1
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Purohit P, Bhatt A, Mittal RK, Abdellattif MH, Farghaly TA. Polymer Grafting and its chemical reactions. Front Bioeng Biotechnol 2023; 10:1044927. [PMID: 36714621 PMCID: PMC9874337 DOI: 10.3389/fbioe.2022.1044927] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 12/12/2022] [Indexed: 01/13/2023] Open
Abstract
Polymer grafting is a technique to improve the morphology, chemical, and physical properties of the polymer. This technique has the potential to improve the existing conduction and properties of polymers other than charge transport; as a result, it enhances the solubility, nano-dimensional morphology, biocompatibility, bio-communication, and other property of parent polymer. A polymer's physicochemical properties can be modified even further by creating a copolymer with another polymer or by grafting. Here in the various chemical approaches for polymer grafting, like free radical, click reaction, amide formation, and alkylation have been discussed with their importance, moreover the process and its importance are covered comprehensively with their scientific explanation. The present review also covers the effectiveness of the graft-to approaches and its application in various fields, which will give reader a glimpse about polymer grafting and its uses.
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Affiliation(s)
- Priyank Purohit
- School of Pharmacy, Graphic Era Hill University, Dehradun, India,*Correspondence: Priyank Purohit, ,
| | - Akanksha Bhatt
- School of Pharmacy, Graphic Era Hill University, Dehradun, India
| | | | | | - Thoraya A. Farghaly
- Department of Chemistry, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia
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2
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Zhang L, Isselstein M, Köhler J, Eleftheriadis N, Huisjes NM, Guirao-Ortiz M, Narducci A, Smit JH, Stoffels J, Harz H, Leonhardt H, Herrmann A, Cordes T. Linker Molecules Convert Commercial Fluorophores into Tailored Functional Probes during Biolabelling. Angew Chem Int Ed Engl 2022; 61:e202112959. [PMID: 35146855 PMCID: PMC9305292 DOI: 10.1002/anie.202112959] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Indexed: 12/27/2022]
Abstract
Many life‐science techniques and assays rely on selective labeling of biological target structures with commercial fluorophores that have specific yet invariant properties. Consequently, a fluorophore (or dye) is only useful for a limited range of applications, e.g., as a label for cellular compartments, super‐resolution imaging, DNA sequencing or for a specific biomedical assay. Modifications of fluorophores with the goal to alter their bioconjugation chemistry, photophysical or functional properties typically require complex synthesis schemes. We here introduce a general strategy that allows to customize these properties during biolabelling with the goal to introduce the fluorophore in the last step of biolabelling. For this, we present the design and synthesis of ‘linker’ compounds, that bridge biotarget, fluorophore and a functional moiety via well‐established labeling protocols. Linker molecules were synthesized via the Ugi four‐component reaction (Ugi‐4CR) which facilitates a modular design of linkers with diverse functional properties and bioconjugation‐ and fluorophore attachment moieties. To demonstrate the possibilities of different linkers experimentally, we characterized the ability of commercial fluorophores from the classes of cyanines, rhodamines, carbopyronines and silicon‐rhodamines to become functional labels on different biological targets in vitro and in vivo via thiol‐maleimide chemistry. With our strategy, we showed that the same commercial dye can become a photostable self‐healing dye or a sensor for bivalent ions subject to the linker used. Finally, we quantified the photophysical performance of different self‐healing linker–fluorophore conjugates and demonstrated their applications in super‐resolution imaging and single‐molecule spectroscopy.
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Affiliation(s)
- Lei Zhang
- Physical and Synthetic Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany.,Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing, 211816, China
| | - Michael Isselstein
- Physical and Synthetic Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany
| | - Jens Köhler
- (DWI) Leibniz Institute for Interactive Materials, Forckenbeckstr. 50, 52056, Aachen, Germany.,& Institute of Technical and Macromolecular Chemistry, (RWTH) Aachen University, Worringerweg 2, 52074, Aachen, Germany
| | - Nikolaos Eleftheriadis
- Molecular Microscopy Research Group, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Nadia M Huisjes
- Physical and Synthetic Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany.,Molecular Microscopy Research Group, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Miguel Guirao-Ortiz
- Human Biology & Bioimaging, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany
| | - Alessandra Narducci
- Physical and Synthetic Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany
| | - Jochem H Smit
- Molecular Microscopy Research Group, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Janko Stoffels
- (DWI) Leibniz Institute for Interactive Materials, Forckenbeckstr. 50, 52056, Aachen, Germany.,& Institute of Technical and Macromolecular Chemistry, (RWTH) Aachen University, Worringerweg 2, 52074, Aachen, Germany
| | - Hartmann Harz
- Human Biology & Bioimaging, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany
| | - Heinrich Leonhardt
- Human Biology & Bioimaging, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany
| | - Andreas Herrmann
- (DWI) Leibniz Institute for Interactive Materials, Forckenbeckstr. 50, 52056, Aachen, Germany.,& Institute of Technical and Macromolecular Chemistry, (RWTH) Aachen University, Worringerweg 2, 52074, Aachen, Germany
| | - Thorben Cordes
- Physical and Synthetic Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, Großhadernerstr. 2-4, 82152, Planegg-Martinsried, Germany.,Molecular Microscopy Research Group, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
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3
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Zhang L, Isselstein M, Köhler J, Eleftheriadis N, Huisjes N, Guirao M, Narducci A, Smit J, Stoffels J, Harz H, Leonhardt H, Herrmann A, Cordes T. Linker Molecules Convert Commercial Fluorophores into Tailored Functional Probes during Bio‐labeling. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202112959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Lei Zhang
