1
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Buijs N, Vlaming HC, van Haren MJ, Martin NI. Synthetic Studies with Bacitracin A and Preparation of Analogues Containing Alternative Zinc Binding Groups. Chembiochem 2022; 23:e202200547. [PMID: 36287040 PMCID: PMC10099996 DOI: 10.1002/cbic.202200547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2022] [Revised: 10/26/2022] [Indexed: 01/25/2023]
Abstract
The growing threat of drug-resistant bacteria is a global concern, highlighting the urgent need for new antibiotics and antibacterial strategies. In this light, practical synthetic access to natural product antibiotics can provide important structure-activity insights while also opening avenues for the development of novel analogues with improved properties. To this end, we report an optimised synthetic route for the preparation of the clinically used macrocyclic peptide antibiotic bacitracin. Our combined solid- and solution-phase approach addresses the problematic, and previously unreported, formation of undesired epimers associated with the stereochemically fragile N-terminal thiazoline moiety. A number of bacitracin analogues were also prepared wherein the thiazoline motif was replaced by other known zinc-binding moieties and their antibacterial activities evaluated.
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Affiliation(s)
- Ned Buijs
- Biological Chemistry Group, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Halana C Vlaming
- Biological Chemistry Group, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Matthijs J van Haren
- Biological Chemistry Group, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Nathaniel I Martin
- Biological Chemistry Group, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
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2
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Hooper AR, Oštrek A, Milian‐Lopez A, Sarlah D. Bioinspired Total Synthesis of Pyritide A2 through Pyridine Ring Synthesis. Angew Chem Int Ed Engl 2022; 61:e202212299. [PMID: 36123301 PMCID: PMC9827874 DOI: 10.1002/anie.202212299] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Indexed: 01/12/2023]
Abstract
Pyritides belong to the ribosomally synthesized and post-translationally modified peptide class of natural products that were recently genome-predicted and are structurally defined by unique pyridine-containing macrocycles. Inspired by their biosynthesis, proceeding through peptide modification and cycloaddition to form the heterocyclic core, we report the chemical synthesis of pyritide A2 involving pyridine ring synthesis from an amino acid precursor through aza-Diels-Alder reaction. This strategy permitted the preparation of the decorated pyridine core with an appended amino acid residue in two steps from a commercially available arginine derivative and secured pyritide A2 in ten steps. Moreover, the synthetic logic enables efficient preparation of different pyridine subunits associated with pyritides, allowing rapid and convergent access to this new class of natural products and analogues thereof.
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Affiliation(s)
- Annie R. Hooper
- Department of Chemistry and Carl R. Woese Institute for Genomic BiologyUniversity of Illinois at Urbana-ChampaignUrbanaIL 61801USA
| | - Andraž Oštrek
- Department of Chemistry and Carl R. Woese Institute for Genomic BiologyUniversity of Illinois at Urbana-ChampaignUrbanaIL 61801USA
- Department of ChemistryUniversity of PaviaViale Taramelli 1227100PaviaItaly
| | - Ana Milian‐Lopez
- Department of Chemistry and Carl R. Woese Institute for Genomic BiologyUniversity of Illinois at Urbana-ChampaignUrbanaIL 61801USA
| | - David Sarlah
- Department of Chemistry and Carl R. Woese Institute for Genomic BiologyUniversity of Illinois at Urbana-ChampaignUrbanaIL 61801USA
- Department of ChemistryUniversity of PaviaViale Taramelli 1227100PaviaItaly
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3
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Zhang Y, Vinogradov AA, Chang JS, Goto Y, Suga H. Solid-Phase-Based Synthesis of Lactazole-Like Thiopeptides. Org Lett 2022; 24:7894-7899. [DOI: 10.1021/acs.orglett.2c02870] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Yue Zhang
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Alexander A. Vinogradov
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Jun Shi Chang
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yuki Goto
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Hiroaki Suga
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
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4
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Cox JB, Kellum AA, Zhang Y, Li B, Smith AB. Total Synthesis of (-)-Bastimolide A: A Showcase for Type I Anion Relay Chemistry. Angew Chem Int Ed Engl 2022; 61:e202204884. [PMID: 35608327 PMCID: PMC9256807 DOI: 10.1002/anie.202204884] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Indexed: 05/31/2024]
Abstract
A highly convergent total synthesis of (-)-bastimolide A (1), a polyhydroxy antimalarial macrolide, has been achieved via a longest linear sequence of twenty steps from commercially available glycidyl ethers. Type I Anion Relay Chemistry (ARC) coupling tactics enable rapid construction of the molecule's 1,5-polylol backbone. A late-stage B-alkyl Suzuki-Miyaura union and an Evans-modified Mukaiyama macrolactonization generate the forty-membered Z-α,β-unsaturated macrocyclic lactone.
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Affiliation(s)
- Joshua B Cox
- Department of Chemistry, University of Pennsylvania, 231 S. 34th street, Philadelphia, PA 19104, USA
| | - Alex A Kellum
- Department of Chemistry, University of Pennsylvania, 231 S. 34th street, Philadelphia, PA 19104, USA
| | - Yiwen Zhang
- Department of Chemistry, University of Pennsylvania, 231 S. 34th street, Philadelphia, PA 19104, USA
| | - Bo Li
- Department of Chemistry, University of Pennsylvania, 231 S. 34th street, Philadelphia, PA 19104, USA
| | - Amos B Smith
- Department of Chemistry, University of Pennsylvania, 231 S. 34th street, Philadelphia, PA 19104, USA
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5
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Cox JB, Kellum AA, Zhang Y, Li B, Smith AB. Total Synthesis of (−)‐Bastimolide A: A Showcase for Type I Anion Relay Chemistry. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202204884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Joshua B. Cox
- Department of Chemistry University of Pennsylvania 231 S. 34th street Philadelphia PA 19104 USA
| | - Alex A. Kellum
- Department of Chemistry University of Pennsylvania 231 S. 34th street Philadelphia PA 19104 USA
| | - Yiwen Zhang
- Department of Chemistry University of Pennsylvania 231 S. 34th street Philadelphia PA 19104 USA
| | - Bo Li
- Department of Chemistry University of Pennsylvania 231 S. 34th street Philadelphia PA 19104 USA
| | - Amos B. Smith
- Department of Chemistry University of Pennsylvania 231 S. 34th street Philadelphia PA 19104 USA
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6
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Pigga JE, Rosenberger JE, Jemas A, Boyd SJ, Dmitrenko O, Xie Y, Fox JM. General, Divergent Platform for Diastereoselective Synthesis of
trans
‐Cyclooctenes with High Reactivity and Favorable Physiochemical Properties**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202101483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Jessica E. Pigga
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
| | - Julia E. Rosenberger
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
| | - Andrew Jemas
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
| | - Samantha J. Boyd
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
| | - Olga Dmitrenko
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
| | - Yixin Xie
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
| | - Joseph M. Fox
- Department of Chemistry and Biochemistry University of Delaware 163 The Green Newark DE 19716 USA
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7
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Pigga JE, Rosenberger JE, Jemas A, Boyd SJ, Dmitrenko O, Xie Y, Fox JM. General, Divergent Platform for Diastereoselective Synthesis of trans-Cyclooctenes with High Reactivity and Favorable Physiochemical Properties*. Angew Chem Int Ed Engl 2021; 60:14975-14980. [PMID: 33742526 DOI: 10.1002/anie.202101483] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 03/04/2021] [Indexed: 12/24/2022]
Abstract
trans-Cyclooctenes (TCOs) are essential partners in the fastest known bioorthogonal reactions, but current synthetic methods are limited by poor diastereoselectivity. Especially hard to access are hydrophilic TCOs with favorable physicochemical properties for live cell or in vivo experiments. Described is a new class of TCOs, "a-TCOs", prepared in high yield by stereocontrolled 1,2-additions of nucleophiles to trans-cyclooct-4-enone, which itself was prepared on a large scale in two steps from 1,5-cyclooctadiene. Computational transition-state models rationalize the diastereoselectivity of 1,2-additions to deliver a-TCO products, which were also shown to be more reactive than standard TCOs and less hydrophobic than even a trans-oxocene analogue. Illustrating the favorable physicochemical properties of a-TCOs, a fluorescent TAMRA derivative in live HeLa cells was shown to be cell-permeable through intracellular Diels-Alder chemistry and to wash out more rapidly than other TCOs.
