1
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Wootten MM, Tshepelevitsh S, Leito I, Clayden J. A Chemically Fuelled Molecular Automaton Displaying Programmed Migration of Zn 2+ Between Alternative Binding Sites. Chemistry 2022; 28:e202202247. [PMID: 35880579 PMCID: PMC9804598 DOI: 10.1002/chem.202202247] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Indexed: 01/05/2023]
Abstract
A molecular system comprising a cationic zinc complex and an amino acid-derived ambident ligand having phosphate and carboxylate binding sites undergoes a series of rearrangements in which the metal cation migrates autonomously from one site to another. The location of the metal is identified by the circular dichroism spectrum of a ligated bis(2-quinolylmethyl)-(2-pyridylmethyl)amine (BQPA) chromophore, which takes a characteristic shape at each binding site. Migration is fuelled by the decomposition of trichloroacetic acid to CO2 and CHCl3 , which progressively neutralises the acidity of the system as a function of time, revealing in sequence binding sites of increasing basicity. The migration rate responds to control by variation of the temperature, water content and triethylamine concentration, while an excess of fuel controls the duration of an induction period before the migration event.
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Affiliation(s)
| | | | - Ivo Leito
- Institute of ChemistryUniversity of TartuRavila 14aTartu50411Estonia
| | - Jonathan Clayden
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
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2
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Catalytic Peptides: the Challenge between Simplicity and Functionality. Isr J Chem 2022. [DOI: 10.1002/ijch.202200029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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3
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Del Grosso E, Ponzo I, Ragazzon G, Prins LJ, Ricci F. Disulfide‐Linked Allosteric Modulators for Multi‐cycle Kinetic Control of DNA‐Based Nanodevices. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008007] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Erica Del Grosso
- Department of Chemistry University of Rome Tor Vergata Via della Ricerca Scientifica 1 00133 Rome Italy
| | - Irene Ponzo
- Department of Chemistry University of Rome Tor Vergata Via della Ricerca Scientifica 1 00133 Rome Italy
| | - Giulio Ragazzon
- Department of Chemical and Pharmaceutical Sciences University of Trieste Via L. Giorgieri 1 34127 Trieste Italy
| | - Leonard J. Prins
- Department of Chemical Sciences University of Padua Via Marzolo 1 35131 Padua Italy
| | - Francesco Ricci
- Department of Chemistry University of Rome Tor Vergata Via della Ricerca Scientifica 1 00133 Rome Italy
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4
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Del Grosso E, Ponzo I, Ragazzon G, Prins LJ, Ricci F. Disulfide‐Linked Allosteric Modulators for Multi‐cycle Kinetic Control of DNA‐Based Nanodevices. Angew Chem Int Ed Engl 2020; 59:21058-21063. [DOI: 10.1002/anie.202008007] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 08/02/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Erica Del Grosso
- Department of Chemistry University of Rome Tor Vergata Via della Ricerca Scientifica 1 00133 Rome Italy
| | - Irene Ponzo
- Department of Chemistry University of Rome Tor Vergata Via della Ricerca Scientifica 1 00133 Rome Italy
| | - Giulio Ragazzon
- Department of Chemical and Pharmaceutical Sciences University of Trieste Via L. Giorgieri 1 34127 Trieste Italy
| | - Leonard J. Prins
- Department of Chemical Sciences University of Padua Via Marzolo 1 35131 Padua Italy
| | - Francesco Ricci
- Department of Chemistry University of Rome Tor Vergata Via della Ricerca Scientifica 1 00133 Rome Italy
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5
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Hwang W, Yoo J, Hwang I, Lee J, Ko YH, Kim HW, Kim Y, Lee Y, Hur MY, Park KM, Seo J, Baek K, Kim K. Hierarchical Self‐Assembly of Poly‐Pseudorotaxanes into Artificial Microtubules. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201913384] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Wooseup Hwang
- Department of ChemistryPohang University of Science and Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Jejoong Yoo
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - In‐Chul Hwang
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - Jiyeon Lee
- Department of ChemistryPohang University of Science and Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Young Ho Ko
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - Hyun Woo Kim
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - Younghoon Kim
- Department of ChemistryPohang University of Science and Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Yeonsang Lee
- Department of ChemistryPohang University of Science and Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Moon Young Hur
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - Kyeng Min Park
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - Jongcheol Seo
- Department of ChemistryPohang University of Science and Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Kangkyun Baek