- LMU München: Ludwig-Maximilians-Universitat Munchen Biocenter GERMANY
| | | | - Jens Köhler
- DWI-Leibniz-Institut für Interaktive Materialien: DWI-Leibniz-Institut fur Interaktive Materialien Chemie GERMANY
| | | | - Nadia Huisjes
- RUG: Rijksuniversiteit Groningen Zernike NETHERLANDS
| | - Miguel Guirao
- LMU München: Ludwig-Maximilians-Universitat Munchen Biocenter GERMANY
| | | | - Jochem Smit
- RUG: Rijksuniversiteit Groningen Zernike NETHERLANDS
| | - Janko Stoffels
- DWI-Leibniz-Institut für Interaktive Materialien: DWI-Leibniz-Institut fur Interaktive Materialien Chemistry GERMANY
| | - Hartmann Harz
- LMU München: Ludwig-Maximilians-Universitat Munchen Biocenter GERMANY
| | | | - Andreas Herrmann
- DWI-Leibniz-Institut für Interaktive Materialien: DWI-Leibniz-Institut fur Interaktive Materialien Chemistry GERMANY
| | - Thorben Cordes
- Ludwig-Maximilians-Universitat Munchen Faculty of Biology Großhadernerstr. 2-4 82152 Planegg-Martiensried GERMANY
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4
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More SA, Kardile RD, Kuo TC, Cheng MJ, Liu RS. Gold Catalysts Can Generate Nitrone Intermediates from a Nitrosoarene/Alkene Mixture, Enabling Two Distinct Catalytic Reactions: A Nitroso-Activated Cycloheptatriene/Benzylidene Rearrangement. Org Lett 2021; 23:5506-5511. [PMID: 34232666 DOI: 10.1021/acs.orglett.1c01857] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Gold-catalyzed reactions of cycloheptatrienes with nitrosoarenes yield nitrone derivatives efficiently. This reaction sequence enables us to develop gold-catalyzed aerobic oxidations of cycloheptatrienes to afford benzaldehyde derivatives using CuCl and nitrosoarenes as co-catalysts (10-30 mol %). Our density functional theory calculations support a novel nitroso-activated rearrangement, tropylium → benzylidene. With the same nitrosoarenes, we developed their gold-catalyzed [2 + 2 + 1]-annulations between nitrosobenzene and two enol ethers to yield 5-alkoxyisoxazolidines using 1,4-cyclohexadienes as hydrogen donors.
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Affiliation(s)
- Sayaji Arjun More
- Frontier Research Center of Matter Science and Technology, Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan, Republic of China
| | - Rahul Dadabhau Kardile
- Frontier Research Center of Matter Science and Technology, Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan, Republic of China
| | - Tung-Chun Kuo
- Department of Chemistry, National Cheng Kung University, Tainan 70101, Taiwan, Republic of China
| | - Mu-Jeng Cheng
- Department of Chemistry, National Cheng Kung University, Tainan 70101, Taiwan, Republic of China
| | - Rai-Shung Liu
- Frontier Research Center of Matter Science and Technology, Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan, Republic of China
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5
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Sandmeier T, Carreira EM. Enantioselective Synthesis of Cyclic Nitrones by Chemoselective Intramolecular Allylic Alkylation of Oximes. Angew Chem Int Ed Engl 2021; 60:9913-9918. [PMID: 33555650 DOI: 10.1002/anie.202100150] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 02/04/2021] [Indexed: 12/14/2022]
Abstract
The enantio- and chemoselective iridium-catalyzed N-allylation of oximes is described for the first time. Intramolecular kinetic resolution provides access to cyclic nitrones and enantioenriched aliphatic allylic alcohols. Salient features of this transformation are its ability to employ E/Z-isomeric mixtures of oxime starting materials convergently and high functional group tolerance. The implementation of N-allylation/1,3-dipolar cycloaddition reaction sequences furnishes tricyclic isoxazolidines in highly enantio- and diastereoselective fashion. The synthetic utility of the approach is demonstrated by the efficient, formal synthesis of the marine natural product (+)-halichlorine.
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Affiliation(s)
- Tobias Sandmeier
- Laboratorium für Organische Chemie, HCI H335, Eidgenössische Technische Hochschule Zürich, Vladimir-Prelog-Weg 3, 8093, Zürich, Switzerland
| | - Erick M Carreira
- Laboratorium für Organische Chemie, HCI H335, Eidgenössische Technische Hochschule Zürich, Vladimir-Prelog-Weg 3, 8093, Zürich, Switzerland
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6
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Sandmeier T, Carreira EM. Enantioselective Synthesis of Cyclic Nitrones by Chemoselective Intramolecular Allylic Alkylation of Oximes. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100150] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Tobias Sandmeier
- Laboratorium für Organische Chemie HCI H335 Eidgenössische Technische Hochschule Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Erick M. Carreira
- Laboratorium für Organische Chemie HCI H335 Eidgenössische Technische Hochschule Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
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7
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Baalmann M, Neises L, Bitsch S, Schneider H, Deweid L, Werther P, Ilkenhans N, Wolfring M, Ziegler MJ, Wilhelm J, Kolmar H, Wombacher R. A Bioorthogonal Click Chemistry Toolbox for Targeted Synthesis of Branched and Well-Defined Protein-Protein Conjugates. Angew Chem Int Ed Engl 2020; 59:12885-12893. [PMID: 32342666 PMCID: PMC7496671 DOI: 10.1002/anie.201915079] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 04/23/2020] [Indexed: 01/19/2023]
Abstract
Bioorthogonal chemistry holds great potential to generate difficult-to-access protein-protein conjugate architectures. Current applications are hampered by challenging protein expression systems, slow conjugation chemistry, use of undesirable catalysts, or often do not result in quantitative product formation. Here we present a highly efficient technology for protein functionalization with commonly used bioorthogonal motifs for Diels-Alder cycloaddition with inverse electron demand (DAinv ). With the aim of precisely generating branched protein chimeras, we systematically assessed the reactivity, stability and side product formation of various bioorthogonal chemistries directly at the protein level. We demonstrate the efficiency and versatility of our conjugation platform using different functional proteins and the therapeutic antibody trastuzumab. This technology enables fast and routine access to tailored and hitherto inaccessible protein chimeras useful for a variety of scientific disciplines. We expect our work to substantially enhance antibody applications such as immunodetection and protein toxin-based targeted cancer therapies.
