Significant acidification in major Chinese croplands

Comprehensive QTL analyses of nitrogen use efficiency in indica rice

Nitrogen-use efficiency (NUE) in rice is a complex quantitative trait involved in multiple biological processes and agronomic traits; however, the genetic basis and regulatory network of NUE remain largely unknown. We constructed a high-resolution microarray-based genetic map for 261 recombinant inbred lines derived from two indica parents. Using 2,345 bin markers, comprehensive analyses of quantitative trait loci (QTLs) of seven key agronomic traits under two different N levels were performed. A total of 11 non-redundant QTLs for effective panicle number (EPN), 7 for grain number per panicle, 13 for thousand-grain weight, 2 for seed-setting percentage, 15 for plant height, 12 for panicle length, and 6 for grain yield per plant were identified. The QTL regions were as small as 512 kb on average, and more than half spanned an interval smaller than 100 kb. Using this advantage, we identified possible candidate genes of two major EPN-related QTLs. One QTL detected under both N levels possibly encodes a DELLA protein SLR1, which is known to regulate NUE, although the natural variations of this protein have not been reported. The other QTL detected only under a high N level could encode the transcription factor OsbZIP59. We also predicted the possible candidate genes for another three of the NUE-related QTLs. Our results provide a reference for improving NUE-related QTL cloning and promote our understanding of NUE regulation in indica rice.

Improving Winter Wheat Photosynthesis, Nitrogen Use Efficiency, and Yield by Optimizing Nitrogen Fertilization

Wheat is the third most producing crop in China after maize and rice. In order to enhance the nitrogen use efficiency (NUE) and grain yield of winter wheat, a two-year field experiment was conducted to investigate the effect of different nitrogen ratios and doses at various development stages of winter wheat (Triticum aestivum L.). A total of five N doses (0, N75, N150, N225, and N300 kg ha−1) as main plots and two N ratios were applied in split doses (50%:50% and 60%:40%, referring to 50% at sowing time and 50% at jointing stage, 50% at sowing time + 50% at flowering stage, 50% at sowing time + 50% at grain filling stage, and 60% + 40% N ratio applied as a 60% at sowing time and 40% at jointing stage, 60% at sowing time and 40% at flowering stage, and 60% at sowing time and 40% at grain filling stage in subplots). The results of this study revealed that a nitrogen dose of 225 kg ha−1 significantly augmented the plant height by 27% and above ground biomass (ABG) by 24% at the grain filling stage, and the leaf area was enhanced by 149% at the flowering stage under 60 + 40% ratios. Furthermore, the N225 kg ha−1 significantly prompted the photosynthetic rate by 47% at the jointing and flowering stages followed by grain filling stage compared to the control. The correlation analysis exhibited the positive relationship between nitrogen uptake and nitrogen content, chlorophyll, and dry biomass, revealing that NUE enhanced and ultimately increased the winter wheat yield. In conclusion, our results depicted that optimizing the nitrogen dose (N225 kg/ha−1) with a 60% + 40% ratio at jointing stage increased the grain yield and nitrogen utilization rate.

A Koshihikari X Oryza rufipogon Introgression Line with a High Capacity to Take up Nitrogen to Maintain Growth and Panicle Development under Low Nitrogen Conditions

Nitrogen (N) is an important macronutrient for plant growth and development. Currently, N fertilizers are required for the efficient production of modern crops such as rice due to their limited capacity to take up N when present at low concentrations. Wild rice represents a useful genetic resource for improving crop responses to low nutrient stress. Here, we describe the isolation and characterization of an introgression line, KRIL37, that carries a small region of the Oryza rufipogon genome in the Oryza sativa L. cv Koshihikari (KH) background. This line was found to grow better under low N conditions and have similar or lower C/N ratios in aerial portions compared to those in the parental KH cultivar, suggesting that KRIL37 has a higher capacity to take up and assimilate N when present at low concentrations. KRIL37 performance in the field was also better than that of KH cultivated without N and fertilizer (-F). Transcriptome analyses of 3-week-old seedlings based on RNA-sequencing revealed that KH induced a wider suite of genes than the tolerant line KRIL37 in response to low N conditions. Some ammonium transporters and N assimilation genes were found to be induced under low N in KRIL37, but not in KH. Our findings suggest that the superior growth performance of KRIL37 under limited N conditions could be due to the expression of wild alleles influencing N uptake and assimilation. Our study demonstrates the potential to use wild rice genomes to improve modern crops for low nutrient tolerance.

Rejuvenation of iron oxides enhances carbon sequestration by the 'iron gate' and 'enzyme latch' mechanisms in a rice-wheat cropping system

The 'enzyme latch' theory believes that oxygen constraints on phenol oxidase can restrain the activity of hydrolytic enzymes responsible for decomposition, while the 'iron (Fe) gate' theory suggests that Fe oxidation can decrease phenol oxidase activity and enhance Fe-lignin complexation under oxygen exposure. The objective of this study was to explore the roles of the 'enzyme latch' and 'Fe gate' mechanisms in regulating soil organic carbon (SOC) sequestration in a rice-wheat cropping system subjected to six fertilization treatments: control (CT), chemical fertilizer (CF), CF plus manure (CFM), CF plus straw (CFS), CF plus manure and straw (CFMS), and CF plus organic-inorganic compound fertilizer (OICF). Soil samples were collected after the rice and wheat harvests and wet sieved into large macroaggregates, small macroaggregates, microaggregates, and silt and clay particles. Variations in amorphous and free Fe oxides, Fe-bound organic carbon and phenol oxidase activity were examined. After nine years, compared with the initial soil, the activation degree of free Fe oxides increased by 1.3- to 1.6-fold and the topsoil SOC stock increased by 13-61% across all treatments. Amorphous Fe oxide content, phenol oxidase activity and aggregate mean-weight diameter were higher after the wheat harvest than after the rice harvest. Amorphous Fe oxide content was positively correlated with Fe-bound organic carbon content (P < 0.001) but negatively correlated with phenol oxidase activity (P < 0.001). Therefore, seasonal alternation of wetting and drying can progressively drive the rejuvenation of Fe oxides and simultaneously affect the activity of phenol oxidase. Oxidative precipitation of amorphous Fe oxides promoted the formation of organo-Fe complexes and macroaggregates, while flooding of the paddies decreased the activity of phenol oxidase, thereby resulting in year-round hindered decomposition. Organic fertilization strengthened the roles of the 'Fe gate' and 'enzyme latch' mechanisms, and thus accelerated SOC sequestration in the rice-wheat cropping system.

Optimizing nitrogen management to mitigate gaseous losses and improve net benefits of an open-field Chinese cabbage system

The excessive and inappropriate application of nitrogen (N) fertilizer in open vegetable fields is a major anthropogenic source of gaseous N losses including nitrous oxide (N₂O) and ammonia (NH₃) emissions in China. A 2-yr Chinese cabbage (Brassica pekinensis L.) experiment was carried out to explore the impacts of optimized N management (reduced N application rate, controlled-release urea [CRF] and nitrification inhibitor [NI]) on cabbage yield, soil inorganic N, and N₂O and NH₃ emissions, and to assess their economic benefits by a cost-benefit analysis. Six treatments including i) no N fertilizer (CK), ii) conventional urea fertilizer at 400 kg N ha^-1 based on farmers' practices (CN), iii) conventional urea at 320 kg N ha^-1 (RN), iv) conventional urea (320 kg N ha^-1) with the addition of NI (RN + NI), v) CRF at 320 kg N ha^-1 (CR) and vi) CRF (320 kg N ha^-1) with the addition of NI (CR + NI) were implemented in an open Chinese cabbage field. No significant differences were found in the cabbage yields and soil NH₄⁺-N contents under different N fertilization treatments. Only CR + NI treatment had significantly lower soil NO₃^--N contents than CN by 17.6%-34.6% at the early growing stages of cabbage in both years. Compared with CN, the N₂O emissions were significantly decreased by 8.61%, 34.4%, 37.8% and 46.6% under RN, RN + NI, CR and CR + NI, respectively, indicating that CR + NI favors N₂O abatement especially when NH₃ has been suppressed by other 4 R practices. Meanwhile, the NH₃ volatilization was 20.6% higher under RN + NI and 30.8% and 17.3% lower under CR and CR + NI compared to CN, respectively, which implied that CR was the most effective treatment in reducing the NH₃ volatilization and total gaseous N loss in high NH₃-N loss scenarios. Moreover, the net benefit of RN decreased by $945 USD ha^-1 and those of RN + NI, CR and CR + NI treatments increased by $855, $930 and $1004 USD ha^-1 compared to CN, respectively. This study recommends CR + NI as the optimal N fertilizer management for the sustainable production of vegetables with the lowest environmental risks and the greatest economic benefits.

The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice

Aluminum (Al) toxicity significantly restricts crop production on acidic soils. Although rice is highly resistant to Al stress, the underlying resistant mechanisms are not fully understood. Here, we characterized the function of OsNIP1;2, a plasma membrane-localized nodulin 26-like intrinsic protein (NIP) in rice. Aluminum stress specifically and quickly induced OsNIP1;2 expression in the root. Functional mutations of OsNIP1;2 in two independent rice lines led to significantly enhanced sensitivity to Al but not other metals. Moreover, the Osnip1;2 mutants had considerably more Al accumulated in the root cell wall but less in the cytosol than the wild-type rice. In addition, compared with the wild-type rice plants, the Osnip1;2 mutants contained more Al in the root but less in the shoot. When expressed in yeast, OsNIP1;2 led to enhanced Al accumulation in the cells and enhanced sensitivity to Al stress, suggesting that OsNIP1;2 facilitated Al uptake in yeast. These results suggest that OsNIP1;2 confers internal Al detoxification via taking out the root cell wall's Al, sequestering it to the root cell's vacuole, and re-distributing it to the above-ground tissues.