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
| | - Kimoon Kim
- Center for Self-assembly and Complexity (CSC)Institute for Basic Science (IBS) Pohang 37673 Republic of Korea
- Department of ChemistryPohang University of Science and Technology (POSTECH) Pohang 37673 Republic of Korea
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6
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Hwang W, Yoo J, Hwang IC, Lee J, Ko YH, Kim HW, Kim Y, Lee Y, Hur MY, Park KM, Seo J, Baek K, Kim K. Hierarchical Self-Assembly of Poly-Pseudorotaxanes into Artificial Microtubules. Angew Chem Int Ed Engl 2020; 59:3460-3464. [PMID: 31863556 DOI: 10.1002/anie.201913384] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2019] [Revised: 12/20/2019] [Indexed: 12/14/2022]
Abstract
Hierarchical self-assembly of building blocks over multiple length scales is ubiquitous in living organisms. Microtubules are one of the principal cellular components formed by hierarchical self-assembly of nanometer-sized tubulin heterodimers into protofilaments, which then associate to form micron-length-scale, multi-stranded tubes. This peculiar biological process is now mimicked with a fully synthetic molecule, which forms a 1:1 host-guest complex with cucurbit[7]uril as a globular building block, and then polymerizes into linear poly-pseudorotaxanes that associate laterally with each other in a self-shape-complementary manner to form a tubular structure with a length over tens of micrometers. Molecular dynamic simulations suggest that the tubular assembly consists of eight poly-pseudorotaxanes that wind together to form a 4.5 nm wide multi-stranded tubule.
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Affiliation(s)
- Wooseup Hwang
- Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Jejoong Yoo
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - In-Chul Hwang
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - Jiyeon Lee
- Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Young Ho Ko
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - Hyun Woo Kim
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - Younghoon Kim
- Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Yeonsang Lee
- Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Moon Young Hur
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - Kyeng Min Park
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - Jongcheol Seo
- Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Kangkyun Baek
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea
| | - Kimoon Kim
- Center for Self-assembly and Complexity (CSC), Institute for Basic Science (IBS), Pohang, 37673, Republic of Korea.,Department of Chemistry, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
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7
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Sabatino A, Penocchio E, Ragazzon G, Credi A, Frezzato D. Individual‐Molecule Perspective Analysis of Chemical Reaction Networks: The Case of a Light‐Driven Supramolecular Pump. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908026] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Andrea Sabatino
- Dipartimento di Scienze Chimiche Università degli Studi di Padova Via Marzolo 1 35131 Padova Italy
| | - Emanuele Penocchio
- Complex Systems and Statistical Mechanics, Physics and Materials Science Unit University of Luxembourg 162 A, avenue de la Faïencerie 1511 Luxembourg Luxembourg
| | - Giulio Ragazzon
- Department of Chemical and Pharmaceutical Sciences Università degli Studi di Trieste via Giorgieri 1 34127 Trieste Italy
| | - Alberto Credi
- Center for Light Activated Nanostructures (CLAN) Dipartimento di Scienze e Tecnologie Agro-alimentari Università di Bologna, and Istituto ISOF Consiglio Nazionale delle Ricerche Via Gobetti 101 40129 Bologna Italy
| | - Diego Frezzato
- Dipartimento di Scienze Chimiche Università degli Studi di Padova Via Marzolo 1 35131 Padova Italy
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8
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Sabatino A, Penocchio E, Ragazzon G, Credi A, Frezzato D. Individual-Molecule Perspective Analysis of Chemical Reaction Networks: The Case of a Light-Driven Supramolecular Pump. Angew Chem Int Ed Engl 2019; 58:14341-14348. [PMID: 31379048 PMCID: PMC6899705 DOI: 10.1002/anie.201908026] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Indexed: 11/10/2022]
Abstract
The first study in which stochastic simulations of a two‐component molecular machine are performed in the mass‐action regime is presented. This system is an autonomous molecular pump consisting of a photoactive axle that creates a directed flow of rings through it by exploiting light energy away from equilibrium. The investigation demonstrates that the pump can operate in two regimes, both experimentally accessible, in which light‐driven steps can be rate‐determining or not. The number of photons exploited by an individual molecular pump, as well as the precision of cycling and the overall efficiency, critically rely on the operating regime of the machine. This approach provides useful information not only to guide the chemical design of a self‐assembling molecular device with desired features, but also to elucidate the effect of the environment on its performance, thus facilitating its experimental investigation.