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Affiliation(s)
- Jessica E Pigga
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
| | - Julia E Rosenberger
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
| | - Andrew Jemas
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
| | - Samantha J Boyd
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
| | - Olga Dmitrenko
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
| | - Yixin Xie
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
| | - Joseph M Fox
- Department of Chemistry and Biochemistry, University of Delaware, 163 The Green, Newark, DE, 19716, USA
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8
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Mata G, Kalnmals CA. Total Synthesis in the Trost Laboratories: Selected Milestones From the Past Twenty Years. Isr J Chem 2021. [DOI: 10.1002/ijch.202100022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Guillaume Mata
- Arcus Biosciences, Inc. 3928 Point Eden Way Hayward CA 94545 USA
| | - Christopher A. Kalnmals
- Crop Protection Discovery Corteva Agriscience 9330 Zionsville Road Indianapolis IN 46268 USA
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9
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Tresse C, François-Heude M, Servajean V, Ravinder R, Lesieur C, Geiben L, Jeanne-Julien L, Steinmetz V, Retailleau P, Roulland E, Beau JM, Norsikian S. Total Synthesis of Tiacumicin B: Study of the Challenging β-Selective Glycosylations*. Chemistry 2021; 27:5230-5239. [PMID: 33433914 DOI: 10.1002/chem.202005102] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Indexed: 11/07/2022]
Abstract
We give a full account of the total synthesis of tiacumicin B (Tcn-B), a natural glycosylated macrolide with remarkable antibiotic properties. Our strategy is based on our experience with the synthesis of the tiacumicin B aglycone and on unique 1,2-cis-glycosylation steps. We used sulfoxide anomeric leaving-groups in combination with a remote 3-O-picoloyl group on the donors that allowed highly β-selective rhamnosylation and noviosylation that rely on H-bond-mediated aglycone delivery. The rhamnosylated C1-C3 fragment was anchored to the C4-C19 aglycone fragment by a Suzuki-Miyaura cross-coupling. Ring-size-selective Shiina macrolactonization provided a semiglycosylated aglycone that was engaged directly in the noviolysation step with a virtually total β-selectivity. Finally, a novel deprotection method was devised for the removal of a 2-naphthylmethyl ether on a phenol, and efficient removal of all the protecting groups provided synthetic tiacumicin B.
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Affiliation(s)
- Cédric Tresse
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Marc François-Heude
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Vincent Servajean
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Rubal Ravinder
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Clémence Lesieur
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Lucie Geiben
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Louis Jeanne-Julien
- C-Tac, CitCom, UMR 8038, Faculté de Pharmacie, CNRS-Université de Paris, avenue de l'Observatoire 4, 75006, Paris, France
| | - Vincent Steinmetz
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Emmanuel Roulland
- C-Tac, CitCom, UMR 8038, Faculté de Pharmacie, CNRS-Université de Paris, avenue de l'Observatoire 4, 75006, Paris, France
| | - Jean-Marie Beau
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France.,Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182, Univ. Paris-Sud and CNRS, Université Paris-Saclay, 91405, Orsay, France
| | - Stéphanie Norsikian
- Institut de Chimie des Substances Naturelles, UPR 2301, CNRS Université Paris-Saclay, 91198, Gif-sur-Yvette, France
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10
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Abstract
A one-pot procedure for deprotecting carboxylic esters under nonhydrolytic conditions is described. Typical alkyl carboxylates are readily deblocked to the carboxylic acids by the action of aluminum powder and iodine in anhydrous acetonitrile. Cleavage of lactones affords the corresponding ω-iodoalkylcarboxylic acids. Aryl acetylates undergo deacetylation with the participation of the neighboring group. This method enables the selective cleavage of alkyl carboxylic esters in the presence of aryl esters.
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Affiliation(s)
- Dayong Sang
- College of Chemical Engineering and Pharmacy, Jingchu University of Technology, 33 Xiangshan Road, Jingmen, Hubei 448000, P. R. China
| | - Huaxin Yue
- College of Chemical Engineering and Pharmacy, Jingchu University of Technology, 33 Xiangshan Road, Jingmen, Hubei 448000, P. R. China
| | - Yang Fu
- College of Chemical Engineering and Pharmacy, Jingchu University of Technology, 33 Xiangshan Road, Jingmen, Hubei 448000, P. R. China
| | - Juan Tian
- College of Chemical Engineering and Pharmacy, Jingchu University of Technology, 33 Xiangshan Road, Jingmen, Hubei 448000, P. R. China
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11
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Kratena N, Gökler T, Maltrovsky L, Oburger E, Stanetty C. A Unified Approach to Phytosiderophore Natural Products. Chemistry 2021; 27:577-580. [PMID: 32897577 PMCID: PMC7821100 DOI: 10.1002/chem.202004004] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Indexed: 11/10/2022]
Abstract
This work reports on the concise total synthesis of eight natural products of the mugineic acid and avenic acid families (phytosiderophores). An innovative "east-to-west" assembly of the trimeric products resulted in a high degree of divergence enabling the formation of the final products in just 10 or 11 steps each with a minimum of overall synthetic effort. Chiral pool starting materials (l-malic acid, threonines) were employed for the outer building blocks while the middle building blocks were accessed by diastereo- and enantioselective methods. A highlight of this work consists in the straightforward preparation of epimeric hydroxyazetidine amino acids, useful building blocks on their own, enabling the first synthesis of 3''-hydroxymugineic acid and 3''-hydroxy-2'-deoxymugineic acid.
