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Gu S, Zhuang J, Wang T, Hu S, Song W, Liao X. The target region focused imaging method for scanning ion conductance microscopy. Ultramicroscopy 2024; 257:113910. [PMID: 38091869 DOI: 10.1016/j.ultramic.2023.113910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 08/20/2023] [Accepted: 12/08/2023] [Indexed: 01/05/2024]
Abstract
Scanning ion conductance microscopy (SICM) has developed rapidly and has wide applications in biomedicine, single-cell science and other fields. SICM scanning speed is limited by the conventional raster-type scanning method, which spends most of time on imaging the substrate and does not focus enough on the target area. In order to solve this problem, a target region focused (TRF) method is proposed, which can effectively avoid the scanning of unnecessary substrate areas and enables SICM to image the target area only to achieve high-speed and effective local scanning. TRF method and conventional hopping mode scanning method are compared in the experiments using breast cancer cells and rat basophilic leukemia cells as experimental materials. It was demonstrated that our method can reduce the scanning time for a single sample image significantly without losing scanning information or compromising the quality of imaging. The TRF method developed in this paper can provide an efficient and fast scanning strategy for improving the imaging performance of SICM systems, which can be applied to the dynamic features of cell samples in the fields of biology and pharmacology analysis.
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Affiliation(s)
- Shengbo Gu
- Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System, Xi'an Jiaotong University, Xi'an 710049, PR China; School of Mechanical Engineering, Xi'an Jiaotong University, Xi'an 710049, PR China
| | - Jian Zhuang
- Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System, Xi'an Jiaotong University, Xi'an 710049, PR China; School of Mechanical Engineering, Xi'an Jiaotong University, Xi'an 710049, PR China.
| | - Tianying Wang
- Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System, Xi'an Jiaotong University, Xi'an 710049, PR China; School of Mechanical Engineering, Xi'an Jiaotong University, Xi'an 710049, PR China
| | - Shiting Hu
- School of Pharmacy, Xi'an Jiaotong University, Xi'an 710049, PR China
| | - Weilun Song
- Shaanxi Province Center for Regenerative Medicine and Surgery Engineering Research, the First Affiliated Hospital of Xi'an Jiaotong University, Xi'an Shaanxi 710061, PR China; National Local Joint Engineering Research Center for Precision Surgery, the First Affiliated Hospital of Xi'an Jiaotong University, Xi'an Shaanxi 710061, PR China
| | - Xiaobo Liao
- Key Laboratory of Testing Technology for Manufacturing Process, Ministry of Education, Southwest University of Science and Technology, Mianyang 621010, PR China.
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2
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Kolmogorov VS, Erofeev AS, Barykin EP, Timoshenko RV, Lopatukhina EV, Kozin SA, Gorbacheva LR, Salikhov SV, Klyachko NL, Mitkevich VA, Edwards CRW, Korchev YE, Makarov AA, Gorelkin PV. Scanning Ion-Conductance Microscopy for Studying β-Amyloid Aggregate Formation on Living Cell Surfaces. Anal Chem 2023; 95:15943-15949. [PMID: 37856787 DOI: 10.1021/acs.analchem.3c02806] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2023]
Abstract
β-Amyloid aggregation on living cell surfaces is described as responsible for the neurotoxicity associated with different neurodegenerative diseases. It is suggested that the aggregation of β-amyloid (Aβ) peptide on neuronal cell surface leads to various deviations of its vital function due to myriad pathways defined by internalization of calcium ions, apoptosis promotion, reduction of membrane potential, synaptic activity loss, etc. These are associated with structural reorganizations and pathologies of the cell cytoskeleton mainly involving actin filaments and microtubules and consequently alterations of cell mechanical properties. The effect of amyloid oligomers on cells' Young's modulus has been observed in a variety of studies. However, the precise connection between the formation of amyloid aggregates on cell membranes and their effects on the local mechanical properties of living cells is still unresolved. In this work, we have used correlative scanning ion-conductance microscopy (SICM) to study cell topography, Young's modulus mapping, and confocal imaging of Aβ aggregate formation on living cell surfaces. However, it is well-known that the cytoskeleton state is highly connected to the intracellular level of reactive oxygen species (ROS). The effect of Aβ leads to the induction of oxidative stress, actin polymerization, and stress fiber formation. We measured the reactive oxygen species levels inside single cells using platinum nanoelectrodes to demonstrate the connection of ROS and Young's modulus of cells. SICM can be successfully applied to studying the cytotoxicity mechanisms of Aβ aggregates on living cell surfaces.
