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For: Ortlund EA, Bridgham JT, Redinbo MR, Thornton JW. Crystal structure of an ancient protein: evolution by conformational epistasis. Science 2007;317:1544-8. [PMID: 17702911 PMCID: PMC2519897 DOI: 10.1126/science.1142819] [Citation(s) in RCA: 322] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Number Cited by Other Article(s)
201
Harms MJ, Thornton JW. Evolutionary biochemistry: revealing the historical and physical causes of protein properties. Nat Rev Genet 2013;14:559-71. [PMID: 23864121 DOI: 10.1038/nrg3540] [Citation(s) in RCA: 240] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
202
Wilkins AD, Venner E, Marciano DC, Erdin S, Atri B, Lua RC, Lichtarge O. Accounting for epistatic interactions improves the functional analysis of protein structures. Bioinformatics 2013;29:2714-21. [PMID: 24021383 PMCID: PMC3799481 DOI: 10.1093/bioinformatics/btt489] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
203
Ingles-Prieto A, Ibarra-Molero B, Delgado-Delgado A, Perez-Jimenez R, Fernandez JM, Gaucher EA, Sanchez-Ruiz JM, Gavira JA. Conservation of protein structure over four billion years. Structure 2013;21:1690-7. [PMID: 23932589 PMCID: PMC3774310 DOI: 10.1016/j.str.2013.06.020] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Revised: 06/07/2013] [Accepted: 06/26/2013] [Indexed: 01/07/2023]
204
Colucci JK, Ortlund EA. Expression, purification and crystallization of the ancestral androgen receptor-DHT complex. Acta Crystallogr Sect F Struct Biol Cryst Commun 2013;69:994-6. [PMID: 23989146 DOI: 10.1107/s1744309113018745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2013] [Accepted: 07/05/2013] [Indexed: 11/10/2022]
205
Podgornaia AI, Casino P, Marina A, Laub MT. Structural basis of a rationally rewired protein-protein interface critical to bacterial signaling. Structure 2013;21:1636-47. [PMID: 23954504 DOI: 10.1016/j.str.2013.07.005] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2013] [Revised: 06/25/2013] [Accepted: 07/03/2013] [Indexed: 02/01/2023]
206
Yokoyama S. Synthetic biology of phenotypic adaptation in vertebrates: the next frontier. Mol Biol Evol 2013;30:1495-9. [PMID: 23603936 PMCID: PMC3684858 DOI: 10.1093/molbev/mst075] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
207
Natarajan C, Inoguchi N, Weber RE, Fago A, Moriyama H, Storz JF. Epistasis among adaptive mutations in deer mouse hemoglobin. Science 2013;340:1324-7. [PMID: 23766324 DOI: 10.1126/science.1236862] [Citation(s) in RCA: 148] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
208
Experimental evidence for the thermophilicity of ancestral life. Proc Natl Acad Sci U S A 2013;110:11067-72. [PMID: 23776221 DOI: 10.1073/pnas.1308215110] [Citation(s) in RCA: 114] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
209
Kulikov AM, Mel’nikov AI, Gornostaev NG, Lazebny OE. Dominance status of shape of male genitalia in interspecific crosses of some Drosophila virilis group species. RUSS J GENET+ 2013. [DOI: 10.1134/s1022795413060069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
210
Musille PM, Pathak M, Lauer JL, Griffin PR, Ortlund EA. Divergent sequence tunes ligand sensitivity in phospholipid-regulated hormone receptors. J Biol Chem 2013;288:20702-12. [PMID: 23737522 DOI: 10.1074/jbc.m113.472837] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
211
de Vos MGJ, Poelwijk FJ, Battich N, Ndika JDT, Tans SJ. Environmental dependence of genetic constraint. PLoS Genet 2013;9:e1003580. [PMID: 23825963 PMCID: PMC3694820 DOI: 10.1371/journal.pgen.1003580] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2012] [Accepted: 05/04/2013] [Indexed: 11/25/2022]  Open
212
Gong LI, Suchard MA, Bloom JD. Stability-mediated epistasis constrains the evolution of an influenza protein. eLife 2013;2:e00631. [PMID: 23682315 PMCID: PMC3654441 DOI: 10.7554/elife.00631] [Citation(s) in RCA: 261] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2013] [Accepted: 04/09/2013] [Indexed: 11/28/2022]  Open
