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Bourke AM, Kennedy MJ. Spatial and Temporal Control of Protein Secretion with Light. Methods Mol Biol 2022; 2473:29-45. [PMID: 35819757 PMCID: PMC10907983 DOI: 10.1007/978-1-0716-2209-4_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
How newly synthesized integral membrane proteins and secreted factors are sorted and trafficked to the appropriate location in different cell types remains an important problem in cell biology. One powerful approach for elucidating the trafficking route of a specific protein is to sequester it following synthesis in the endoplasmic reticulum and trigger its release with an externally applied cue. Combined with fluorescent probes, this approach can be used to directly visualize each trafficking step as cargo molecules progress through the different organelles of the secretory network. Here, we discuss design strategies and practical implementation of an inducible protein secretion system we recently developed (zapalog mediated ER trap: zapERtrap) that allows one to use light to initiate secretory trafficking from targeted cells or subcellular domains. We provide detailed protocols for experiments using this approach to visualize protein trafficking from the endoplasmic reticulum to the plasma membrane in fibroblast cell lines and primary cultured neurons.
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Affiliation(s)
- Ashley M Bourke
- Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA
| | - Matthew J Kennedy
- Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA.
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2
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Kowada T, Arai K, Yoshimura A, Matsui T, Kikuchi K, Mizukami S. Optical Manipulation of Subcellular Protein Translocation Using a Photoactivatable Covalent Labeling System. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202016684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Toshiyuki Kowada
- Institute of Multidisciplinary Research for Advanced Materials Tohoku University Sendai Miyagi 980-8577 Japan
- Graduate School of Life Sciences Tohoku University Sendai Miyagi 980-8577 Japan
| | - Keisuke Arai
- Graduate School of Life Sciences Tohoku University Sendai Miyagi 980-8577 Japan
| | - Akimasa Yoshimura
- Graduate School of Engineering Osaka University 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
| | - Toshitaka Matsui
- Institute of Multidisciplinary Research for Advanced Materials Tohoku University Sendai Miyagi 980-8577 Japan
- Graduate School of Life Sciences Tohoku University Sendai Miyagi 980-8577 Japan
| | - Kazuya Kikuchi
- Graduate School of Engineering Osaka University 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
- Immunology Frontier Research Center Osaka University 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
- Center for Quantum Information and Quantum Biology Osaka University 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced Materials Tohoku University Sendai Miyagi 980-8577 Japan
- Graduate School of Life Sciences Tohoku University Sendai Miyagi 980-8577 Japan
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3
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Kowada T, Arai K, Yoshimura A, Matsui T, Kikuchi K, Mizukami S. Optical Manipulation of Subcellular Protein Translocation Using a Photoactivatable Covalent Labeling System. Angew Chem Int Ed Engl 2021; 60:11378-11383. [PMID: 33644979 DOI: 10.1002/anie.202016684] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 02/15/2021] [Indexed: 12/21/2022]
Abstract
The photoactivatable chemically induced dimerization (photo-CID) technique for tag-fused proteins is one of the most promising methods for regulating subcellular protein translocations and protein-protein interactions. However, light-induced covalent protein dimerization in living cells has yet to be established, despite its various advantages. Herein, we developed a photoactivatable covalent protein-labeling technology by applying a caged ligand to the BL-tag system, a covalent protein labeling system that uses mutant β-lactamase. We further developed CBHD, a caged protein dimerizer, using caged BL-tag and HaloTag ligands, and achieved light-induced protein translocation from the cytoplasm to subcellular regions. In addition, this covalent photo-CID system enabled quick protein translocation to a laser-illuminated microregion. These results indicate that the covalent photo-CID system will expand the scope of CID applications in the optical manipulation of cellular functions.
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Affiliation(s)
- Toshiyuki Kowada
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi, 980-8577, Japan.,Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, 980-8577, Japan
| | - Keisuke Arai
- Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, 980-8577, Japan
| | - Akimasa Yoshimura
- Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Toshitaka Matsui
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi, 980-8577, Japan.,Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, 980-8577, Japan
| | - Kazuya Kikuchi
- Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.,Immunology Frontier Research Center, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.,Center for Quantum Information and Quantum Biology, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi, 980-8577, Japan.,Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, 980-8577, Japan
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4
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Klewer L, Wu Y. Light-Induced Dimerization Approaches to Control Cellular Processes. Chemistry 2019; 25:12452-12463. [PMID: 31304989 PMCID: PMC6790656 DOI: 10.1002/chem.201900562] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 05/13/2019] [Indexed: 12/20/2022]
Abstract
Light-inducible approaches provide a means to control biological systems with spatial and temporal resolution that is unmatched by traditional genetic perturbations. Recent developments of optogenetic and chemo-optogenetic systems for induced proximity in cells facilitate rapid and reversible manipulation of highly dynamic cellular processes and have become valuable tools in diverse biological applications. New expansions of the toolbox facilitate control of signal transduction, genome editing, "painting" patterns of active molecules onto cellular membranes, and light-induced cell cycle control. A combination of light- and chemically induced dimerization approaches have also seen interesting progress. Herein, an overview of optogenetic systems and emerging chemo-optogenetic systems is provided, and recent applications in tackling complex biological problems are discussed.
