1
|
Ozefe F, Arslan Yildiz A. Fabrication and development of a microfluidic paper-based immunosorbent assay platform (μPISA) for colorimetric detection of hepatitis C. Analyst 2023; 148:898-905. [PMID: 36688900 DOI: 10.1039/d2an01761j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Paper-based microfluidics is an emerging analysis tool used in various applications, especially in point-of-care (PoC) diagnostic applications, due to its advantages over other types of microfluidic devices in terms of simplicity in both production and operation, cost-effectiveness, rapid response time, low sample consumption, biocompatibility, and ease of disposal. Recently, various techniques have been developed and utilized for the fabrication of paper-based microfluidics, such as photolithography, micro-embossing, wax and PDMS printing, etc. In this study, we offer a fabrication methodology for a microfluidic paper-based immunosorbent assay (μPISA) platform and the detection of Hepatitis C Virus (HCV) was carried out to validate this platform. A laser ablation technique was utilized to form hydrophobic barriers easily and rapidly, which was the major advantage of the developed fabrication methodology. The characterization of the μPISA platform was performed in terms of micro-channel properties using bright-field (BF) microscopy, and surface properties using scanning electron microscopy (SEM). At the same time, sample volume and liquid handling capacity were analyzed quantitatively. Ablation speed (S) and laser power (P) were optimized, and it was shown that one combination (10P60S) provided minimal deviation in micro-channel dimensions and prevented deterioration of hydrophobic barriers. Also, the minimum hydrophobic barrier width, which prevents cross-barrier bleeding, was determined to be 255.92 ± 10.01 μm. Furthermore, colorimetric HCV NS3 detection was implemented to optimize and validate the μPISA platform. Here, HCV NS3 in both PBS and human blood plasma was successfully detected by the naked eye at concentrations as low as 1 ng mL-1 and 10 ng mL-1, respectively. Moreover, the limit of detection (LoD) values for HCV NS3 were acquired as 0.796 ng mL-1 in PBS and 2.203 ng mL-1 in human blood plasma with a turnaround time of 90 min. In comparison with conventional ELISA, highly sensitive and rapid HCV NS3 detection was accomplished colorimetrically on the developed μPISA platform.
Collapse
Affiliation(s)
- Fatih Ozefe
- İzmir Institute of Technology (IZTECH), Faculty of Engineering, Department of Bioengineering, 35430, Urla, Izmir, Turkey.
| | - Ahu Arslan Yildiz
- İzmir Institute of Technology (IZTECH), Faculty of Engineering, Department of Bioengineering, 35430, Urla, Izmir, Turkey.
| |
Collapse
|
2
|
Chen C, Meng H, Guo T, Deshpande S, Chen H. Development of Paper Microfluidics with 3D-Printed PDMS Barriers for Flow Control. ACS APPLIED MATERIALS & INTERFACES 2022; 14:40286-40296. [PMID: 36001301 DOI: 10.1021/acsami.2c08541] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Paper microfluidics has been extensively exploited as a powerful tool for environmental and medical detection applications. Both flow delay and compatibility with either polar or non-polar reagents are indispensable for the automation of detections requiring multiple reaction steps. This article reports the systematic studies of a 3D-printing protocol, characterization, and application of both the partially and fully penetrated polydimethylsiloxane (PDMS) barriers for flexible flow control in paper microfluidics. The physical parameters of PDMS barriers printed using a simple liquid dispenser were found related to the printing pressure, speed, diffusion time after printing, baking temperature, and PDMS viscosity. The capability of PDMS barriers to confine the flow of non-polar solvents was demonstrated using oil flow in both wax- and PDMS-surrounded channels. It was identified that the minimum width of channels to prevent leakage was 470 ± 54 μm, which was as narrow as that fabricated using stamps from lithography. Both the partially penetrated barriers (PPBs) and constriction channels were of the capability to delay flow in paper microfluidics. Additionally, an in silico investigation led to the further understanding that the reduction of channel cross-section resulting from PPBs was the primary reason for flow delay. Our results suggest that increasing the penetration depth of the barriers is more efficient in delaying flow than increasing the PPB length. Finally, devices with four inlet channels and 0-6 PPBs across each channel were successfully applied in flow delay for sequential fluid delivery. These results improve the understanding of the major factors, affecting the 3D PDMS barrier fabrication and the resulting flow control in paper microfluidics, providing practical implications for applications in various fields.
Collapse
Affiliation(s)
- Chang Chen
- School of Mechanical Engineering and Automation, Harbin Institute of Technology, Shenzhen, Shenzhen 518055, China
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University & Research, Stippeneng 4, Wageningen 6708 WE, The Netherlands
| | - Haixu Meng
- School of Mechanical Engineering and Automation, Harbin Institute of Technology, Shenzhen, Shenzhen 518055, China
| | - Tianruo Guo
- Graduate School of Biomedical Engineering, The University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Siddharth Deshpande
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University & Research, Stippeneng 4, Wageningen 6708 WE, The Netherlands
| | - Huaying Chen
- School of Mechanical Engineering and Automation, Harbin Institute of Technology, Shenzhen, Shenzhen 518055, China
| |
Collapse
|
3
|
Ruiz RA, Gonzalez JL, Vazquez-Alvarado M, Martinez NW, Martinez AW. Beyond Wax Printing: Fabrication of Paper-Based Microfluidic Devices Using a Thermal Transfer Printer. Anal Chem 2022; 94:8833-8837. [PMID: 35694851 DOI: 10.1021/acs.analchem.2c01534] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Paper-based microfluidic devices, also known as microPADs, are an emerging analytical platform with the potential to improve point-of-care diagnostics. MicroPADs are fabricated by patterning hydrophobic inks onto sheets of paper to create hydrophilic channels and test zones. One of the main advantages of microPADs is that they are inexpensive and simple to fabricate, making them accessible even to researchers with limited budgets or no prior fabrication expertise. Wax printing, where a solid ink printer is used to pattern wax on paper, has been the most convenient and popular method for fabricating paper-based microfluidic devices. Unfortunately, solid ink printers were discontinued in 2016 and are no longer available commercially. Here we introduce a method for fabricating microPADs using a portable thermal transfer printer that retains the convenience of wax printing. Devices fabricated by thermal transfer printing were comparable to devices fabricated via wax printing and laser printing. The low cost, convenience, and portability of the thermal transfer printer make this approach an exciting prospect for replacing wax printing and facilitating the continued development of paper-based microfluidics.
