lewis JA, Sardi M, Schackwitz WS, Martin JA, Deshpande S, Daum CG, Lipzen A, Sato TK, Gasch AP. Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production. Genome Biol Evol 2015;6:2557-66. [PMID: 25364804 PMCID: PMC4202335 DOI: 10.1093/gbe/evu199] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
157
Gupta S, Radhakrishnan A, Raharja-Liu P, Lin G, Steinmetz LM, Gagneur J, Sinha H. Temporal expression profiling identifies pathways mediating effect of causal variant on phenotype. PLoS Genet 2015;11:e1005195. [PMID: 26039065 PMCID: PMC4454590 DOI: 10.1371/journal.pgen.1005195] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Accepted: 04/02/2015] [Indexed: 01/04/2023]  Open
158
Clowers KJ, Heilberger J, Piotrowski JS, Will JL, Gasch AP. Ecological and Genetic Barriers Differentiate Natural Populations of Saccharomyces cerevisiae. Mol Biol Evol 2015;32:2317-27. [PMID: 25953281 PMCID: PMC4540968 DOI: 10.1093/molbev/msv112] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
159
Strope PK, Skelly DA, Kozmin SG, Mahadevan G, Stone EA, Magwene PM, Dietrich FS, McCusker JH. The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen. Genome Res 2015;25:762-74. [PMID: 25840857 PMCID: PMC4417123 DOI: 10.1101/gr.185538.114] [Citation(s) in RCA: 247] [Impact Index Per Article: 27.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 02/18/2015] [Indexed: 12/18/2022]
160
Jung PP, Christian N, Kay DP, Skupin A, Linster CL. Protocols and programs for high-throughput growth and aging phenotyping in yeast. PLoS One 2015;10:e0119807. [PMID: 25822370 PMCID: PMC4379057 DOI: 10.1371/journal.pone.0119807] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Accepted: 01/16/2015] [Indexed: 02/06/2023]  Open
161
Liti G. The fascinating and secret wild life of the budding yeast S. cerevisiae. eLife 2015;4. [PMID: 25807086 PMCID: PMC4373461 DOI: 10.7554/elife.05835] [Citation(s) in RCA: 98] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2014] [Accepted: 03/09/2015] [Indexed: 12/18/2022]  Open
162
Song G, Dickins BJA, Demeter J, Engel S, Dunn B, Cherry JM. AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae. PLoS One 2015;10:e0120671. [PMID: 25781462 PMCID: PMC4363492 DOI: 10.1371/journal.pone.0120671] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 01/25/2015] [Indexed: 11/24/2022]  Open
163
Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O’Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat Genet 2015;47:235-41. [PMID: 25665008 PMCID: PMC4645456 DOI: 10.1038/ng.3215] [Citation(s) in RCA: 124] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Accepted: 01/14/2015] [Indexed: 12/14/2022]
164
Emmrich PMF, Roberts HE, Pancaldi V. A Boolean gene regulatory model of heterosis and speciation. BMC Evol Biol 2015;15:24. [PMID: 25888139 PMCID: PMC4349475 DOI: 10.1186/s12862-015-0298-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2014] [Accepted: 01/27/2015] [Indexed: 11/11/2022]  Open
165
Differential regulation of antagonistic pleiotropy in synthetic and natural populations suggests its role in adaptation. G3-GENES GENOMES GENETICS 2015;5:699-709. [PMID: 25711830 PMCID: PMC4426359 DOI: 10.1534/g3.115.017020] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
166
Samani P, Low-Decarie E, McKelvey K, Bell T, Burt A, Koufopanou V, Landry CR, Bell G. Metabolic variation in natural populations of wild yeast. Ecol Evol 2015;5:722-32. [PMID: 25691993 PMCID: PMC4328774 DOI: 10.1002/ece3.1376] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 12/01/2014] [Indexed: 01/08/2023]  Open
167
