1
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Ding H, Su B, Jiang D. Recent Advances in Single Cell Analysis by Electrochemiluminescence. Chemistry 2022; 12:e202200113. [PMID: 35880657 PMCID: PMC10152889 DOI: 10.1002/open.202200113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 06/28/2022] [Indexed: 11/07/2022]
Abstract
Understanding biological mechanisms operating in cells is one of the major goals of biology. Since heterogeneity is the fundamental property of cellular systems, single cell measurements can provide more accurate information about the composition, dynamics, and regulatory circuits of cells than population-averaged assays. Electrochemiluminescence (ECL), the light emission triggered by electrochemical reactions, is an emerging approach for single cell analysis. Numerous analytes, ranging from small biomolecules such as glucose and cholesterol, proteins and nucleic acids to subcellular structures, have been determined in single cells by ECL, which yields new insights into cellular functions. This review aims to provide an overview of research progress on ECL principles and systems for single cell analysis in recent years. The ECL reaction mechanisms are briefly introduced, and then the advances and representative works in ECL single cell analysis are summarized. Finally, outlooks and challenges in this field are addressed.
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Affiliation(s)
- Hao Ding
- State Key Laboratory of Analytical Chemistry for Life Science, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, China
| | - Bin Su
- Institute of Analytical Chemistry, Department of Chemistry, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Dechen Jiang
- State Key Laboratory of Analytical Chemistry for Life Science, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu, 210023, China
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2
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Shi C, Jia H, Chen S, Huang J, Peng Y, Guo W. Hydrogen/Deuterium Exchange Aiding Metabolite Identification in Single-Cell Nanospray High-Resolution Mass Spectrometry Analysis. Anal Chem 2021; 94:650-657. [PMID: 34931818 DOI: 10.1021/acs.analchem.1c02057] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The identification of metabolites in single-cell or small-volume tissue samples using single-cell mass spectrometry (MS) is challenging. In this study, hydrogen/deuterium (H/D) exchange was combined with microsampling nanospray high-resolution mass spectrometry (HRMS) to improve the efficiency and confidence level of metabolite identification in a single cell using commercial software. A nanospray ion source showed an improved reaction depth of 8% for H/D exchange compared with an electrospray ion source. In total, 273 metabolites were identified in Allium cepa L. single cells by searching commercial databases. Generally, more than one candidate is given for a precursor ion by MS or tandem MS (MS2) databases such as ChemSpider, MetDNA, MassBank, and mzCloud. With the help of the H/D exchange technique, the number of candidates decreased and reduction of the search space by a factor of 8 was achieved. In addition, two enzymolysis products of isoalliin, the transient intermediate and its isomer, were tracked at the single-cell level using the proposed method.
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Affiliation(s)
- Changzhi Shi
- State Key Laboratory of Biogeology and Environmental Geology, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China
| | - Hetian Jia
- State Key Laboratory of Biogeology and Environmental Geology, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China
| | - Sisi Chen
- State Key Laboratory of Biogeology and Environmental Geology, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China
| | - Juan Huang
- Wuhan Metware Biotechnology Co., Ltd., Wuhan 430074, China
| | - Yue'e Peng
- State Key Laboratory of Biogeology and Environmental Geology, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China
| | - Wei Guo
- State Key Laboratory of Biogeology and Environmental Geology, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, China
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3
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Cahn JKB, Piel J. Anwendungen von Einzelzellmethoden in der mikrobiellen Naturstoffforschung. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.201900532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jackson K. B. Cahn
- Institut für Mikrobiologie Eidgenössische Technische Hochschule Zürich (ETH) 8093 Zürich Schweiz
| | - Jörn Piel
- Institut für Mikrobiologie Eidgenössische Technische Hochschule Zürich (ETH) 8093 Zürich Schweiz
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4