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Affiliation(s)
- Nicolas Kratena
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 91060ViennaAustria
| | - Tobias Gökler
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 91060ViennaAustria
| | - Lara Maltrovsky
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 91060ViennaAustria
| | - Eva Oburger
- Institute of Soil ResearchBOKU ViennaKonrad-Lorenz-Strasse 243430TullnAustria
| | - Christian Stanetty
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 91060ViennaAustria
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12
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Watanabe T, Abe H, Shibasaki M. Catalytic Asymmetric Total Synthesis of Leucinostatin A. CHEM REC 2020; 21:175-187. [PMID: 33107684 DOI: 10.1002/tcr.202000108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 10/05/2020] [Indexed: 12/30/2022]
Abstract
This review describes our efforts toward achieving catalytic asymmetric total synthesis of leucinostatin A, a compound that interferes with the tumor-stroma interaction. The synthesis utilizes four catalytic asymmetric reactions, including direct-type reactions exemplified by high atom-economy, and three C-C bond forming reactions. Thorough analysis of the NMR data, HPLC profiles, and biologic activity led us to unambiguously revise the absolute configuration regarding the 6-position of the AHMOD residue side chain from S (reported) to R. Other examples of previously reported important studies on the stereoselective synthesis of HyLeu and AHMOD are also described.
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Affiliation(s)
- Takumi Watanabe
- Institute of Microbial Chemistry (BIKAKEN), 3-14-23 Kamiosaki, Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Hikaru Abe
- Institute of Microbial Chemistry (BIKAKEN), 3-14-23 Kamiosaki, Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Masakatsu Shibasaki
- Institute of Microbial Chemistry (BIKAKEN), 3-14-23 Kamiosaki, Shinagawa-ku, Tokyo, 141-0021, Japan
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13
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Chen QY, Luo D, Seabra GM, Luesch H. Ahp-Cyclodepsipeptides as tunable inhibitors of human neutrophil elastase and kallikrein 7: Total synthesis of tutuilamide A, serine protease selectivity profile and comparison with lyngbyastatin 7. Bioorg Med Chem 2020; 28:115756. [PMID: 33002682 DOI: 10.1016/j.bmc.2020.115756] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 09/01/2020] [Accepted: 09/02/2020] [Indexed: 01/23/2023]
Abstract
We describe the total synthesis of tutuilamide A, a potent porcine pancreatic elastase (PPE) inhibitor and a representative member of the 3-amino-6-hydroxy-2-piperidone (Ahp) cyclodepsipeptide family, isolated from marine cyanobacteria. The Ahp unit serves as a pharmacophore and the adjacent 2-amino-2-butenoic acid (Abu) is a main driver of the selectivity among serine proteases. We adapted our previous convergent strategy to generate the macrocycle, common with lyngbyastatin 7 and related elastase inhibitors, and then appended the tutuilamide A-specific side chain bearing a vinyl chloride. Tutuilamide A and lyngbyastatin 7 were evaluated side by side for the inhibition of the disease-relevant human neutrophil elastase (HNE). Tutuilamide A and lyngbyastatin 7 were approximately equipotent against HNE, while tutuilamide A was previously shown to be more active against PPE compared with lyngbyastatin 7, further demonstrating that the side chain provides opportunities to not only modulate potency but also selectivity among proteases of the same function from different organisms. Profiling of tutuilamide A against mainly human serine proteases revealed high selectivity for HNE (IC50 0.73 nM) and pleiotropic activity against kallikrein 7 (KLK7, IC50 5.0 nM), without affecting other kallikreins, similarly to lyngbyastatin 7 (IC50 0.85 nM for HNE and 3.1 nM for KLK7). A comprehensive molecular docking study for elastases and KLK7 afforded deeper insight into the intricate differences between inhibitor interactions with HNE and PPE, accounting for the differential activities for both compounds. The synthesis and molecular studies serve as a proof-of-concept that the macrocyclic scaffold can be diversified to fine-tune the activity of serine protease inhibitors.
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Affiliation(s)
- Qi-Yin Chen
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States
| | - Danmeng Luo
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States
| | - Gustavo M Seabra
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States
| | - Hendrik Luesch
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL 32610, United States; Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, FL 32610, United States.
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14
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Grab HA, Kirsch VC, Sieber SA, Bach T. Total Synthesis of the Cyclic Depsipeptide Vioprolide D via its (Z)-Diastereoisomer. Angew Chem Int Ed Engl 2020; 59:12357-12361. [PMID: 32126146 PMCID: PMC7383572 DOI: 10.1002/anie.202002328] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Indexed: 12/15/2022]
Abstract
The first total synthesis of vioprolide D was accomplished in an overall yield of 2.0 % starting from methyl (2S)-3-benzyloxy-2-hydroxypropanoate (16 steps in the longest linear sequence). The cyclic depsipeptide was assembled from two building blocks of similar size and complexity in a modular, highly convergent approach. Peptide bond formation at the C-terminal dehydrobutyrine amino acid of the northern fragment was possible via its (Z)-diastereoisomer. After macrolactamization and formation of the thiazoline ring, the (Z)-double bond of the dehydrobutyrine unit was isomerized to the (E)-double bond of the natural product. The cytotoxicity of vioprolide D is significantly higher than that of its (Z)-diastereoisomer.
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Affiliation(s)
- Hanusch A. Grab
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
| | - Volker C. Kirsch
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
| | - Stephan A. Sieber
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
| | - Thorsten Bach
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
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15
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Syga Ł, de Vries RH, van Oosterhout H, Bartelds R, Boersma AJ, Roelfes G, Poolman B. A Trifunctional Linker for Palmitoylation and Peptide and Protein Localization in Biological Membranes. Chembiochem 2020; 21:1320-1328. [PMID: 31814256 PMCID: PMC7317724 DOI: 10.1002/cbic.201900655] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Indexed: 01/09/2023]
Abstract
Attachment of lipophilic groups is an important post-translational modification of proteins, which involves the coupling of one or more anchors such as fatty acids, isoprenoids, phospholipids, or glycosylphosphatidyl inositols. To study its impact on the membrane partitioning of hydrophobic peptides or proteins, we designed a tyrosine-based trifunctional linker. The linker allows the facile incorporation of two different functionalities at a cysteine residue in a single step. We determined the effect of the lipid modification on the membrane partitioning of the synthetic α-helical model peptide WALP with or without here and in all cases below; palmitoyl groups in giant unilamellar vesicles that contain a liquid-ordered (Lo ) and liquid-disordered (Ld ) phase. Introduction of two palmitoyl groups did not alter the localization of the membrane peptides, nor did the membrane thickness or lipid composition. In all cases, the peptide was retained in the Ld phase. These data demonstrate that the Lo domain in model membranes is highly unfavorable for a single membrane-spanning peptide.