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Affiliation(s)
- Vasilii S Kolmogorov
- National University of Science and Technology "MISIS", 119049 Moscow, Russian Federation
- Lomonosov Moscow State University, 119991 Moscow, Russian Federation
| | - Alexander S Erofeev
- National University of Science and Technology "MISIS", 119049 Moscow, Russian Federation
| | - Evgeny P Barykin
- Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Roman V Timoshenko
- National University of Science and Technology "MISIS", 119049 Moscow, Russian Federation
| | - Elena V Lopatukhina
- National University of Science and Technology "MISIS", 119049 Moscow, Russian Federation
| | - Sergey A Kozin
- Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Lyubov R Gorbacheva
- Lomonosov Moscow State University, 119991 Moscow, Russian Federation
- Pirogov Russian National Research Medical University, 117997 Moscow, Russian Federation
| | - Sergey V Salikhov
- National University of Science and Technology "MISIS", 119049 Moscow, Russian Federation
| | | | - Vladimir A Mitkevich
- Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | | | - Yuri E Korchev
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, 920-1192 Kanazawa, Japan
- Department of Medicine, Imperial College London, SW7 2AZ London, United Kingdom
| | - Alexander A Makarov
- Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, 119991 Moscow, Russian Federation
| | - Petr V Gorelkin
- National University of Science and Technology "MISIS", 119049 Moscow, Russian Federation
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3
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Rahimi E, Imani A, Lekka M, Andreatta F, Gonzalez-Garcia Y, Mol JMC, Asselin E, Fedrizzi L. Morphological and Surface Potential Characterization of Protein Nanobiofilm Formation on Magnesium Alloy Oxide: Their Role in Biodegradation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:10854-10866. [PMID: 35994730 PMCID: PMC9454254 DOI: 10.1021/acs.langmuir.2c01540] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 08/15/2022] [Indexed: 06/15/2023]
Abstract
The formation of a protein nanobiofilm on the surface of degradable biomaterials such as magnesium (Mg) and its alloys influences metal ion release, cell adhesion/spreading, and biocompatibility. During the early stage of human body implantation, competition and interaction between inorganic species and protein molecules result in a complex film containing Mg oxide and a protein layer. This film affects the electrochemical properties of the metal surface, the protein conformational arrangement, and the electronic properties of the protein/Mg oxide interface. In this study, we discuss the impact of various simulated body fluids, including sodium chloride (NaCl), phosphate-buffered saline (PBS), and Hanks' solutions on protein adsorption, electrochemical interactions, and electrical surface potential (ESP) distribution at the adsorbed protein/Mg oxide interface. After 10 min of immersion in NaCl, atomic force microscopy (AFM) and scanning Kelvin probe force microscopy (SKPFM) showed a higher surface roughness related to enhanced degradation and lower ESP distribution on a Mg-based alloy than those in other solutions. Furthermore, adding bovine serum albumin (BSA) to all solutions caused a decline in the total surface roughness and ESP magnitude on the Mg alloy surface, particularly in the NaCl electrolyte. Using SKPFM surface analysis, we detected a protein nanobiofilm (∼10-20 nm) with an aggregated and/or fibrillary morphology only on the Mg surface exposed in Hanks' and PBS solutions; these surfaces had a lower ESP value than the oxide layer.