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Zhou J, Zhang S, Liu Y. Electrochemiluminescence Single‐cell Analysis on Nanostructured Interface. ELECTROANAL 2021. [DOI: 10.1002/elan.202100341] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Juanhua Zhou
- Department of Chemistry Beijing Key Laboratory for Analytical Methods and Instrumentation Kay Lab of Bioorganic Phosphorus Chemistry and Chemical Biology of Ministry of Education Tsinghua University Beijing 100084 China
| | - Shiyu Zhang
- Department of Chemistry Beijing Key Laboratory for Analytical Methods and Instrumentation Kay Lab of Bioorganic Phosphorus Chemistry and Chemical Biology of Ministry of Education Tsinghua University Beijing 100084 China
| | - Yang Liu
- Department of Chemistry Beijing Key Laboratory for Analytical Methods and Instrumentation Kay Lab of Bioorganic Phosphorus Chemistry and Chemical Biology of Ministry of Education Tsinghua University Beijing 100084 China
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5
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Lombard-Banek C, Li J, Portero EP, Onjiko RM, Singer CD, Plotnick DO, Al Shabeeb RQ, Nemes P. In Vivo Subcellular Mass Spectrometry Enables Proteo-Metabolomic Single-Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (X. laevis)*. Angew Chem Int Ed Engl 2021; 60:12852-12858. [PMID: 33682213 PMCID: PMC8176382 DOI: 10.1002/anie.202100923] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Indexed: 01/05/2023]
Abstract
We report the development of in vivo subcellular high-resolution mass spectrometry (HRMS) for proteo-metabolomic molecular systems biology in complex tissues. With light microscopy, we identified the left-dorsal and left-ventral animal cells in cleavage-stage non-sentient Xenopus laevis embryos. Using precision-translated fabricated microcapillaries, the subcellular content of each cell was double-probed, each time swiftly (<5 s/event) aspirating <5 % of cell volume (≈10 nL). The proteins and metabolites were analyzed by home-built ultrasensitive capillary electrophoresis electrospray ionization employing orbitrap or time-of-flight HRMS. Label-free detection of ≈150 metabolites (57 identified) and 738 proteins found proteo-metabolomic networks with differential quantitative activities between the cell types. With spatially and temporally scalable sampling, the technology preserved the integrity of the analyzed cells, the neighboring cells, and the embryo. 95 % of the analyzed embryos developed into sentient tadpoles that were indistinguishable from their wild-type siblings based on anatomy and visual function in a background color preference assay.
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Affiliation(s)
- Camille Lombard-Banek
- Department of Chemistry & Biochemistry, University of Maryland, 0107 Chemistry Building, 8051 Regents Drive, College Park, MD 20742 (USA)
| | - Jie Li
- Department of Chemistry & Biochemistry, University of Maryland, 0107 Chemistry Building, 8051 Regents Drive, College Park, MD 20742 (USA)
| | - Erika P. Portero
- Department of Chemistry & Biochemistry, University of Maryland, 0107 Chemistry Building, 8051 Regents Drive, College Park, MD 20742 (USA)
| | - Rosemary M. Onjiko
- Department of Chemistry, The George Washington University, 800 22nd St NW, Washington, DC 20052 (USA)
| | - Chase D. Singer
- Department of Chemistry & Biochemistry, University of Maryland, 0107 Chemistry Building, 8051 Regents Drive, College Park, MD 20742 (USA)
| | - David O. Plotnick
- Department of Chemistry, The George Washington University, 800 22nd St NW, Washington, DC 20052 (USA)
| | - Reem Q. Al Shabeeb
- Department of Chemistry, The George Washington University, 800 22nd St NW, Washington, DC 20052 (USA)
| | - Peter Nemes
- Department of Chemistry & Biochemistry, University of Maryland, 0107 Chemistry Building, 8051 Regents Drive, College Park, MD 20742 (USA)
- Department of Chemistry, The George Washington University, 800 22nd St NW, Washington, DC 20052 (USA)
- Department of Anatomy & Cell Biology, School of Medicine and Health Sciences, The George Washington University, 2300 I Street NW, Washington, DC 20037 (USA)
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6
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Lombard‐Banek C, Li J, Portero EP, Onjiko RM, Singer CD, Plotnick DO, Al Shabeeb RQ, Nemes P. In Vivo Subcellular Mass Spectrometry Enables Proteo‐Metabolomic Single‐Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (
X. laevis
)**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100923] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Camille Lombard‐Banek
- Department of Chemistry & Biochemistry University of Maryland 0107 Chemistry Building 8051 Regents Drive College Park MD 20742 USA
| | - Jie Li
- Department of Chemistry & Biochemistry University of Maryland 0107 Chemistry Building 8051 Regents Drive College Park MD 20742 USA
| | - Erika P. Portero
- Department of Chemistry & Biochemistry University of Maryland 0107 Chemistry Building 8051 Regents Drive College Park MD 20742 USA