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Affiliation(s)
- Andrea Sabatino
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131, Padova, Italy
| | - Emanuele Penocchio
- Complex Systems and Statistical Mechanics, Physics and Materials Science Unit, University of Luxembourg, 162 A, avenue de la Faïencerie, 1511, Luxembourg, Luxembourg
| | - Giulio Ragazzon
- Department of Chemical and Pharmaceutical Sciences, Università degli Studi di Trieste, via Giorgieri 1, 34127, Trieste, Italy
| | - Alberto Credi
- Center for Light Activated Nanostructures (CLAN), Dipartimento di Scienze e Tecnologie Agro-alimentari, Università di Bologna, and Istituto ISOF, Consiglio Nazionale delle Ricerche, Via Gobetti 101, 40129, Bologna, Italy
| | - Diego Frezzato
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131, Padova, Italy
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9
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Biagini C, Fielden SDP, Leigh DA, Schaufelberger F, Di Stefano S, Thomas D. Dissipative Catalysis with a Molecular Machine. Angew Chem Int Ed Engl 2019; 58:9876-9880. [PMID: 31111628 PMCID: PMC6900173 DOI: 10.1002/anie.201905250] [Citation(s) in RCA: 97] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Indexed: 11/29/2022]
Abstract
We report on catalysis by a fuel-induced transient state of a synthetic molecular machine. A [2]rotaxane molecular shuttle containing secondary ammonium/amine and thiourea stations is converted between catalytically inactive and active states by pulses of a chemical fuel (trichloroacetic acid), which is itself decomposed by the machine and/or the presence of additional base. The ON-state of the rotaxane catalyzes the reduction of a nitrostyrene by transfer hydrogenation. By varying the amount of fuel added, the lifetime of the rotaxane ON-state can be regulated and temporal control of catalysis achieved. The system can be pulsed with chemical fuel several times in succession, with each pulse activating catalysis for a time period determined by the amount of fuel added. Dissipative catalysis by synthetic molecular machines has implications for the future design of networks that feature communication and signaling between the components.
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Affiliation(s)
- Chiara Biagini
- School of ChemistryUniversity of ManchesterOxford RoadM13 9PLManchesterUK
- Edificio Cannizzaro (VEC)Dipartimento di ChimicaUniversità degli Studi di Roma “La Sapienza”Piazzale Aldo Moro 500185RomaItaly
| | | | - David A. Leigh
- School of ChemistryUniversity of ManchesterOxford RoadM13 9PLManchesterUK
| | | | - Stefano Di Stefano
- Edificio Cannizzaro (VEC)Dipartimento di ChimicaUniversità degli Studi di Roma “La Sapienza”Piazzale Aldo Moro 500185RomaItaly
| | - Dean Thomas
- School of ChemistryUniversity of ManchesterOxford RoadM13 9PLManchesterUK
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10
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Biagini C, Fielden SDP, Leigh DA, Schaufelberger F, Di Stefano S, Thomas D. Dissipative Catalysis with a Molecular Machine. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201905250] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Chiara Biagini
- School of ChemistryUniversity of Manchester Oxford Road M13 9PL Manchester UK
- Edificio Cannizzaro (VEC)Dipartimento di ChimicaUniversità degli Studi di Roma “La Sapienza” Piazzale Aldo Moro 5 00185 Roma Italy
| | | | - David A. Leigh
- School of ChemistryUniversity of Manchester Oxford Road M13 9PL Manchester UK
| | | | - Stefano Di Stefano
- Edificio Cannizzaro (VEC)Dipartimento di ChimicaUniversità degli Studi di Roma “La Sapienza” Piazzale Aldo Moro 5 00185 Roma Italy
| | - Dean Thomas
- School of ChemistryUniversity of Manchester Oxford Road M13 9PL Manchester UK
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11
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Kroiss D, Aramini JM, McPhee SA, Tuttle T, Ulijn RV. Unbiased Discovery of Dynamic Peptide‐ATP Complexes. CHEMSYSTEMSCHEM 2019. [DOI: 10.1002/syst.201900013] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Daniela Kroiss
- Nanoscience Initiative at Advanced Science Research Center (ASRC)The Graduate Center of the City University of New York 85 St. Nicholas Terrace New York NY 10031 USA