213
Cotterell J, Sharpe J. Mechanistic explanations for restricted evolutionary paths that emerge from gene regulatory networks. PLoS One 2013;8:e61178. [PMID: 23613807 PMCID: PMC3629181 DOI: 10.1371/journal.pone.0061178] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Accepted: 03/07/2013] [Indexed: 11/19/2022]  Open
214
Cutter AD, Jovelin R, Dey A. Molecular hyperdiversity and evolution in very large populations. Mol Ecol 2013;22:2074-95. [PMID: 23506466 PMCID: PMC4065115 DOI: 10.1111/mec.12281] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Revised: 01/24/2013] [Accepted: 01/29/2013] [Indexed: 02/06/2023]
215
Fraser JS, Gross JD, Krogan NJ. From systems to structure: bridging networks and mechanism. Mol Cell 2013;49:222-31. [PMID: 23352243 DOI: 10.1016/j.molcel.2013.01.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
216
Oka K, Kohno S, Urushitani H, Guillette LJ, Ohta Y, Iguchi T, Katsu Y. Molecular cloning and characterization of the corticoid receptors from the American alligator. Mol Cell Endocrinol 2013;365:153-61. [PMID: 23127802 DOI: 10.1016/j.mce.2012.10.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/09/2012] [Revised: 10/11/2012] [Accepted: 10/12/2012] [Indexed: 01/04/2023]
217
Tóth-Petróczy Á, Tawfik DS. Protein Insertions and Deletions Enabled by Neutral Roaming in Sequence Space. Mol Biol Evol 2013;30:761-71. [DOI: 10.1093/molbev/mst003] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
218
Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes. Biochem J 2013;449:581-94. [DOI: 10.1042/bj20121221] [Citation(s) in RCA: 131] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
219
Ashenberg O, Laub MT. Using analyses of amino Acid coevolution to understand protein structure and function. Methods Enzymol 2013;523:191-212. [PMID: 23422431 DOI: 10.1016/b978-0-12-394292-0.00009-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
220
Miller PW, Clarke DN, Weis WI, Lowe CJ, Nelson WJ. The evolutionary origin of epithelial cell-cell adhesion mechanisms. CURRENT TOPICS IN MEMBRANES 2013;72:267-311. [PMID: 24210433 PMCID: PMC4118598 DOI: 10.1016/b978-0-12-417027-8.00008-8] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
221
Olson-Manning CF, Wagner MR, Mitchell-Olds T. Adaptive evolution: evaluating empirical support for theoretical predictions. Nat Rev Genet 2012;13:867-77. [PMID: 23154809 PMCID: PMC3748133 DOI: 10.1038/nrg3322] [Citation(s) in RCA: 138] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
222
Wymore T, Brooks CL. From Molecular Phylogenetics to Quantum Chemistry: Discovering Enzyme Design Principles through Computation. Comput Struct Biotechnol J 2012;2:e201209018. [PMID: 24688659 PMCID: PMC3962182 DOI: 10.5936/csbj.201209018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2012] [Revised: 11/14/2012] [Accepted: 11/15/2012] [Indexed: 11/22/2022]  Open
223
Wierer M, Schrey AK, Kühne R, Ulbrich SE, Meyer HHD. A single glycine-alanine exchange directs ligand specificity of the elephant progestin receptor. PLoS One 2012;7:e50350. [PMID: 23209719 PMCID: PMC3507690 DOI: 10.1371/journal.pone.0050350] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2012] [Accepted: 10/19/2012] [Indexed: 11/18/2022]  Open
224
Smith SD, Wang S, Rausher MD. Functional evolution of an anthocyanin pathway enzyme during a flower color transition. Mol Biol Evol 2012;30:602-12. [PMID: 23155005 DOI: 10.1093/molbev/mss255] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
225
YOKOYAMA SHOZO. Synthesis of Experimental Molecular Biology and Evolutionary Biology: An Example from the World of Vision. Bioscience 2012;62:939-948. [PMID: 23483186 PMCID: PMC3593118 DOI: 10.1525/bio.2012.62.11.3] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
226