| | - Rosemary M. Onjiko
- Department of Chemistry The George Washington University 800 22nd St NW Washington DC 20052 USA
| | - Chase D. Singer
- Department of Chemistry & Biochemistry University of Maryland 0107 Chemistry Building 8051 Regents Drive College Park MD 20742 USA
| | - David O. Plotnick
- Department of Chemistry The George Washington University 800 22nd St NW Washington DC 20052 USA
| | - Reem Q. Al Shabeeb
- Department of Chemistry The George Washington University 800 22nd St NW Washington DC 20052 USA
| | - Peter Nemes
- Department of Chemistry & Biochemistry University of Maryland 0107 Chemistry Building 8051 Regents Drive College Park MD 20742 USA
- Department of Chemistry The George Washington University 800 22nd St NW Washington DC 20052 USA
- Department of Anatomy & Cell Biology School of Medicine and Health Sciences The George Washington University 2300 I Street NW Washington DC 20037 USA
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7
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Cahn JKB, Piel J. Opening up the Single-Cell Toolbox for Microbial Natural Products Research. Angew Chem Int Ed Engl 2021; 60:18412-18428. [PMID: 30748086 DOI: 10.1002/anie.201900532] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Indexed: 02/06/2023]
Abstract
The diverse microbes that produce natural products represent an important source of novel therapeutics, drug leads, and scientific tools. However, the vast majority have not been grown in axenic culture and are members of complex communities. While meta-'omic methods such as metagenomics, -transcriptomics, and -proteomics reveal collective molecular features of this "microbial dark matter", the study of individual microbiome members can be challenging. To address these limits, a number of techniques with single-bacterial resolution have been developed in the last decade and a half. While several of these are embraced by microbial ecologists, there has been less use by researchers interested in mining microbes for natural products. In this review, we discuss the available and emerging techniques for targeted single-cell analysis with a particular focus on applications to the discovery and study of natural products.
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Affiliation(s)
- Jackson K B Cahn
- Instit. of Microbiol., Eidgenössische Technische Hochschule Zürich (ETH), 8093, Zurich, Switzerland
| | - Jörn Piel
- Instit. of Microbiol., Eidgenössische Technische Hochschule Zürich (ETH), 8093, Zurich, Switzerland
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8
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Sun S, Liu W, Yang J, Wang H, Qian K. Nanoparticle‐Assisted Cation Adduction and Fragmentation of Small Metabolites. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100734] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Shiyu Sun
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Wanshan Liu
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Jing Yang
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Hang Wang
- Instrumental Analysis Center Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Kun Qian
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
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9
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Sun S, Liu W, Yang J, Wang H, Qian K. Nanoparticle‐Assisted Cation Adduction and Fragmentation of Small Metabolites. Angew Chem Int Ed Engl 2021; 60:11310-11317. [DOI: 10.1002/anie.202100734] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Indexed: 12/18/2022]
Affiliation(s)
- Shiyu Sun
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Wanshan Liu
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Jing Yang
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Hang Wang
- Instrumental Analysis Center Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Kun Qian
- State Key Laboratory for Oncogenes and Related Genes School of Biomedical Engineering and Institute of Medical Robotics Shanghai Jiao Tong University Shanghai 200030 P. R. China
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10
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Lee D, Rubakhin SS, Kusmartseva I, Wasserfall C, Atkinson MA, Sweedler JV. Removing Formaldehyde‐Induced Peptidyl Crosslinks Enables Mass Spectrometry Imaging of Peptide Hormone Distributions from Formalin‐Fixed Paraffin‐Embedded Tissues. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Dong‐Kyu Lee
- Department of Chemistry and Beckman institute for Advanced Science and Technology University of Illinois at Urbana-Champaign 405 S. Mathews Ave. Urbana IL 61801 USA
| | - Stanislav S. Rubakhin
- Department of Chemistry and Beckman institute for Advanced Science and Technology University of Illinois at Urbana-Champaign 405 S. Mathews Ave. Urbana IL 61801 USA