- Ph.D. Programs in Biochemistry and ChemistryThe Graduate Center of the City University of New York 365 Fifth Avenue New York NY 10016 USA
- Department of ChemistryHunter College, City University of New York 695 Park Avenue New York NY 10065 USA
| | - James M. Aramini
- Structural Biology Initiative at ASRCThe Graduate Center of the City University of New York 85 St. Nicholas Terrace New York NY 10031 USA
| | - Scott A. McPhee
- Nanoscience Initiative at Advanced Science Research Center (ASRC)The Graduate Center of the City University of New York 85 St. Nicholas Terrace New York NY 10031 USA
| | - Tell Tuttle
- WestCHEM and Department of Pure and Applied ChemistryUniversity of Strathclyde 295 Cathedral Street Glasgow G1 1XL UK
| | - Rein V. Ulijn
- Nanoscience Initiative at Advanced Science Research Center (ASRC)The Graduate Center of the City University of New York 85 St. Nicholas Terrace New York NY 10031 USA
- Ph.D. Programs in Biochemistry and ChemistryThe Graduate Center of the City University of New York 365 Fifth Avenue New York NY 10016 USA
- Department of ChemistryHunter College, City University of New York 695 Park Avenue New York NY 10065 USA
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12
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Nguyen R, Jouault N, Zanirati S, Rawiso M, Allouche L, Buhler E, Giuseppone N. Autopoietic Behavior of Dynamic Covalent Amphiphiles. Chemistry 2018; 24:17125-17137. [PMID: 30144185 DOI: 10.1002/chem.201803833] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Indexed: 01/06/2023]
Abstract
The condensation of aldehydes and amines in water to give amphiphilic imines can lead to a particular autocatalytic behavior known as autopoiesis, in which the closed micellar structure made by the amphiphile at the mesoscale can accelerate the condensation of its constituents. Herein, through a combination of analytical tools, including diffusion ordered spectroscopy (DOSY) as well as light, neutron, and X-ray scattering techniques, the thermodynamic and kinetic parameters were probed at both the level of dynamic covalent imine bond formation and the level of the resulting micellar self-assemblies. It was found that the autopoietic behavior was the result of a combination of several parameters, including solubilization of hydrophobic building blocks, template effect at the core-shell interface, and growth/division cycles of the micellar objects.
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Affiliation(s)
- Rémi Nguyen
- Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, BP 84047, 67034, Strasbourg Cedex 2, France
| | - Nicolas Jouault
- Matière et Systèmes Complexes (MSC) Laboratory, UMR 7057, Sorbonne Paris Cité, University of Paris Diderot-Paris VII, Bâtiment Condorcet, 10 rue Alice Domon et Léonie Duquet., 75205, Paris Cedex 13, France
- Sorbonne Université, CNRS, Laboratoire PHysicochimie des, Electrolytes et des Nanosytèmes InterfaciauX, PHENIX, 75005, Paris, France
| | - Stefano Zanirati
- Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, BP 84047, 67034, Strasbourg Cedex 2, France
| | - Michel Rawiso
- Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, BP 84047, 67034, Strasbourg Cedex 2, France
| | - Lionel Allouche
- Institut de Chimie, Service de RMN, Université Louis Pasteur, 1 rue Blaise Pascal, 67008, Strasbourg Cedex, France
| | - Eric Buhler
- Matière et Systèmes Complexes (MSC) Laboratory, UMR 7057, Sorbonne Paris Cité, University of Paris Diderot-Paris VII, Bâtiment Condorcet, 10 rue Alice Domon et Léonie Duquet., 75205, Paris Cedex 13, France
| | - Nicolas Giuseppone
- Institut Charles Sadron, CNRS, University of Strasbourg, 23 rue du Loess, BP 84047, 67034, Strasbourg Cedex 2, France
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13
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Del Grosso E, Amodio A, Ragazzon G, Prins LJ, Ricci F. Dissipative Synthetic DNA‐Based Receptors for the Transient Loading and Release of Molecular Cargo. Angew Chem Int Ed Engl 2018; 57:10489-10493. [DOI: 10.1002/anie.201801318] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Indexed: 12/20/2022]
Affiliation(s)
- Erica Del Grosso