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Affiliation(s)
- Ehsan Rahimi
- Polytechnic
Department of Engineering and Architecture, University of Udine, 33100 Udine, Italy
- Department
of Materials Science and Engineering, Delft
University of Technology, Mekelweg 2, 2628 CD Delft, The Netherlands
| | - Amin Imani
- Department
of Materials Engineering, The University
of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Maria Lekka
- CIDETEC,
Basque Research and Technology Alliance (BRTA), Po. Miramón 196, 20014 Donostia-San Sebastián, Spain
| | - Francesco Andreatta
- Polytechnic
Department of Engineering and Architecture, University of Udine, 33100 Udine, Italy
| | - Yaiza Gonzalez-Garcia
- Department
of Materials Science and Engineering, Delft
University of Technology, Mekelweg 2, 2628 CD Delft, The Netherlands
| | - Johannes M. C. Mol
- Department
of Materials Science and Engineering, Delft
University of Technology, Mekelweg 2, 2628 CD Delft, The Netherlands
| | - Edouard Asselin
- Department
of Materials Engineering, The University
of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Lorenzo Fedrizzi
- Polytechnic
Department of Engineering and Architecture, University of Udine, 33100 Udine, Italy
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4
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Ruan H, Zhang X, Yuan J, Fang X. Effect of water-soluble fullerenes on macrophage surface ultrastructure revealed by scanning ion conductance microscopy. RSC Adv 2022; 12:22197-22201. [PMID: 36043103 PMCID: PMC9364078 DOI: 10.1039/d2ra02403a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 07/31/2022] [Indexed: 11/24/2022] Open
Abstract
C60-fullerenes have unique potential in antiviral, drug delivery, photodynamic therapy and other biomedical applications. However, little is known about their effects on macrophage surface morphology and ultrastructure. Here by using contact-free scanning ion conductance microscopy (SICM), we investigated the effects of two water-soluble fullerenes on the surface ultrastructure and function of macrophages. The results showed that these fullerenes would be a promising phagocytosis inhibitor and SICM would be an excellent tool to study the morphological information of adhesive and fragile samples. Nanoscale morphological changes of macrophages characterized by contact-free SICM and their relationship with phagocytosis after C60-fullerene treatment demonstrate they are a potential phagocytosis inhibitor.![]()
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Affiliation(s)
- Hefei Ruan
- Key Laboratory of Molecular Nanostructure and Nanotechnology, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences Beijing China .,Tsinghua-Peking University Joint Center for Life Sciences, School of Medicine, Tsinghua University Beijing China
| | - Xuejie Zhang
- Collaborative Innovation Center of Assessment Toward Basic Education Quality, Beijing Normal University Beijing China
| | - Jinghe Yuan
- Key Laboratory of Molecular Nanostructure and Nanotechnology, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences Beijing China
| | - Xiaohong Fang
- Key Laboratory of Molecular Nanostructure and Nanotechnology, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences Beijing China
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5
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Møller Sønderskov S, Hyldgaard Klausen L, Amland Skaanvik S, Han X, Dong M. In situ Surface Charge Density Visualization of Self-assembled DNA Nanostructures after Ion Exchange. Chemphyschem 2020; 21:1474-1482. [PMID: 32330354 PMCID: PMC7891384 DOI: 10.1002/cphc.201901168] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Revised: 04/14/2020] [Indexed: 12/30/2022]
Abstract
The charge density of DNA is a key parameter in strand hybridization and for the interactions occurring between DNA and molecules in biological systems. Due to the intricate structure of DNA, visualization of the surface charge density of DNA nanostructures under physiological conditions was not previously possible. Here, we perform a simultaneous analysis of the topography and surface charge density of DNA nanostructures using atomic force microscopy and scanning ion conductance microscopy. The effect of in situ ion exchange using various alkali metal ions is tested with respect to the adsorption of DNA origami onto mica, and a quantitative study of surface charge density reveals ion exchange phenomena in mica as a key parameter in DNA adsorption. This is important for structure-function studies of DNA nanostructures. The research provides an efficient approach to study surface charge density of DNA origami nanostructures and other biological molecules at a single molecule level.
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Affiliation(s)
| | - Lasse Hyldgaard Klausen
- Interdisciplinary Nanoscience Center (iNANO)Aarhus University, Denmark
- Department of ChemistryStanford University333 Campus DriveStanfordCA 94305USA
| | | | - Xiaojun Han
- State Key Laboratory of Urban Water Resource and EnvironmentSchool of Chemistry and Chemical EngineeringHarbin Institute of Technology, China
| | - Mingdong Dong
- Interdisciplinary Nanoscience Center (iNANO)Aarhus University, Denmark
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6
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Dang N, Etienne M, Walcarius A, Liu L. Scanning Gel Electrochemical Microscopy (SGECM): Lateral Physical Resolution by Current and Shear Force Feedback. Anal Chem 2020; 92:6415-6422. [PMID: 32233427 DOI: 10.1021/acs.analchem.9b05538] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Scanning gel electrochemical microscopy (SGECM) is a novel technique measuring local electrochemistry based on a gel probe. The gel probe, which is fabricated by electrodeposition of hydrogel on a microdisk electrode, immobilizes the electrolyte, and constitutes a two-electrode system upon contact with the sample. The contact area determines the lateral physical resolution of the measurement, and considering the soft nature of the gel it is essential to be well analyzed. In this work, the lateral physical resolution of SGECM is quantitatively studied from two aspects: (1) marking single sampling points by locally oxidizing Ag to AgCl and measuring their size; (2) line scan over reference samples with periodic topography and composition. The gel probe is approached to the sample by either current or shear force feedback, and the physical resolution of them is compared. For the optimal gel probe based on 25 μm diameter Pt disk electrode of Rg ≈ 2, the lateral physical resolution of SGECM at contact position is ca. 50 μm for current feedback and ca. 63 μm for shear force feedback. More importantly, the lateral physical resolution of SGECM can be flexibly tuned in the range of 14-78 μm by pulling or pressing the gel probe after touching the sample. In general, current feedback is more sensitive to gel-sample contact than shear force feedback. But the latter is more versatile, which is also applicable to nonconductive samples.