Coevolution within and between regulatory loci can preserve promoter function despite evolutionary rate acceleration. PLoS Genet 2012;8:e1002961. [PMID: 23028368 PMCID: PMC3447958 DOI: 10.1371/journal.pgen.1002961] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2012] [Accepted: 08/06/2012] [Indexed: 11/19/2022]  Open
227
Akashi H, Osada N, Ohta T. Weak selection and protein evolution. Genetics 2012;192:15-31. [PMID: 22964835 PMCID: PMC3430532 DOI: 10.1534/genetics.112.140178] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Accepted: 06/11/2012] [Indexed: 01/23/2023]  Open
228
Predicting adaptive phenotypes from multilocus genotypes in Sitka spruce (Picea sitchensis) using random forest. G3-GENES GENOMES GENETICS 2012;2:1085-93. [PMID: 22973546 PMCID: PMC3429923 DOI: 10.1534/g3.112.002733] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2012] [Accepted: 07/03/2012] [Indexed: 11/18/2022]
229
Andreani J, Faure G, Guerois R. Versatility and invariance in the evolution of homologous heteromeric interfaces. PLoS Comput Biol 2012;8:e1002677. [PMID: 22952442 PMCID: PMC3431345 DOI: 10.1371/journal.pcbi.1002677] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2012] [Accepted: 07/24/2012] [Indexed: 11/18/2022]  Open
230
Li Y, Sturm A, Cunningham P, Bury NR. Evidence for a divergence in function between two glucocorticoid receptors from a basal teleost. BMC Evol Biol 2012;12:137. [PMID: 22862956 PMCID: PMC3457903 DOI: 10.1186/1471-2148-12-137] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2011] [Accepted: 07/26/2012] [Indexed: 01/17/2023]  Open
231
Keedy DA, Georgiev I, Triplett EB, Donald BR, Richardson DC, Richardson JS. The role of local backrub motions in evolved and designed mutations. PLoS Comput Biol 2012;8:e1002629. [PMID: 22876172 PMCID: PMC3410847 DOI: 10.1371/journal.pcbi.1002629] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2011] [Accepted: 06/18/2012] [Indexed: 11/23/2022]  Open
232
Weng JK, Philippe RN, Noel JP. The Rise of Chemodiversity in Plants. Science 2012;336:1667-70. [DOI: 10.1126/science.1217411] [Citation(s) in RCA: 253] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
233
Transformation of a transposon into a derived prolactin promoter with function during human pregnancy. Proc Natl Acad Sci U S A 2012;109:11246-51. [PMID: 22733751 DOI: 10.1073/pnas.1118566109] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
234
Sandhya S, Mudgal R, Jayadev C, Abhinandan KR, Sowdhamini R, Srinivasan N. Cascaded walks in protein sequence space: use of artificial sequences in remote homology detection between natural proteins. MOLECULAR BIOSYSTEMS 2012;8:2076-84. [PMID: 22692068 DOI: 10.1039/c2mb25113b] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
235
Park K, Kim D. Structure-based rebuilding of coevolutionary information reveals functional modules in rhodopsin structure. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2012;1824:1484-9. [PMID: 22684088 DOI: 10.1016/j.bbapap.2012.05.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2012] [Revised: 05/01/2012] [Accepted: 05/31/2012] [Indexed: 10/28/2022]
236
Lai J, Jin J, Kubelka J, Liberles DA. A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme function. J Mol Biol 2012;422:442-59. [PMID: 22651983 DOI: 10.1016/j.jmb.2012.05.028] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2012] [Revised: 04/26/2012] [Accepted: 05/22/2012] [Indexed: 12/24/2022]
237
Koren L, Whiteside D, Fahlman S, Ruckstuhl K, Kutz S, Checkley S, Dumond M, Wynne-Edwards K. Cortisol and corticosterone independence in cortisol-dominant wildlife. Gen Comp Endocrinol 2012;177:113-9. [PMID: 22449618 DOI: 10.1016/j.ygcen.2012.02.020] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/09/2011] [Revised: 02/07/2012] [Accepted: 02/28/2012] [Indexed: 12/12/2022]
238