- Dipartimento di Scienze e Tecnologie ChimicheUniversity of Rome Tor Vergata Via della Ricerca Scientifica Rome 00133 Italy
| | - Alessia Amodio
- Dipartimento di Scienze e Tecnologie ChimicheUniversity of Rome Tor Vergata Via della Ricerca Scientifica Rome 00133 Italy
| | - Giulio Ragazzon
- Department of Chemical SciencesUniversity of Padua Via Marzolo 1 35131 Padua Italy
| | - Leonard J. Prins
- Department of Chemical SciencesUniversity of Padua Via Marzolo 1 35131 Padua Italy
| | - Francesco Ricci
- Dipartimento di Scienze e Tecnologie ChimicheUniversity of Rome Tor Vergata Via della Ricerca Scientifica Rome 00133 Italy
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14
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Del Grosso E, Amodio A, Ragazzon G, Prins LJ, Ricci F. Dissipative Synthetic DNA‐Based Receptors for the Transient Loading and Release of Molecular Cargo. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201801318] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Erica Del Grosso
- Dipartimento di Scienze e Tecnologie ChimicheUniversity of Rome Tor Vergata Via della Ricerca Scientifica Rome 00133 Italy
| | - Alessia Amodio
- Dipartimento di Scienze e Tecnologie ChimicheUniversity of Rome Tor Vergata Via della Ricerca Scientifica Rome 00133 Italy
| | - Giulio Ragazzon
- Department of Chemical SciencesUniversity of Padua Via Marzolo 1 35131 Padua Italy
| | - Leonard J. Prins
- Department of Chemical SciencesUniversity of Padua Via Marzolo 1 35131 Padua Italy
| | - Francesco Ricci
- Dipartimento di Scienze e Tecnologie ChimicheUniversity of Rome Tor Vergata Via della Ricerca Scientifica Rome 00133 Italy
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15
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Yang L, Liu A, Cao S, Putri RM, Jonkheijm P, Cornelissen JJLM. Self-Assembly of Proteins: Towards Supramolecular Materials. Chemistry 2016; 22:15570-15582. [DOI: 10.1002/chem.201601943] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Indexed: 12/30/2022]
Affiliation(s)
- Liulin Yang
- Laboratory for Biomolecular Nanotechnology; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
- Molecular Nanofabrication Group; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
| | - Aijie Liu
- Laboratory for Biomolecular Nanotechnology; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
| | - Shuqin Cao
- Laboratory for Biomolecular Nanotechnology; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
| | - Rindia M. Putri
- Laboratory for Biomolecular Nanotechnology; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
| | - Pascal Jonkheijm
- Molecular Nanofabrication Group; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
| | - Jeroen J. L. M. Cornelissen
- Laboratory for Biomolecular Nanotechnology; MESA+ Institute for Nanotechnology; University of Twente; P.O. Box 217 7500 AE Enschede The Netherlands
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16
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Kuang Y, Shi J, Li J, Yuan D, Alberti KA, Xu Q, Xu B. Pericellular hydrogel/nanonets inhibit cancer cells. Angew Chem Int Ed Engl 2014; 53:8104-7. [PMID: 24820524 PMCID: PMC4116430 DOI: 10.1002/anie.201402216] [Citation(s) in RCA: 260] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2014] [Indexed: 11/11/2022]
Abstract
Fibrils formed by proteins are vital components for cells. However, selective formation of xenogenous nanofibrils of small molecules on mammalian cells has yet to be observed. Here we report an unexpected observation of hydrogel/nanonets of a small D-peptide derivative in pericellular space. Surface and secretory phosphatases dephosphorylate a precursor of a hydrogelator to trigger the self-assembly of the hydrogelator and to result in pericellular hydrogel/nanonets selectively around the cancer cells that overexpress phosphatases. Cell-based assays confirm that the pericellular hydrogel/nanonets block cellular mass exchange to induce apoptosis of cancer cells, including multidrug-resistance (MDR) cancer cells, MES-SA/Dx5. Pericellular hydrogel/nanonets of small molecules to exhibit distinct functions illustrates a fundamentally new way to engineer molecular assemblies spatiotemporally in cellular microenvironment for inhibiting cancer cell growth and even metastasis.