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Affiliation(s)
- Mathis Baalmann
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Laura Neises
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Sebastian Bitsch
- Institute for Organic Chemistry and BiochemistryTechnische Universität DarmstadtAlarich-Weiss-Straße 464287DarmstadtGermany
| | - Hendrik Schneider
- Institute for Organic Chemistry and BiochemistryTechnische Universität DarmstadtAlarich-Weiss-Straße 464287DarmstadtGermany
| | - Lukas Deweid
- Institute for Organic Chemistry and BiochemistryTechnische Universität DarmstadtAlarich-Weiss-Straße 464287DarmstadtGermany
| | - Philipp Werther
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Nadja Ilkenhans
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Martin Wolfring
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Michael J. Ziegler
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Jonas Wilhelm
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Harald Kolmar
- Institute for Organic Chemistry and BiochemistryTechnische Universität DarmstadtAlarich-Weiss-Straße 464287DarmstadtGermany
| | - Richard Wombacher
- Institute of Pharmacy and Molecular BiotechnologyHeidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
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8
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Baalmann M, Neises L, Bitsch S, Schneider H, Deweid L, Werther P, Ilkenhans N, Wolfring M, Ziegler MJ, Wilhelm J, Kolmar H, Wombacher R. A Bioorthogonal Click Chemistry Toolbox for Targeted Synthesis of Branched and Well‐Defined Protein–Protein Conjugates. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201915079] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Mathis Baalmann
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Laura Neises
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Sebastian Bitsch
- Institute for Organic Chemistry and Biochemistry Technische Universität Darmstadt Alarich-Weiss-Straße 4 64287 Darmstadt Germany
| | - Hendrik Schneider
- Institute for Organic Chemistry and Biochemistry Technische Universität Darmstadt Alarich-Weiss-Straße 4 64287 Darmstadt Germany
| | - Lukas Deweid
- Institute for Organic Chemistry and Biochemistry Technische Universität Darmstadt Alarich-Weiss-Straße 4 64287 Darmstadt Germany
| | - Philipp Werther
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Nadja Ilkenhans
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Martin Wolfring
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Michael J. Ziegler
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Jonas Wilhelm
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
| | - Harald Kolmar
- Institute for Organic Chemistry and Biochemistry Technische Universität Darmstadt Alarich-Weiss-Straße 4 64287 Darmstadt Germany
| | - Richard Wombacher
- Institute of Pharmacy and Molecular Biotechnology Heidelberg University Im Neuenheimer Feld 364 69120 Heidelberg Germany
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9
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Adusumalli SR, Rawale DG, Thakur K, Purushottam L, Reddy NC, Kalra N, Shukla S, Rai V. Chemoselective and Site‐Selective Lysine‐Directed Lysine Modification Enables Single‐Site Labeling of Native Proteins. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202000062] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Srinivasa Rao Adusumalli
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Dattatraya Gautam Rawale
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Kalyani Thakur
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Landa Purushottam
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Neelesh C. Reddy
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Neetu Kalra
- Department of Biological Sciences Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Sanjeev Shukla
- Department of Biological Sciences Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Vishal Rai
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
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10
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Adusumalli SR, Rawale DG, Thakur K, Purushottam L, Reddy NC, Kalra N, Shukla S, Rai V. Chemoselective and Site-Selective Lysine-Directed Lysine Modification Enables Single-Site Labeling of Native Proteins. Angew Chem Int Ed Engl 2020; 59:10332-10336. [PMID: 32171045 DOI: 10.1002/anie.202000062] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 02/24/2020] [Indexed: 12/13/2022]
Abstract
The necessity for precision labeling of proteins emerged during the efforts to understand and regulate their structure and function. It demands selective attachment of tags such as affinity probes, fluorophores, and potent cytotoxins. Here, we report a method that enables single-site labeling of a high-frequency Lys residue in the native proteins. At first, the enabling reagent forms stabilized imines with multiple solvent-accessible Lys residues chemoselectively. These linchpins create the opportunity to regulate the position of a second Lys-selective electrophile connected by a spacer. Consequently, it enables the irreversible single-site labeling of a Lys residue independent of its place in the reactivity order. The user-friendly protocol involves a series of steps to deconvolute and address chemoselectivity, site-selectivity, and modularity. Also, it delivers ordered immobilization and analytically pure probe-tagged proteins. Besides, the methodology provides access to antibody-drug conjugate (ADC), which exhibits highly selective anti-proliferative activity towards HER-2 expressing SKBR-3 breast cancer cells.