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Affiliation(s)
- Łukasz Syga
- Department of BiochemistryGroningen Biomolecular Sciences andBiotechnology Institute and Zernike Institute for Advanced MaterialsUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Reinder H. de Vries
- Department of Biomolecular Chemistry and CatalysisStratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Hugo van Oosterhout
- Department of Biomolecular Chemistry and CatalysisStratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Rianne Bartelds
- Department of BiochemistryGroningen Biomolecular Sciences andBiotechnology Institute and Zernike Institute for Advanced MaterialsUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Arnold J. Boersma
- DWI Leibniz Institute for Interactive MaterialsForckenbeckstrasse 5052074AachenGermany
| | - Gerard Roelfes
- Department of Biomolecular Chemistry and CatalysisStratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Bert Poolman
- Department of BiochemistryGroningen Biomolecular Sciences andBiotechnology Institute and Zernike Institute for Advanced MaterialsUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
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16
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Grab HA, Kirsch VC, Sieber SA, Bach T. Totalsynthese des cyclischen Depsipeptids Vioprolid D über sein (
Z
)‐Diastereomer. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202002328] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Hanusch A. Grab
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
| | - Volker C. Kirsch
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
| | - Stephan A. Sieber
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
| | - Thorsten Bach
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
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17
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Norsikian S, Tresse C, François-Eude M, Jeanne-Julien L, Masson G, Servajean V, Genta-Jouve G, Beau JM, Roulland E. Total Synthesis of Tiacumicin B: Implementing Hydrogen Bond Directed Acceptor Delivery for Highly Selective β-Glycosylations. Angew Chem Int Ed Engl 2020; 59:6612-6616. [PMID: 32003915 DOI: 10.1002/anie.202000231] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Indexed: 02/03/2023]
Abstract
A total synthesis of tiacumicin B, a natural macrolide whose remarkable antibiotic properties are used to treat severe intestinal infections, is reported. The strategy is in part based on the prior synthesis of the tiacumicin B aglycone, and on the decisive use of sulfoxides as anomeric leaving groups in hydrogen-bond-mediated aglycone delivery (HAD). This new HAD variant permitted highly β-selective rhamnosylation and noviosylation. To increase convergence, the rhamnosylated C1-C3 fragment thus obtained was anchored to the C4-C19 aglycone fragment by adapting the Suzuki-Miyaura cross-coupling used for the aglycone synthesis. Ring-size-selective macrolactonization provided a compound engaged directly in the noviolysation step with virtually total β selectivity. The final efficient removal of all the protecting groups provided synthetic tiacumicin B.
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Affiliation(s)
- Stéphanie Norsikian
- Université Paris-Saclay, Institut de Chimie des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Cedric Tresse
- Université Paris-Saclay, Institut de Chimie des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Marc François-Eude
- Université Paris-Saclay, Institut de Chimie des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Louis Jeanne-Julien
- C-TAC, CitCom, UMR 8038, CNRS-Université de Paris, Faculté de Pharmacie, 4, avenue de l'Observatoire, 75006, Paris, France
| | - Guillaume Masson
- C-TAC, CitCom, UMR 8038, CNRS-Université de Paris, Faculté de Pharmacie, 4, avenue de l'Observatoire, 75006, Paris, France
| | - Vincent Servajean
- Université Paris-Saclay, Institut de Chimie des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Grégory Genta-Jouve
- C-TAC, CitCom, UMR 8038, CNRS-Université de Paris, Faculté de Pharmacie, 4, avenue de l'Observatoire, 75006, Paris, France
| | - Jean-Marie Beau
- Université Paris-Saclay, Institut de Chimie des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.,Laboratoire de Synthèse de Biomolécules, ICMMO, UMR 8182, Univ. Paris-Sud and CNRS, Université Paris-Saclay, 91405, Orsay, France
| | - Emmanuel Roulland
- C-TAC, CitCom, UMR 8038, CNRS-Université de Paris, Faculté de Pharmacie, 4, avenue de l'Observatoire, 75006, Paris, France
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18
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Norsikian S, Tresse C, François‐Eude M, Jeanne‐Julien L, Masson G, Servajean V, Genta‐Jouve G, Beau J, Roulland E. Total Synthesis of Tiacumicin B: Implementing Hydrogen Bond Directed Acceptor Delivery for Highly Selective β‐Glycosylations. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202000231] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Stéphanie Norsikian
- Université Paris-SaclayInstitut de Chimie des Substances Naturelles, UPR 2301 Avenue de la Terrasse 91198 Gif-sur-Yvette France
| | - Cedric Tresse
- Université Paris-SaclayInstitut de Chimie des Substances Naturelles, UPR 2301 Avenue de la Terrasse 91198 Gif-sur-Yvette France
| | - Marc François‐Eude
- Université Paris-SaclayInstitut de Chimie des Substances Naturelles, UPR 2301 Avenue de la Terrasse 91198 Gif-sur-Yvette France
| | - Louis Jeanne‐Julien
- C-TAC, CitCom, UMR 8038CNRS-Université de ParisFaculté de Pharmacie 4, avenue de l'Observatoire 75006 Paris France
| | - Guillaume Masson
- C-TAC, CitCom, UMR 8038CNRS-Université de ParisFaculté de Pharmacie 4, avenue de l'Observatoire 75006 Paris France
| | - Vincent Servajean
- Université Paris-SaclayInstitut de Chimie des Substances Naturelles, UPR 2301 Avenue de la Terrasse 91198 Gif-sur-Yvette France
| | - Grégory Genta‐Jouve
- C-TAC, CitCom, UMR 8038CNRS-Université de ParisFaculté de Pharmacie 4, avenue de l'Observatoire 75006 Paris France
| | - Jean‐Marie Beau
- Université Paris-SaclayInstitut de Chimie des Substances Naturelles, UPR 2301 Avenue de la Terrasse 91198 Gif-sur-Yvette France
- Laboratoire de Synthèse de BiomoléculesICMMO, UMR 8182Univ. Paris-Sud and CNRSUniversité Paris-Saclay 91405 Orsay France
| | - Emmanuel Roulland
- C-TAC, CitCom, UMR 8038CNRS-Université de ParisFaculté de Pharmacie 4, avenue de l'Observatoire 75006 Paris France
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19
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Oberheide A, Schwenk S, Ronco C, Semmrau LM, Görls H, Arndt HD. Synthesis, Structure, and Cytotoxicity of Urukthapelstatin A Polyazole Cyclopeptide Analogs. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900206] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Ansgar Oberheide
- Institut für Organische Chemie und Makromolekulare Chemie; Friedrich-Schiller-Universität; Humboldtstr. 10 07743 Jena Germany
| | - Sebastian Schwenk
- Institut für Organische Chemie und Makromolekulare Chemie; Friedrich-Schiller-Universität; Humboldtstr. 10 07743 Jena Germany
| | - Cyril Ronco
- CNRS UMR7272; Université Côte d'Azur; Institut de Chimie de Nice 28, Avenue Valrose 06108 Nice France
| | - Lisa Maria Semmrau
- Institut für Organische Chemie und Makromolekulare Chemie; Friedrich-Schiller-Universität; Humboldtstr. 10 07743 Jena Germany
| | - Helmar Görls
- Institut für Anorganische und Analytische Chemie; Friedrich-Schiller-Universität; Humboldtstr. 8 07743 Jena Germany