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Affiliation(s)
- Laura Klewer
- Max Planck Institute of Molecular PhysiologyOtto-Hahn-Str. 1144227DortmundGermany
| | - Yao‐Wen Wu
- Department of ChemistryUmeå Centre for Microbial ResearchUmeå University90187UmeåSweden
- Max Planck Institute of Molecular PhysiologyOtto-Hahn-Str. 1144227DortmundGermany
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5
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Mashita T, Kowada T, Takahashi H, Matsui T, Mizukami S. Light‐Wavelength‐Based Quantitative Control of Dihydrofolate Reductase Activity by Using a Photochromic Isostere of an Inhibitor. Chembiochem 2019; 20:1382-1386. [DOI: 10.1002/cbic.201800816] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2018] [Indexed: 12/27/2022]
Affiliation(s)
- Takato Mashita
- Department of ChemistryGraduate School of ScienceTohoku University 6-3, Aoba Aramaki Aoba-ku Sendai Miyagi 980–8578 Japan
| | - Toshiyuki Kowada
- Institute of Multidisciplinary Research for Advanced MaterialsTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
- Department of ChemistryGraduate School of ScienceTohoku University 6-3, Aoba Aramaki Aoba-ku Sendai Miyagi 980–8578 Japan
- Graduate School of Life SciencesTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
| | - Hiroto Takahashi
- Institute of Multidisciplinary Research for Advanced MaterialsTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
| | - Toshitaka Matsui
- Institute of Multidisciplinary Research for Advanced MaterialsTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
- Department of ChemistryGraduate School of ScienceTohoku University 6-3, Aoba Aramaki Aoba-ku Sendai Miyagi 980–8578 Japan
- Graduate School of Life SciencesTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced MaterialsTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
- Department of ChemistryGraduate School of ScienceTohoku University 6-3, Aoba Aramaki Aoba-ku Sendai Miyagi 980–8578 Japan
- Graduate School of Life SciencesTohoku University 2-1-1, Katahira Aoba-ku Sendai Miyagi 980–8577 Japan
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Chen X, Venkatachalapathy M, Dehmelt L, Wu YW. Multidirectional Activity Control of Cellular Processes by a Versatile Chemo-optogenetic Approach. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806976] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Xi Chen
- Chemical Genomics Centre of the Max Planck Society; Otto-Hahn-Str. 15 44227 Dortmund Germany
- Max Planck Institute of Molecular Physiology; Otto-Hahn-Str. 11 44227 Dortmund Germany
| | - Muthukumaran Venkatachalapathy
- Max Planck Institute of Molecular Physiology; Otto-Hahn-Str. 11 44227 Dortmund Germany
- Fakultät für Chemie und Chemische Biologie; Technische Universität Dortmund; Emil-Figge-Straße 50 44227 Dortmund Germany
| | - Leif Dehmelt
- Max Planck Institute of Molecular Physiology; Otto-Hahn-Str. 11 44227 Dortmund Germany
- Fakultät für Chemie und Chemische Biologie; Technische Universität Dortmund; Emil-Figge-Straße 50 44227 Dortmund Germany
| | - Yao-Wen Wu
- Chemical Genomics Centre of the Max Planck Society; Otto-Hahn-Str. 15 44227 Dortmund Germany
- Max Planck Institute of Molecular Physiology; Otto-Hahn-Str. 11 44227 Dortmund Germany
- Department of Chemistry; Umeå Centre for Microbial Research; Umeå University; 90187 Umeå Sweden
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Chen X, Venkatachalapathy M, Dehmelt L, Wu YW. Multidirectional Activity Control of Cellular Processes by a Versatile Chemo-optogenetic Approach. Angew Chem Int Ed Engl 2018; 57:11993-11997. [PMID: 30048030 PMCID: PMC6175152 DOI: 10.1002/anie.201806976] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Indexed: 12/23/2022]
Abstract
The spatiotemporal dynamics of proteins or organelles plays a vital role in controlling diverse cellular processes. However, acute control of activity at distinct locations within a cell is challenging. A versatile multidirectional activity control (MAC) approach is presented, which employs a photoactivatable system that may be dimerized upon chemical inducement. The system comprises second‐generation SLF*‐TMP (S*T) and photocaged NvocTMP‐Cl dimerizers; where, SLF*‐TMP features a synthetic ligand of the FKBP(F36V) binding protein, Nvoc is a caging group, and TMP is the antibiotic trimethoprim. Two MAC strategies are demonstrated to spatiotemporally control cellular signaling and intracellular cargo transport. The novel platform enables tunable, reversible, and rapid control of activity at multiple compartments in living cells.
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Affiliation(s)
- Xi Chen
- Chemical Genomics Centre of the Max Planck Society, Otto-Hahn-Str. 15, 44227, Dortmund, Germany.,Max Planck Institute of Molecular Physiology, Otto-Hahn-Str. 11, 44227, Dortmund, Germany
| | - Muthukumaran Venkatachalapathy
- Max Planck Institute of Molecular Physiology, Otto-Hahn-Str. 11, 44227, Dortmund, Germany.,Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Emil-Figge-Straße 50, 44227, Dortmund, Germany
| | - Leif Dehmelt
- Max Planck Institute of Molecular Physiology, Otto-Hahn-Str. 11, 44227, Dortmund, Germany.,Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Emil-Figge-Straße 50, 44227, Dortmund, Germany
| | - Yao-Wen Wu
- Chemical Genomics Centre of the Max Planck Society, Otto-Hahn-Str. 15, 44227, Dortmund, Germany.,Max Planck Institute of Molecular Physiology, Otto-Hahn-Str. 11, 44227, Dortmund, Germany.,Department of Chemistry, Umeå Centre for Microbial Research, Umeå University, 90187, Umeå, Sweden
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