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Affiliation(s)
- Srinivasa Rao Adusumalli
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Dattatraya Gautam Rawale
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Kalyani Thakur
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Landa Purushottam
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Neelesh C Reddy
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Neetu Kalra
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Sanjeev Shukla
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Vishal Rai
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
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11
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Margison KD, Bilodeau DA, Mahmoudi F, Pezacki JP. Cycloadditions of
Trans
‐Cyclooctenes and Nitrones as Tools for Bioorthogonal Labelling. Chembiochem 2020; 21:948-951. [DOI: 10.1002/cbic.201900627] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Indexed: 12/23/2022]
Affiliation(s)
- Kaitlyn D. Margison
- Department of Chemistry and Biomolecular SciencesUniversity of Ottawa 150 Louis-Pasteur Ottawa ON K1N 6N5 Canada
| | - Didier A. Bilodeau
- Department of Chemistry and Biomolecular SciencesUniversity of Ottawa 150 Louis-Pasteur Ottawa ON K1N 6N5 Canada
| | - Farnaz Mahmoudi
- Department of Chemistry and Biomolecular SciencesUniversity of Ottawa 150 Louis-Pasteur Ottawa ON K1N 6N5 Canada
| | - John Paul Pezacki
- Department of Chemistry and Biomolecular SciencesUniversity of Ottawa 150 Louis-Pasteur Ottawa ON K1N 6N5 Canada
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12
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Shum J, Zhang P, Lee LC, Lo KK. Bioorthogonal Phosphorogenic Rhenium(I) Polypyridine Sydnone Complexes for Specific Lysosome Labeling. Chempluschem 2020; 85:1374-1378. [DOI: 10.1002/cplu.202000029] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 03/04/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Justin Shum
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
| | - Pei‐Zhi Zhang
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
| | - Lawrence Cho‐Cheung Lee
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
| | - Kenneth Kam‐Wing Lo
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
- State Key Laboratory of Terahertz and Millimeter WavesCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
- Center of Functional PhotonicsCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
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13
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Pomplun S, Mohamed MYH, Oelschlaegel T, Wellner C, Bergmann F. Efficient Pictet-Spengler Bioconjugation with N
-Substituted Pyrrolyl Alanine Derivatives. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201814200] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Sebastian Pomplun
- Roche Diagnostics GmbH; Nonnenwald 2 82377 Penzberg Germany
- Current address: Massachusetts Institute of Technology; Department of Chemistry; 77 Massachusetts Ave Cambridge MA 02139 USA
| | | | | | | | - Frank Bergmann
- Roche Diagnostics GmbH; Nonnenwald 2 82377 Penzberg Germany
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14
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Pomplun S, Mohamed MYH, Oelschlaegel T, Wellner C, Bergmann F. Efficient Pictet-Spengler Bioconjugation with N-Substituted Pyrrolyl Alanine Derivatives. Angew Chem Int Ed Engl 2019; 58:3542-3547. [PMID: 30653800 DOI: 10.1002/anie.201814200] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 01/16/2019] [Indexed: 01/06/2023]
Abstract
We discovered N-pyrrolyl alanine derivatives as efficient reagents for the fast and selective Pictet-Spengler reaction with aldehyde-containing biomolecules. Other aldehyde-labeling methods described so far have several drawbacks, like hydrolytic instability, slow reaction kinetics or not readily available labeling reagents. Pictet-Spengler cyclizations of pyrrolyl 2-ethylamine substituted at the pyrrole nitrogen are significantly faster than with analogues substituted at the α- and β- position. Functionalized N-pyrrolyl alanine derivatives can be synthesized in only 2-3 steps from commercially available materials. The small size of the reagent, the high reaction rate, and the easy synthesis make pyrrolyl alanine Pictet-Spengler (PAPS) an attractive choice for bioconjugation reactions. PAPS was shown as an efficient strategy for the site-selective biotinylation of an antibody as well as for the condensation of nucleic-acid derivatives, demonstrating the versatility of this reagent.
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Affiliation(s)
- Sebastian Pomplun
- Roche Diagnostics GmbH, Nonnenwald 2, 82377, Penzberg, Germany.,Current address: Massachusetts Institute of Technology, Department of Chemistry, 77 Massachusetts Ave, Cambridge, MA, 02139, USA
| | | | | | | | - Frank Bergmann
- Roche Diagnostics GmbH, Nonnenwald 2, 82377, Penzberg, Germany
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15
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Petersen J, Christensen KE, Nielsen MT, Mortensen KT, Komnatnyy VV, Nielsen TE, Qvortrup K. Oxidative Modification of Tryptophan-Containing Peptides. ACS COMBINATORIAL SCIENCE 2018; 20:344-349. [PMID: 29719155 DOI: 10.1021/acscombsci.8b00014] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
We herein present a broadly useful method for the chemoselective modification of a wide range of tryptophan-containing peptides. Exposing a tryptophan-containing peptide to 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) resulted in a selective cyclodehydration between the peptide backbone and the indole side chain of tryptophan to form a fully conjugated indolyl-oxazole moiety. The modified peptides show a characteristic and significant emission maximum at 425 nm, thus making the method a useful strategy for fluorescence labeling.