| | - Irina Kusmartseva
- Department of Pathology, Immunology and Laboratory Medicine College of Medicine University of Florida Gainesville FL 32610 USA
| | - Clive Wasserfall
- Department of Pathology, Immunology and Laboratory Medicine College of Medicine University of Florida Gainesville FL 32610 USA
| | - Mark A. Atkinson
- Department of Pathology, Immunology and Laboratory Medicine College of Medicine University of Florida Gainesville FL 32610 USA
| | - Jonathan V. Sweedler
- Department of Chemistry and Beckman institute for Advanced Science and Technology University of Illinois at Urbana-Champaign 405 S. Mathews Ave. Urbana IL 61801 USA
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11
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Xu S, Liu M, Bai Y, Liu H. Multi-Dimensional Organic Mass Cytometry: Simultaneous Analysis of Proteins and Metabolites on Single Cells. Angew Chem Int Ed Engl 2020; 60:1806-1812. [PMID: 33085796 DOI: 10.1002/anie.202009682] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Indexed: 12/11/2022]
Abstract
Mass cytometry is attracting significant attention for enabling spatiotemporal high-throughput single-cell analysis. As the first demonstration of the simultaneous detection of single-cell proteins and untargeted metabolites, a multi-dimensional organic mass-cytometry system was established by a simple microfluidic chip connected to a nanoelectrospray mass spectrometer, providing useful heterogeneous information about the cells. A series of mass probes with online-dissociated mass tags were developed, ensuring the semi-quantification of cell-surface proteins and the compatibility of endogenous metabolite detection at the single-cell level. Six cell surface antigens and ≈100 metabolites from three ovarian-cancer cell types and two breast-cancer cell types were successfully monitored and contributed to highly sensitive and specific cell typing. Doxorubicin-resistant cancer-cell analysis confirmed the applications in distinguishing rare cell phenotypes. The proposed system is simple, extensible, and promising for cell typing, drug-resistance analysis of tumor cells, and clinical diagnosis and therapy at the single-cell level.
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Affiliation(s)
- Shuting Xu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, P. R. China
| | - Mingxia Liu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, P. R. China
| | - Yu Bai
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, P. R. China
| | - Huwei Liu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, P. R. China
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12
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Xu S, Liu M, Bai Y, Liu H. Multi‐Dimensional Organic Mass Cytometry: Simultaneous Analysis of Proteins and Metabolites on Single Cells. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202009682] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Shuting Xu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 P. R. China
| | - Mingxia Liu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 P. R. China
| | - Yu Bai
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 P. R. China
| | - Huwei Liu
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 P. R. China
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13
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Lee DK, Rubakhin SS, Kusmartseva I, Wasserfall C, Atkinson MA, Sweedler JV. Removing Formaldehyde-Induced Peptidyl Crosslinks Enables Mass Spectrometry Imaging of Peptide Hormone Distributions from Formalin-Fixed Paraffin-Embedded Tissues. Angew Chem Int Ed Engl 2020; 59:22584-22590. [PMID: 32762062 DOI: 10.1002/anie.202008847] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 08/05/2020] [Indexed: 12/14/2022]
Abstract
Linking molecular and chemical changes to human disease states depends on the availability of appropriate clinical samples, mostly preserved as formalin-fixed paraffin-embedded (FFPE) specimens stored in tissue banks. Mass spectrometry imaging (MSI) enables the visualization of the spatiotemporal distribution of molecules in biological samples. However, MSI is not effective for imaging FFPE tissues because of the chemical modifications of analytes, including complex crosslinking between nucleophilic moieties. Here we used an MS-compatible inorganic nucleophile, hydroxylamine hydrochloride, to chemically reverse inter- and intra-crosslinks from endogenous molecules. The analyte restoration appears specific for formaldehyde-reactive amino acids. This approach enabled the MSI-assisted localization of pancreatic peptides expressed in the alpha, beta, and gamma cells. Pancreatic islet-like distributions of islet hormones were observed in human FFPE tissues preserved for more than five years, demonstrating that samples from biobanks can effectively be investigated with MSI.