Treusch S, Albert FW, Bloom JS, Kotenko IE, Kruglyak L. Genetic mapping of MAPK-mediated complex traits Across S. cerevisiae. PLoS Genet 2015;11:e1004913. [PMID: 25569670 PMCID: PMC4287466 DOI: 10.1371/journal.pgen.1004913] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Accepted: 11/21/2014] [Indexed: 01/22/2023]  Open
168
Boynton PJ, Greig D. The ecology and evolution of non-domesticated Saccharomyces species. Yeast 2014;31:449-62. [PMID: 25242436 PMCID: PMC4282469 DOI: 10.1002/yea.3040] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Revised: 09/11/2014] [Accepted: 09/15/2014] [Indexed: 12/13/2022]  Open
169
Ibstedt S, Stenberg S, Bagés S, Gjuvsland AB, Salinas F, Kourtchenko O, Samy JKA, Blomberg A, Omholt SW, Liti G, Beltran G, Warringer J. Concerted evolution of life stage performances signals recent selection on yeast nitrogen use. Mol Biol Evol 2014;32:153-61. [PMID: 25349282 DOI: 10.1093/molbev/msu285] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
170
Unveiling nonessential gene deletions that confer significant morphological phenotypes beyond natural yeast strains. BMC Genomics 2014;15:932. [PMID: 25344683 PMCID: PMC4221665 DOI: 10.1186/1471-2164-15-932] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Accepted: 10/15/2014] [Indexed: 01/26/2023]  Open
171
Acquisition of the ability to assimilate mannitol by Saccharomyces cerevisiae through dysfunction of the general corepressor Tup1-Cyc8. Appl Environ Microbiol 2014;81:9-16. [PMID: 25304510 DOI: 10.1128/aem.02906-14] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
172
Shapira R, Levy T, Shaked S, Fridman E, David L. Extensive heterosis in growth of yeast hybrids is explained by a combination of genetic models. Heredity (Edinb) 2014;113:316-26. [PMID: 24690755 PMCID: PMC4181071 DOI: 10.1038/hdy.2014.33] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Revised: 01/17/2014] [Accepted: 02/04/2014] [Indexed: 11/08/2022]  Open
173
Mukherjee V, Steensels J, Lievens B, Van de Voorde I, Verplaetse A, Aerts G, Willems KA, Thevelein JM, Verstrepen KJ, Ruyters S. Phenotypic evaluation of natural and industrial Saccharomyces yeasts for different traits desirable in industrial bioethanol production. Appl Microbiol Biotechnol 2014;98:9483-98. [PMID: 25267160 DOI: 10.1007/s00253-014-6090-z] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2014] [Revised: 09/09/2014] [Accepted: 09/10/2014] [Indexed: 01/17/2023]
174
Stelkens RB, Brockhurst MA, Hurst GDD, Miller EL, Greig D. The effect of hybrid transgression on environmental tolerance in experimental yeast crosses. J Evol Biol 2014;27:2507-19. [PMID: 25262771 DOI: 10.1111/jeb.12494] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2014] [Revised: 08/22/2014] [Accepted: 09/01/2014] [Indexed: 01/29/2023]
175
Stelkens RB, Brockhurst MA, Hurst GDD, Greig D. Hybridization facilitates evolutionary rescue. Evol Appl 2014;7:1209-17. [PMID: 25558281 PMCID: PMC4275092 DOI: 10.1111/eva.12214] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Accepted: 08/05/2014] [Indexed: 12/23/2022]  Open
176
Steensels J, Verstrepen KJ. Taming Wild Yeast: Potential of Conventional and Nonconventional Yeasts in Industrial Fermentations. Annu Rev Microbiol 2014;68:61-80. [DOI: 10.1146/annurev-micro-091213-113025] [Citation(s) in RCA: 166] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
177
Large-scale selection and breeding to generate industrial yeasts with superior aroma production. Appl Environ Microbiol 2014;80:6965-75. [PMID: 25192996 DOI: 10.1128/aem.02235-14] [Citation(s) in RCA: 100] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
178