GWAS and Transcriptome Analysis Reveal Key Genes Affecting Root Growth under Low Nitrogen Supply in Maize

Nitrogen (N) is one of the most important factors affecting crop production. Root morphology exhibits a high degree of plasticity to nitrogen deficiency. However, the mechanisms underlying the root foraging response under low-N conditions remain poorly understood. In this study, we analyzed 213 maize inbred lines using hydroponic systems and regarding their natural variations in 22 root traits and 6 shoot traits under normal (2 mM nitrate) and low-N (0 mM nitrate) conditions. Substantial phenotypic variations were detected for all traits. N deficiency increased the root length and decreased the root diameter and shoot related traits. A total of 297 significant marker-trait associations were identified by a genome-wide association study involving different N levels and the N response value. A total of 51 candidate genes with amino acid variations in coding regions or differentially expressed under low nitrogen conditions were identified. Furthermore, a candidate gene ZmNAC36 was resequenced in all tested lines. A total of 38 single nucleotide polymorphisms and 12 insertions and deletions were significantly associated with lateral root length of primary root, primary root length between 0 and 0.5 mm in diameter, primary root surface area, and total length of primary root under a low-N condition. These findings help us to improve our understanding of the genetic mechanism of root plasticity to N deficiency, and the identified loci and candidate genes will be useful for the genetic improvement of maize tolerance cultivars to N deficiency.

Organic amendments improved soil quality and reduced ecological risks of heavy metals in a long-term tea plantation field trial on an Alfisol

Tea plantation can cause strong soil degradation, e.g. acidification, basic nutrient decrease and microbial diversity loss, naturally by its root activity and secondary by practically tremendous synthetic N input. Organic amendments application is considered a practical way to mitigate the above adverse consequence. However, the trade-off between agronomic and environmental effects on the application of the organic amendments is still under debate. Herein, we conducted a long-term field experiment with four treatments, including control (without and fertiliser) (CK), chemical fertiliser treatment (CF), chicken manure treatment (CM) and chicken manure combined with biochar treatment (CMB) to investigate the effects of organic amendments application on soil quality, heavy metal contamination and tea production in a tea plantation. Totally 16 plots were arranged randomly with a completely randomised design. The results showed that CM and CMB treatments improved soil nutrient, mitigated soil acidification and ameliorated soil porosity compared to CF treatment. CMB treatment displayed a relatively high tea yield and quality in three consecutive years of monitoring. However, CM and CMB treatments elevated the heavy metal (HM) potential ecological risk (RI) and Nemerow's composite index (Ps). CM treatment significantly increased available As, Pb, Cu and Zn concentrations compared to CF treatment, while CMB treatment significantly decreased available Cr and Cu concentrations and slightly decreased available Cd, Pb and Ni concentrations compared to CM treatment. But the increase of available As and Zn in CMB treatment compared to CM treatment also indicated adverse effects of biochar addition. The PLS-PM model showed HM risk had direct negative effects on tea quality. Moreover, soil fungal community revealed positive effects on tea yield and negative effects on tea quality. Overall, our study proved that CMB treatment could improve soil quality, reduce available Cr and Ni concentrations, maintain tea yield and increase tea quality.

Unveiling the role of dissolved organic matter on phosphorus sorption and availability in a 5-year manure amended paddy soil

Dissolved organic matter (DOM) is an active component of organic manure that is widely used in agroecosystems to increase nutrient availability and consequently enhance crop yields. However, the ways in which soil DOM characteristics are influenced by organic manure and how it contributes to crop yield and soil P availability remains unclear. Here, we conducted a 5-year field experiment and demonstrated that partial replacement of chemical P fertilizer with swine manure could maintain high rice yield and soil available P levels and increase P fertilizer use efficiency (PUE) in comparison to chemical fertilization, even when the total P input was reduced. This suggests that organic manure application can significantly mobilize soil P and increase P availability. Structural equation modeling analysis indicated that the soil pH and humification degree of DOM, rather than DOM content, directly decreased maximum P adsorption capacity. The combined results of the optical spectroscopy and ultrahigh-resolution mass spectroscopy obtained from the laboratory validation experiment based on the DOM-removed soil demonstrated that manure-derived DOM competing with P for adsorption was one of the main reasons for the increase in soil P availability and that the effective DOM components were N-containing lignins, tannins, and condensed polycyclic aromatics with higher O/C and lower H/C ratios. Overall, our results provide solid evidence that soil DOM characteristics are influenced by manure application and facilitate soil P availability, which could help guide the sustainable P management and manure application in agroecosystems.

Arable land and water footprints for food consumption in China: From the perspective of urban and rural dietary change

Since the adoption of the open-door policy, the Chinese dietary pattern has changed greatly. Based on the dietary changes, this study analyzed the arable land and water footprints (WFs) for the food consumption of urban and rural residents in China. The results showed that the arable land demand and WFs for meat, vegetable oil, soybeans and liquor exceeded those for other foods, and the per capita arable land and WFs for food consumption of urban residents were higher than those of rural residents. The total arable land and WFs for the food consumption of residents increased by 16.9 million ha (from 91.1 to 108 million ha) and 214.5 billion m³ (from 457.9 to 672.4 billion m³), respectively, from 1983 to 2017. Specifically, the total arable land and WFs for the food consumption of urban residents increased by 45.9 million hm² (from 22.6 to 68.5 million hm²) and 318.3 billion m³ (from 113.2 to 431.5 billion m³), respectively. Additionally, those of rural residents decreased by 29.7 million hm² (from 69.2 to 39.5 million hm²) and 103.9 billion m³ (344.8 to 240.9 billion m³), respectively, mainly due to the migration of the rural population to cities and the reductions in per capita arable land and WFs due to increased crop yields. The arable land and blue WFs required for food consumption will reach 127.7 million hm² and 221.1 billion m³, respectively, in 2030. However, these values will be reduced by approximately 23% and 20%, respectively, to 98.9 million hm² and 177.8 billion m³ under a balanced dietary pattern. Measures such as improving the investment in agricultural research and development, advocating a balanced diet, and increasing the import of resource-intensive foods could alleviate the pressure on land and water resources.

Is the NH4 +-induced growth inhibition caused by the NH4 + form of the nitrogen source or by soil acidification?

Soil acidification often occurs when the concentration of ammonium (NH₄ ⁺) in soil rises, such as that observed in farmland. Both soil acidification and excess NH₄ ⁺ have serious adverse effects on crop growth and food production. However, we still do not know which of these two inhibitors has a greater impact on the growth of crops, and the degree of their inhibitory effect on crop growth have not been accurately evaluated. 31 wheat cultivars originating in various areas of China were planted under 5 mM sole NH₄ ⁺ (ammonium nitrogen, AN) or nitrate nitrogen in combined with two pH levels resembling acidified conditions (5.0 and 6.5). The results showed that the shoots and roots biomass were severely reduced by AN in both and these reduction effects were strengthened by a low medium pH. The concentration of free NH₄ ⁺ and amino acids, the glutamine synthetase activity were significantly higher, but the total soluble sugar content was reduced under NH₄ ⁺ conditions, and the glutamine synthetase activity was reduced by a low medium pH. Cultivar variance was responsible for the largest proportion of the total variance in plant dry weight, leaf area, nodal root number, total root length and root volume; the nitrogen (N) form explains most of the variation in N and C metabolism; the effects of pH were the greatest for plant height and root average diameter. So, soil acidification and excess NH₄ ⁺ would cause different degrees of inhibition effects on different plant tissues. The findings are expected to be useful for applying effective strategies for reducing NH₄ ⁺ stress in the field.

A suitable organic fertilizer substitution ratio could improve maize yield and soil fertility with low pollution risk

Organic fertilizer substitution (OFS) is an effective strategy for reducing the chemical fertilizer usage; however, the effects of different OFS ratios (OFSRs) on maize yield, soil fertility, and heavy metal pollution risk are still unclear. Therefore, determining a suitable OFSR is important. Through the pot experiment, no fertilizer (CK) and organic fertilizer substituting 0% (CF, chemical fertilizer alone), 8% (OF8), 16% (OF16), and 24% (OF24) of the chemical N fertilizer were set to investigate the effects of different OFSRs on maize growth and yield, soil properties (available nutrients, carbon fractions, and carbon pool indices), and nutrients and heavy metals in grain and soil. The results showed that OF8, OF16, and OF24 improved soil fertility by increasing soil organic carbon (SOC, by 10.05-16.26%) and its fractions, most middle- and micro-nutrients content, and carbon pool management index (CPMI, by 17.45-30.31%) compared with CF, while improving grain nutritional quality. However, they increased heavy metals content in grain and soil and their Nemerow comprehensive pollution index (NCPI, by 4.06-16.56% in grain and 2.55-5.57% in soil) but did not cause pollution. Among them, throughout the growth period, only OF8 treatment increased soil available nitrogen (AN), phosphorus (AP), and potassium (AK) content by 3.04-11.15%, 7.11-8.05%, and 0.12-6.05%, respectively, compared with CF, which thus significantly promoted maize growth and increased yield (by 35.65%); the NCPI of grain and soil was however lower than that OF16 and OF24. In conclusion, substitution ratio of 8% was considered ideal for promoting maize growth, improving yield and soil fertility, with a low pollution risk. The results of this study would aid in guiding the scientific application of OFS technology to agricultural production, thereby contributing to resource utilization of organic waste and sustainable agricultural development.