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Affiliation(s)
- Dong-Kyu Lee
- Department of Chemistry and Beckman institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 S. Mathews Ave., Urbana, IL, 61801, USA
| | - Stanislav S Rubakhin
- Department of Chemistry and Beckman institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 S. Mathews Ave., Urbana, IL, 61801, USA
| | - Irina Kusmartseva
- Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, FL, 32610, USA
| | - Clive Wasserfall
- Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, FL, 32610, USA
| | - Mark A Atkinson
- Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, FL, 32610, USA
| | - Jonathan V Sweedler
- Department of Chemistry and Beckman institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 S. Mathews Ave., Urbana, IL, 61801, USA
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14
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Yang J, Wang R, Huang L, Zhang M, Niu J, Bao C, Shen N, Dai M, Guo Q, Wang Q, Wang Q, Fu Q, Qian K. Urine Metabolic Fingerprints Encode Subtypes of Kidney Diseases. Angew Chem Int Ed Engl 2019; 59:1703-1710. [PMID: 31829520 DOI: 10.1002/anie.201913065] [Citation(s) in RCA: 76] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Indexed: 12/11/2022]
Abstract
Metabolic fingerprints of biofluids encode diverse diseases and particularly urine detection offers complete non-invasiveness for diagnostics of the future. Present urine detection affords unsatisfactory performance and requires advanced materials to extract molecular information, due to the limited biomarkers and high sample complexity. Herein, we report plasmonic polymer@Ag for laser desorption/ionization mass spectrometry (LDI-MS) and sparse-learning-based metabolic diagnosis of kidney diseases. Using only 1 μL of urine without enrichment or purification, polymer@Ag afforded urine metabolic fingerprints (UMFs) by LDI-MS in seconds. Analysis by sparse learning discriminated lupus nephritis from various other non-lupus nephropathies and controls. We combined UMFs with urine protein levels (UPLs) and constructed a new diagnostic model to characterize subtypes of kidney diseases. Our work guides urine-based diagnosis and leads to new personalized analytical tools for other diseases.
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Affiliation(s)
- Jing Yang
- School of Biomedical Engineering, Med-X Research Institute, Shanghai Jiao Tong University, Shanghai, 200030, P. R. China
| | - Ran Wang
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Lin Huang
- iMS Clinic, Hangzhou, 310052, P. R. China
| | - Mengji Zhang
- School of Biomedical Engineering, Med-X Research Institute, Shanghai Jiao Tong University, Shanghai, 200030, P. R. China
| | - Jingyang Niu
- School of Biomedical Engineering, Med-X Research Institute, Shanghai Jiao Tong University, Shanghai, 200030, P. R. China
| | - Chunde Bao
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Nan Shen
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Min Dai
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Qiang Guo
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Qian Wang
- School of Biomedical Engineering, Med-X Research Institute, Shanghai Jiao Tong University, Shanghai, 200030, P. R. China
| | - Qin Wang
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Qiong Fu
- Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200001, P. R. China
| | - Kun Qian
- School of Biomedical Engineering, Med-X Research Institute, Shanghai Jiao Tong University, Shanghai, 200030, P. R. China
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15
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Yang J, Wang R, Huang L, Zhang M, Niu J, Bao C, Shen N, Dai M, Guo Q, Wang Q, Wang Q, Fu Q, Qian K. Urine Metabolic Fingerprints Encode Subtypes of Kidney Diseases. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201913065] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Jing Yang
- School of Biomedical Engineering Med-X Research Institute Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Ran Wang
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Lin Huang
- iMS Clinic Hangzhou 310052 P. R. China
| | - Mengji Zhang
- School of Biomedical Engineering Med-X Research Institute Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Jingyang Niu
- School of Biomedical Engineering Med-X Research Institute Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Chunde Bao
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Nan Shen
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Min Dai
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Qiang Guo
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Qian Wang
- School of Biomedical Engineering Med-X Research Institute Shanghai Jiao Tong University Shanghai 200030 P. R. China
| | - Qin Wang
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Qiong Fu
- Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200001 P. R. China
| | - Kun Qian
- School of Biomedical Engineering Med-X Research Institute Shanghai Jiao Tong University Shanghai 200030 P. R. China
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16
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Liu T, Feng X, Jin X, Shao M, Su Y, Zhang Y, Zhang X. Protecting the Lithium Metal Anode for a Safe Flexible Lithium‐Air Battery in Ambient Air. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201911229] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Tong Liu
- State Key Laboratory of Rare Earth Resource UtilizationChangchun Institute of Applied ChemistryChinese Academy of Sciences Changchun 130022 P. R. China