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Affiliation(s)
- Jonas Petersen
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Katrine E. Christensen
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Mathias T. Nielsen
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Kim T. Mortensen
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Vitaly V. Komnatnyy
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Thomas E. Nielsen
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
- Department of Immunology and Microbiology, University of Copenhagen, DK-2200 Copenhagen, Denmark
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore 637551
| | - Katrine Qvortrup
- Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
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16
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Riomet M, Decuypere E, Porte K, Bernard S, Plougastel L, Kolodych S, Audisio D, Taran F. Design and Synthesis of Iminosydnones for Fast Click and Release Reactions with Cycloalkynes. Chemistry 2018; 24:8535-8541. [DOI: 10.1002/chem.201801163] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Revised: 04/04/2018] [Indexed: 12/22/2022]
Affiliation(s)
- Margaux Riomet
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Sergii Kolodych
- Syndivia SAS; 650 Boulevard Gonthier d'Andernach 67400 Illkirch France
| | - Davide Audisio
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
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17
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Raspertova IV, Doroschuk RO, Khomenko DM, Lampeka RD. Synthesis, spectroscopic, structural characterization of Cd(II) and Zn(II) complexes based on the N-methyl-C-(2-pyridyl)nitrone. J COORD CHEM 2017. [DOI: 10.1080/00958972.2017.1359576] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Ilona V. Raspertova
- Department of Chemistry, National Taras Shevchenko University, Kyiv, Ukraine
| | - Roman O. Doroschuk
- Department of Chemistry, National Taras Shevchenko University, Kyiv, Ukraine
| | - Dmytro M. Khomenko
- Department of Chemistry, National Taras Shevchenko University, Kyiv, Ukraine
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18
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Liu H, Audisio D, Plougastel L, Decuypere E, Buisson DA, Koniev O, Kolodych S, Wagner A, Elhabiri M, Krzyczmonik A, Forsback S, Solin O, Gouverneur V, Taran F. Ultrafast Click Chemistry with Fluorosydnones. Angew Chem Int Ed Engl 2016; 55:12073-7. [PMID: 27560312 DOI: 10.1002/anie.201606495] [Citation(s) in RCA: 78] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Indexed: 12/31/2022]
Abstract
We report the synthesis and reactivity of 4-fluorosydnones, a unique class of mesoionic dipoles displaying exquisite reactivity towards both copper-catalyzed and strain-promoted cycloaddition reactions with alkynes. Synthetic access to these new mesoionic compounds was granted by electrophilic fluorination of σ-sydnone Pd(II) precursors in the presence of Selectfluor. Their reactions with terminal and cyclic alkynes were found to proceed very rapidly and selectively, affording 5-fluoro-1,4-pyrazoles with bimolecular rate constants up to 10(4) m(-1) s(-1) , surpassing those documented in the literature with cycloalkynes. Kinetic studies were carried out to unravel the mechanism of the reaction, and the value of 4-fluorosydnones was further highlighted by successful radiolabeling with [(18) F]Selectfluor.
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Affiliation(s)
- Hui Liu
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - David-Alexandre Buisson
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Oleksandr Koniev
- Syndivia SAS, 650 Boulevard Gonthier O'Andernach, 67400, Illkirch, France
| | - Sergii Kolodych
- Syndivia SAS, 650 Boulevard Gonthier O'Andernach, 67400, Illkirch, France
| | - Alain Wagner
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS-UdS, 67401, Illkirch, France
| | - Mourad Elhabiri
- Laboratory of Bioorganic and Medicinal Chemistry, UMR 7509 CNRS, ECPM, 25, rue Becquerel, 67200, Strasbourg, France
| | - Anna Krzyczmonik
- Turku PET Centre and Department of Chemistry, University of Turku, 20520, Turku, Finland
| | - Sarita Forsback
- Turku PET Centre and Department of Chemistry, University of Turku, 20520, Turku, Finland
| | - Olof Solin
- Turku PET Centre and Department of Chemistry, University of Turku, 20520, Turku, Finland
| | - Véronique Gouverneur
- Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA, Université Paris-Saclay, 91191, Gif-sur-Yvette, France.