Short-term application of chicken manure under different nitrogen rates alters structure and co-occurrence pattern but not diversity of soil microbial community in wheat field

Manure application is an effective way to improve the utilization efficiency of organic resources and alleviate the adverse effects of long-term application of chemical fertilizers. However, the impact of applying manure under different nitrogen rates on soil microbial community in wheat field remains unclear. Treatments with and without chicken manure application under three nitrogen rates (N 135, 180 and 225 kg⋅hm-2) were set in wheat field. Soil organic carbon, available nutrients, and abundance, diversity, structure and co-occurrence pattern of soil microbial community at wheat maturity were investigated. Compared with no manure application, chicken manure application increased the soil organic carbon and available phosphorus, while the effects on soil mineral nitrogen and available potassium varied with different nitrogen rates. Chicken manure application significantly increased soil bacterial abundance under the nitrogen fertilization of 135 and 225 kg⋅hm-2, increased soil fungal abundance under the nitrogen fertilization of 135 kg⋅hm-2, but decreased soil fungal abundance under the nitrogen fertilization of 180 and 225 kg⋅hm-2 (P < 0.05). There was no significant difference in alpha diversity indices of soil microbial communities between treatments with and without chicken manure application under different nitrogen rates (P > 0.05). Chicken manure application and its interaction with nitrogen rate significantly changed soil bacterial and fungal community structures (P < 0.05). There were significantly different taxa of soil microbial communities between treatments with and without chicken manure application. Chicken manure application reduced the ecological network complexity of soil bacterial community and increased that of soil fungal community. In summary, the responses of soil available nutrients and microbial abundance to applying chicken manure varied with different nitrogen rates. One growing season application of chicken manure was sufficient to alter the soil microbial community structure, composition and co-occurrence pattern, whereas not significantly affected soil microbial community diversity.

Effects of biochar and chemical fertilizer amendment on diazotrophic abundance and community structure in rhizosphere and bulk soils

Diazotrophs carry out biological nitrogen (N) fixation process that replenishes available soil N; it is unclear how soil diazotrophic communities respond to biochar and chemical fertilizer amendment in agricultural ecosystem. Herein, we studied the impacts of biochar and chemical fertilizer amendment on diazotrophic communities in rhizosphere and bulk soils using nifH gene. The field experiment included four treatments: control (CK), biochar (B), chemical NPK fertilizer (CF), and biochar + chemical fertilizer (B + CF). nifH gene abundance in rhizosphere soils ranged from 9.00 × 10⁷ to 2.57 × 10⁸ copies g^-1 dry soil among the different treatments, which was 1.42-2.68 times higher compared with the bulk soils ranging from 5.83 × 10⁷ to 1.19 × 10⁸ copies g^-1 dry soil. Single application of biochar increased the abundance of nifH gene, whereas chemical fertilizer addition significantly decreased it in the bulk and rhizosphere soils. Single biochar addition affected diazotrophic community composition in rhizosphere soil, but not in the bulk soil. However, both CF and B + CF treatments obviously changed the community structure of diazotrophs in both soils. Moreover, rhizosphere effect enhanced nifH gene abundance and significantly altered the diazotrophic community structure compared to bulk soil. Phylogenetic analysis showed that all nifH sequences were affiliated to the cyanobacteria, α-, β-, γ-, and δ- subclasses of the proteobacteria group. Soil nutrient availability rather than pH had significant impacts on diazotrophic community structure based on mantel test and redundancy analysis. Overall, biochar improves the diazotrophic abundance, while chemical fertilization negatively affects it by altering nutrient availability, and combined application of biochar and chemical fertilizer does not counteract the adverse influences of chemical fertilizer on nitrogen-fixing microorganisms.

Soil inorganic carbon dynamic change mediated by anthropogenic activities: An integrated study using meta-analysis and random forest model

Soil inorganic carbon (SIC) is an important component of the soil C reservoir, and its dynamic change is associated with global climate change. However, few studies have been conducted to quantitatively explore the response of SIC content to different anthropogenic activities and their interactions with edaphic and climatic factors as well as the relative importance of each influencing factor. Here, we addressed these knowledge gaps by combining meta-analysis and the random forest (RF) model, based on data compiled from 101 studies. The quantitative effects of anthropogenic, edaphic, and climatic factors and their interactions on SIC content were first examined using the meta-analysis method, and then the relative importance of each examined factor was further determined using the RF model. The results demonstrated that SIC content significantly increased by 6.55% and 9.25% for cultivation and land use change, respectively, compared with that of the control, regardless of any influencing factors. Moreover, the grand mean changes in SIC content due to anthropogenic activities were found to be greatly affected by varied climatic, edaphic, and practical factors. In addition, the relative importance of each factor examined was ordered as follows: pH (18.2%) > soil type (16.4%) > mean annual precipitation (16.3%) > bulk density (15.2%) > soil depth (13.4%) > mean annual temperature (13.0%) > land use type (7.52%). Our study suggests that a combination of meta-analysis and RF model is a powerful method for systematically exploring dynamic changes in SIC content.

Could microalgae offer promising options for climate action via their agri-food applications?

In 2021 the Intergovernmental Panel on Climate Change (IPCC) issued the first volume of its latest authoritative report on climate change. Underlining the seriousness of the situation, the United Nations Secretary-General branded its findings a “code red for humanity.” The need for climate action is now evident, but finding viable pathways forward can be elusive. Microalgae have been attracting attention as a category of “future food,” with species like Arthrospira platensis (spirulina) and Chlorella vulgaris (chlorella) seeing growing uptake by consumers while research interest continues to expand. One timely but neglected question is whether microalgae might offer options for promising climate actions via their agri-food applications. Specifically, might they offer scope to help secure food supplies, while also providing climate resilient livelihood pathways for vulnerable farmers already grappling with food insecurity and environmental degradation? This paper reports on a review of the academic literature on microalgae as an agri-food technology, notably their uses as a food, feed, biofertilizer, biostimulant, and biochar. This family of applications was found to offer promising climate actions vis-à-vis both mitigating and adapting to climate change. Aspects pertinent to adaptation include growing rapidly under controlled conditions, reusing water, providing potent nutrition for humans and animals, and supporting resilient crop production. Agri-food applications of microalgae also provide opportunities to mitigate climate change that could be explored. The paper concludes by flagging possible risks and obstacles as well as research and policy priorities to elaborate and harness this potential.

Bacterial Diversity and Potential Functions in Response to Long-Term Nitrogen Fertilizer on the Semiarid Loess Plateau

Bacterial diversity and its functions are essential to soil health. N fertilization changes bacterial communities and interferes with the soil biogeochemical N cycle. In this study, bacterial community and soil physicochemical properties were studied in 2018 after applying N fertilizers (0, 52.5, 105, 157.5, and 210 kg N ha⁻¹) for a long (2003–2018) and a short (2003–2004) duration in a wheat field on the Loess Plateau of China. Soil bacteria were determined using 16S rRNA Illumina-MiSeq^®, and the prediction function was analyzed through PICRUSt. The study showed that N fertilizer significantly changed the diversity and abundance of bacterial communities. The phyla Proteobacteria, Actinobacteria, Acidobacteria, and Chloroflexi were most abundant, accounting for 74–80% of the bacterial community abundance. The optimum rates of N fertilizer application (N105) maintain soil health by promoting soil microbial diversity and abundance. The bacterial population abundance was higher after short-term N application than after N application for a long duration and lowest with the high N-fertilizer treatment (N210). High N enrichment led to more heterotrophic N-fixing microorganisms (Alphaproteobacteria), in which metabolism and genetic information processing dominated, while cellular processes, genetic information processing, metabolism, and organismal systems were the main functional categories under low N. The phyla Gemmatimonadetes, Actinobacteria, Bacteroidetes, and Chloroflexi were the key bacteria in the co-occurrence network. The genus Saccharimonadales of the superphylum Patescibacteria has a more significant impact under low N treatment. Long-term N fertilization affected the soil pH, NO₃-N, and other physicochemical properties, and soil NO₃-N was the highest indicator, contributing 81% of the bacterial community function under different N fertilizer treatments.

Overfertilization reduces tomato yield under long-term continuous cropping system via regulation of soil microbial community composition

Long-term monoculture cropping and overfertilization degrade soil fertility, which reduces crop growth and promotes the development of soil-borne diseases. However, it remains unclear what the temporal effects of the above factors are on the tomato yield and microbial community structure. Thus, a greenhouse experiment with different amounts of fertilization [2,196 kg ha⁻¹ (control) and 6,588 kg ha⁻¹ (overfertilization) of inorganic fertilizers (NPK)] was carried out with the soils used previously for 1, 2, and 12 years under monoculture of tomato. A 12-year overfertilization decreased soil pH by 1.37 units. Soil electrical conductivity (EC) and concentrations of soil nutrients are enhanced with the increase in tomato cropping duration. Higher content of soil nutrients was found under overfertilization compared to the control in the 12-year soil. Overfertilization decreased the activity of β-1,4-glucosidase (BG) and oxidase compared to the control in the 12-year soil. Bacterial diversity and richness decreased by 6 and 31%, respectively, under overfertilization in 12-year soil compared to the control. The relative abundance of Gemmatimonas and Gp6 in 12-year soil under overfertilization was 17 and 78%, respectively, lower than in control soil. Soil pH and total carbon (TC) were the major factors explaining changes in microbial composition. A 38% decrease in yield was caused by overfertilization in 12-year soil compared to the control. Microbial community composition was the main factor that moderated tomato yield. In addition, fertilization rather than cropping duration had a greater impact on tomato yield. Therefore, our results suggest that long-term overfertilization influenced soil pH, soil TC, and soil microbial community composition to regulate tomato yield.