Collapse
Affiliation(s)
- Ryan A Ruiz
- Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, California 93407, United States
| | - Jorge L Gonzalez
- Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, California 93407, United States
| | - Miguel Vazquez-Alvarado
- Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, California 93407, United States
| | - Nathaniel W Martinez
- Department of Biological Sciences, California Polytechnic State University, San Luis Obispo, California 93407, United States
| | - Andres W Martinez
- Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, California 93407, United States
| |
Collapse
|
4
|
Sinha A, Basu M, Chandna P. Paper based microfluidics: A forecast toward the most affordable and rapid point-of-care devices. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2022; 186:109-158. [PMID: 35033281 DOI: 10.1016/bs.pmbts.2021.07.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
The microfluidic industry has evolved through years with acquired scientific knowledge from different, and already developed industries. Consequently, a wide range of materials like silicon from the electronic industry to all the way, silicone, from the chemical engineering industry, has been spotted to solve similar challenges. Although a typical microfluidic chip, fabricated from glass or polymer substrates offers definite benefits, however, paper-based microfluidic analytical devices (μPADs) possess numerous special benefits for practical implementation at a lower price. Owing to these features, in recent years, paper microfluidics has drawn immense interest from researchers in industry and academia alike. These devices have wider applications with advantages like lower cost, speedy detection, user-easiness, biocompatibility, sensitivity, and specificity etc. when compared to other microfluidic devices. Therefore, these sensitive but affordable devices fit themselves into point-of-care (POC) testing with features in demand like natural disposability, situational flexibility, and the capability to store and analyze the target at the point of requirement. Gradually, advancements in fabrication technologies, assay development techniques, and improved packaging capabilities, have contributed significantly to the real-time identification and health investigation through paper microfluidics; however, the growth has not been limited to the biomedical field; industries like electronics, energy storage and many more have expanded substantially. Here, we represent an overall state of the paper-based microfluidic technology by covering the fundamentals, working principles, different fabrication procedures, applications for various needs and then to make things more practical, the real-life scenario and practical challenges involved in launching a device into the market have been revealed. To conclude, recent contribution of μPADs in the 2020 pandemic and potential future possibilities have been reviewed.
Collapse
|
5
|
Huang K, Castiaux A, Podicheti R, Rusch DB, Martin RS, Baker LA. A Hybrid Nanofiber/Paper Cell Culture Platform for Building a 3D Blood-brain Barrier Model. SMALL METHODS 2021; 5:2100592. [PMID: 34541301 PMCID: PMC8445000 DOI: 10.1002/smtd.202100592] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Indexed: 05/16/2023]
Abstract
The blood brain barrier (BBB) protects the central nervous system from toxins and pathogens in the blood by regulating permeation of molecules through the barrier interface. In vitro BBB models described to date reproduce some aspects of BBB functionality, but also suffer from incomplete phenotypic expression of brain endothelial traits, difficulty in reproducibility and fabrication, or overall cost. To address these limitations, we describe a three-dimensional (3D) BBB model based on a hybrid paper/nanofiber scaffold. The cell culture platform utilizes lens paper as a framework to accommodate 3D culture of astrocytes. An electrospun nanofiber layer is coated onto one face of the paper to mimic the basement membrane and support growth of an organized two-dimensional layer of endothelial cells (ECs). Human induced pluripotent stem cell-derived ECs and astrocytes are co-cultured to develop a human BBB model. Morphological and spatial organization of model are validated with confocal microscopy. Measurements of transendothelial resistance and permeability demonstrate the BBB model develops a high-quality barrier and responds to hyperosmolar treatments. RNA-sequencing shows introduction of astrocytes both regulates EC tight junction proteins and improves endothelial phenotypes related to vasculogenesis. This model shows promise as a model platform for future in vitro studies of the BBB.