- University of Science and Technology of China Hefei 230026 P. R. China
| | - Xi‐lan Feng
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of EducationSchool of ChemistryBeihang University Beijing 100191 P. R. China
| | - Xin Jin
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of EducationSchool of ChemistryBeihang University Beijing 100191 P. R. China
| | - Ming‐zhe Shao
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of EducationSchool of ChemistryBeihang University Beijing 100191 P. R. China
| | - Yu‐tong Su
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of EducationSchool of ChemistryBeihang University Beijing 100191 P. R. China
| | - Yu Zhang
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of EducationSchool of ChemistryBeihang University Beijing 100191 P. R. China
- Beijing Advanced Innovation Center for Biomedical EngineeringBeihang University Beijing 100191 P. R. China
| | - Xin‐bo Zhang
- State Key Laboratory of Rare Earth Resource UtilizationChangchun Institute of Applied ChemistryChinese Academy of Sciences Changchun 130022 P. R. China
- University of Science and Technology of China Hefei 230026 P. R. China
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17
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Liu T, Feng XL, Jin X, Shao MZ, Su YT, Zhang Y, Zhang XB. Protecting the Lithium Metal Anode for a Safe Flexible Lithium-Air Battery in Ambient Air. Angew Chem Int Ed Engl 2019; 58:18240-18245. [PMID: 31588648 DOI: 10.1002/anie.201911229] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Indexed: 12/22/2022]
Abstract
The flexible Li-air battery (FLAB) with ultrahigh energy density is a hopeful candidate for flexible energy storage devices. However, most current FLAB operate in a pure oxygen atmosphere, which is limited by safety and corrosion issues from the metallic lithium anode and has thus greatly impeded the application of FLAB. Now, inspired by the protection effect of the umbrella, a stable hydrophobic composite polymer electrolyte (SHCPE) film with high flexibility, hydrophobicity, and stability was fabricated to protect the lithium anode. The SHCPE mitigated lithium corrosion and improved the capacity, rate performance, and cycle life (from 24 cycles to 95 cycles) of a battery in the ambient air. Based on the protection of SHCPE and the catalysis of MnOOH, the prepared pouch-type FLAB displayed high flexibility, stable performances, long cycling life (180 cycles), and excellent safety; the battery can bear soaking in water, high temperature, and nail penetration.
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Affiliation(s)
- Tong Liu
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, P. R. China.,University of Science and Technology of China, Hefei, 230026, P. R. China
| | - Xi-Lan Feng
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, P. R. China
| | - Xin Jin
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, P. R. China
| | - Ming-Zhe Shao
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, P. R. China
| | - Yu-Tong Su
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, P. R. China
| | - Yu Zhang
- Key Laboratory of Bio-inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, P. R. China.,Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, 100191, P. R. China
| | - Xin-Bo Zhang
- State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, P. R. China.,University of Science and Technology of China, Hefei, 230026, P. R. China
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18
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Louzoun‐Zada S, Jaber QZ, Fridman M. Guiding Drugs to Target‐Harboring Organelles: Stretching Drug‐Delivery to a Higher Level of Resolution. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906284] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Sivan Louzoun‐Zada
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences Tel Aviv University Tel Aviv 6997801 Israel
| | - Qais Z. Jaber
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences Tel Aviv University Tel Aviv 6997801 Israel
| | - Micha Fridman
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences Tel Aviv University Tel Aviv 6997801 Israel
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19
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Louzoun-Zada S, Jaber QZ, Fridman M. Guiding Drugs to Target-Harboring Organelles: Stretching Drug-Delivery to a Higher Level of Resolution. Angew Chem Int Ed Engl 2019; 58:15584-15594. [PMID: 31237741 DOI: 10.1002/anie.201906284] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Indexed: 01/04/2023]
Abstract
The ratio between the dose of drug required for optimal efficacy and the dose that causes toxicity is referred to as the therapeutic window. This ratio can be increased by directing the drug to the diseased tissue or pathogenic cell. For drugs targeting fungi and malignant cells, the therapeutic window can be further improved by increasing the resolution of drug delivery to the specific organelle that harbors the drug's target. Organelle targeting is challenging and is, therefore, an under-exploited strategy. Here we provide an overview of recent advances in control of the subcellular distribution of small molecules with the focus on chemical modifications. Highlighted are recent examples of active and passive organelle-specific targeting by incorporation of organelle-directing molecular determinants or by chemical modifications of the pharmacophore. The outstanding potential that lies in the development of organelle-specific drugs is becoming increasingly apparent.