Continuously applying compost for three years alleviated soil acidity and heavy metal bioavailability in a soil-asparagus lettuce system

Soil acidification and heavy metal pollution are two common barrier factors threatening plant growth and agro-product quality. Applying manure compost is promising to alleviate soil acidity, while it may increase heavy metal accumulation in soil. In a 3-year field experiment, compost was applied for 12 consecutive harvest seasons at 15, 30, and 45 t ha^-1 in a slightly acidic soil. Samples were taken at the twelfth season to examine the changes of soil properties, vegetable productivity, heavy metal accumulation and bioavailability in the soil-asparagus lettuce system. The results showed that the pH values of the topsoil were increased by 0.49-0.75 units in compost added soils compared with no compost control, soil organic matter (SOM) contents and cation exchange capacity (CEC) were increased by 34-101% and 43-44%, respectively. The soil nutrient contents were also increased in compost treatments. Continuously applying compost increased Cd, Cu, and Zn concentrations in topsoil by up to 32, 20, and 22% and decreased Pb by 10%, while soil available Cd and Zn concentrations were reduced by up to 54 and 86%, and available Cu was increased by 19-63%. The biomass of asparagus lettuce was increased by 30-59% in compost treatments, with Cd and Zn concentrations in the plant tissues reduced by 28-50% and 14-67%. Cu concentrations in the lettuce shoots were increased by 20-39%. The concentration factor and total uptake of Cd and Zn in lettuce were effectively reduced in compost treatments. Cd was more prone to be taken up, translocated and accumulated from soil to the lettuce plant than the other heavy metals. Continuously applying compost over 3 years increased soil pH, SOM, CEC, nutrient contents, and lettuce productivity, decreased Cd and Zn bioavailability in the soil-lettuce system, while posing a risk of increasing heavy metal accumulation in topsoil.

Effects of oyster shell powder on leaching characteristics of nutrients in low-fertility latosol in South China

In this study, we analyzed the effect of oyster shell powder of different proportions on the nutrient leaching characteristics of latosol using an indoor soil column simulation test. Based on the optimized fertilizer application amount, we assessed five different amounts of oyster shell powder (0% (control, CK), 0.1% (T1), 0.2% (T2), 0.4% (T3), and 0.8% (T4)) and analyzed the intermittent and dynamic leaching characteristics of nutrients in the soil samples. The results indicated that the loss of nutrients in urea, superphosphate, and potassium chloride (due to leaching) increased linearly with the amount of fertilizer. By adding oyster shell powder, the leaching loss reduced by 23.90-57.25% for ammonium nitrogen, 6.31-10.07% for phosphorus, and 17.08-26.58% for potassium. However, the leaching loss for nitrate nitrogen increased by 2.5-5.8 times. In addition, the application of oyster shell powder to latosol provided acid adjustment and water retention enhancement, which increased the pH value of the soil by 3.77 (from pH 4.15 to 7.92) and reduced water loss by 2.52%. Thus, the application of oyster shell powder can reduce the acidity of the surface soil and retain water and fertilizer to a certain extent.

Integrating life cycle assessment and a farmer survey of management practices to study environmental impacts of peach production in Beijing, China

While intensive peach production has expanded rapidly in recent years, few studies have explored the environmental impacts associated with specific regional systems or the optimal management strategies to minimize associated environmental risks. Here, data from a survey of 290 native farmers were used to conduct a life cycle assessment to quantify the acidification potential (AP), global warming potential (GWP), eutrophication potential (EP), and reactive nitrogen (Nr) losses in peach production in Pinggu District, Beijing. Total annual Nr losses, and GWP, AP, and EP values for peach production in Pinggu District were respectively 10.7 kg N t^-1, 857 kg CO₂-eq t^-1, 12.9 kg SO₂-eq t^-1, and 4.1 kg PO₄-eq t^-1. The principal driving factors were fertilizer production, transportation, and application, which together accounted for 94%, 67%, 75%, and 94% of Nr losses, GWP, AP, and EP, respectively. In the high yield, high nitrogen-use efficiency (HH) group, relative values of Nr losses, GWP, AP, and EP were respectively 33%, 25%, 39%, and 32% lower than the overall averages for 290 orchards. Further analyses indicate that improved farming practices such as decreasing application rates of fertilizers, increasing proportion of base fertilization rate, and proper fertilization frequency in the HH group were the main reasons for these orchards' better performance in peach yields and partial factor productivity of nitrogen fertilizer, and their reduced environmental impacts. These results highlight the need to optimize nutrient management in peach production in order simultaneously to realize both environmental sustainability and high productivity in the peach production system.

Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat

The ankyrin-transmembrane (ANKTM) subfamily is the most abundant subgroup of the ANK superfamily, with critical roles in pathogen defense. However, the function of ANKTM proteins in wheat immunity remains largely unexplored. Here, a total of 381 ANKTMs were identified from five Triticeae species and Arabidopsis, constituting five classes. Among them, class a only contains proteins from Triticeae species and the number of ANKTM in class a of wheat is significantly larger than expected, even after consideration of the ploidy level. Tandem duplication analysis of ANKTM indicates that Triticum urartu, Triticum dicoccoides and wheat all had experienced tandem duplication events which in wheat-produced ANKTM genes all clustered in class a. The above suggests that not only did the genome polyploidization result in the increase of ANKTM gene number, but that tandem duplication is also a mechanism for the expansion of this subfamily. Micro-collinearity analysis of Triticeae ANKTMs indicates that some ANKTM type genes evolved into other types of ANKs in the evolution process. Public RNA-seq data showed that most of the genes in class d and class e are expressed, and some of them show differential responses to biotic stresses. Furthermore, qRT-PCR results showed that some ANKTMs in class d and class e responded to powdery mildew. Silencing of TaANKTM2A-5 by barley stripe mosaic virus-induced gene silencing compromised powdery mildew resistance in common wheat Bainongaikang58. Findings in this study not only help to understand the evolutionary process of ANKTM genes, but also form the basis for exploring disease resistance genes in the ANKTM gene family.

Pomelo Green Production on Acidic Soil: Reduce Traditional Fertilizers, but Do Not Ignore Magnesium

Orchards in acid soils are at risk of magnesium (Mg) deficiency which negatively affects the plant growth, yield, and quality. However, the impacts of Mg supplementation on fruit yield, quality, and environmental and economic benefits have only been rarely addressed. We conducted 15 pomelo (Citrus grandis L.) orchard trials in South China to assess more efficient integrated nutrient management (INM) practices, including local farmer fertilization practices (FP; average application rate of nitrogen, phosphorus, and potassium were 1,075 kg N ha−1, 826 kg P2O5 ha−1, and 948 kg K2O ha−1, respectively), optimum fertilization practice (OPT; average application rate of nitrogen, phosphorus, and potassium were 550 kg N ha−1, 295 kg P2O5 ha−1, and 498 kg K2O ha−1, respectively) and optimum fertilization supplemented with Mg (OPT+Mg; average application rate of Mg was 196 kg MgO ha−1). The results showed that the yield, total soluble solid-to-titratable acidity ratio, and economic benefits under OPT practice were not significantly different from those of FP, while those of OPT+Mg were significantly higher than those of FP, by 8.76, 8.79, and 15.00%, respectively, while titratable acidity contents were significantly lower by 7.35%. In addition, compared with those from FP, the energy inputs and greenhouse gas (GHG) emissions from OPT were 31.00 and 26.48% lower, and those from OPT+Mg were 26.71 and 23.40% lower, respectively. Compared with those of OPT, the marginal efficiency of energy, GHG emissions, and capital of Mg under OPT+Mg were reduced by 62.30, 44.19, and 21.07%, respectively. Overall, adopting OPT+Mg for pomelo production could further enhance yield, fruit quality, and economic benefits while reducing the environmental burdens.

The exacerbation of soil acidification correlates with structural and functional succession of the soil microbiome upon agricultural intensification

Agricultural intensification driven by land-use changes has caused continuous and cumulative soil acidification (SA) throughout the global agroecosystem. Microorganisms mediate acid-generating reactions; however, the microbial mechanisms responsible for exacerbating SA feedback remain largely unknown. To determine the microbial community composition and putative function associated with SA, we conducted a metagenomic analysis of soils across a chronosequence that has elapsed since the conversion of rice-wheat (RW) to rice-vegetable (RV) rotations. Compared to RW rotations, soil pH decreased by 0.50 and 1.56 units (p < 0.05) in response to 10-year and 20-year RV rotations, respectively. Additionally, acid saturation ratios were increased by 7.3% and 36.2% (p < 0.05), respectively. The loss of microbial beta-diversity was a key element that contributed to the exacerbation of SA in the RV. Notably, the 20-year RV-enriched microbial taxa were more hydrogen (H⁺)-, aluminium (Al³⁺)-, and nitrate nitrogen (NO₃^--N) -dependent and contained more genera exhibiting dehydrogenation functions than did RW-enriched taxa. "M00115, M00151, M00417, and M00004" and "M00531 and M00135" that are the "proton-pumping" and "proton-consuming" gene modules, respectively, were linked to the massive recruitment of acid-dependent biomarkers in 20-year RV soils, particularly Rhodanobacter, Gemmatirosa, Sphingomonas, and Streptomyces. Collectively, soils in long-term RV rotations were highly acidified and acid-sensitive, as the enrichment of microbial dehydrogenation genes allowing for soil buffering capacity is more vulnerable to H⁺ loading and consequently promotes the colonization of more acid-tolerant and acidogenic microbes, and ultimately provide new clues for researchers to elucidate the interaction between SA and the soil microbiome.

Influence of soil properties on cadmium accumulation in vegetables: Thresholds, prediction and pathway models based on big data

Soil properties, such as soil pH, soil organic matter (SOM), cation exchange capacity (CEC), are the most important factors affecting cadmium (Cd) accumulation in vegetables. In this study, we conducted big data mining of 31,342 soil and vegetable samples to examine the influence of soil properties (soil pH, SOM, CEC, Zn and Mn content) on the accumulation of Cd in root, solanaceous, and leafy vegetables in Hunan Province, China. Specifically, the Cd accumulation capability was in the following order: leafy vegetables > root vegetables > solanaceous vegetables. The soil property thresholds for safety production in vegetables were determined by establishing nonlinear models between Cd bioaccumulation factor (BCF) and the individual soil property, and were 6.5 (pH), 30.0 g/kg (SOM), 13.0 cmol/kg (CEC), 100-140 mg/kg (Zn), and 300-400 mg/kg (Mn). When soil property values were higher than the thresholds, Cd accumulation in vegetables tended to be stable. Prediction models showed that pH and soil Zn were the leading factors influencing Cd accumulation in root vegetables, explaining 87% of the variance; pH, SOM, soil Zn and Mn explained 68% of the variance in solanaceous vegetables; pH and SOM were the main contributors in leafy vegetables, explaining 65% of the variance. Further, variance partitioning analysis (VPA) revealed that the interaction effect of the corresponding key soil properties contributed mostly to BCF. Meanwhile, partial least squares (PLS) path modeling was employed to analyze the path and the interactive effects of soil properties on Cd BCF. pH and SOM were found to be the biggest two players affecting BCF in PLS-models, and the most substantial interactive influence paths of soil properties on BCF were different among the three types of vegetables.