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Affiliation(s)
- Ning Dang
- Université de Lorraine, CNRS, Laboratoire de Chimie Physique et Microbiologie pour les Matériaux et l'Environnement (LCPME), F-54000 Nancy, France
| | - Mathieu Etienne
- Université de Lorraine, CNRS, Laboratoire de Chimie Physique et Microbiologie pour les Matériaux et l'Environnement (LCPME), F-54000 Nancy, France
| | - Alain Walcarius
- Université de Lorraine, CNRS, Laboratoire de Chimie Physique et Microbiologie pour les Matériaux et l'Environnement (LCPME), F-54000 Nancy, France
| | - Liang Liu
- Université de Lorraine, CNRS, Laboratoire de Chimie Physique et Microbiologie pour les Matériaux et l'Environnement (LCPME), F-54000 Nancy, France
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7
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Sun L, Shigyou K, Ando T, Watanabe S. Thermally Driven Approach To Fill Sub-10-nm Pipettes with Batch Production. Anal Chem 2019; 91:14080-14084. [PMID: 31589026 DOI: 10.1021/acs.analchem.9b03848] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Typically, utilization of small nanopipettes results in either high sensitivity or spatial resolution in modern nanoscience and nanotechnology. However, filling a nanopipette with a sub-10-nm pore diameter remains a significant challenge. Here, we introduce a thermally driven approach to filling sub-10-nm pipettes with batch production, regardless of their shape. A temperature gradient is applied to transport water vapor from the backside of nanopipettes to the tip region until bubbles are completely removed from this region. The electrical contact and pore size for filling nanopipettes are confirmed by current-voltage and transmission electron microscopy (TEM) measurements, respectively. In addition, we quantitatively compare the pore size between the TEM characterization and estimation on the basis of pore radius and conductance. The validity of this method provides a foundation for highly sensitive detection of single molecules and high spatial resolution imaging of nanostructures.
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Affiliation(s)
- Linhao Sun
- Nano Life Science Institute (WPI-NanoLSI) , Kanazawa University , Kakuma-machi , Kanazawa 920-1192 , Japan
| | - Kazuki Shigyou
- Nano Life Science Institute (WPI-NanoLSI) , Kanazawa University , Kakuma-machi , Kanazawa 920-1192 , Japan
| | - Toshio Ando
- Nano Life Science Institute (WPI-NanoLSI) , Kanazawa University , Kakuma-machi , Kanazawa 920-1192 , Japan
| | - Shinji Watanabe
- Nano Life Science Institute (WPI-NanoLSI) , Kanazawa University , Kakuma-machi , Kanazawa 920-1192 , Japan
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8
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Kang G, Yang M, Mattei MS, Schatz GC, Van Duyne RP. In Situ Nanoscale Redox Mapping Using Tip-Enhanced Raman Spectroscopy. NANO LETTERS 2019; 19:2106-2113. [PMID: 30763517 DOI: 10.1021/acs.nanolett.9b00313] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Electrochemical atomic force microscopy tip-enhanced Raman spectroscopy (EC-AFM-TERS) was used for the first time to spatially resolve local heterogeneity in redox behavior on an electrode surface in situ and at the nanoscale. A structurally well-defined Au(111) nanoplate located on a polycrystalline ITO substrate was studied to examine nanoscale redox contrast across the two electrode materials. By monitoring the TERS intensity of adsorbed Nile Blue (NB) molecules on the electrode surface, TERS maps were acquired with different applied potentials. The EC-TERS maps showed a spatial contrast in TERS intensity between Au and ITO. TERS line scans near the edge of a 20 nm-thick Au nanoplate demonstrated a spatial resolution of 81 nm under an applied potential of -0.1 V vs Ag/AgCl. The intensities from the TERS maps at various applied potentials followed Nernstian behavior, and a formal potential ( E0') map was constructed by fitting the TERS intensity at each pixel to the Nernst equation. Clear nanoscale spatial contrast between the Au and ITO regions was observed in the E0' map. In addition, statistical analysis of the E0' map identified a statistically significant 4 mV difference in E0' on Au vs ITO. Electrochemical heterogeneity was also evident in the E0' distribution, as a bimodal distribution was observed in E0' on polycrystalline ITO, but not on gold. A direct comparison between an AFM friction image and the E0' map resolved the electrochemical behavior of individual ITO grains with a spatial resolution of ∼40 nm. The variation in E0' was attributed to different local surface charges on the ITO grains. Such site-specific electrochemical information with nanoscale spatial and few mV voltage resolutions is not available using ensemble spectroelectrochemical methods. We expect that in situ redox mapping at the nanoscale using EC-AFM-TERS will have a crucial impact on understanding the role of nanoscale surface features in applications such as electrocatalysis.