Collapse
Affiliation(s)
- Kaixiang Huang
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, USA
| | - Andre Castiaux
- Department of Chemistry and Center for Additive Manufacturing, Saint Louis University, 3501 Laclede Avenue, St. Louis, Missouri 63103, USA
| | - Ram Podicheti
- Center for Genomics and Bioinformatics, Indiana University Bloomington, 1001 East Third St., Bloomington, Indiana 47405, USA
| | - Douglas B Rusch
- Center for Genomics and Bioinformatics, Indiana University Bloomington, 1001 East Third St., Bloomington, Indiana 47405, USA
| | - R Scott Martin
- Department of Chemistry and Center for Additive Manufacturing, Saint Louis University, 3501 Laclede Avenue, St. Louis, Missouri 63103, USA
| | - Lane A Baker
- Department of Chemistry, Indiana University Bloomington, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, USA
| |
Collapse
|
6
|
Lin W, Gandhi S, Oviedo Lara AR, Thomas AK, Helbig R, Zhang Y. Controlling Surface Wettability for Automated In Situ Array Synthesis and Direct Bioscreening. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2102349. [PMID: 34309086 DOI: 10.1002/adma.202102349] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Revised: 04/30/2021] [Indexed: 06/13/2023]
Abstract
The in situ synthesis of biomolecules on glass surfaces for direct bioscreening can be a powerful tool in the fields of pharmaceutical sciences, biomaterials, and chemical biology. However, it is still challenging to 1) achieve this conventional multistep combinatorial synthesis on glass surfaces with small feature sizes and high yields and 2) develop a surface which is compatible with solid-phase syntheses, as well as the subsequent bioscreening. This work reports an amphiphilic coating of a glass surface on which small droplets of polar aprotic organic solvents can be deposited with an enhanced contact angle and inhibited motion to permit fully automated multiple rounds of the combinatorial synthesis of small-molecule compounds and peptides. This amphiphilic coating can be switched into a hydrophilic network for protein- and cell-based screening. Employing this in situ synthesis method, chemical space can be probed via array technology with unprecedented speed for various applications, such as lead discovery/optimization in medicinal chemistry and biomaterial development.
Collapse
Affiliation(s)
- Weilin Lin
- B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307, Dresden, Germany
| | - Shanil Gandhi
- B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307, Dresden, Germany
| | - Alan Rodrigo Oviedo Lara
- B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307, Dresden, Germany
| | - Alvin K Thomas
- B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307, Dresden, Germany
| | - Ralf Helbig
- Leibniz Institute of Polymer Research Dresden, Max Bergmann Center of Biomaterials Dresden, Hohe Strasse 6, 01069, Dresden, Germany
| | - Yixin Zhang
- B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307, Dresden, Germany
- Cluster of Excellence "Physics of Life", Technische Universität Dresden, 01062, Dresden, Germany
| |
Collapse
|
7
|
van Teijlingen A, Tuttle T. Beyond Tripeptides Two-Step Active Machine Learning for Very Large Data sets. J Chem Theory Comput 2021; 17:3221-3232. [PMID: 33904712 PMCID: PMC8278388 DOI: 10.1021/acs.jctc.1c00159] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Self-assembling peptide nanostructures have been shown to be of great importance in nature and have presented many promising applications, for example, in medicine as drug-delivery vehicles, biosensors, and antivirals. Being very promising candidates for the growing field of bottom-up manufacture of functional nanomaterials, previous work (Frederix, et al. 2011 and 2015) has screened all possible amino acid combinations for di- and tripeptides in search of such materials. However, the enormous complexity and variety of linear combinations of the 20 amino acids make exhaustive simulation of all combinations of tetrapeptides and above infeasible. Therefore, we have developed an active machine-learning method (also known as "iterative learning" and "evolutionary search method") which leverages a lower-resolution data set encompassing the whole search space and a just-in-time high-resolution data set which further analyzes those target peptides selected by the lower-resolution model. This model uses newly generated data upon each iteration to improve both lower- and higher-resolution models in the search for ideal candidates. Curation of the lower-resolution data set is explored as a method to control the selected candidates, based on criteria such as log P. A major aim of this method is to produce the best results in the least computationally demanding way. This model has been developed to be broadly applicable to other search spaces with minor changes to the algorithm, allowing its use in other areas of research.
Collapse
Affiliation(s)
| | - Tell Tuttle
- Department of Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K
| |
Collapse
|
8
|
Temirel M, Dabbagh SR, Tasoglu S. Hemp-Based Microfluidics. MICROMACHINES 2021; 12:mi12020182. [PMID: 33673025 PMCID: PMC7917756 DOI: 10.3390/mi12020182] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 02/05/2021] [Accepted: 02/08/2021] [Indexed: 12/22/2022]
Abstract
Hemp is a sustainable, recyclable, and high-yield annual crop that can be used to produce textiles, plastics, composites, concrete, fibers, biofuels, bionutrients, and paper. The integration of microfluidic paper-based analytical devices (µPADs) with hemp paper can improve the environmental friendliness and high-throughputness of µPADs. However, there is a lack of sufficient scientific studies exploring the functionality, pros, and cons of hemp as a substrate for µPADs. Herein, we used a desktop pen plotter and commercial markers to pattern hydrophobic barriers on hemp paper, in a single step, in order to characterize the ability of markers to form water-resistant patterns on hemp. In addition, since a higher resolution results in densely packed, cost-effective devices with a minimized need for costly reagents, we examined the smallest and thinnest water-resistant patterns plottable on hemp-based papers. Furthermore, the wicking speed and distance of fluids with different viscosities on Whatman No. 1 and hemp papers were compared. Additionally, the wettability of hemp and Whatman grade 1 paper was compared by measuring their contact angles. Besides, the effects of various channel sizes, as well as the number of branches, on the wicking distance of the channeled hemp paper was studied. The governing equations for the wicking distance on channels with laser-cut and hydrophobic side boundaries are presented and were evaluated with our experimental data, elucidating the applicability of the modified Washburn equation for modeling the wicking distance of fluids on hemp paper-based microfluidic devices. Finally, we validated hemp paper as a substrate for the detection and analysis of the potassium concentration in artificial urine.