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19
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Liu H, Audisio D, Plougastel L, Decuypere E, Buisson DA, Koniev O, Kolodych S, Wagner A, Elhabiri M, Krzyczmonik A, Forsback S, Solin O, Gouverneur V, Taran F. Ultrafast Click Chemistry with Fluorosydnones. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201606495] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Hui Liu
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - David-Alexandre Buisson
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Oleksandr Koniev
- Syndivia SAS; 650 Boulevard Gonthier O'Andernach 67400 Illkirch France
| | - Sergii Kolodych
- Syndivia SAS; 650 Boulevard Gonthier O'Andernach 67400 Illkirch France
| | - Alain Wagner
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS-UdS; 67401 Illkirch France
| | - Mourad Elhabiri
- Laboratory of Bioorganic and Medicinal Chemistry, UMR 7509 CNRS; ECPM; 25, rue Becquerel 67200 Strasbourg France
| | - Anna Krzyczmonik
- Turku PET Centre and Department of Chemistry; University of Turku; 20520 Turku Finland
| | - Sarita Forsback
- Turku PET Centre and Department of Chemistry; University of Turku; 20520 Turku Finland
| | - Olof Solin
- Turku PET Centre and Department of Chemistry; University of Turku; 20520 Turku Finland
| | - Véronique Gouverneur
- Chemistry Research Laboratory; University of Oxford; 12 Mansfield Road Oxford OX1 3TA UK
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage (SCBM), IBITECS, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
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20
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Tang TSM, Liu HW, Lo KKW. Structural Manipulation of Ruthenium(II) Polypyridine Nitrone Complexes to Generate Phosphorogenic Bioorthogonal Reagents for Selective Cellular Labeling. Chemistry 2016; 22:9649-59. [DOI: 10.1002/chem.201601332] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Indexed: 12/12/2022]
Affiliation(s)
- Tommy Siu-Ming Tang
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Hua-Wei Liu
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Kenneth Kam-Wing Lo
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
- State Key Laboratory of Millimeter Waves; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
- Center for Functional Photonics; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
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21
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Pałasz A. Recent Advances in Inverse-Electron-Demand Hetero-Diels-Alder Reactions of 1-Oxa-1,3-Butadienes. Top Curr Chem (Cham) 2016; 374:24. [PMID: 27573264 PMCID: PMC5480413 DOI: 10.1007/s41061-016-0026-2] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Accepted: 04/11/2016] [Indexed: 11/30/2022]
Abstract
This review is an endeavor to highlight the progress in the inverse-electron-demand hetero-Diels-Alder reactions of 1-oxa-1,3-butadienes in recent years. The huge number of examples of 1-oxadienes cycloadditions found in the literature clearly demonstrates the incessant importance of this transformation in pyran ring synthesis. This type of reaction is today one of the most important methods for the synthesis of dihydropyrans which are the key building blocks in structuring of carbohydrate and other natural products. Two different modes, inter- and intramolecular, of inverse-electron-demand hetero-Diels-Alder reactions of 1-oxadienes are discussed. The domino Knoevenagel hetero-Diels-Alder reactions are also described. In recent years the use of chiral Lewis acids, chiral organocatalysts, new optically active heterodienes or dienophiles have provided enormous progress in asymmetric synthesis. Solvent-free and aqueous hetero-Diels-Alder reactions of 1-oxabutadienes were also investigated. The reactivity of reactants, selectivity of cycloadditions, and chemical stability in aqueous solutions and under physiological conditions were taken into account to show the potential application of the described reactions in bioorthogonal chemistry. New bioorthogonal ligation by click inverse-electron-demand hetero-Diels-Alder cycloaddition of in situ-generated 1-oxa-1,3-butadienes and vinyl ethers was developed. It seems that some of the hetero-Diels-Alder reactions described in this review can be applied in bioorthogonal chemistry because they are selective, non-toxic, and can function in biological conditions taking into account pH, an aqueous environment, and temperature.
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Affiliation(s)
- Aleksandra Pałasz
- Department of Organic Chemistry, Jagiellonian University, Ingardena 3 St, 30-060, Kraków, Poland.
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22
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Hansen MB, Hubálek F, Skrydstrup T, Hoeg-Jensen T. Chemo- and Regioselective Ethynylation of Tryptophan-Containing Peptides and Proteins. Chemistry 2015; 22:1572-6. [DOI: 10.1002/chem.201504462] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2015] [Indexed: 01/07/2023]
Affiliation(s)
| | | | - Troels Skrydstrup
- Carbon Dioxide Activation Center (CADIAC); Interdisplinary Nanoscience Center and Department of Chemistry; Aarhus University; Gustav Wieds Vej 14 8000 Aarhus C Denmark
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23
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Lee LCC, Lau JCW, Liu HW, Lo KKW. Conferring Phosphorogenic Properties on Iridium(III)-Based Bioorthogonal Probes through Modification with a Nitrone Unit. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201509396] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Lawrence Cho-Cheung Lee
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Jonathan Chun-Wai Lau
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Hua-Wei Liu
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Kenneth Kam-Wing Lo
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
- State Key Laboratory of Millimeter Waves; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong (P.R. China
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24
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Lee LCC, Lau JCW, Liu HW, Lo KKW. Conferring Phosphorogenic Properties on Iridium(III)-Based Bioorthogonal Probes through Modification with a Nitrone Unit. Angew Chem Int Ed Engl 2015; 55:1046-9. [DOI: 10.1002/anie.201509396] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2015] [Indexed: 12/25/2022]
Affiliation(s)
- Lawrence Cho-Cheung Lee
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Jonathan Chun-Wai Lau
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Hua-Wei Liu
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
| | - Kenneth Kam-Wing Lo
- Department of Biology and Chemistry; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong P.R. China
- State Key Laboratory of Millimeter Waves; City University of Hong Kong; Tat Chee Avenue, Kowloon Hong Kong (P.R. China
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25
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Tong R, Tang L, Ma L, Tu C, Baumgartner R, Cheng J. Smart chemistry in polymeric nanomedicine. Chem Soc Rev 2014; 43:6982-7012. [DOI: 10.1039/c4cs00133h] [Citation(s) in RCA: 155] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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26
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Leunissen EHP, Meuleners MHL, Verkade JMM, Dommerholt J, Hoenderop JGJ, van Delft FL. Copper-Free Click Reactions with Polar Bicyclononyne Derivatives for Modulation of Cellular Imaging. Chembiochem 2014; 15:1446-51. [DOI: 10.1002/cbic.201402030] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Indexed: 01/19/2023]
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27
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Li X, Fang T, Boons G. Preparation of Well‐Defined Antibody–Drug Conjugates through Glycan Remodeling and Strain‐Promoted Azide–Alkyne Cycloadditions. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201402606] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Xiuru Li
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Tao Fang
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
- Department of Chemistry, University of Georgia (USA)
| | - Geert‐Jan Boons
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
- Department of Chemistry, University of Georgia (USA)
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28
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Li X, Fang T, Boons GJ. Preparation of well-defined antibody-drug conjugates through glycan remodeling and strain-promoted azide-alkyne cycloadditions. Angew Chem Int Ed Engl 2014; 53:7179-82. [PMID: 24862406 DOI: 10.1002/anie.201402606] [Citation(s) in RCA: 116] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Indexed: 11/08/2022]
Abstract
Antibody-drug conjugates hold considerable promise as anticancer agents, however, producing them remains a challenge and there is a need for mild, broadly applicable, site-specific conjugation methods that yield homogenous products. It was envisaged that enzymatic remodeling of the oligosaccharides of an antibody would enable the introduction of reactive groups that can be exploited for the site-specific attachment of cytotoxic drugs. This is based on the observation that glycosyltransferases often tolerate chemical modifications in their sugar nucleotide substrates, thus allowing the installation of reactive functionalities. An azide was incorporated because this functional group is virtually absent in biological systems and can be reacted by strain-promoted alkyne-azide cycloaddition. This method, which does not require genetic engineering, was used to produce an anti-CD22 antibody modified with doxorubicin to selectively target and kill lymphoma cells.