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Affiliation(s)
- Gyeongwon Kang
- Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States
| | - Muwen Yang
- Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States
| | - Michael S Mattei
- Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States
| | - George C Schatz
- Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States
| | - Richard P Van Duyne
- Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States
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9
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Bentley CL, Edmondson J, Meloni GN, Perry D, Shkirskiy V, Unwin PR. Nanoscale Electrochemical Mapping. Anal Chem 2018; 91:84-108. [PMID: 30500157 DOI: 10.1021/acs.analchem.8b05235] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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10
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Dang N, Etienne M, Walcarius A, Liu L. Scanning gel electrochemical microscopy (SGECM): The potentiometric measurements. Electrochem commun 2018. [DOI: 10.1016/j.elecom.2018.10.020] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
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11
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Mendonca T, Birkhead TR, Cadby AJ, Forstmeier W, Hemmings N. A trade-off between thickness and length in the zebra finch sperm mid-piece. Proc Biol Sci 2018; 285:rspb.2018.0865. [PMID: 30051869 PMCID: PMC6083248 DOI: 10.1098/rspb.2018.0865] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Accepted: 06/29/2018] [Indexed: 01/22/2023] Open
Abstract
The sperm mid-piece has traditionally been considered to be the engine that powers sperm. Larger mid-pieces have therefore been assumed to provide greater energetic capacity. However, in the zebra finch Taeniopygia guttata, a recent study showed a surprising negative relationship between mid-piece length and sperm energy content. Using a multi-dimensional approach to study mid-piece structure, we tested whether this unexpected relationship can be explained by a trade-off between mid-piece length and mid-piece thickness and/or cristae density inside the mitochondrial helix. We used selective plane illumination microscopy to study mid-piece structure from three-dimensional images of zebra finch sperm and used high-resolution transmission electron microscopy to quantify mitochondrial density. Contrary to the assumption that longer mid-pieces are larger and therefore produce or contain a greater amount of energy, our results indicate that the amount of mitochondrial material is consistent across mid-pieces of varying lengths, and longer mid-pieces are simply proportionately ‘thinner’.
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Affiliation(s)
- Tania Mendonca
- Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN, UK .,Department of Physics and Astronomy, University of Sheffield, Western Bank, Sheffield S10 2TN, UK
| | - Tim R Birkhead
- Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN, UK
| | - Ashley J Cadby
- Department of Physics and Astronomy, University of Sheffield, Western Bank, Sheffield S10 2TN, UK
| | - Wolfgang Forstmeier
- Department of Behavioural Ecology and Evolutionary Genetics, Max Planck Institute for Ornithology, Eberhard-Gwinner-Straße, 82319 Seewiesen, Germany
| | - Nicola Hemmings
- Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN, UK
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12
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Zhuang J, Wang Z, Li Z, Liang P, Vincent M. Smart Scanning Ion-Conductance Microscopy Imaging Technique Using Horizontal Fast Scanning Method. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2018; 24:264-276. [PMID: 29877171 DOI: 10.1017/s1431927618000375] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
To solve extended acquisition time issues inherent in the conventional hopping-scanning mode of scanning ion-conductance microscopy (SICM), a new transverse-fast scanning mode (TFSM) is proposed. Because the transverse motion in SICM is not the detection direction and therefore presents no collision problem, it has the ability to move at high speed. In TSFM, the SICM probe gradually descends in the vertical/detection direction and rapidly scans in the transverse/nondetection direction. Further, the highest point that decides the hopping height of each scanning line can be quickly obtained. In conventional hopping mode, however, the hopping height is artificially set without a priori knowledge and is typically very large. Consequently, TFSM greatly improves the scanning speed of the SICM imaging system by effectively reducing the hopping height of each pixel. This study verifies the feasibility of this novel scanning method via theoretical analysis and experimental study, and compares the speed and quality of the scanning images obtained in the TFSM with that of the conventional hopping mode. The experimental results indicate that the TFSM method has a faster scanning speed than other SICM scanning methods while maintaining the quality of the images. Therefore, TFSM provides the possibility to quickly obtain high-resolution three-dimensional topographical images of extremely complex samples.