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Affiliation(s)
- Yi Kuang
- Department of Chemistry, Brandeis University, 415 South St, Waltham, MA 02454, USA, Fax: (+) 1-781-736-2516, Homepage: http://people.brandeis.edu/~bxu
| | - Junfeng Shi
- Department of Chemistry, Brandeis University, 415 South St, Waltham, MA 02454, USA, Fax: (+) 1-781-736-2516, Homepage: http://people.brandeis.edu/~bxu
| | - Jie Li
- Department of Chemistry, Brandeis University, 415 South St, Waltham, MA 02454, USA, Fax: (+) 1-781-736-2516, Homepage: http://people.brandeis.edu/~bxu
| | - Dan Yuan
- Department of Chemistry, Brandeis University, 415 South St, Waltham, MA 02454, USA, Fax: (+) 1-781-736-2516, Homepage: http://people.brandeis.edu/~bxu
| | - Kyle A. Alberti
- Department of Biomedical Engineering, Tufts University, 419 Boston Ave, Medford, MA 02155, USA
| | - Qiaobing Xu
- Department of Biomedical Engineering, Tufts University, 419 Boston Ave, Medford, MA 02155, USA
| | - Bing Xu
- Department of Chemistry, Brandeis University, 415 South St, Waltham, MA 02454, USA, Fax: (+) 1-781-736-2516, Homepage: http://people.brandeis.edu/~bxu
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Kuang Y, Shi J, Li J, Yuan D, Alberti KA, Xu Q, Xu B. Pericellular Hydrogel/Nanonets Inhibit Cancer Cells. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201402216] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Nebot VJ, Díaz-Oltra S, Smets J, Fernández Prieto S, Miravet JF, Escuder B. Freezing Capture of Polymorphic Aggregates of BolaamphiphilicL-Valine-Based Molecular Hydrogelators. Chemistry 2014; 20:5762-7. [DOI: 10.1002/chem.201400346] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Indexed: 01/20/2023]
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Solvent- and Light-Controlled Unidirectional Transit of a Nonsymmetric Molecular Axle Through a Nonsymmetric Molecular Wheel. Chemistry 2012; 18:16203-13. [DOI: 10.1002/chem.201201625] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 08/06/2012] [Indexed: 11/07/2022]
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Du G, Moulin E, Jouault N, Buhler E, Giuseppone N. Muscle-like Supramolecular Polymers: Integrated Motion from Thousands of Molecular Machines. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201206571] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Du G, Moulin E, Jouault N, Buhler E, Giuseppone N. Muscle-like supramolecular polymers: integrated motion from thousands of molecular machines. Angew Chem Int Ed Engl 2012; 51:12504-8. [PMID: 23081866 DOI: 10.1002/anie.201206571] [Citation(s) in RCA: 187] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2012] [Indexed: 11/06/2022]
Abstract
Pumping iron: Double-threaded rotaxanes can be linked to coordination units and polymerized in the presence of iron or zinc ions. pH modulation triggers cooperative contractions (or extensions) of the individual rotaxanes, thus resulting in an amplified motion of the muscle-like supramolecular chains with changes of their contour lengths of several micrometers (see picture).