| | - Hans-Dieter Arndt
- Institut für Organische Chemie und Makromolekulare Chemie; Friedrich-Schiller-Universität; Humboldtstr. 10 07743 Jena Germany
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20
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Qiao L, Fisher E, McMurray L, Milicevic Sephton S, Hird M, Kuzhuppilly-Ramakrishnan N, Williamson DJ, Zhou X, Werry E, Kassiou M, Luthra S, Trigg W, Aigbirhio FI. Radiosynthesis of (R,S)-[ 18 F]GE387: A Potential PET Radiotracer for Imaging Translocator Protein 18 kDa (TSPO) with Low Binding Sensitivity to the Human Gene Polymorphism rs6971. ChemMedChem 2019; 14:982-993. [PMID: 30900397 PMCID: PMC6563049 DOI: 10.1002/cmdc.201900023] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Revised: 02/26/2019] [Indexed: 12/14/2022]
Abstract
Translocator protein (TSPO) is a biomarker of neuroinflammation, which is a hallmark of many neurodegenerative diseases and has been exploited as a positron emission tomography (PET) target. Carbon-11-labelled PK11195 remains the most applied agent for imaging TSPO, despite its short-lived isotope and low brain permeability. Second-generation radiotracers show variance in affinity amongst subjects (low-, mixed-, and high-affinity binders) caused by the genetic polymorphism (rs6971) of the TSPO gene. To overcome these limitations, a new structural scaffold was explored based on the TSPO pharmacophore, and the analogue with a low-affinity binder/high-affinity binder (LAB/HAB) ratio similar (1.2 vs. 1.3) to that of (R)-[11 C]PK11195 was investigated. The synthesis of the reference compound was accomplished in six steps and 9 % overall yield, and the precursor was prepared in eight steps and 8 % overall yield. The chiral separation of the reference and precursor compounds was performed using supercritical fluid chromatography with >95 % ee. The absolute configuration was determined by circular dichroism. Optimisation of reaction conditions for manual radiolabelling revealed acetonitrile as a preferred solvent at 100 °C. Automation of this radiolabelling method provided R and S enantiomers in respective 21.3±16.7 and 25.6±7.1 % decay-corrected yields and molar activities of 55.8±35.6 and 63.5±39.5 GBq μmol-1 (n=3). Injection of the racemic analogue into a healthy rat confirmed passage through the blood-brain barrier.
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Affiliation(s)
- Luxi Qiao
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Emily Fisher
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Lindsay McMurray
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Selena Milicevic Sephton
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Matthew Hird
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Nisha Kuzhuppilly-Ramakrishnan
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - David J Williamson
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Xiouyun Zhou
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
| | - Eryn Werry
- School of Chemistry, The University of Sydney, Building F11, Eastern Avenue, Sydney, NSW, 2006, Australia
| | - Michael Kassiou
- School of Chemistry, The University of Sydney, Building F11, Eastern Avenue, Sydney, NSW, 2006, Australia
| | | | | | - Franklin I Aigbirhio
- Molecular Imaging Chemical Laboratory, Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, University of Cambridge, Biomedical Campus, Cambridge, CB2 0SZ, UK
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21
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Affiliation(s)
- Naifeng Hu
- State Key Laboratory of Elemento-organic ChemistryCollege of ChemistryNankai University Tianjin 300071 China
| | - Changming Dong
- State Key Laboratory of Elemento-organic ChemistryCollege of ChemistryNankai University Tianjin 300071 China
| | - Cuifang Zhang
- State Key Laboratory of Elemento-organic ChemistryCollege of ChemistryNankai University Tianjin 300071 China
| | - Guangxin Liang
- State Key Laboratory of Elemento-organic ChemistryCollege of ChemistryNankai University Tianjin 300071 China
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22
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Hu N, Dong C, Zhang C, Liang G. Total Synthesis of (-)-Indoxamycins A and B. Angew Chem Int Ed Engl 2019; 58:6659-6662. [PMID: 30835916 DOI: 10.1002/anie.201902043] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Indexed: 11/07/2022]
Abstract
The concise total syntheses of (-)-indoxamycins A and B is reported. The chemistry features a seven-step preparation of a highly congested [5.5.6] tricyclic advanced common intermediate from a readily available R-carvone derivative. Key steps involve a Pauson-Khand reaction for the rapid construction of a basic scaffold bearing a quaternary carbon, a copper-catalyzed Michael addition for the introduction of another adjacent all-carbon quaternary stereocenter, and a tandem retro-oxa-Michael addition/1,2-addition/oxa-Michael addition for the installation of a trisubstituted olefin side chain. This synthetic strategy allows for easy access to both enantiomers of this family of natural products and their analogues from cost-effective starting material through straightforward chemical transformations.
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Affiliation(s)
- Naifeng Hu
- State Key Laboratory of Elemento-organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Changming Dong
- State Key Laboratory of Elemento-organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Cuifang Zhang
- State Key Laboratory of Elemento-organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Guangxin Liang
- State Key Laboratory of Elemento-organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
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23
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Affiliation(s)
- Scott M. Caplan
- Department of Chemistry University of Pittsburgh Pittsburgh PA 15260 USA
| | - Paul E. Floreancig
- Department of Chemistry University of Pittsburgh Pittsburgh PA 15260 USA
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24
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Caplan SM, Floreancig PE. Total Synthesis of Divergolides E and H. Angew Chem Int Ed Engl 2018; 57:15866-15870. [DOI: 10.1002/anie.201810336] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Scott M. Caplan
- Department of Chemistry University of Pittsburgh Pittsburgh PA 15260 USA
| | - Paul E. Floreancig
- Department of Chemistry University of Pittsburgh Pittsburgh PA 15260 USA
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25
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Junk L, Kazmaier U. Total Synthesis of Keramamides A and L from a Common Precursor by Late-Stage Indole Synthesis and Configurational Revision. Angew Chem Int Ed Engl 2018; 57:11432-11435. [PMID: 30019808 DOI: 10.1002/anie.201806657] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2018] [Indexed: 01/27/2023]
Abstract
The marine natural products keramamide A and L, members of the class of anabaenopeptin-type peptides, were synthesized for the first time by a convergent and flexible route. The installation of the substituted tryptophan moieties was accomplished at the very end of the synthesis on the cyclic peptides, and thus enabled the synthesis of both natural products from one common precursor. The preparation of several epimers clearly indicates that the originally proposed relative configurations of both Keramamides A and L were not correct.