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Affiliation(s)
- Xiuru Li
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
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29
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Garcia-Hartjes J, Dommerholt J, Wennekes T, van Delft FL, Zuilhof H. Electronic Effects versus Distortion Energies During Strain-Promoted Alkyne-Azide Cycloadditions: A Theoretical Tool to Predict Reaction Kinetics. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201627] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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30
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1-Thiacyclooct-4-yne (=5,6-Didehydro-3,4,7,8-tetrahydro-2H-thiocin), and Its Sulfoxide and Its Sulfone. Helv Chim Acta 2013. [DOI: 10.1002/hlca.201200260] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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31
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Munch HK, Rasmussen JE, Popa G, Christensen JB, Jensen KJ. Site-selective three-component reaction for dual-functionalization of peptides. Chem Commun (Camb) 2013; 49:1936-8. [DOI: 10.1039/c3cc38673b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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McLeod D, McNulty J. Mild Chemical and Biological Synthesis of Donor-Acceptor Flanked Reporter Stilbenes: Demonstration of a Physiological Wittig Olefination Reaction. European J Org Chem 2012. [DOI: 10.1002/ejoc.201201042] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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33
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van Berkel SS, Brauch S, Gabriel L, Henze M, Stark S, Vasilev D, Wessjohann LA, Abbas M, Westermann B. Traceless tosylhydrazone-based triazole formation: a metal-free alternative to strain-promoted azide-alkyne cycloaddition. Angew Chem Int Ed Engl 2012; 51:5343-6. [PMID: 22514135 DOI: 10.1002/anie.201108850] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sander S van Berkel
- Department of Bioorganic Chemistry, Leibniz-Institute of Plant Biochemistry, Halle, Germany
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34
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van Berkel SS, Brauch S, Gabriel L, Henze M, Stark S, Vasilev D, Wessjohann LA, Abbas M, Westermann B. “Spurlose” Tosylhydrazon-basierte Triazolsynthese: eine metallfreie Alternative zur ringspannungskatalysierten Azid-Alkin- Cycloaddition. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201108850] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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35
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Heaney F. Nitrile Oxide/Alkyne Cycloadditions - A Credible Platform for Synthesis of Bioinspired Molecules by Metal-Free Molecular Clicking. European J Org Chem 2012. [DOI: 10.1002/ejoc.201101823] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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36
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de Almeida G, Sletten EM, Nakamura H, Palaniappan KK, Bertozzi CR. Thiacycloalkynes for Copper-Free Click Chemistry. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201106325] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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37
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de Almeida G, Sletten EM, Nakamura H, Palaniappan KK, Bertozzi CR. Thiacycloalkynes for copper-free click chemistry. Angew Chem Int Ed Engl 2012; 51:2443-7. [PMID: 22282228 PMCID: PMC3384729 DOI: 10.1002/anie.201106325] [Citation(s) in RCA: 120] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2011] [Revised: 11/30/2011] [Indexed: 12/21/2022]
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38
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Colombo M, Sommaruga S, Mazzucchelli S, Polito L, Verderio P, Galeffi P, Corsi F, Tortora P, Prosperi D. Site-Specific Conjugation of ScFvs Antibodies to Nanoparticles by Bioorthogonal Strain-Promoted Alkyne-Nitrone Cycloaddition. Angew Chem Int Ed Engl 2011; 51:496-9. [DOI: 10.1002/anie.201106775] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2011] [Revised: 10/18/2011] [Indexed: 12/18/2022]
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39
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Site-Specific Conjugation of ScFvs Antibodies to Nanoparticles by Bioorthogonal Strain-Promoted Alkyne-Nitrone Cycloaddition. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201106775] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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40
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Mbua NE, Guo J, Wolfert MA, Steet R, Boons GJ. Strain-promoted alkyne-azide cycloadditions (SPAAC) reveal new features of glycoconjugate biosynthesis. Chembiochem 2011; 12:1912-21. [PMID: 21661087 PMCID: PMC3151320 DOI: 10.1002/cbic.201100117] [Citation(s) in RCA: 116] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2011] [Indexed: 11/07/2022]
Abstract
We have shown that 4-dibenzocyclooctynol (DIBO), which can easily be obtained by a streamlined synthesis approach, reacts exceptionally fast in the absence of a Cu(I) catalyst with azido-containing compounds to give stable triazoles. Chemical modifications of DIBO, such as oxidation of the alcohol to a ketone, increased the rate of strain promoted azide-alkyne cycloadditions (SPAAC). Installment of a ketone or oxime in the cyclooctyne ring resulted in fluorescent active compounds whereas this property was absent in the corresponding cycloaddition adducts; this provides the first example of a metal-free alkyne-azide fluoro-switch click reaction. The alcohol or ketone functions of the cyclooctynes offer a chemical handle to install a variety of different tags, and thereby facilitate biological studies. It was found that DIBO modified with biotin combined with metabolic labeling with an azido-containing monosaccharide can determine relative quantities of sialic acid of living cells that have defects in glycosylation (Lec CHO cells). A combined use of metabolic labeling/SPAAC and lectin staining of cells that have defects in the conserved oligomeric Golgi (COG) complex revealed that such defects have a greater impact on O-glycan sialylation than galactosylation, whereas sialylation and galactosylation of N-glycans was similarly impacted. These results highlight the fact that the fidelity of Golgi trafficking is a critical parameter for the types of oligosaccharides being biosynthesized by a cell. Furthermore, by modulating the quantity of biosynthesized sugar nucleotide, cells might have a means to selectively alter specific glycan structures of glycoproteins.