Collapse
Affiliation(s)
- Mikail Temirel
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA;
| | - Sajjad Rahmani Dabbagh
- Department of Mechanical Engineering, Koç University, Sariyer, Istanbul 34450, Turkey;
- Koç University Arçelik Research Center for Creative Industries (KUAR), Koç University, Sariyer, Istanbul 34450, Turkey
| | - Savas Tasoglu
- Department of Mechanical Engineering, Koç University, Sariyer, Istanbul 34450, Turkey;
- Koç University Arçelik Research Center for Creative Industries (KUAR), Koç University, Sariyer, Istanbul 34450, Turkey
- Boğaziçi Institute of Biomedical Engineering, Boğaziçi University, Çengelköy, Istanbul 34684, Turkey
- Koc University Research Center for Translational Medicine, Koç University, Sariyer, Istanbul 34450, Turkey
- Center for Life Sciences and Technologies, Bogazici University, Bebek, Istanbul 34470, Turkey
- Correspondence:
| |
Collapse
|
9
|
Wetzel R, Hauser S, Lin W, Berg P, Werner C, Pietzsch J, Kempermann G, Zhang Y. Screening Arrays of Laminin Peptides on Modified Cellulose for Promotion of Adhesion of Primary Endothelial and Neural Precursor Cells. Adv Biol (Weinh) 2021. [DOI: 10.1002/adbi.201900303] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Richard Wetzel
- B CUBE Center for Molecular Bioengineering Technische Universität Dresden Tatzberg 41 Dresden 01307 Germany
| | - Sandra Hauser
- Department of Radiopharmaceutical and Chemical Biology Helmholtz‐Zentrum Dresden‐Rossendorf Institute of Radiopharmaceutical Cancer Research Bautzner Landstraße 400 Dresden 01328 Germany
| | - Weilin Lin
- B CUBE Center for Molecular Bioengineering Technische Universität Dresden Tatzberg 41 Dresden 01307 Germany
| | - Peggy Berg
- B CUBE Center for Molecular Bioengineering Technische Universität Dresden Tatzberg 41 Dresden 01307 Germany
| | - Carsten Werner
- Leibniz Institute of Polymer Research Dresden Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials Hohe Str. 6 Dresden 01069 Germany
| | - Jens Pietzsch
- Department of Radiopharmaceutical and Chemical Biology Helmholtz‐Zentrum Dresden‐Rossendorf Institute of Radiopharmaceutical Cancer Research Bautzner Landstraße 400 Dresden 01328 Germany
- Faculty of Chemistry and Food Chemistry, School of Science Technische Universität Dresden Dresden 01062 Germany
| | - Gerd Kempermann
- German Center for Neurodegenerative Diseases (DZNE) Tatzberg 41 Dresden 01307 Germany
- CRTD—Center for Regenerative Therapies Dresden Technische Universität Dresden Fetscherstraße 105 Dresden 01307 Germany
| | - Yixin Zhang
- B CUBE Center for Molecular Bioengineering Technische Universität Dresden Tatzberg 41 Dresden 01307 Germany
| |
Collapse
|
10
|
Agarwal T, Borrelli MR, Makvandi P, Ashrafizadeh M, Maiti TK. Paper-Based Cell Culture: Paving the Pathway for Liver Tissue Model Development on a Cellulose Paper Chip. ACS APPLIED BIO MATERIALS 2020; 3:3956-3974. [DOI: 10.1021/acsabm.0c00558] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Tarun Agarwal
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India
| | - Mimi R. Borrelli
- Department of Surgery, Stanford University School of Medicine, Stanford, California 94305, United States
| | - Pooyan Makvandi
- Institute for Polymers, Composites and Biomaterials (IPCB), National Research Council (CNR), Naples 80078, Italy
| | - Milad Ashrafizadeh
- Department of Basic Science, Faculty of Veterinary Medicine, University of Tabriz, Tabriz 51666-16471, Iran
| | - Tapas Kumar Maiti
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India
| |
Collapse
|
11
|
Flow Chemistry in Contemporary Chemical Sciences: A Real Variety of Its Applications. Molecules 2020; 25:molecules25061434. [PMID: 32245225 PMCID: PMC7146634 DOI: 10.3390/molecules25061434] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 03/14/2020] [Accepted: 03/16/2020] [Indexed: 12/15/2022] Open
Abstract
Flow chemistry is an area of contemporary chemistry exploiting the hydrodynamic conditions of flowing liquids to provide particular environments for chemical reactions. These particular conditions of enhanced and strictly regulated transport of reagents, improved interface contacts, intensification of heat transfer, and safe operation with hazardous chemicals can be utilized in chemical synthesis, both for mechanization and automation of analytical procedures, and for the investigation of the kinetics of ultrafast reactions. Such methods are developed for more than half a century. In the field of chemical synthesis, they are used mostly in pharmaceutical chemistry for efficient syntheses of small amounts of active substances. In analytical chemistry, flow measuring systems are designed for environmental applications and industrial monitoring, as well as medical and pharmaceutical analysis, providing essential enhancement of the yield of analyses and precision of analytical determinations. The main concept of this review is to show the overlapping of development trends in the design of instrumentation and various ways of the utilization of specificity of chemical operations under flow conditions, especially for synthetic and analytical purposes, with a simultaneous presentation of the still rather limited correspondence between these two main areas of flow chemistry.