Drip Fertigation with Relatively Low Water and N Input Achieved Higher Grain Yield of Maize by Improving Pre- and Post-Silking Dry Matter Accumulation

Appropriate irrigation and nitrogen (N) management strategies are necessary to achieve a sustainable yield of maize with relatively low water and N inputs. Here, a 2-year field experiment with two irrigation methods (drip irrigation and flood irrigation) and five N application rates (0, 225, 300, 375, and 450 kg N ha−1) was conducted to evaluate maize yield and water and N use efficiency in the North China Plain (NCP). Compared with flood fertigation (FF), drip fertigation (DF) improved the soil water content (SWC) in the 0 to 40 cm soil layer and maintained a greater soil mineral N content (Nmin) of that soil layer. This resulted in increased soil Nmin in the 0 to 40 cm soil layer for the 375 kg ha−1 (N3) under DF compared with the 450 kg N ha−1 (N4) treatment under FF during both pre- and post-silking of maize. The maize crop accumulated greater N at both pre- and post-silking compared using N3 under DF compared to N4 under FF. Greater pre-silking N accumulation increased both leaf area and plant growth rate, leading to more dry matter (DM) accumulation and develop more kernels, while sufficient post-silking N accumulation maintained high leaf area to produce more DM post-silking and promote maize ability to support grain filling. As a result, maximum maize yield (10.4 Mg ha−1) was achieved due to increased kernel number and kernel weight for N3 (375 kg N ha−1) under DF with a 20% reduction in N fertilizer input compared with the N4 (450 kg N ha−1) treatment under FF. Due to greater grain yield and N uptake and less water consumption, the agronomic N efficiency (AEN), N partial factor productivity (PFPN), water use efficiency (WUE) and net income for the N3 treatment under DF increased by 30.4%, 28.6%, 58.3% and 11.0% averaged over two years, respectively, compared to the N4 treatment under FF. Therefore, drip fertilization could improve maize grain yield with a relatively lower water consumption and N application rate compared with flood irrigation with higher N fertilization, as well as increase the economic benefits.

Soil acidification and loss of base cations in a subtropical agricultural watershed

Soil acidification along with base cations loss degrades soil quality and is a major environmental problem, especially in agroecosystems with extensive nitrogen (N) fertilization. So far, the rates of proton (H⁺) production and real soil acidification (loss of base cations) remain unclear in subtropical agricultural watersheds. To assess the current status and future risk of soil acidification in subtropical red soil region of China, a two-year monitoring was conducted in a typical agricultural watershed with upland, paddy fields, and orchards where high N fertilizers are applied (320 kg N ha^-1 yr^-1). H⁺ production, neutralization and base cations losses were quantified based on the inputs (rainwater, inflow of water, and fertilizer) and outputs (outflow of water, groundwater drainage, and plant uptake) of major elements (K⁺, Ca²⁺, Na⁺, Mg²⁺, Al³⁺, NH₄⁺, NO₃^-, SO₄^2-, Cl^-, and H⁺). The result showed that total H⁺ production in the watershed was 5152 mol_c ha^-1 yr^-1. N transformation was the most important H⁺ source (68%), followed by excess plant uptake of cations (25%) and H⁺ deposition (7%). Base cations exchange and weathering of minerals (3842 mol_c ha^-1 yr^-1) dominated H⁺ neutralization, followed by SO₄^2- adsorption (1081 mol_c ha^-1 yr^-1), while H⁺ and Al³⁺ leaching amounted to 431 mol_c ha^-1 yr^-1, only. These results state clearly that despite significant soil acidification, the acidification of surface waters is minor, implying that soils have buffered substantially the net H⁺ addition. As a result of soil buffering, there was abundant loss of base cations, whose rate is significantly higher than the previously reported weathering rate of minerals in red soils (3842 vs 230-1080 mol_c ha^-1 yr^-1). This suggests that the pool of exchangeable base cations is being depleted in the watershed, increasing the vulnerability of the watershed, and posing a serious threat to future recovery of soils from acidification.

Effect of Bradyrhizobium japonicum Strains and Inorganic Nitrogen Fertilizer on the Growth and Yield of Bambara Groundnut (Vigna subterranea (L.) Verdc) Accessions

This study was set up to compare the inoculation of Bradyrhizobium japonicum strains and the application of nitrogen (N) fertilizers (urea with 46% nitrogen) on the growth and yield of Bambara groundnut accessions. The study results suggest that the benefits of Bradyrhizobium japonicum (B. japonicum) strain inoculation are greater and that the strain could reduce reliance and the excess amount spent by farmers to procure inorganic fertilizers and avoid the negative effect of N fertilizer on the environment after its use. Field studies were conducted in two different geographical locations, in Ibadan (Ib) and Ikenne (Ik), Nigeria, during the rainy season between August and December in 2019 and 2020. The experiment was arranged in a randomized complete block design (RCBD) in both locations and seasons and was replicated three times, with each block representing each replicate. It had a 10 × 6 factorial arrangement with one block holding the 10 accessions of Bambara groundnut inoculated with four B. japonicum strains. The second block had N fertilizer application and the third control block was without inoculation or fertilizer application. The 10 accessions of Bambara groundnut used in the study were as follows: TVSu-378, TVSu-506, TVSu-787, TVSu-1606, TVSu-1698, TVSu-1739, TVSu-710, TVSu-365, TVSu-475, and TVSu-305. Six seeds of each accession were coated with each of the four B. japonicum strains, namely, FA3, USDA110, IRJ2180A, and RACA6, before planting them in the field in both locations during the rainy season. In the next block, urea as N fertilizer (46% nitrogen) was applied to the uninoculated seedlings of accessions of Bambara groundnut 2 weeks after planting (WAP). The third block was the control with zero inoculation and zero fertilizer application. Data collected were subjected to an analysis of variance and mean and were separated using Duncan's Multiple Range Test (DMRT) at a p &gt; 0.05 level of probability. It was found that FA3 inoculation significantly enhanced the growth traits of the accessions than other strains and N fertilizer application. In both locations and seasons, at 7 weeks after planting (WAP) and 12 WAP, plant height (19.54 and 22.71 cm), number of branches (33.63 and 62.77), number of leaves (116.54 and 209.25), terminal leaf length (5.62 and 6.00 cm), and width (2.09 and 2.56 cm) were recorded. The yield and yield components recorded at harvest were as follows: pod length (13.27 cm), pod width (9.08 mm), seed length (9.39 mm), seed width (6.92 mm), weight of 100 seeds (56.85 g), and yield/ha (750.72 kg). The yield and yield components were also significantly influenced by the inoculation of FA3 and RACA6 than other inoculated strains and N fertilizer application in both locations and seasons.

Fertilization Practices: Optimization in Greenhouse Vegetable Cultivation with Different Planting Years

Cucumber plant growth and the fate of N in the plant-soil system are influenced by fertilization practices, the strengths of which may vary among soils. Three soils with different years of greenhouse vegetable cultivation (0, 2, and 18 years) were fertilized differently (CK, no N fertilizer applied; CF, chemical NPK fertilizers applied; RCF, reduced chemical NPK fertilizers applied, with N, P, and K reduced by 46.5%, 68.6%, and 54.7%; RCF+CM, 75% of the total N derived from chemical fertilizer and the rest from chicken manure in the case of reduced fertilization) in a pot experiment to study the changes in cucumber (Cucumis sativus L.) growth, N uptake, residue, and losses. The original N in soil was insufficient to maintain leaf growth and chlorophyll synthesis at later growth stages, even in soil with 18 years of greenhouse vegetable cultivation, where the original N content was the highest (total N 1.73 g kg−1). However, the CF treatment with excessive N fertilization inhibited leaf growth at the early growing stage and accelerated leaf senescence later, especially in soil with longer years of greenhouse vegetable cultivation. Therefore, reduced fertilizer application (RCF and RCF+CM) is appropriate to improve cucumber growth and productivity in greenhouse cultivation with different planting years. Although the same amount of N was applied, the RCF+CM treatment performed better than the RCF treatment in terms of increasing plant N uptake (by 30.5%) and soil N pool storage (by 25.0%) while decreasing N losses (by 16.6%) in soil with 0 years of greenhouse vegetable cultivation. In soil with 2 and 18 years of greenhouse vegetable cultivation, the soil itself functions much better in exogenous N retention and supply, with the N storage and losses not significantly different between the RCF and RCF+CM treatments. We conclude that reduced fertilization with the co-application of chicken manure is optimal for plant growth promotion, output-input ratio increase, soil N fertility improvement, and environmental risk mitigation.