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Affiliation(s)
- Sivan Louzoun-Zada
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, 6997801, Israel
| | - Qais Z Jaber
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, 6997801, Israel
| | - Micha Fridman
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, 6997801, Israel
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20
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Neumann EK, Do TD, Comi TJ, Sweedler JV. Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures. Angew Chem Int Ed Engl 2019; 58:9348-9364. [PMID: 30500998 PMCID: PMC6542728 DOI: 10.1002/anie.201811951] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Indexed: 01/14/2023]
Abstract
Cells are a basic functional and structural unit of living organisms. Both unicellular communities and multicellular species produce an astonishing chemical diversity, enabling a wide range of divergent functions, yet each cell shares numerous aspects that are common to all living organisms. While there are many approaches for studying this chemical diversity, only a few are non-targeted and capable of analyzing hundreds of different chemicals at cellular resolution. Here, we review the non-targeted approaches used to perform comprehensive chemical analyses, provide chemical imaging information, or obtain high-throughput single-cell profiling data. Single-cell measurement capabilities are rapidly increasing in terms of throughput, limits of detection, and completeness of the chemical analyses; these improvements enable their application to understand ever more complex physiological phenomena, such as learning, memory, and behavior.
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Affiliation(s)
- Elizabeth K. Neumann
- Department of Chemistry and the Beckman Institute for Advanced Science and Technology, 405 N. Mathews Avenue, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Thanh D. Do
- Department of Chemistry, 1420 Circle Drive, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Troy J. Comi
- Department of Chemistry and the Beckman Institute for Advanced Science and Technology, 405 N. Mathews Avenue, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Jonathan V. Sweedler
- Department of Chemistry and the Beckman Institute for Advanced Science and Technology, 405 N. Mathews Avenue, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States
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21
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Zhang P, Han X, Yao J, Shao N, Zhang K, Zhou Y, Zu Y, Wang B, Qin L. High‐Throughput Isolation of Cell Protrusions with Single‐Cell Precision for Profiling Subcellular Gene Expression. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201903694] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Pengchao Zhang
- Department of NanomedicineHouston Methodist Research Institute Houston TX 77030 USA
- Department of Cell and Developmental BiologyWeill Medical College of Cornell University New York NY 10065 USA
| | - Xin Han
- Department of NanomedicineHouston Methodist Research Institute Houston TX 77030 USA
- Department of Cell and Developmental BiologyWeill Medical College of Cornell University New York NY 10065 USA
- Present address: School of Medicine and Life SciencesNanjing University of Chinese Medicine Nanjing 210023 P. R. China
| | - Jun Yao
- Department of GeneticsThe University of Texas MD Anderson Cancer Center Houston TX 77030 USA
| | - Ning Shao
- Department of NanomedicineHouston Methodist Research Institute Houston TX 77030 USA
- Department of Cell and Developmental BiologyWeill Medical College of Cornell University New York NY 10065 USA
| | - Kai Zhang
- Department of NanomedicineHouston Methodist Research Institute Houston TX 77030 USA
- Department of Cell and Developmental BiologyWeill Medical College of Cornell University New York NY 10065 USA
| | - Yufu Zhou
- Department of NanomedicineHouston Methodist Research Institute Houston TX 77030 USA
- Department of Cell and Developmental BiologyWeill Medical College of Cornell University New York NY 10065 USA
| | - Youli Zu
- Department of Pathology and Genomic MedicineHouston Methodist Research Institute Houston TX 77030 USA
| | - Bin Wang
- Department of Molecular and Cellular OncologyThe University of Texas MD Anderson Cancer Center Houston TX 77030 USA
| | - Lidong Qin
- Department of NanomedicineHouston Methodist Research Institute Houston TX 77030 USA
- Department of Cell and Developmental BiologyWeill Medical College of Cornell University New York NY 10065 USA
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22
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Zhang P, Han X, Yao J, Shao N, Zhang K, Zhou Y, Zu Y, Wang B, Qin L. High-Throughput Isolation of Cell Protrusions with Single-Cell Precision for Profiling Subcellular Gene Expression. Angew Chem Int Ed Engl 2019; 58:13700-13705. [PMID: 31188523 DOI: 10.1002/anie.201903694] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Revised: 05/27/2019] [Indexed: 01/18/2023]
Abstract
Invading cancer cells extend cell protrusions, which guide cancer-cell migration and invasion, eventually leading to metastasis. The formation and activity of cell protrusions involve the localization of molecules and organelles at the cell front; however, it is challenging to precisely isolate these subcellular structures at the single-cell level for molecular analysis. Here, we describe a newly developed microfluidic platform capable of high-throughput isolation of cell protrusions at single-cell precision for profiling subcellular gene expression. Using this microfluidic platform, we demonstrate the efficient generation of uniform cell-protrusion arrays (more than 5000 cells with protrusions) for a series of cell types. We show precise isolation of cell protrusions with high purity at single-cell precision for subsequent RNA-Seq analysis, which was further validated by RT-qPCR and RNA FISH. Our highly controlled protrusion isolation method opens a new avenue for the study of subcellular functional mechanisms and signaling pathways in metastasis.