Glembo TJ, Farrell DW, Gerek ZN, Thorpe MF, Ozkan SB. Collective dynamics differentiates functional divergence in protein evolution. PLoS Comput Biol 2012;8:e1002428. [PMID: 22479170 PMCID: PMC3315450 DOI: 10.1371/journal.pcbi.1002428] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2011] [Accepted: 01/30/2012] [Indexed: 12/29/2022]  Open
239
Huyet J, Pinon GM, Fay MR, Rafestin-Oblin ME, Fagart J. Structural determinants of ligand binding to the mineralocorticoid receptor. Mol Cell Endocrinol 2012;350:187-95. [PMID: 21820032 DOI: 10.1016/j.mce.2011.07.035] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/25/2011] [Revised: 07/15/2011] [Accepted: 07/17/2011] [Indexed: 11/15/2022]
240
Kohn JA, Deshpande K, Ortlund EA. Deciphering modern glucocorticoid cross-pharmacology using ancestral corticosteroid receptors. J Biol Chem 2012;287:16267-75. [PMID: 22437833 DOI: 10.1074/jbc.m112.346411] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
241
Pearson H. Prehistoric proteins: Raising the dead. Nature 2012;483:390-3. [DOI: 10.1038/483390a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
242
Huang R, Hippauf F, Rohrbeck D, Haustein M, Wenke K, Feike J, Sorrelle N, Piechulla B, Barkman TJ. Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates. Proc Natl Acad Sci U S A 2012;109:2966-71. [PMID: 22315396 PMCID: PMC3286912 DOI: 10.1073/pnas.1019605109] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
243
Buzón V, Carbó LR, Estruch SB, Fletterick RJ, Estébanez-Perpiñá E. A conserved surface on the ligand binding domain of nuclear receptors for allosteric control. Mol Cell Endocrinol 2012;348:394-402. [PMID: 21878368 DOI: 10.1016/j.mce.2011.08.012] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/12/2011] [Revised: 08/08/2011] [Accepted: 08/12/2011] [Indexed: 12/26/2022]
244
The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis. J Mol Evol 2012;74:1-34. [PMID: 22210458 DOI: 10.1007/s00239-011-9480-1] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2011] [Accepted: 12/12/2011] [Indexed: 12/20/2022]
245
Faure G, Andreani J, Guerois R. InterEvol database: exploring the structure and evolution of protein complex interfaces. Nucleic Acids Res 2012;40:D847-56. [PMID: 22053089 PMCID: PMC3245184 DOI: 10.1093/nar/gkr845] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2011] [Revised: 09/15/2011] [Accepted: 09/21/2011] [Indexed: 11/12/2022]  Open
246
Baker ME, Uh KY, Asnaashari P. 3D models of lamprey corticoid receptor complexed with 11-deoxycortisol and deoxycorticosterone. Steroids 2011;76:1451-7. [PMID: 21840328 DOI: 10.1016/j.steroids.2011.07.015] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/17/2011] [Revised: 07/26/2011] [Accepted: 07/27/2011] [Indexed: 11/17/2022]
247
Lynch M. The evolution of multimeric protein assemblages. Mol Biol Evol 2011;29:1353-66. [PMID: 22144639 DOI: 10.1093/molbev/msr300] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
248
O'Donnell CW, Waldispühl J, Lis M, Halfmann R, Devadas S, Lindquist S, Berger B. A method for probing the mutational landscape of amyloid structure. ACTA ACUST UNITED AC 2011;27:i34-42. [PMID: 21685090 PMCID: PMC3117379 DOI: 10.1093/bioinformatics/btr238] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
249
Peralta H, Guerrero G, Aguilar A, Mora J. Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins. Biol Direct 2011;6:48. [PMID: 21970442 PMCID: PMC3198989 DOI: 10.1186/1745-6150-6-48] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2011] [Accepted: 10/04/2011] [Indexed: 12/03/2022]  Open
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Konno A, Kitagawa A, Watanabe M, Ogawa T, Shirai T. Tracing protein evolution through ancestral structures of fish galectin. Structure 2011;19:711-21. [PMID: 21565705 DOI: 10.1016/j.str.2011.02.014] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2010] [Revised: 02/08/2011] [Accepted: 02/16/2011] [Indexed: 11/16/2022]
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