Influence of Rice Husk Biochar and Lime in Reducing Phosphorus Application Rate in Acid Soil: A Field Trial with Maize

Biochar has been suggested for application in acidic soils for increasing agricultural productivity, as it may result in the benefits of sustainable carbon offset into soils and of increasing soil fertility improvement. However, the role of biochar in enhancing nutrient bioavailability and plant performance is manifested through the complex interactions of biochar-soil-plant. Moreover, it is not yet known how a crop-residue-derived biochar would perform in acidic soil when applied with a reduced rate of lime and phosphorus. Here, we examined the performance of maize with different combinations of biochar, lime, and phosphorus (P) application rates under field conditions. Specifically, rice husk biochar (10 t ha−1) was applied with 75% of the required lime and three rates of phosphorus fertilizer (100%, 75%, and 50%). The results showed that incorporation of biochar and lime, irrespective of the rates of P application, significantly increased soil nutrient (nitrogen and P) availability, while aluminum (Al) and iron (Fe) concentrations in soil were reduced. Furthermore, when biochar was combined with a lower amount of lime (75% of the recommended amount) and half of the required P, maize production increased by 62.38% compared to the control. Similarly, nutrient uptake in plants increased significantly in the same treatment (e.g., P uptake increased by 231.88%). However, soil respiration (CO2 emission) increased with lime only and the combined application of lime with biochar compared to the control; these treatments resulted in a higher carbon loss, as CO2 from the soil (84.94% and 67.50% from only lime treatment (T2), and rice husk biochar (RHB) and lime with 50% triple superphosphate (TSP) (T5), respectively). Overall, our findings imply that biochar application may sustain productivity in acid soils even when lime and P fertilizer applications are made at a reduced rate.

Variation of soil bacterial communities in a chronosequence of citrus orchard

Purpose

Soil microorganisms are vital for soil ecosystems through bioconversion of soil nutrients and maintenance of soil fertility to promoting the growth and development of citrus. However, understanding of how different planting years affect the soil bacterial community structures as related to nutrient availability in citrus orchards is limited.

Methods

Here, Illumina MiSeq technology was used to investigate changes in bacterial community structures with different ages of citrus orchards that were 2, 5, 10, 15, and 18 years old.

Results

The data showed that (1) soil bacterial community structures changed over the different growth stages of citrus orchards. With the extension of plantation age, the microbial diversity of citrus orchards increased gradually so that it was highest in 10-year-old citrus plantations but then decreased where the diversity of 18-year-old citrus ages was significantly lower than that of 10 and 15-year-old ones. Proteobacteria, Actinobacteria, Acidobacteria, and Chloroflexi were the four dominant phyla in soil of citrus orchards, accounting for 30.85%, 24.89%, 14.27%, and 14.05% of the total soil bacterial communities, respectively. (2) Soil bacterial community structures in different succession stages were affected by soil pH and nutrients, in particular available potassium (AK).

Conclusion

This study advances the understanding of soil microbiota of orchards and their interactions related to environmental factors in citrus orchard, which will improve our ability to promote the function of soil bacteria, so as to improve soil pH and reduce potassium (K) fertilizer input and improve the fruit quality.

Vulnerability and driving factors of soil inorganic carbon stocks in Chinese croplands

The long-term stability of soil inorganic carbon (SIC) and its minimum contribution towards global C cycle has been challenged, as recent studies have showed rapid decreases in SIC stocks in intensive agricultural systems. However, the extent of SIC losses and its driving factors remains unclear. Here, we compared changes in SIC density (SICD) in Chinese croplands between the 1980s and 2010s. The SIC contents in 1980s were obtained from second national soil survey (n = 949) and published studies (n = 47). The SIC contents in 2010s were based on resampling of soil profiles from the same locations during 2019 and 2020 (n = 30), as well as data from published studies and national soil survey (n = 903). We found that Chinese croplands have lost 27-38% of SICD from the 0-40 cm soil layer and that the soil pH has decreased by 0.53 units over the past 30 years. These SIC losses increased with the ratio of precipitation (P) to potential evapotranspiration (PET) and most notably with nitrogen (N) fertilization. The SICD decreased greatly in humid and semiarid regions, and these losses were enhanced by high N fertilization rates; however, the SICD increased in very arid regions. This analysis demonstrates that the water balance and N fertilization are major drivers leading to dramatic losses of SICD in croplands and, consequently, to decreases in soil fertility and functions.

The influence of soil acidification on N2O emissions derived from fungal and bacterial denitrification using dual isotopocule mapping and acetylene inhibition

Denitrification, as both origins and sinks of N₂O, occurs extensively, and is of critical importance for regulating N₂O emissions in acidified soils. However, whether soil acidification stimulates N₂O emissions, and if so for what reason contributes to stimulate the emissions is uncertain and how the N₂O fractions from fungal (f_fD) and bacterial (f_bD) denitrification change with soil pH is unclear. Thus, a pH gradient (6.2, 7.1, 8.7) was set via manipulating cropland soils (initial pH 8.7) in North China to illustrate the effect of soil acidification on fungal and bacterial denitrification after the addition of KNO₃ and glucose. For source partitioning, we used and compared SP/δ¹⁸O mapping approach (SP/δ¹⁸O MAP) and acetylene inhibition technique combined isotope two endmember mixing model (AIT-IEM). The results showed significantly higher N₂O emissions in the acidified soils (pH 6.2 and pH 7.1) compared with the initial soil (pH 8.7). The cumulative N₂O emissions during the whole incubation period (15 days) ranged from 7.1 mg N kg^-1 for pH 8.7-18.9 mg N kg^-1 for pH 6.2. With the addition of glucose, relative to treatments without glucose, this emission also increased with the decrement of pH values, and were significantly stimulated. Similarly, the highest N₂O emissions and N₂O/(N₂O + N₂) ratios (rN₂O) were observed in the pH 6.2 treatment. But the difference was the highest cumulative N₂O + N₂ emissions, which were recorded in the pH 7.1 treatment based on SP/δ¹⁸O MAP. Based on both approaches, f_fD values slightly increased with the acidification of soil, and bacterial denitrification was the dominant pathway in all treatments. The SP/δ¹⁸O MAP data indicated that both the rN₂O and f_fD were lower compared to AIT-IEM. It has been known for long that low pH may lead to high rN₂O of denitrification and f_fD, but our documentation of a pervasive pH-control of rN₂O and f_fD by utilizing combined SP/δ¹⁸O MAP and AIT-IEM is new. The results of the evaluated N₂O emissions by acidified soils are finely explained by high rN₂O and enhanced f_fD. We argue that soil pH management should be high on the agenda for mitigating N₂O emissions in the future, particularly for regions where long-term excessive nitrogen fertilizer is likely to acidify the soils.

Unraveling Nitrogen Fixing Potential of Endophytic Diazotrophs of Different Saccharum Species for Sustainable Sugarcane Growth

Sugarcane (Saccharum officinarum L.) is one of the world’s highly significant commercial crops. The amounts of synthetic nitrogen (N₂) fertilizer required to grow the sugarcane plant at its initial growth stages are higher, which increases the production costs and adverse environmental consequences globally. To combat this issue, sustainable environmental and economic concerns among researchers are necessary. The endophytic diazotrophs can offer significant amounts of nitrogen to crops through the biological nitrogen fixation mediated nif gene. The nifH gene is the most extensively utilized molecular marker in nature for studying N₂ fixing microbiomes. The present research intended to determine the existence of novel endophytic diazotrophs through culturable and unculturable bacterial communities (EDBCs). The EDBCs of different tissues (root, stem, and leaf) of five sugarcane cultivars (Saccharum officinarum L. cv. Badila, S. barberi Jesw.cv Pansahi, S. robustum, S. spontaneum, and S. sinense Roxb.cv Uba) were isolated and molecularly characterized to evaluate N₂ fixation ability. The diversity of EDBCs was observed based on nifH gene Illumina MiSeq sequencing and a culturable approach. In this study, 319766 operational taxonomic units (OTUs) were identified from 15 samples. The minimum number of OTUs was recorded in leaf tissues of S. robustum and maximum reads in root tissues of S. spontaneum. These data were assessed to ascertain the structure, diversity, abundance, and relationship between the microbial community. A total of 40 bacterial families with 58 genera were detected in different sugarcane species. Bacterial communities exhibited substantially different alpha and beta diversity. In total, 16 out of 20 genera showed potent N₂-fixation in sugarcane and other crops. According to principal component analysis (PCA) and hierarchical clustering (Bray–Curtis dis) evaluation of OTUs, bacterial microbiomes associated with root tissues differed significantly from stem and leaf tissues of sugarcane. Significant differences often were observed in EDBCs among the sugarcane tissues. We tracked and validated the plethora of individual phylum strains and assessed their nitrogenase activity with a culture-dependent technique. The current work illustrated the significant and novel results of many uncharted endophytic microbial communities in different tissues of sugarcane species, which provides an experimental system to evaluate the biological nitrogen fixation (BNF) mechanism in sugarcane. The novel endophytic microbial communities with N₂-fixation ability play a remarkable and promising role in sustainable agriculture production.

Mycorrhizal fungi alleviate acidification-induced phosphorus limitation: Evidence from a decade-long field experiment of simulated acid deposition in a tropical forest in south China

South China has been experiencing very high rate of acid deposition and severe soil acidification in recent decades, which has been proposed to exacerbate the regional ecosystem phosphorus (P) limitation. We conducted a 10-year field experiment of simulated acid deposition to examine how acidification impacts seasonal changes of different soil P fractions in a tropical forest with highly acidic soils in south China. As expected, acid addition significantly increased occluded P pool but reduced the other more labile P pools in the dry season. In the wet season, however, acid addition did not change microbial P, soluble P and labile organic P pools. Acid addition significantly increased exchangeable Al³⁺ and Fe³⁺ and the activation of Fe oxides in both seasons. Different from the decline of microbial abundance in the dry season, acid addition increased ectomycorrhizal fungi and its ratio to arbuscular mycorrhiza fungi in the wet season, which significantly stimulated phosphomonoesterase activities and likely promoted the dissolution of occluded P. Our results suggest that, even in already highly acidic soils, the acidification-induced P limitation could be alleviated by stimulating ectomycorrhizal fungi and phosphomonoesterase activities. The differential responses and microbial controls of seasonal soil P transformation revealed here should be implemented into ecosystem biogeochemical model for predicting plant productivity under future acid deposition scenarios.