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Affiliation(s)
- Ngalle Eric Mbua
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Jun Guo
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Margreet A. Wolfert
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Richard Steet
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Geert-Jan Boons
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
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van Hest JCM, van Delft FL. Protein Modification by Strain-Promoted Alkyne-Azide Cycloaddition. Chembiochem 2011; 12:1309-12. [DOI: 10.1002/cbic.201100206] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2011] [Indexed: 12/23/2022]
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Dommerholt J, Schmidt S, Temming R, Hendriks LJA, Rutjes FPJT, van Hest JCM, Lefeber DJ, Friedl P, van Delft FL. Readily accessible bicyclononynes for bioorthogonal labeling and three-dimensional imaging of living cells. Angew Chem Int Ed Engl 2010; 49:9422-5. [PMID: 20857472 PMCID: PMC3021724 DOI: 10.1002/anie.201003761] [Citation(s) in RCA: 558] [Impact Index Per Article: 37.2] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2010] [Indexed: 12/27/2022]
Affiliation(s)
- Jan Dommerholt
- Radboud University Nijmegen, Institute for Molecules and Materials, Heijendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
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43
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Ledin PA, Friscourt F, Guo J, Boons GJ. Convergent assembly and surface modification of multifunctional dendrimers by three consecutive click reactions. Chemistry 2010; 17:839-46. [PMID: 21226098 DOI: 10.1002/chem.201002052] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2010] [Indexed: 11/06/2022]
Abstract
Multifunctional dendrimers bearing two or more surface functionalities have the promise to provide smart drug delivery devices that can for example combine tissue targeting and imaging or be directed more precisely to a specific tissue or cell type. We have developed a concise synthetic methodology for efficient dendrimer assembly and heterobifunctionalization based on three sequential azide-alkyne cycloadditions. The methodology is compatible with biologically important compounds rich in chemical functionalities such as peptides, carbohydrates, and fluorescent tags. In the approach, a strain-promoted azide-alkyne cycloaddition (SPAAC) between polyester dendrons modified at the focal point with an azido and 4-dibenzocyclooctynol (DIBO) moiety provided dendrimers bearing terminal and TMS-protected (TMS=trimethylsilyl) alkynes at the periphery. The terminal alkynes were outfitted with azido-modified polyethylene glycol (PEG) chains or galactosyl residues by using Cu(I) -catalyzed azide-alkyne cycloadditions (CuAAC). Next, a one-pot TMS deprotection and second click reaction of the resulting terminal alkyne with azido-containing compounds gave multifunctional dendrimers bearing complex biologically active moieties at the periphery.
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Affiliation(s)
- Petr A Ledin
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens GA 30602, USA
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Debets MF, van der Doelen CWJ, Rutjes FPJT, van Delft FL. Azide: a unique dipole for metal-free bioorthogonal ligations. Chembiochem 2010; 11:1168-84. [PMID: 20455238 DOI: 10.1002/cbic.201000064] [Citation(s) in RCA: 196] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Covalently bound azide on a (small) organic molecule or a (large) biomolecular structure has proven an important handle for bioconjugation. Azides are readily introduced, small, and stable, yet undergo smooth ligation with a range of reactive probes under mild conditions. In particular, the potential of azides to undergo metal-free reactions with strained unsaturated systems has inspired the development of an increasing number of reactive probes, which are comprehensively summarized here. For each individual probe, the synthetic preparation is described, together with reaction kinetics and the full range of applications, from materials science to glycoprofiling. Finally, a qualitative and quantitative comparison of azido-reactive probes is provided.
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Affiliation(s)
- Marjoke F Debets
- Radboud University Nijmegen, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
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45
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Dommerholt J, Schmidt S, Temming R, Hendriks LJA, Rutjes FPJT, van Hest JCM, Lefeber DJ, Friedl P, van Delft FL. Readily Accessible Bicyclononynes for Bioorthogonal Labeling and Three-Dimensional Imaging of Living Cells. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201003761] [Citation(s) in RCA: 124] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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