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Affiliation(s)
- Lukas Junk
- Institut für Organische Chemie, Universität des Saarlandes, Campus C4.2, 66123, Saarbrücken, Germany
| | - Uli Kazmaier
- Institut für Organische Chemie, Universität des Saarlandes, Campus C4.2, 66123, Saarbrücken, Germany
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26
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Junk L, Kazmaier U. Totalsynthese der Keramamide A und L aus einer gemeinsamen Vorstufe durch späte Indolsynthese und Revision ihrer Konfiguration. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806657] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Lukas Junk
- Institut für Organische Chemie; Universität des Saarlandes; Campus C4.2 66123 Saarbrücken Deutschland
| | - Uli Kazmaier
- Institut für Organische Chemie; Universität des Saarlandes; Campus C4.2 66123 Saarbrücken Deutschland
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27
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Zaffaroni R, Detz RJ, van der Vlugt JI, Reek JNH. A Functional Hydrogenase Mimic Chemisorbed onto Fluorine-Doped Tin Oxide Electrodes: A Strategy towards Water Splitting Devices. CHEMSUSCHEM 2018; 11:209-218. [PMID: 29077275 PMCID: PMC5814736 DOI: 10.1002/cssc.201701757] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 10/26/2017] [Indexed: 06/07/2023]
Abstract
A diiron benzenedithiolate hydrogen-evolving catalyst immobilized onto fluorine-doped tin oxide (FTO) electrodes is prepared, characterized, and studied in the context of the development of water splitting devices based on molecular components. FTO was chosen as the preferred electrode material owing to its conductive properties and electrochemical stability. An FTO nanocrystalline layer is also used to greatly improve the surface area of commercially available FTO while preserving the properties of the material. Electrodes bearing a covalently anchored diiron catalyst are shown to be competent for electrocatalytic hydrogen evolution from acidic aqueous media at relatively low overpotential (500 mV) with a faradaic efficiency close to unity. Compared with bulk solution catalysts, the catalyst immobilized onto the electrode surface operates at roughly 160 mV lower overpotentials, yet with similar rates.
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Affiliation(s)
- Riccardo Zaffaroni
- Van't Hoff Institute for Molecular SciencesUniversity of AmsterdamScience Park 9041098XHAmsterdamThe Netherlands
| | - Remko J. Detz
- Van't Hoff Institute for Molecular SciencesUniversity of AmsterdamScience Park 9041098XHAmsterdamThe Netherlands
| | - Jarl Ivar van der Vlugt
- Van't Hoff Institute for Molecular SciencesUniversity of AmsterdamScience Park 9041098XHAmsterdamThe Netherlands
| | - Joost N. H. Reek
- Van't Hoff Institute for Molecular SciencesUniversity of AmsterdamScience Park 9041098XHAmsterdamThe Netherlands
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28
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Abe H, Ouchi H, Sakashita C, Kawada M, Watanabe T, Shibasaki M. Catalytic Asymmetric Total Synthesis and Stereochemical Revision of Leucinostatin A: A Modulator of Tumor-Stroma Interaction. Chemistry 2017; 23:11792-11796. [PMID: 28703358 DOI: 10.1002/chem.201703239] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Indexed: 11/09/2022]
Abstract
Total synthesis of leucinostatin A, a modulator of tumor-stroma interactions, using asymmetric catalyses, a nitroaldol reaction, thioamide-aldol reaction, Strecker-type reaction, and alcoholysis of 3-methylglutaric anhydride, is described. We demonstrated the applicability of the established catalytic asymmetric processes to the synthesis of molecules with a complex structure. Careful analysis of the NMR data, HPLC profiles, and biological activity revealed that the correct structure of leucinostatin A is the epimeric form of the reported structure; the secondary alcohol within the AHMOD residue has an R configuration.
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Affiliation(s)
- Hikaru Abe
- Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Hitoshi Ouchi
- Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Chiharu Sakashita
- Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Manabu Kawada
- Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Takumi Watanabe
- Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki Shinagawa-ku, Tokyo, 141-0021, Japan
| | - Masakatsu Shibasaki
- Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki Shinagawa-ku, Tokyo, 141-0021, Japan
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29
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Bucci R, Bonetti A, Clerici F, Contini A, Nava D, Pellegrino S, Tessaro D, Gelmi ML. Tandem Tetrahydroisoquinoline-4-carboxylic Acid/β-Alanine as a New Construct Able To Induce a Flexible Turn. Chemistry 2017; 23:10822-10831. [PMID: 28467649 DOI: 10.1002/chem.201701045] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Indexed: 12/21/2022]
Abstract
Tetrahydroisoquinoline-4-carboxylic acid, a constrained β2 -amino acid named β-TIC, was synthesised for the first time in enantiopure form. The biocatalytic route applied herein represents one of the few successful examples of enzymatic resolution of β2 -amino acids. Model tetrapeptides, namely, Fmoc-l-Ala-β-TIC-β-Ala-l-Val-OBn (Fmoc=fluorenylmethyloxycarbonyl, Bn=benzyl), containing both isomers of β-TIC, were prepared. Both computational and NMR spectroscopy studies were performed. A reverse-turn conformation was observed in the case of (R)-β-TIC enantiomer that was obtained in 99 % enantiomeric excess by enzymatic resolution. The β-TIC/β-Ala construct represents the first example of a flexible turn mimetic containing a cyclic and an acyclic β-amino acid. Furthermore, the presence of an aromatic ring of β-TIC could facilitate non-covalent interactions to increase the potential of this scaffold for the preparation of protein-protein interaction modulators.
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Affiliation(s)
- Raffaella Bucci
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
| | - Andrea Bonetti
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
| | - Francesca Clerici
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
| | - Alessandro Contini
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
| | - Donatella Nava
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
| | - Sara Pellegrino
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
| | - Davide Tessaro
- Department of Chemistry, Materials and, Chemical Engineering "G. Natta", Politecnico di Milano, p.za L. da Vinci 32, 20133, Milano, Italy
| | - Maria Luisa Gelmi
- DISFARM, Sezione di Chimica Generale e Organica "A. Marchesini", Università degli Studi Milano, Via Venezian 21, 20133, Milano, Italy
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30
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Dexter HL, Williams HEL, Lewis W, Moody CJ. Total Synthesis of the Post-translationally Modified Polyazole Peptide Antibiotic Goadsporin. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201612103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
| | | | - William Lewis
- School of Chemistry; University Park Nottingham NG7 2RD UK
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31
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Dexter HL, Williams HEL, Lewis W, Moody CJ. Total Synthesis of the Post-translationally Modified Polyazole Peptide Antibiotic Goadsporin. Angew Chem Int Ed Engl 2017; 56:3069-3073. [PMID: 28145618 DOI: 10.1002/anie.201612103] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Revised: 01/17/2017] [Indexed: 11/06/2022]
Abstract
The structurally unique polyazole antibiotic goadsporin contains six heteroaromatic oxazole and thiazole rings integrated into a linear array of amino acids that also contains two dehydroalanine residues. An efficient total synthesis of goadsporin is reported in which the key steps are the use of rhodium(II)-catalyzed reactions of diazocarbonyl compounds to generate the four oxazole rings, which demonstrates the power of rhodium carbene chemistry in organic chemical synthesis.