Steensels J, Snoek T, Meersman E, Nicolino MP, Voordeckers K, Verstrepen KJ. Improving industrial yeast strains: exploiting natural and artificial diversity. FEMS Microbiol Rev 2014;38:947-95. [PMID: 24724938 PMCID: PMC4293462 DOI: 10.1111/1574-6976.12073] [Citation(s) in RCA: 257] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2013] [Revised: 01/31/2014] [Accepted: 04/02/2014] [Indexed: 12/23/2022]  Open
179
Bengtsson-Palme J, Alm Rosenblad M, Molin M, Blomberg A. Metagenomics reveals that detoxification systems are underrepresented in marine bacterial communities. BMC Genomics 2014;15:749. [PMID: 25179155 PMCID: PMC4161860 DOI: 10.1186/1471-2164-15-749] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2014] [Accepted: 08/26/2014] [Indexed: 11/10/2022]  Open
180
Ploidy-regulated variation in biofilm-related phenotypes in natural isolates of Saccharomyces cerevisiae. G3-GENES GENOMES GENETICS 2014;4:1773-86. [PMID: 25060625 PMCID: PMC4169170 DOI: 10.1534/g3.114.013250] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
181
Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli. BMC Microbiol 2014;14:171. [PMID: 24964927 PMCID: PMC4096534 DOI: 10.1186/1471-2180-14-171] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Accepted: 06/06/2014] [Indexed: 11/11/2022]  Open
182
Kar RK, Qureshi MT, DasAdhikari AK, Zahir T, Venkatesh KV, Bhat PJ. Stochastic galactokinase expression underlies GAL gene induction in a GAL3 mutant of Saccharomyces cerevisiae. FEBS J 2014;281:1798-817. [PMID: 24785355 DOI: 10.1111/febs.12741] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
183
Almeida P, Gonçalves C, Teixeira S, Libkind D, Bontrager M, Masneuf-Pomarède I, Albertin W, Durrens P, Sherman DJ, Marullo P, Hittinger CT, Gonçalves P, Sampaio JP. A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nat Commun 2014;5:4044. [PMID: 24887054 DOI: 10.1038/ncomms5044] [Citation(s) in RCA: 147] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Accepted: 05/02/2014] [Indexed: 12/16/2022]  Open
184
Franco-Duarte R, Mendes I, Umek L, Drumonde-Neves J, Zupan B, Schuller D. Computational models reveal genotype-phenotype associations in Saccharomyces cerevisiae. Yeast 2014;31:265-77. [PMID: 24752995 DOI: 10.1002/yea.3016] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Revised: 04/09/2014] [Accepted: 04/10/2014] [Indexed: 11/11/2022]  Open
185
Parts L. Genome-wide mapping of cellular traits using yeast. Yeast 2014;31:197-205. [PMID: 24700360 DOI: 10.1002/yea.3010] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2013] [Revised: 03/24/2014] [Accepted: 03/25/2014] [Indexed: 11/09/2022]  Open
186
Parts L, Liu YC, Tekkedil MM, Steinmetz LM, Caudy AA, Fraser AG, Boone C, Andrews BJ, Rosebrock AP. Heritability and genetic basis of protein level variation in an outbred population. Genome Res 2014;24:1363-70. [PMID: 24823668 PMCID: PMC4120089 DOI: 10.1101/gr.170506.113] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
187
Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G. A high-definition view of functional genetic variation from natural yeast genomes. Mol Biol Evol 2014;31:872-88. [PMID: 24425782 PMCID: PMC3969562 DOI: 10.1093/molbev/msu037] [Citation(s) in RCA: 207] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
188
Wimalasena TT, Greetham D, Marvin ME, Liti G, Chandelia Y, Hart A, Louis EJ, Phister TG, Tucker GA, Smart KA. Phenotypic characterisation of Saccharomyces spp. yeast for tolerance to stresses encountered during fermentation of lignocellulosic residues to produce bioethanol. Microb Cell Fact 2014;13:47. [PMID: 24670111 PMCID: PMC3986927 DOI: 10.1186/1475-2859-13-47] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2013] [Accepted: 03/19/2014] [Indexed: 12/02/2022]  Open