Collapse
|
12
|
Agarwal T, Biswas P, Pal S, Maiti TK, Chakraborty S, Ghosh SK, Dhar R. Inexpensive and Versatile Paper-Based Platform for 3D Culture of Liver Cells and Related Bioassays. ACS APPLIED BIO MATERIALS 2020; 3:2522-2533. [PMID: 35025303 DOI: 10.1021/acsabm.0c00237] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Tarun Agarwal
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| | - Pratik Biswas
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| | - Sampriti Pal
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| | - Tapas Kumar Maiti
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| | - Suman Chakraborty
- Department of Mechanical Engineering, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| | - Sudip Kumar Ghosh
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| | - Riddhiman Dhar
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal 721302, India
| |
Collapse
|
13
|
Brehm M, Heissler S, Afonin S, Levkin PA. Nanomolar Synthesis in Droplet Microarrays with UV-Triggered On-Chip Cell Screening. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e1905971. [PMID: 31985878 DOI: 10.1002/smll.201905971] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 12/04/2019] [Indexed: 06/10/2023]
Abstract
Miniaturization and parallelization of combinatorial organic synthesis is important to accelerate the process of drug discovery while reducing the consumption of reagents and solvents. This work presents a miniaturized platform for on-chip solid-phase combinatorial library synthesis with UV-triggered on-chip cell screening. The platform is based on a nanoporous polymer coating on a glass slide, which is modified via photolithography to yield arrays of hydrophilic (HL) spots surrounded by superhydrophobic (SH) surface. The combination of HL spots and SH background enables confinement of nanoliter droplets, functioning as miniaturized reactors for the solid-phase synthesis. The polymer serves as support for nanomolar solid-phase synthesis, while a photocleavable linker enables the release of the synthesized compounds into the droplets containing live cells. A 588 compound library of bisamides is synthesized via a four-component Ugi reaction on the chip and products are detected via stamping of the droplet array onto a conductive substrate and subsequent matrix-assisted laser desorption ionization mass spectrometry. The light-induced cleavage shows high flexibility in screening conditions by spatial, temporal, and quantitative control.
Collapse
Affiliation(s)
- Marius Brehm
- Karlsruhe Institute of Technology (KIT), Institute of Toxicology and Genetics, Hermann-von Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Stefan Heissler
- Karlsruhe Institute of Technology (KIT), Institute of Functional Interfaces, Hermann-von Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Sergii Afonin
- Karlsruhe Institute of Technology (KIT), Institute of Biological Interfaces (IBG-2), POB 3640, 76021, Karlsruhe, Germany
| | - Pavel A Levkin
- Karlsruhe Institute of Technology (KIT), Institute of Toxicology and Genetics, Hermann-von Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
- Karlsruhe Institute of Technology (KIT), Institute of Organic Chemistry, Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
| |
Collapse
|
14
|
Cramer SM, Larson TS, Lockett MR. Tissue Papers: Leveraging Paper-Based Microfluidics for the Next Generation of 3D Tissue Models. Anal Chem 2019; 91:10916-10926. [PMID: 31356054 PMCID: PMC7071790 DOI: 10.1021/acs.analchem.9b02102] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Paper-based scaffolds support the three-dimensional culture of mammalian cells in tissue-like environments. These Tissue Papers, a name that highlights the use of materials obtained from (plant) tissue to generate newly functioning (human) tissue structures, are a promising analytical tool to quantify cellular responses in physiologically relevant extracellular gradients and coculture architectures. Here, we highlight current examples of Tissue Papers, commonly used methods of analysis, and current measurement challenges.
Collapse
Affiliation(s)
- Sabrina M. Cramer
- Department of Chemistry, University of North Carolina at Chapel Hill, Kenan and Caudill Laboratories, Chapel Hill, North Carolina 27599-3290, United States
| | - Tyler S. Larson
- Department of Chemistry, University of North Carolina at Chapel Hill, Kenan and Caudill Laboratories, Chapel Hill, North Carolina 27599-3290, United States
| | - Matthew R. Lockett
- Department of Chemistry, University of North Carolina at Chapel Hill, Kenan and Caudill Laboratories, Chapel Hill, North Carolina 27599-3290, United States
- Lineberger Comprehensive Cancer Center, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-7295, United States
| |
Collapse
|
15
|
Mattes DS, Jung N, Weber LK, Bräse S, Breitling F. Miniaturized and Automated Synthesis of Biomolecules-Overview and Perspectives. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2019; 31:e1806656. [PMID: 31033052 DOI: 10.1002/adma.201806656] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2018] [Revised: 02/02/2019] [Indexed: 06/09/2023]
Abstract
Chemical synthesis is performed by reacting different chemical building blocks with defined stoichiometry, while meeting additional conditions, such as temperature and reaction time. Such a procedure is especially suited for automation and miniaturization. Life sciences lead the way to synthesizing millions of different oligonucleotides in extremely miniaturized reaction sites, e.g., pinpointing active genes in whole genomes, while chemistry advances different types of automation. Recent progress in matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) imaging could match miniaturized chemical synthesis with a powerful analytical tool to validate the outcome of many different synthesis pathways beyond applications in the life sciences. Thereby, due to the radical miniaturization of chemical synthesis, thousands of molecules can be synthesized. This in turn should allow ambitious research, e.g., finding novel synthesis routes or directly screening for photocatalysts. Herein, different technologies are discussed that might be involved in this endeavor. A special emphasis is given to the obstacles that need to be tackled when depositing tiny amounts of materials to many different extremely miniaturized reaction sites.