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Affiliation(s)
- Guangyan Du
- SAMS Research Group, University of Strasbourg, Institut Charles Sadron, CNRS, 23 rue du Loess, BP 84047, 67034 Strasbourg Cedex 2, France
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Baroncini M, Silvi S, Venturi M, Credi A. Photoactivated Directionally Controlled Transit of a Non-Symmetric Molecular Axle Through a Macrocycle. Angew Chem Int Ed Engl 2012; 51:4223-6. [DOI: 10.1002/anie.201200555] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2012] [Indexed: 11/11/2022]
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Baroncini M, Silvi S, Venturi M, Credi A. Photoactivated Directionally Controlled Transit of a Non-Symmetric Molecular Axle Through a Macrocycle. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201200555] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Liu Y, Tang Z. Nanoscale Biocoordination Polymers: Novel Materials from an Old Topic. Chemistry 2012; 18:1030-7. [DOI: 10.1002/chem.201101520] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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25
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Gawęda S, Kowalik R, Kwolek P, Macyk W, Mech J, Oszajca M, Podborska A, Szaciłowski K. Nanoscale Digital Devices Based on the Photoelectrochemical Photocurrent Switching Effect: Preparation, Properties and Applications. Isr J Chem 2011. [DOI: 10.1002/ijch.201000057] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Moulin E, Niess F, Maaloum M, Buhler E, Nyrkova I, Giuseppone N. The hierarchical self-assembly of charge nanocarriers: a highly cooperative process promoted by visible light. Angew Chem Int Ed Engl 2011; 49:6974-8. [PMID: 20645369 DOI: 10.1002/anie.201001833] [Citation(s) in RCA: 89] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Emilie Moulin
- SAMS research group-icFRC, Institut Charles Sadron-CNRS, University of Strasbourg, 23 rue du Loess, BP 84087, 67034 Strasbourg Cedex 2, France
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Lambert EM, Viravaidya C, Li M, Mann S. Microemulsion-mediated self-assembly and silicification of mesostructured ferritin nanocrystals. Angew Chem Int Ed Engl 2010; 49:4100-3. [PMID: 20425877 DOI: 10.1002/anie.201001043] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Elizabeth M Lambert
- Centre for Organized Matter Chemistry, School of Chemistry, University of Bristol, Bristol, BS8 1TS, UK
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28
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Moulin E, Niess F, Maaloum M, Buhler E, Nyrkova I, Giuseppone N. The Hierarchical Self-Assembly of Charge Nanocarriers: A Highly Cooperative Process Promoted by Visible Light. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201001833] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Palmer B, Harris K, Guillaume F. A Strategy for Retrospectively Mapping the Growth History of a Crystal. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201000952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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30
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Palmer BA, Harris KDM, Guillaume F. A Strategy for Retrospectively Mapping the Growth History of a Crystal. Angew Chem Int Ed Engl 2010; 49:5096-100. [PMID: 20607872 DOI: 10.1002/anie.201000952] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Benjamin A Palmer
- School of Chemistry, Cardiff University, Park Place, Cardiff CF10 3AT, Wales, UK
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31
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Lambert E, Viravaidya C, Li M, Mann S. Microemulsion-Mediated Self-Assembly and Silicification of Mesostructured Ferritin Nanocrystals. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201001043] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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32
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Nguyen R, Allouche L, Buhler E, Giuseppone N. Dynamic Combinatorial Evolution within Self-Replicating Supramolecular Assemblies. Angew Chem Int Ed Engl 2009; 48:1093-6. [DOI: 10.1002/anie.200804602] [Citation(s) in RCA: 158] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Nguyen R, Allouche L, Buhler E, Giuseppone N. Dynamic Combinatorial Evolution within Self-Replicating Supramolecular Assemblies. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200804602] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Price A, Zelikin A, Wang Y, Caruso F. Triggered Enzymatic Degradation of DNA within Selectively Permeable Polymer Capsule Microreactors. Angew Chem Int Ed Engl 2009; 48:329-32. [DOI: 10.1002/anie.200804763] [Citation(s) in RCA: 95] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Price A, Zelikin A, Wang Y, Caruso F. Triggered Enzymatic Degradation of DNA within Selectively Permeable Polymer Capsule Microreactors. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200804763] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Li M, Mann S. Emergent Hybrid Nanostructures Based on Non-Equilibrium Block Copolymer Self-Assembly. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200803231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Li M, Mann S. Emergent Hybrid Nanostructures Based on Non-Equilibrium Block Copolymer Self-Assembly. Angew Chem Int Ed Engl 2008; 47:9476-9. [DOI: 10.1002/anie.200803231] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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