Evaluating the Heterogeneity Effect of Fertilizer Use Intensity on Agricultural Eco-Efficiency in China: Evidence from a Panel Quantile Regression Model

Chemical fertilizer is one of the most important input factors in agricultural production, but the excessive use of fertilizer inevitably leads to the loss of agricultural eco-efficiency (AEE). Therefore, it is necessary to explore the impact of fertilizer use intensity (FUI) on AEE. However, ordinary panel regression, based on the assumption of parameter homogeneity may yield biased estimation conclusions. In this regard, a panel quantile regression model (QRM) was constructed with the provincial panel data of China from 1978–2020 to test the difference and variation of this impact under heterogeneous conditions. The model was then combined with the spatial econometric model to explore the effect of the spatial lag factor. The results are as follows: (1) The QSM has unveiled a great improvement space for AEE that remains low overall, despite displaying a rising trend; the highest AEE is in the eastern region. (2) The FUI has a significant negative effect on AEE with the rise in quantiles, this negative effect tended towards weakening overall, although it rebounded slightly; it was stronger in areas with low AEE. It is necessary to consider the heterogeneous conditions in comparison with the average treatment effect of ordinary panel econometric regressions. (3) The impact of FUI shows significant variability in different economic sub-divisions and different sub-periods. (4) After considering the spatial effect of fertilizer use, the negative influence on local AEE had a faster decay rate as the quantile rose, but could produce a positive spatial spillover effect on AEE in neighboring areas. Local governments should dynamically adjust and optimize their fertilizer reduction and efficiency improvement policies according to the level and development stage of their AEE to establish a complete regional linked agroecological cooperation mechanism.

Mutation in phcA Enhanced the Adaptation of Ralstonia solanacearum to Long-Term Acid Stress

Bacterial wilt, caused by the plant pathogen Ralstonia solanacearum, occurs more severely in acidified soil according to previous reports. However, R. solanacearum cannot grow well in acidic environments under barren nutrient culture conditions, especially when the pH is lower than 5. With the worsening acidification of farmland, further determination of how R. solanacearum adapts to the long-term acidic environment is worthwhile. In this study, experimental evolution was applied to evaluate the adaptability and mechanism of the R. solanacearum experimental population responding to long-term acid stress. We chose the CQPS-1 strain as the ancestor, and minimal medium (MM medium) with different pH values as the culture environment to simulate poor soil. After 1500 generations of serial passage experiments in pH 4.9 MM, acid-adapted experimental strains (denoted as C49 strains) were obtained, showing significantly higher growth rates than the growth rates of control experimental strains (serial passage experiment in pH 6.5 MM, denoted as C65 strains). Competition experiments showed that the competitive indices (CIs) of all selected clones from C49 strains were superior to the ancestor in acidic environment competitiveness. Based on the genome variation analysis and functional verification, we confirmed that loss of function in the phcA gene was associated with the acid fitness gain of R. solanacearum, which meant that the inactivation of the PhcA regulator caused by gene mutation mediated the population expansion of R. solanacearum when growing in an acidic stress environment. Moreover, the swimming motility of acid evolution strains and the phcA deletion mutant was significantly enhanced compared to CQPS-1. This work provided evidence for understanding the adaptive strategy of R. solanacearum to the long-term acidic environment.

Bottom-up estimates of reactive nitrogen loss from Chinese wheat production in 2014

Excessive use of synthetic nitrogen (N) for Chinese wheat production results in high loss of reactive N loss (Nr; all forms of N except N₂) into the environment, causing serious environmental issues. Quantifying Nr loss and its spatial variations therein is vital to optimize N management and mitigate loss. However, accurate, high spatial resolution estimations of Nr from wheat production are lacking due to limitations of data generation and estimation methods. Here, we applied the random forest (RF) algorithm to bottom-up N application rate data, obtained through a survey of millions of farmers, to estimate the Nr loss from wheat production in 2014. The results showed that the average total Nr loss was 52.5 kg N ha⁻¹ (range: 4.6-157.8 kg N ha⁻¹), which accounts for 26.1% of the total N applied. The hotspots for high Nr loss are the same as those high applied N, including northwestern Xinjiang, central-southern Hebei, Shandong, central-northern Jiangsu, and Hubei. Our database could guide regional N management and be used in conjunction with biogeochemical models.

Measurement(s)	reactive N loss
Technology Type(s)	random forest model
Sample Characteristic - Environment	cropland
Sample Characteristic - Location	China

Molecular and Physiological Responses of Citrus sinensis Leaves to Long-Term Low pH Revealed by RNA-Seq Integrated with Targeted Metabolomics

Low pH-induced alterations in gene expression profiles and organic acids (OA) and free amino acid (FAA) abundances were investigated in sweet orange [Citrus sinensis (L.) Osbeck cv. Xuegan] leaves. We identified 503 downregulated and 349 upregulated genes in low pH-treated leaves. Further analysis indicated that low pH impaired light reaction and carbon fixation in photosynthetic organisms, thereby lowering photosynthesis in leaves. Low pH reduced carbon and carbohydrate metabolisms, OA biosynthesis and ATP production in leaves. Low pH downregulated the biosynthesis of nitrogen compounds, proteins, and FAAs in leaves, which might be conducive to maintaining energy homeostasis during ATP deprivation. Low pH-treated leaves displayed some adaptive responses to phosphate starvation, including phosphate recycling, lipid remodeling, and phosphate transport, thus enhancing leaf acid-tolerance. Low pH upregulated the expression of some reactive oxygen species (ROS) and aldehyde detoxifying enzyme (peroxidase and superoxidase) genes and the concentrations of some antioxidants (L-tryptophan, L-proline, nicotinic acid, pantothenic acid, and pyroglutamic acid), but it impaired the pentose phosphate pathway and V_E and secondary metabolite biosynthesis and downregulated the expression of some ROS and aldehyde detoxifying enzyme (ascorbate peroxidase, aldo-keto reductase, and 2-alkenal reductase) genes and the concentrations of some antioxidants (pyridoxine and γ-aminobutyric acid), thus disturbing the balance between production and detoxification of ROS and aldehydes and causing oxidative damage to leaves.

Influence Paths and Spillover Effects of Agricultural Agglomeration on Agricultural Green Development

Analyzing the impact of agricultural industrial agglomeration (AIG) on agricultural green development (AGD) is of a great significance to realizing the sustainable and high-quality development of agriculture. Panel data of 31 provinces in China from 2009 to 2019 were analysed. For measuring efficiency, a non-parametric DEA approach in the presence of undesirable outputs, a slack-based measure (SBM) was used. From the perspective of the spatial spillover analysis and heterogeneity analysis, Moran’s I index and the Spatial Durbin Model (SDM) were used to empirically analyze the impact of AIG on AGD to alleviate conflicts between agricultural sustainable development and environmental pollution and further explore the regional heterogeneity of AIG on AGD-efficiency due to the vast territory of China. The mediation model is constructed to explore the paths of AIG affecting AGD. The results show that: (1) Chinese efficiency of AGD was raised continuously and the high efficiency was mainly located in the southeastern coastal areas. (2) AIG not only has a significant U-shaped impact on the AGD, but also has a nonlinear U-shaped spatial spillover effect in related regions, which shows that the “siphon effect” will be triggered in the early stage of AIG and the “diffusion effect” will be evoked in the later stage of AIG. (3) From the perspective of heterogeneity analysis, AIG significantly promotes the efficiency of AGD in the central region of mainland China. In the eastern region, the AIG has an inverted U-shaped effect on the efficiency of AGD from positive to negative. On the contrary, the AIG has a U-shaped impact on the efficiency of AGD from negative to positive in the western region. (4) The analysis of the mediation model plays a partial positive mediating role for AGD to persist in promoting technology innovation and increasing the speed of talent agglomeration. Accordingly, suggestions are provided to strengthen the coordination and cooperation in sustainable agricultural development among provinces, to drive the efficiency of science and technology through the scale knowledge spillover effect, and to conduct a scientific layout of agricultural industry development.

Effects of Water and Nitrogen Management on Water Productivity, Nitrogen Use Efficiency and Leaching Loss in Rice Paddies

Effective water and nitrogen (N) management strategies are critical for sustainable agricultural development. Lysimeter experiments with two deep percolation rates (low percolation and high percolation, i.e., LP and HP: 3 mm d−1 and 5 mm d−1) and five N application levels (N0~N4: 0, 60, 135, 210 and 285 kg N ha−1) were conducted to investigate the effects of controlled drainage on water productivity (WP) and N use efficiency (NUE) in water-saving irrigated paddy fields. The results demonstrated that NH4+-N and NO3−-N were the major components of total nitrogen (TN) in ponded water and leachate, accounting for more than 77.1% and 83.6% of TN, respectively. The risk of N leaching loss increased significantly under treatment of high percolation rates or high N application levels. High percolation loss required greater irrigation input, thus reducing WP. In addition, N uptake increased with increasing N application, but fertilization applied in excess of crop demand had a negative effect on grain yield. NUE was affected by the amount of N applied and increased with decreasing N levels. Water and N application levels had a significant effect on N uptake of rice, but their interaction on N uptake or NUE was not significant. For the LP and HP regimes, the highest N uptake and WP were obtained with N application levels of 285 kg ha−1 and 210 kg ha−1, respectively. Our overall results suggested that the combination of controlled drainage and water-saving irrigation was a feasible mitigation strategy to reduce N losses through subdrainage percolation and to provide more nutrients available for rice to improve NUE, thus reducing diffuse agricultural pollution. Long-term field trials are necessary to validate the lysimeter results.