Collapse
Affiliation(s)
- Daniela S Mattes
- Institute of Microstructure Technology (IMT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Nicole Jung
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
| | - Laura K Weber
- Institute of Microstructure Technology (IMT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Stefan Bräse
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
| | - Frank Breitling
- Institute of Microstructure Technology (IMT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| |
Collapse
|
16
|
Wang M, Wang Y, Gao B, Bian Y, Liu X, He Z, Zeng Y, Du X, Gu Z. Fast Strategy to Functional Paper Surfaces. ACS APPLIED MATERIALS & INTERFACES 2019; 11:14445-14456. [PMID: 30907571 DOI: 10.1021/acsami.9b00512] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Paper, with advantages of low-cost, easy fabrication and disposal, flexibility and renewability, is a suitable substrate material for various applications. Functionalization and patterning on paper substrates are commonly required in many applications. Although many methods have been developed to achieve this, they typically suffer from some drawbacks such as time-consuming process, specific device dependence, lack of flexibility, low patterning resolution, and so forth. Herein, we present a general and fast method to functionalize paper sheets and create patterns. The whole modification process can be completed in 10 min and can be applied on various types of paper substrates and other natural materials such as natural fabrics. By our method, many commonly used functional groups can be covalently attached and patterned on paper substrates, while the characteristic features of the original paper substrates, for example, color, transparency, and conductivity, can be perfectly retained after modification to allow these properties to be incorporated into the resultant materials. High-resolution patterns can be created on paper by applying a photomask during the modification or controlling the time of modification to precisely control the functionality at any area on the obtained paper substrates. We also show the potential applications of our method in the fabrication of superhydrophobic coatings and biomaterials.
Collapse
Affiliation(s)
- Min Wang
- Department of Oncology, Nanjing First Hospital , Nanjing Medical University , Nanjing 210006 , China
| | | | - Bingbing Gao
- School of Pharmaceutical Sciences and School of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing 211816 , China
| | | | | | | | | | | | | |
Collapse
|
17
|
Chou Y, Kitova EN, Joe M, Brunton R, Lowary TL, Klassen JS, Derda R. Genetically-encoded fragment-based discovery (GE-FBD) of glycopeptide ligands with differential selectivity for antibodies related to mycobacterial infections. Org Biomol Chem 2019; 16:223-227. [PMID: 29255817 DOI: 10.1039/c7ob02783d] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Accurate identification of tuberculosis (TB), caused by Mycobacterium tuberculosis, is important for global disease management. Point-of-care serological tests may improve TB diagnosis; however, specificities of available serodiagnostics are sub-optimal. We employed genetically encoded fragment-based discovery (GE-FBD) to select ligands for antibodies directed against the mycobacterial cell wall component lipoarabinomannan (LAM), a potent antigen. GE-FBD employed a phage displayed library of 108 heptapeptides, chemically modified with an arabinofuranosyl hexasaccharide fragment of LAM (Ara6), and the anti-LAM antibody CS-35 as a bait. The selection gave rise to glycopeptides with an enhanced affinity and selectivity for CS-35 but not for 906.4321 antibody, both of which bind to Ara6 with a comparable affinity. Multivalent assays incorporating the discovered ligands Ara6-ANSSFAP, Ara6-DAHATLR and Ara6-TTYVVNP exhibited up to 19-fold discrimination between CS-35 and 906.4321. The use of the Ara6 antigen alone failed to distinguish these antibodies. Thus, GE-FBD gives rise to ligands that differentiate monoclonal antibodies with enhanced specificity. This technology could facilitate the development of effective point-of-care serological tests for mycobacterial and other infections.
Collapse
Affiliation(s)
- Ying Chou
- Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2G2.
| | | | | | | | | | | | | |
Collapse
|
18
|
Isidro-Llobet A, Kenworthy MN, Mukherjee S, Kopach ME, Wegner K, Gallou F, Smith AG, Roschangar F. Sustainability Challenges in Peptide Synthesis and Purification: From R&D to Production. J Org Chem 2019; 84:4615-4628. [PMID: 30900880 DOI: 10.1021/acs.joc.8b03001] [Citation(s) in RCA: 196] [Impact Index Per Article: 39.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
In recent years, there has been a growing interest in therapeutic peptides within the pharmaceutical industry with more than 50 peptide drugs on the market, approximately 170 in clinical trials, and >200 in preclinical development. However, the current state of the art in peptide synthesis involves primarily legacy technologies with use of large amounts of highly hazardous reagents and solvents and little focus on green chemistry and engineering. In 2016, the ACS Green Chemistry Institute Pharmaceutical Roundtable identified development of greener processes for peptide API as a critical unmet need, and as a result, a new Roundtable team formed to address this important area. The initial focus of this new team is to highlight best practices in peptide synthesis and encourage much needed innovations. In this Perspective, we aim to summarize the current challenges of peptide synthesis and purification in terms of sustainability, highlight possible solutions, and encourage synergies between academia, the pharmaceutical industry, and contract research organizations/contract manufacturing organizations.