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Affiliation(s)
- Hannah L Dexter
- School of Chemistry, University Park, Nottingham, NG7 2RD, UK
| | | | - William Lewis
- School of Chemistry, University Park, Nottingham, NG7 2RD, UK
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32
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Bioinspired Total Synthesis of the Dimeric Indole Alkaloid (+)-Haplophytine by Direct Coupling and Late-Stage Oxidative Rearrangement. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201609285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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33
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Satoh H, Ojima KI, Ueda H, Tokuyama H. Bioinspired Total Synthesis of the Dimeric Indole Alkaloid (+)-Haplophytine by Direct Coupling and Late-Stage Oxidative Rearrangement. Angew Chem Int Ed Engl 2016; 55:15157-15161. [DOI: 10.1002/anie.201609285] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Hitoshi Satoh
- Graduate School of Pharmaceutical Sciences; Tohoku University; Aoba 6-3, Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Ken-ichi Ojima
- Graduate School of Pharmaceutical Sciences; Tohoku University; Aoba 6-3, Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Hirofumi Ueda
- Graduate School of Pharmaceutical Sciences; Tohoku University; Aoba 6-3, Aramaki, Aoba-ku Sendai 980-8578 Japan
| | - Hidetoshi Tokuyama
- Graduate School of Pharmaceutical Sciences; Tohoku University; Aoba 6-3, Aramaki, Aoba-ku Sendai 980-8578 Japan
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Schwenk S, Ronco C, Oberheide A, Arndt HD. Biomimetic Synthesis of Urukthapelstatin A by Aza-Wittig Ring Contraction. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600994] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Sebastian Schwenk
- Friedrich-Schiller-Universität; Institut für Organische Chemie und Makromolekulare Chemie; Humboldtstr. 10 07743 Jena Germany
| | - Cyril Ronco
- Friedrich-Schiller-Universität; Institut für Organische Chemie und Makromolekulare Chemie; Humboldtstr. 10 07743 Jena Germany
| | - Ansgar Oberheide
- Friedrich-Schiller-Universität; Institut für Organische Chemie und Makromolekulare Chemie; Humboldtstr. 10 07743 Jena Germany
| | - Hans-Dieter Arndt
- Friedrich-Schiller-Universität; Institut für Organische Chemie und Makromolekulare Chemie; Humboldtstr. 10 07743 Jena Germany
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Fadeyi O, Parikh MD, Chen MZ, Kyne RE, Taylor AP, O'Doherty I, Kaiser SE, Barbas S, Niessen S, Shi M, Weinrich SL, Kath JC, Jones LH, Robinson RP. Chemoselective Preparation of Clickable Aryl Sulfonyl Fluoride Monomers: A Toolbox of Highly Functionalized Intermediates for Chemical Biology Probe Synthesis. Chembiochem 2016; 17:1925-1930. [PMID: 27504718 DOI: 10.1002/cbic.201600427] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2016] [Indexed: 11/08/2022]
Abstract
Sulfonyl fluoride (SF)-based activity probes have become important tools in chemical biology. Herein, exploiting the relative chemical stability of SF to carry out a number of unprecedented SF-sparing functional group manipulations, we report the chemoselective synthesis of a toolbox of highly functionalized aryl SF monomers that we used to quickly prepare SF chemical biology probes. In addition to SF, the monomers bear an embedded click handle (a terminal alkyne that can perform copper(I)-mediated azide-alkyne cycloaddition). The monomers can be used either as fragments to prepare clickable SF analogues of drugs (biologically active compounds) bearing an aryl ring or, alternatively, attached to drugs as minimalist clickable aryl SF substituents.
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Affiliation(s)
| | - Mihir D Parikh
- Medicine Design, Pfizer Inc., Eastern Point Road, Groton, CT, 06340, USA
| | - Ming Z Chen
- Medicine Design, Pfizer Inc., Eastern Point Road, Groton, CT, 06340, USA
| | - Robert E Kyne
- Medicine Design, Pfizer Inc., Eastern Point Road, Groton, CT, 06340, USA
| | | | - Inish O'Doherty
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - Stephen E Kaiser
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - Sabrina Barbas
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - Sherry Niessen
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - Manli Shi
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - Scott L Weinrich
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - John C Kath
- Oncology RU Medicinal Chemistry, Pfizer Inc., 10770 Science Center Drive, San Diego, CA, 92121, USA
| | - Lyn H Jones
- Medicine Design, Pfizer Inc., 610 Main Street, Cambridge, MA, 02139, USA
| | - Ralph P Robinson
- Medicine Design, Pfizer Inc., Eastern Point Road, Groton, CT, 06340, USA.