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Affiliation(s)
- Pengchao Zhang
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA.,Department of Cell and Developmental Biology, Weill Medical College of Cornell University, New York, NY, 10065, USA
| | - Xin Han
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA.,Department of Cell and Developmental Biology, Weill Medical College of Cornell University, New York, NY, 10065, USA.,Present address: School of Medicine and Life Sciences, Nanjing University of Chinese Medicine, Nanjing, 210023, P. R. China
| | - Jun Yao
- Department of Genetics, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
| | - Ning Shao
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA.,Department of Cell and Developmental Biology, Weill Medical College of Cornell University, New York, NY, 10065, USA
| | - Kai Zhang
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA.,Department of Cell and Developmental Biology, Weill Medical College of Cornell University, New York, NY, 10065, USA
| | - Yufu Zhou
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA.,Department of Cell and Developmental Biology, Weill Medical College of Cornell University, New York, NY, 10065, USA
| | - Youli Zu
- Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, Houston, TX, 77030, USA
| | - Bin Wang
- Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
| | - Lidong Qin
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA.,Department of Cell and Developmental Biology, Weill Medical College of Cornell University, New York, NY, 10065, USA
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23
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Neumann EK, Do TD, Comi TJ, Sweedler JV. Erforschung der fundamentalen Strukturen des Lebens: Nicht zielgerichtete chemische Analyse von Einzelzellen und subzellulären Strukturen. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201811951] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Elizabeth K. Neumann
- Department of Chemistry and the Beckman Institute for Advanced Science and TechnologyUniversity of Illinois at Urbana-Champaign 405 N. Mathews Avenue Urbana IL 61801 USA
| | - Thanh D. Do
- Department of ChemistryUniversity of Tennessee 1420 Circle Drive Knoxville TN 37996 USA
| | - Troy J. Comi
- Department of Chemistry and the Beckman Institute for Advanced Science and TechnologyUniversity of Illinois at Urbana-Champaign 405 N. Mathews Avenue Urbana IL 61801 USA
| | - Jonathan V. Sweedler
- Department of Chemistry and the Beckman Institute for Advanced Science and TechnologyUniversity of Illinois at Urbana-Champaign 405 N. Mathews Avenue Urbana IL 61801 USA
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24
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Affiliation(s)
- Kosuke Ino
- Graduate School of Engineering; Tohoku University; 6-6-11 Aramaki-aza Aoba, Aoba-ku Sendai 980-8579 Japan
| | - Yuji Nashimoto
- Graduate School of Engineering; Tohoku University; 6-6-11 Aramaki-aza Aoba, Aoba-ku Sendai 980-8579 Japan
- Frontier Research Institute for Interdisciplinary Sciences; Tohoku University; 6-3 Aramaki-aza Aoba, Aoba-ku Sendai 980-8578 Japan
| | - Noriko Taira
- Graduate School of Engineering; Tohoku University; 6-6-11 Aramaki-aza Aoba, Aoba-ku Sendai 980-8579 Japan
| | - Javier Ramon Azcon
- Institute for Bioengineering of Catalonia (IBEC); The Barcelona Institute of Science and Technology; Baldiri Reixac 10-12 08028 Barcelona Spain
| | - Hitoshi Shiku
- Graduate School of Engineering; Tohoku University; 6-6-11 Aramaki-aza Aoba, Aoba-ku Sendai 980-8579 Japan
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