Arbuscular Mycorrhiza Extraradical Mycelium Promotes Si and Mn Subcellular Redistribution in Wheat Grown under Mn Toxicity

Manganese (Mn) and aluminum (Al) toxicities are serious edaphic limitations to crop production in acidic soils. Excess Mn can be countered using a stress-adapted soil microbiota that establish symbiotic relationships with native plants. The arbuscular mycorrhizal fungi (AMF) associated with Lolium rigidum L. develop extraradical mycelia (ERM) that quickly colonize wheat and lead to greater shoot growth by promoting stress-evading mechanisms that are not yet completely explained. In the present study, wheat growth was assessed after 3 weeks on disturbed and undisturbed (intact ERM) acidic soil where the native non-mycotrophic Silene gallica L. or strongly mycotrophic L. rigidum were previously developed. The physiological and biochemical mechanisms responsible for increased growth were analyzed by assessing wheat leaf chlorophyll content, photosystem II quantum yield and performance index, enzymatic activity of ascorbate peroxidase (APX), catalase (CAT), glutathione reductase (GR), guaiacol peroxidase (GPX), superoxide dismutase (SOD) and contents and subcellular localization of Mn, Mg, Si and K. The soil from native plants had a beneficial effect on shoot weight and chlorophyll levels. The highest benefits were obtained for wheat grown in soil with intact ERM associated with L. rigidum. In this condition, where earlier mycorrhization was favored, the Mn content decreased, alongside the content of Si, while the Mg/Mn ratio increased. Mn was redirected to the apoplast, while Si was redirected to the symplast. The activity of APX, GPX and SOD increased, probably due to increased metabolic growth (higher shoot weight and chlorophyll content). Understanding the mechanisms induced by native AMF responsible for increasing wheat performance can contribute to the establishment of sustainable approaches for crop production in acidic soils with Mn toxicity. The use of native plant AMF developers can improve the sustainable use of natural resources in the scope of greener agricultural practices.

Environmental and Production Aspects of Using Fertilizers Based on Waste Elemental Sulfur and Organic Materials

Crop fertilization with sulfur is an important part of agricultural practices, as is the systematic increase in soil organic matter content. Materials of waste origin constitute a source of plant-available sulfur, as well as soil organic matter. The study was to verify the hypothesis assuming that combining waste sulfur pulp and its mixtures with organic materials enables simultaneous soil enrichment with readily available sulfur and organic matter. A 240-day incubation experiment was conducted, on two soils: very light and heavy; with two sulfur doses applied to each soil (20 and 40 mg S/kg d.m. for very light soil, and 30 and 60 mg S/kg d.m. for heavy soil). The sulfate sulfur content in the incubated soil material, treated with the addition of sulfur pulp and its mixtures with organic materials, increased significantly up to day 60 and then decreased. The application of these materials significantly increased the content of available sulfur and decreased the pH value of the incubated material. The effect of the introduced materials on dehydrogenase activity depended on soil granulometric composition (the impact of the applied materials on the activity of these enzymes in very light soil was small, and in heavy soil, their activity was usually limited by the presence of introduced materials). Application of the studied materials had little effect on the total organic carbon content in the incubated soil material (a significant change in the value of this parameter, in relation to the control soil, was recorded in some treatments of heavy soil).

Development of nitrogen efficiency screening system in alfalfa (Medicago sativa L.) and analysis of alfalfa nitrogen efficiency types

Screening high nitrogen (N) efficiency crops is crucial to utilize resources rationally and reduce N losses. In this research, the biomass, morphological and N-related parameters of 28 alfalfa (Medicago sativa L.) cultivars were assessed at seedling stage. Then, we selected representative materials to compare the changes in stem-leaf dry weight (SDW), total root length (RL) and plant N accumulation (PNA) during whole period. Lastly, we analyzed the expressions of NRT2 and AMT1 genes of alfalfa cultivars. The correlation coefficients between SDW, PDW, RL, RV, SNA, RNA, and PNA were all in the range of 0.522∼0.996. The coefficient of variations of SDW, PDW, RL, RV, SNA and PNA were all more than 20% under low and medium N levels. Though the comprehensive evaluation and cluster analysis, the comprehensive value of LW6010, Gannong NO.5, Longmu 806, Giant 2, Giant 601, Zhaodong, Crown were greater than 0.5 under low and medium N levels; the comprehensive value of Gannong NO.3, Gannong NO.4, Xinjiangdaye, Xinmu NO.1 were less than 0.5 under low N level, but were greater than 0.5 under medium N level. The comprehensive value of Gannong NO.7 Gannong NO.9, Longmu 801, Gongnong NO.3, Elite, Sadie 10, Giant 551 were greater than 0.5 under low N level, but were lesser than 0.5 under medium N level; and those of Longdong, Gannong NO.8, Gongnong NO.1, Reindee, Goldqueen, Weston, Tourists, Giant 6, Algonquin, Sadie 7 were lesser than 0.5 under low and medium N levels. Four N efficiency types of alfalfa cultivars were classified: (1) Very efficient; (2) Efficient; (3) Anti-efficient; and (4) Inefficient.The SDW, RL and PNA of LW6010 were higher than Longdong in each growth period. The expressions of NRT2 and AMT1 genes were highest for LW6010, and lowest for Longdong. So, N efficiency parameters assessed at seedling stage include: SDW, PDW, RL, RV, SNA and PNA. We developed new classification system of N efficiency types of alfalfa cultivars. It proved its effectiveness on 28 alfalfa in China.

The Application of Mixed Organic and Inorganic Fertilizers Drives Soil Nutrient and Bacterial Community Changes in Teak Plantations

Appropriate fertilization can enhance forest productivity by maintaining soil fertility and improving the structure of the bacterial community. However, there is still uncertainty surrounding the effects of combined application of organic and inorganic fertilizers on soil nutrient status and bacterial community structure. A fertilization experiment was set up in an eight-year-old teak plantation with five treatments involved: mixed organic and NPK compound fertilizers (OCF), mixed organic and phosphorus fertilizers (OPF), mixed organic, NPK and phosphorus fertilizers (OCPF), mixed NPK and phosphorus fertilizers (CPF) and no fertilization (CK). Soil chemical properties and bacterial communities were investigated, and the co-occurrence pattern of the bacterial community under different fertilization treatments was compared. The results showed that the contents of soil organic matter and nitrate nitrogen, and the soil pH values were the highest after OCPF treatment, which were 20.39%, 90.91% and 8.16% higher than CK, respectively. The richness and diversity of bacteria underwent no obvious changes, but the structure of the soil’s bacterial community was significantly altered by fertilization. Of the dominant bacteria taxa, the relative abundance increased for Gemmatimonadetes, Myxococcota, ADurb.Bin063-13 and Candidatus_Koribacter, and decreased for Chloroflexi, Proteobacteria, JG30-KF-AS9 and Acidothermus under OCPF treatment in comparison to CK. The number of nodes and edges, the average degree and the network density of bacterial community co-occurrence networks were the greatest in OCPF treatment, indicating that application of OCPF could make the network structure of soil bacteria more stable and complex. Moreover, soil pH and organic matter were significantly correlated with bacterial community structure and were considered the main influencing factors. These findings highlight that the combined application of organic, NPK and phosphorus fertilizers is highly beneficial for improving soil quality and optimizing bacterial community structure in teak plantations.

Transcriptomic analyses of sweet potato in response to Cd exposure and protective effects of K on Cd-induced physiological alterations

We aimed to understand the molecular mechanism of differential cadmium (Cd) accumulation in two cultivars of sweet potato and to clarify the effects of potassium (K) supply on Cd accumulation. Comparative transcriptomes were employed to identify key genes and pathways using a low-Cd (N88) and a high-Cd cultivar (X16) in a pot experiment. The antioxidant capacity and cell wall components of root tips were analyzed to account for the effect of K regulating Cd accumulation in N88 via a hydroponic experiment. Transcriptome analysis revealed that 29 and 20 genes were differentially expressed in N88 and X16, respectively, when comparing the control with the two Cd treatments. X16 had more differentially expressed genes (DEGs), including 2649 common up-regulated and 3173 common down-regulated than N88 in any treatment. GO and KEGG analyses showed that the DEGs were assigned and enriched in different pathways. Some critical DEGs such as PDR, HMA3, COPT5, CAX3, GAUT, CCR, AUX1, CAT, SOD, GSR, and GST were identified. The DEGs were involved in pathways including heavy metal transport or detoxification, cell wall biosynthesis, plant hormone signal transduction, and glutathione metabolism. Additionally, K supply substantially decreased Cd accumulation and reactive oxygen species production and promoted the production of cellulose, pectin and lignin in the root tips when exposed to Cd. Several critical DEGs associated with heavy metal transport and cell wall biosynthesis were responsible for the difference of Cd accumulation between the two cultivars. Application of K could help decrease Cd accumulation in sweet potato.

Physiological Essence of Magnesium in Plants and Its Widespread Deficiency in the Farming System of China

Magnesium (Mg) is an essential nutrient for a wide array of fundamental physiological and biochemical processes in plants. It largely involves chlorophyll synthesis, production, transportation, and utilization of photoassimilates, enzyme activation, and protein synthesis. As a multifaceted result of the introduction of high-yielding fertilizer-responsive cultivars, intensive cropping without replenishment of Mg, soil acidification, and exchangeable Mg (Ex-Mg) leaching, Mg has become a limiting nutrient for optimum crop production. However, little literature is available to better understand distinct responses of plants to Mg deficiency, the geographical distribution of soil Ex-Mg, and the degree of Mg deficiency. Here, we summarize the current state of knowledge of key plant responses to Mg availability and, as far as possible, highlight spatial Mg distribution and the magnitude of Mg deficiency in different cultivated regions of the world with a special focus on China. In particular, ~55% of arable lands in China are revealed Mg-deficient (< 120 mg kg-1 soil Ex-Mg), and Mg deficiency literally becomes increasingly severe from northern (227-488 mg kg-1) to southern (32-89 mg kg-1) China. Mg deficiency primarily traced back to higher depletion of soil Ex-Mg by fruits, vegetables, sugarcane, tubers, tea, and tobacco cultivated in tropical and subtropical climate zones. Further, each unit decline in soil pH from neutral reduced ~2-fold soil Ex-Mg. This article underscores the physiological importance of Mg, potential risks associated with Mg deficiency, and accordingly, to optimize fertilization strategies for higher crop productivity and better quality.