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Affiliation(s)
- Jian Zhuang
- 1Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System,Xi'an Jiaotong University,Xi'an 710049,China
| | - Zhiwu Wang
- 1Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System,Xi'an Jiaotong University,Xi'an 710049,China
| | - Zeqing Li
- 2School of Mechanical Engineering,Xi'an Jiaotong University,Xi'an 710049,China
| | - Pengbo Liang
- 1Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System,Xi'an Jiaotong University,Xi'an 710049,China
| | - Mugubo Vincent
- 1Key Laboratory of Education Ministry for Modern Design Rotor-Bearing System,Xi'an Jiaotong University,Xi'an 710049,China
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13
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Gangotra A, Willmott GR. Scanning ion conductance microscopy mapping of tunable nanopore membranes. BIOMICROFLUIDICS 2017; 11:054102. [PMID: 28966699 PMCID: PMC5599259 DOI: 10.1063/1.4999488] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 09/06/2017] [Indexed: 06/07/2023]
Abstract
We report on the use of scanning ion conductance microscopy (SICM) for in-situ topographical mapping of single tunable nanopores, which are used for tunable resistive pulse sensing. A customised SICM system was used to map the elastomeric pore membranes repeatedly, using pipettes with tip opening diameters of approximately 50 nm and 1000 nm. The effect of variations on current threshold, scanning step size, and stretching has been studied. Lowering the current threshold increased the sensitivity of the pipette while scanning, up to the point where the tip contacted the surface. An increase in the pore area was observed as the step size was decreased, and with increased stretching. SICM reveals details of the electric field near the pore entrance, which is important for understanding measurements of submicron particles using resistive pulse sensing.
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14
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Affiliation(s)
- David Perry
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Dmitry Momotenko
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Robert A. Lazenby
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Minkyung Kang
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Patrick R. Unwin
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
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15
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Macazo F, White RJ. Bioinspired Protein Channel-Based Scanning Ion Conductance Microscopy (Bio-SICM) for Simultaneous Conductance and Specific Molecular Imaging. J Am Chem Soc 2016; 138:2793-801. [PMID: 26848947 PMCID: PMC4778544 DOI: 10.1021/jacs.5b13252] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Indexed: 01/24/2023]
Abstract
The utility of stochastic single-molecule detection using protein nanopores has found widespread application in bioanalytical sensing as a result of the inherent signal amplification of the resistive pulse method. Integration of protein nanopores with high-resolution scanning ion conductance microscopy (SICM) extends the utility of SICM by enabling selective chemical imaging of specific target molecules, while simultaneously providing topographical information about the net ion flux through a pore under a concentration gradient. In this study, we describe the development of a bioinspired scanning ion conductance microscopy (bio-SICM) approach that couples the imaging ability of SICM with the sensitivity and chemical selectivity of protein channels to perform simultaneous pore imaging and specific molecule mapping. To establish the framework of the bio-SICM platform, we utilize the well-studied protein channel α-hemolysin (αHL) to map the presence of β-cyclodextrin (βCD) at a substrate pore opening. We demonstrate concurrent pore and specific molecule imaging by raster scanning an αHL-based probe over a glass membrane containing a single 25-μm-diameter glass pore while recording the lateral positions of the probe and channel activity via ionic current. We use the average channel current to create a conductance image and the raw current-time traces to determine spatial localization of βCD. With further optimization, we believe that the bio-SICM platform will provide a powerful analytical methodology that is generalizable, and thus offers significant utility in a myriad of bioanalytical applications.