189
Dhar R, Bergmiller T, Wagner A. INCREASED GENE DOSAGE PLAYS A PREDOMINANT ROLE IN THE INITIAL STAGES OF EVOLUTION OF DUPLICATE TEM-1 BETA LACTAMASE GENES. Evolution 2014;68:1775-91. [DOI: 10.1111/evo.12373] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2013] [Accepted: 01/22/2014] [Indexed: 01/18/2023]
190
Plech M, de Visser JAGM, Korona R. Heterosis is prevalent among domesticated but not wild strains of Saccharomyces cerevisiae. G3 (BETHESDA, MD.) 2014;4:315-23. [PMID: 24347627 PMCID: PMC3931565 DOI: 10.1534/g3.113.009381] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Accepted: 12/11/2013] [Indexed: 11/18/2022]
191
Yeast growth plasticity is regulated by environment-specific multi-QTL interactions. G3-GENES GENOMES GENETICS 2014;4:769-77. [PMID: 24474169 PMCID: PMC4025475 DOI: 10.1534/g3.113.009142] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
192
Mapping genetic variants underlying differences in the central nitrogen metabolism in fermenter yeasts. PLoS One 2014;9:e86533. [PMID: 24466135 PMCID: PMC3897725 DOI: 10.1371/journal.pone.0086533] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Accepted: 12/10/2013] [Indexed: 11/19/2022]  Open
193
Genetics of single-cell protein abundance variation in large yeast populations. Nature 2014;506:494-7. [PMID: 24402228 PMCID: PMC4285441 DOI: 10.1038/nature12904] [Citation(s) in RCA: 109] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2013] [Accepted: 11/19/2013] [Indexed: 12/26/2022]
194
García-Ríos E, Gutiérrez A, Salvadó Z, Arroyo-López FN, Guillamon JM. The fitness advantage of commercial wine yeasts in relation to the nitrogen concentration, temperature, and ethanol content under microvinification conditions. Appl Environ Microbiol 2014;80:704-13. [PMID: 24242239 PMCID: PMC3911103 DOI: 10.1128/aem.03405-13] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Accepted: 11/06/2013] [Indexed: 11/20/2022]  Open
195
Leducq JB. Ecological Genomics of Adaptation and Speciation in Fungi. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2014;781:49-72. [DOI: 10.1007/978-94-007-7347-9_4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
196
An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae. Genetics 2013;196:853-65. [PMID: 24374355 PMCID: PMC3948811 DOI: 10.1534/genetics.113.160291] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
197
Gómez-Pastor R, Garre E, Pérez-Torrado R, Matallana E. Trx2p-dependent regulation of Saccharomyces cerevisiae oxidative stress response by the Skn7p transcription factor under respiring conditions. PLoS One 2013;8:e85404. [PMID: 24376879 PMCID: PMC3871606 DOI: 10.1371/journal.pone.0085404] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2013] [Accepted: 12/04/2013] [Indexed: 01/27/2023]  Open
198
Louvel H, Gillet-Markowska A, Liti G, Fischer G. A set of genetically divergedSaccharomyces cerevisiaestrains with markerless deletions of multiple auxotrophic genes. Yeast 2013;31:91-101. [DOI: 10.1002/yea.2991] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2013] [Revised: 11/11/2013] [Accepted: 11/15/2013] [Indexed: 01/03/2023]  Open
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Divergence of iron metabolism in wild Malaysian yeast. G3-GENES GENOMES GENETICS 2013;3:2187-94. [PMID: 24142925 PMCID: PMC3852381 DOI: 10.1534/g3.113.008011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq. G3-GENES GENOMES GENETICS 2013;3:2163-71. [PMID: 24122055 PMCID: PMC3852379 DOI: 10.1534/g3.113.007492] [Citation(s) in RCA: 107] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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