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Kim K, Park JM, Kim NJ, Kim SJ, Moon H, An H, Lee J, Park HJ, Surh YJ, Suh YG. Identification and Structural Analysis of New Nrf2 Activators by Mechanism-Based Chemical Transformation of 15-Deoxy-Δ12, 14-PGJ2. Chembiochem 2016; 17:1900-1904. [DOI: 10.1002/cbic.201600165] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Indexed: 01/05/2023]
Affiliation(s)
- Kyeojin Kim
- College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
| | - Jong-Min Park
- CHA Cancer Prevention Research Center; CHA University School of Medicine; Seoul 135-081 Republic of Korea
| | - Nam-Jung Kim
- Department of Pharmacy; College of Pharmacy; Kyung Hee University; 26 Kyungheedae-ro Dongdaemun-gu Seoul 130-701 Republic of Korea
| | - Su-Jung Kim
- Tumor Microenvironment Global Core Research Center; College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
| | - Hyunyoung Moon
- College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
| | - Hongchan An
- College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
| | - Jeeyeon Lee
- College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
| | - Hyun-Ju Park
- School of Pharmacy; Sungkyunkwan University; Suwon 440-746 Republic of Korea
| | - Young-Joon Surh
- Tumor Microenvironment Global Core Research Center; College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
| | - Young-Ger Suh
- College of Pharmacy; Seoul National University; 1 Gwanak-ro Gwanak-gu Seoul 151-742 Republic of Korea
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37
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Koteva K, King AM, Capretta A, Wright GD. Total Synthesis and Activity of the Metallo-β-lactamase Inhibitor Aspergillomarasmine A. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201510057] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Kalinka Koteva
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
| | - Andrew M. King
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
| | - Alfredo Capretta
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
- Department of Chemistry and Chemical Biology; McMaster University; 1280 Main Street West Hamilton ON Canada
| | - Gerard D. Wright
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
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38
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Koteva K, King AM, Capretta A, Wright GD. Total Synthesis and Activity of the Metallo-β-lactamase Inhibitor Aspergillomarasmine A. Angew Chem Int Ed Engl 2015; 55:2210-2. [PMID: 26709849 DOI: 10.1002/anie.201510057] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Indexed: 01/03/2023]
Affiliation(s)
- Kalinka Koteva
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
| | - Andrew M. King
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
| | - Alfredo Capretta
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
- Department of Chemistry and Chemical Biology; McMaster University; 1280 Main Street West Hamilton ON Canada
| | - Gerard D. Wright
- Michael G. DeGroote Institute for Infectious Disease Research; McMaster University; 1280 Main Street West Hamilton ON Canada
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39
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Kurogi T, Okaya S, Fujiwara H, Okano K, Tokuyama H. Total Synthesis of (+)-MPC1001B. Angew Chem Int Ed Engl 2015; 55:283-7. [DOI: 10.1002/anie.201507830] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Indexed: 11/08/2022]
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Kurogi T, Okaya S, Fujiwara H, Okano K, Tokuyama H. Total Synthesis of (+)-MPC1001B. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201507830] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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41
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Berthet M, Davanier F, Dujardin G, Martinez J, Parrot I. MgI2-Mediated Chemoselective Cleavage of Protecting Groups: An Alternative to Conventional Deprotection Methodologies. Chemistry 2015; 21:11014-6. [DOI: 10.1002/chem.201501799] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2015] [Indexed: 01/08/2023]
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Erb W, Grassot JM, Linder D, Neuville L, Zhu J. Enantioselective synthesis of putative lipiarmycin aglycon related to fidaxomicin/tiacumicin B. Angew Chem Int Ed Engl 2014; 54:1929-32. [PMID: 25422174 DOI: 10.1002/anie.201409475] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2014] [Indexed: 11/09/2022]
Abstract
An enantioselective synthesis of a putative lipiarmycin aglycon was accomplished and features: 1) Brown's enantioselective alkoxyallylboration and allylation of aldehydes, 2) chain elongation by iterative Horner-Wadsworth-Emmons olefination, 3) Evans' aldol reaction and 4) an ene-diene ring-closing metathesis. A neighboring-group-assisted chemoselective reductive desilylation was uncovered in this study and was instrumental to the realization of the present synthesis.
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Affiliation(s)
- William Erb
- Centre de Recherche de Gif, Laboratoire International Associé, Institut de Chimie des Substances Naturelles, CNRS, 91198 Gif-sur-Yvette Cedex (France)
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Erb W, Grassot JM, Linder D, Neuville L, Zhu J. Enantioselective Synthesis of Putative Lipiarmycin Aglycon Related to Fidaxomicin/Tiacumicin B. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201409475] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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44
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He C, Zhu C, Wang B, Ding H. Stereoselective Total Synthesis and Structural Elucidation of (−)-Indoxamycins A-F. Chemistry 2014; 20:15053-60. [DOI: 10.1002/chem.201403986] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Indexed: 11/12/2022]
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Datta D, Dasgupta S, Pathak T. Ribonuclease A inhibition by carboxymethylsulfonyl-modified xylo- and arabinopyrimidines. ChemMedChem 2014; 9:2138-49. [PMID: 25125220 DOI: 10.1002/cmdc.201402179] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2014] [Indexed: 11/10/2022]
Abstract
A group of acidic nucleosides were synthesized to develop a new class of ribonuclease A (RNase A) inhibitors. Our recent study on carboxymethylsulfonyl-modified nucleosides revealed some interesting results in RNase A inhibition. This positive outcome triggered an investigation of the role played by secondary sugar hydroxy groups in inhibiting RNase A activity. Uridines and cytidines modified with SO2 CH2 COOH groups at the 2'- and 3'-positions show good inhibitory properties with low inhibition constant (Ki ) values in the range of 109-17 μM. The present work resulted in a set of inhibitors that undergo more effective interactions with the RNase A active site, as visualized by docking studies.
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Affiliation(s)
- Dhrubajyoti Datta
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur (India), Fax: (+91) 3222-255303
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Mulder MPC, El Oualid F, ter Beek J, Ovaa H. A native chemical ligation handle that enables the synthesis of advanced activity-based probes: diubiquitin as a case study. Chembiochem 2014; 15:946-9. [PMID: 24623714 PMCID: PMC4159580 DOI: 10.1002/cbic.201402012] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2014] [Indexed: 01/08/2023]
Abstract
We present the development of a native chemical ligation handle that also functions as a masked electrophile that can be liberated during synthesis when required. This handle can thus be used for the synthesis of complex activity-based probes. We describe the use of this handle in the generation of linkage-specific activity-based deubiquitylating enzyme probes that contain substrate context and closely mimic the native ubiquitin isopeptide linkage. We have generated activity-based probes based on all seven isopeptide-linked diubiquitin topoisomers and demonstrated their structural integrity and ability to label DUBs in a linkage-specific manner.
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Affiliation(s)
- Monique P C Mulder
- Division of Cell Biology, Netherlands Cancer Institute (NKI)Plesmanlaan 121, 1066 CX Amsterdam (The Netherlands) E-mail: Homepage: http://research.nki.nl/Ovaalab/
| | - Farid El Oualid
- Division of Cell Biology, Netherlands Cancer Institute (NKI)Plesmanlaan 121, 1066 CX Amsterdam (The Netherlands) E-mail: Homepage: http://research.nki.nl/Ovaalab/
| | - Jarno ter Beek
- Division of Cell Biology, Netherlands Cancer Institute (NKI)Plesmanlaan 121, 1066 CX Amsterdam (The Netherlands) E-mail: Homepage: http://research.nki.nl/Ovaalab/
| | - Huib Ovaa
- Division of Cell Biology, Netherlands Cancer Institute (NKI)Plesmanlaan 121, 1066 CX Amsterdam (The Netherlands) E-mail: Homepage: http://research.nki.nl/Ovaalab/
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47
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Müller S, Sasse F, Maier ME. Synthesis of Pladienolide B and Its 7-Epimer with Insights into the Role of the Allylic Acetate. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301468] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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48
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Song L, Liu J, Gui H, Hui C, Zhou J, Guo Y, Zhang P, Xu Z, Ye T. Synthesis of the Macrocyclic Core of Rhizopodin. Chem Asian J 2013; 8:2955-9. [DOI: 10.1002/asia.201300802] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2013] [Indexed: 01/28/2023]
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50
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Vaz B, Otero L, Álvarez R, de Lera ÁR. Total Synthesis of Enantiopure Pyrrhoxanthin: Alternative Methods for the Stereoselective Preparation of 4-Alkylidenebutenolides. Chemistry 2013; 19:13065-74. [DOI: 10.1002/chem.201301873] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Indexed: 11/07/2022]
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