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Affiliation(s)
- Florika
C. Macazo
- Department
of Chemistry and Biochemistry, University
of Maryland Baltimore County, Baltimore, Maryland 21250, United States
| | - Ryan J. White
- Department
of Chemistry and Biochemistry, University
of Maryland Baltimore County, Baltimore, Maryland 21250, United States
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16
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Perry D, Paulose Nadappuram B, Momotenko D, Voyias PD, Page A, Tripathi G, Frenguelli BG, Unwin PR. Surface Charge Visualization at Viable Living Cells. J Am Chem Soc 2016; 138:3152-60. [DOI: 10.1021/jacs.5b13153] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- David Perry
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Binoy Paulose Nadappuram
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Dmitry Momotenko
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Philip D. Voyias
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Ashley Page
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Gyanendra Tripathi
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Bruno G. Frenguelli
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Patrick R. Unwin
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
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17
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Perry D, Al Botros R, Momotenko D, Kinnear SL, Unwin PR. Simultaneous Nanoscale Surface Charge and Topographical Mapping. ACS NANO 2015; 9:7266-7276. [PMID: 26132922 DOI: 10.1021/acsnano.5b02095] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Nanopipettes are playing an increasingly prominent role in nanoscience, for sizing, sequencing, delivery, detection, and mapping interfacial properties. Herein, the question of how to best resolve topography and surface charge effects when using a nanopipette as a probe for mapping in scanning ion conductance microscopy (SICM) is addressed. It is shown that, when a bias modulated (BM) SICM scheme is used, it is possible to map the topography faithfully, while also allowing surface charge to be estimated. This is achieved by applying zero net bias between the electrode in the SICM tip and the one in bulk solution for topographical mapping, with just a small harmonic perturbation of the potential to create an AC current for tip positioning. Then, a net bias is applied, whereupon the ion conductance current becomes sensitive to surface charge. Practically this is optimally implemented in a hopping-cyclic voltammetry mode where the probe is approached at zero net bias at a series of pixels across the surface to reach a defined separation, and then a triangular potential waveform is applied and the current response is recorded. Underpinned with theoretical analysis, including finite element modeling of the DC and AC components of the ionic current flowing through the nanopipette tip, the powerful capabilities of this approach are demonstrated with the probing of interfacial acid-base equilibria and high resolution imaging of surface charge heterogeneities, simultaneously with topography, on modified substrates.
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Affiliation(s)
- David Perry
- †Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Rehab Al Botros
- †Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Dmitry Momotenko
- †Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Sophie L Kinnear
- †Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Patrick R Unwin
- †Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
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18
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Jung GE, Noh H, Shin YK, Kahng SJ, Baik KY, Kim HB, Cho NJ, Cho SJ. Closed-loop ARS mode for scanning ion conductance microscopy with improved speed and stability for live cell imaging applications. NANOSCALE 2015; 7:10989-97. [PMID: 25959131 DOI: 10.1039/c5nr01577d] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Scanning ion conductance microscopy (SICM) is an increasingly useful nanotechnology tool for non-contact, high resolution imaging of live biological specimens such as cellular membranes. In particular, approach-retract-scanning (ARS) mode enables fast probing of delicate biological structures by rapid and repeated approach/retraction of a nano-pipette tip. For optimal performance, accurate control of the tip position is a critical issue. Herein, we present a novel closed-loop control strategy for the ARS mode that achieves higher operating speeds with increased stability. The algorithm differs from that of most conventional (i.e., constant velocity) approach schemes as it includes a deceleration phase near the sample surface, which is intended to minimize the possibility of contact with the surface. Analysis of the ion current and tip position demonstrates that the new mode is able to operate at approach speeds of up to 250 μm s(-1). As a result of the improved stability, SICM imaging with the new approach scheme enables significantly improved, high resolution imaging of subtle features of fixed and live cells (e.g., filamentous structures & membrane edges). Taken together, the results suggest that optimization of the tip approach speed can substantially improve SICM imaging performance, further enabling SICM to become widely adopted as a general and versatile research tool for biological studies at the nanoscale level.
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Affiliation(s)
- Goo-Eun Jung
- Research and Development Center, Park Systems, Suwon 443-270, Korea.