Collapse
Affiliation(s)
- Albert Isidro-Llobet
- Medicines Research Centre , GlaxoSmithKline , Gunnels Wood Road , Stevenage SG1 2NY , U.K
| | - Martin N Kenworthy
- Pharmaceutical Technology and Development , AstraZeneca , Silk Road Business Park, Charter Way , Macclesfield SK10 2NA , U.K
| | - Subha Mukherjee
- Chemical and Synthetic Development , Bristol-Myers Squibb Company , One Squibb Drive , New Brunswick , New Jersey 08903 , United States
| | - Michael E Kopach
- Small Molecule Design and Development , Eli Lilly and Company , 1400 West Raymond Street , Indianapolis , Indiana , United States
| | - Katarzyna Wegner
- Active Pharmaceutical Ingredient Development , IPSEN Manufacturing Ireland, Ltd. , Blanchardstown Industrial Park , Dublin 15 , Ireland
| | - Fabrice Gallou
- Chemical & Analytical Development , Novartis , 4056 Basel , Switzerland
| | - Austin G Smith
- Drug Substance Process Development , Amgen, Inc. , 1 Amgen Center Drive , Thousand Oaks , California 91320 , United States
| | - Frank Roschangar
- Chemical Development , Boehringer Ingelheim Pharmaceuticals , Ridgefield , Connecticut 06877 , United States
| |
Collapse
|
19
|
Behren S, Westerlind U. Glycopeptides and -Mimetics to Detect, Monitor and Inhibit Bacterial and Viral Infections: Recent Advances and Perspectives. Molecules 2019; 24:E1004. [PMID: 30871155 PMCID: PMC6471658 DOI: 10.3390/molecules24061004] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Revised: 03/06/2019] [Accepted: 03/07/2019] [Indexed: 11/17/2022] Open
Abstract
The initial contact of pathogens with host cells is usually mediated by their adhesion to glycan structures present on the cell surface in order to enable infection. Furthermore, glycans play important roles in the modulation of the host immune responses to infection. Understanding the carbohydrate-pathogen interactions are of importance for the development of novel and efficient strategies to either prevent, or interfere with pathogenic infection. Synthetic glycopeptides and mimetics thereof are capable of imitating the multivalent display of carbohydrates at the cell surface, which have become an important objective of research over the last decade. Glycopeptide based constructs may function as vaccines or anti-adhesive agents that interfere with the ability of pathogens to adhere to the host cell glycans and thus possess the potential to improve or replace treatments that suffer from resistance. Additionally, synthetic glycopeptides are used as tools for epitope mapping of antibodies directed against structures present on various pathogens and have become important to improve serodiagnostic methods and to develop novel epitope-based vaccines. This review will provide an overview of the most recent advances in the synthesis and application of glycopeptides and glycopeptide mimetics exhibiting a peptide-like backbone in glycobiology.
Collapse
Affiliation(s)
- Sandra Behren
- Department of Chemistry, Umeå University, 90187 Umeå, Sweden.
| | | |
Collapse
|
20
|
Michael IJ, Kumar S, Oh JM, Kim D, Kim J, Cho YK. Surface-Engineered Paper Hanging Drop Chip for 3D Spheroid Culture and Analysis. ACS APPLIED MATERIALS & INTERFACES 2018; 10:33839-33846. [PMID: 30192134 DOI: 10.1021/acsami.8b08778] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Protein corona coated onto the hydrophilic cellulose fiber turns into hydrophobic upon UV irradiation without hindering the porosity of the paper while simultaneously reducing nonspecific adsorption. Taking advantage of the biofouling-resistant, hydrophobic, and fluid transport through property, we demonstrated hanging drop three-dimensional (3D) spheroid culture and in-site analysis, including drug testing, time-dependent detection of secreted protein, and fluorescence staining without disturbing the spheroids. This single hanging drop system can also be extended to a networked hanging drop chip to mimic in vivo microphysiology by combining with wax-patterned microfluidic channels, where well-to-well interaction can be accurately controlled in a passive manner. As a proof of concept, the effects of a concentration gradient of nutrient and variable dosage of anticancer drugs were studied in the 3D spheroids cultured on paper. The experimental results suggested that a complex network device could be fabricated on a large scale on demand at a minimal cost for 3D spheroid culture. Our method demonstrates a future possibility for paper as a low cost, high-throughput 3D spheroid-based "body-on-a-chip" platform material.
Collapse
Affiliation(s)
- Issac J Michael
- Department of Biomedical Engineering, School of Life Sciences , Ulsan National Institute of Science and Technology (UNIST) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
- Center for Soft and Living Matter , Institute for Basic Science (IBS) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
| | - Sumit Kumar
- Center for Soft and Living Matter , Institute for Basic Science (IBS) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
| | - Jung Min Oh
- Department of Biomedical Engineering, School of Life Sciences , Ulsan National Institute of Science and Technology (UNIST) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
- Center for Soft and Living Matter , Institute for Basic Science (IBS) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
| | - Dongyoung Kim
- Center for Soft and Living Matter , Institute for Basic Science (IBS) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
| | - Junyoung Kim
- Department of Biomedical Engineering, School of Life Sciences , Ulsan National Institute of Science and Technology (UNIST) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
- Center for Soft and Living Matter , Institute for Basic Science (IBS) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
| | - Yoon-Kyoung Cho
- Department of Biomedical Engineering, School of Life Sciences , Ulsan National Institute of Science and Technology (UNIST) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
- Center for Soft and Living Matter , Institute for Basic Science (IBS) , UNIST-gil 50 , Ulsan 44919 , Republic of Korea
| |
Collapse
|
21
|
Bretel G, Rull-Barrull J, Nongbe MC, Terrier JP, Le Grognec E, Felpin FX. Hydrophobic Covalent Patterns on Cellulose Paper through Photothiol-X Ligations. ACS OMEGA 2018; 3:9155-9159. [PMID: 31459049 PMCID: PMC6644802 DOI: 10.1021/acsomega.8b01317] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 07/30/2018] [Indexed: 06/10/2023]
Abstract
In the current study, we introduce photothiol-X chemistry as a powerful method to create hydrophobic patterns covalently grafted to the surface of cellulose paper. The general strategy builds on the use of a cellulose-based molecular printboard featuring disulfide functions which upon spatiocontrolled light irradiation at 365 nm allows robust photothiol-X ligations with hydrophobic moieties. A screening of structurally diverse molecular architectures as hydrophobic coating was conducted, and the most impressive result obtained with cholesterol moieties allows the creation of spatially well-resolved hydrophobic patterns with a contact angle of 140.8°. Our discoveries are supported by in-depth characterization studies using Fourier transform infrared spectroscopy, X-ray photoelectron spectrometry, and scanning electron microscopy analyses.