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19
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Laohakunakorn N, Thacker VV, Muthukumar M, Keyser UF. Electroosmotic flow reversal outside glass nanopores. NANO LETTERS 2015; 15:695-702. [PMID: 25490120 PMCID: PMC4296923 DOI: 10.1021/nl504237k] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Revised: 12/05/2014] [Indexed: 05/02/2023]
Abstract
We report observations of a striking reversal in the direction of electroosmotic flow (EOF) outside a conical glass nanopore as a function of salt concentration. At high ionic strengths (>100 mM), we observe EOF in the expected direction as predicted by classical electrokinetic theory, while at low salt concentrations (<1 mM) the direction of the flow is reversed. The critical crossover salt concentration depends on the pore diameter. Finite-element simulations indicate a competition between the EOF generated from the inner and outer walls of the pore, which drives flows in opposite directions. We have developed a simple analytical model which reveals that, as the salt concentration is reduced, the flow rates inside the pore are geometrically constrained, whereas there is no such limit for flows outside the pore. This model captures all of the essential physics of the system and explains the observed data, highlighting the key role the external environment plays in determining the overall electroosmotic behavior.
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Affiliation(s)
| | - Vivek V. Thacker
- Cavendish Laboratory, University of Cambridge, Cambridge CB3 0HE, United Kingdom
| | - Murugappan Muthukumar
- Department of Polymer Science and Engineering, University of Massachusetts Amherst, 120 Governors Drive, Amherst, Massachusetts 01003, United States
| | - Ulrich F. Keyser
- Cavendish Laboratory, University of Cambridge, Cambridge CB3 0HE, United Kingdom
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20
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Sze JYY, Kumar S, Ivanov AP, Oh SH, Edel JB. Fine tuning of nanopipettes using atomic layer deposition for single molecule sensing. Analyst 2015; 140:4828-34. [DOI: 10.1039/c5an01001b] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
ALD modified pipettes provides a quick and efficient method for fine-tuning the nanopore diameter which can be used for a broad range of applications including the detection of small biomolecules at the single molecule level.
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Affiliation(s)
| | - Shailabh Kumar
- Department of Biomedical Engineering
- University of Minnesota
- Minneapolis
- USA
- Department of Electrical and Computer engineering
| | | | - Sang-Hyun Oh
- Department of Biomedical Engineering
- University of Minnesota
- Minneapolis
- USA
- Department of Electrical and Computer engineering
| | - Joshua B. Edel
- Department of Chemistry
- Imperial College London
- London SW7 2AZ
- UK
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21
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Clausmeyer J, Henig J, Schuhmann W, Plumeré N. Scanning Droplet Cell for Chemoselective Patterning through Local Electroactivation of Protected Quinone Monolayers. Chemphyschem 2013; 15:151-6. [DOI: 10.1002/cphc.201300937] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2013] [Indexed: 01/19/2023]
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22
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Clarke RW, Zhukov A, Richards O, Johnson N, Ostanin V, Klenerman D. Pipette–Surface Interaction: Current Enhancement and Intrinsic Force. J Am Chem Soc 2012; 135:322-9. [DOI: 10.1021/ja3094586] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Richard W. Clarke
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United
Kingdom
| | - Alexander Zhukov
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United
Kingdom
| | - Owen Richards
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United
Kingdom
| | - Nicholas Johnson
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United
Kingdom
| | - Victor Ostanin
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United
Kingdom
| | - David Klenerman
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United
Kingdom
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23
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Takahashi Y, Shevchuk AI, Novak P, Zhang Y, Ebejer N, Macpherson JV, Unwin PR, Pollard AJ, Roy D, Clifford CA, Shiku H, Matsue T, Klenerman D, Korchev YE. Multifunctional nanoprobes for nanoscale chemical imaging and localized chemical delivery at surfaces and interfaces. Angew Chem Int Ed Engl 2011; 50:9638-42. [PMID: 21882305 DOI: 10.1002/anie.201102796] [Citation(s) in RCA: 227] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Revised: 07/14/2010] [Indexed: 02/03/2023]
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24
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Takahashi Y, Shevchuk AI, Novak P, Zhang Y, Ebejer N, Macpherson JV, Unwin PR, Pollard AJ, Roy D, Clifford CA, Shiku H, Matsue T, Klenerman D, Korchev YE. Multifunctional Nanoprobes for Nanoscale Chemical Imaging and Localized Chemical Delivery at Surfaces and Interfaces. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201102796] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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