Collapse
Affiliation(s)
- Guillaume Bretel
- Université
de Nantes, UFR des Sciences et des Techniques, CNRS
UMR 6230, CEISAM, 2 rue
de la Houssinière, 44322 Nantes Cedex 3, France
| | - Jordi Rull-Barrull
- Université
de Nantes, UFR des Sciences et des Techniques, CNRS
UMR 6230, CEISAM, 2 rue
de la Houssinière, 44322 Nantes Cedex 3, France
| | - Medy C. Nongbe
- Université
de Nantes, UFR des Sciences et des Techniques, CNRS
UMR 6230, CEISAM, 2 rue
de la Houssinière, 44322 Nantes Cedex 3, France
| | - Jean-Philippe Terrier
- Université
de Nantes, IFSTTAR, MAST, Route de Bouaye, 44344 Bouguenais Cedex, France
| | - Erwan Le Grognec
- Université
de Nantes, UFR des Sciences et des Techniques, CNRS
UMR 6230, CEISAM, 2 rue
de la Houssinière, 44322 Nantes Cedex 3, France
| | - François-Xavier Felpin
- Université
de Nantes, UFR des Sciences et des Techniques, CNRS
UMR 6230, CEISAM, 2 rue
de la Houssinière, 44322 Nantes Cedex 3, France
- Institut
Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
| |
Collapse
|
22
|
Toley BJ, Das D, Ganar KA, Kaur N, Meena M, Rath D, Sathishkumar N, Soni S. Multidimensional Paper Networks: A New Generation of Low-Cost Pump-Free Microfluidic Devices. J Indian Inst Sci 2018. [DOI: 10.1007/s41745-018-0077-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
|
23
|
Bai R, Li L, Liu M, Yan S, Miao C, Li R, Luo Y, Liu T, Lin B, Ji Y, Lu Y. Paper-Based 3D Scaffold for Multiplexed Single Cell Secretomic Analysis. Anal Chem 2018; 90:5825-5832. [DOI: 10.1021/acs.analchem.8b00362] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Ruihan Bai
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, Jiangsu 210009, China
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Linmei Li
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Meimei Liu
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Shiqiang Yan
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Chunyue Miao
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, Jiangsu 210009, China
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Ruijun Li
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, Jiangsu 210009, China
| | - Yong Luo
- State Key Laboratory of Fine Chemicals, Department of Chemical Engineering & School of Pharmaceutical Science and Technology, Dalian University of Technology, Dalian, Liaoning 116024, China
| | - Tingjiao Liu
- College of Stomatology, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Bingcheng Lin
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Yibing Ji
- Department of Analytical Chemistry, China Pharmaceutical University, Nanjing, Jiangsu 210009, China
| | - Yao Lu
- Department of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| |
Collapse
|
24
|
Kenney RM, Lloyd CC, Whitman NA, Lockett MR. 3D cellular invasion platforms: how do paper-based cultures stack up? Chem Commun (Camb) 2018. [PMID: 28621775 DOI: 10.1039/c7cc02357j] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Cellular invasion is the gateway to metastasis, which is the leading cause of cancer-related deaths. Invasion is driven by a number of chemical and mechanical stresses that arise in the tumor microenvironment. In vitro assays are needed for the systematic study of cancer progress. To be truly predictive, these assays must generate tissue-like environments that can be experimentally controlled and manipulated. While two-dimensional (2D) monolayer cultures are easily assembled and evaluated, they lack the extracellular components needed to assess invasion. Three-dimensional (3D) cultures are better suited for invasion studies because they generate cellular phenotypes that are more representative of those found in vivo. This feature article provides an overview of four invasion platforms. We focus on paper-based cultures, an emerging 3D culture platform capable of generating tissue-like structures and quantifying cellular invasion. Paper-based cultures are as easily assembled and analyzed as monolayers, but provide an experimentally powerful platform capable of supporting: co-cultures and representative extracellular environments; experimentally controlled gradients; readouts capable of quantifying, discerning, and separating cells based on their invasiveness. With a series of examples we highlight the potential of paper-based cultures, and discuss how they stack up against other invasion platforms.
Collapse
Affiliation(s)
- Rachael M Kenney
- Department of Chemistry, University of North Carolina at Chapel Hill, Kenan and Caudill Laboratories, 125 South Road, Chapel Hill, NC 27599-3290, USA.
| | | | | | | |
Collapse
|
25
|
Hou J, Liu T, Chen R, Liu J, Chen J, Zhao C, Yin L, Li C, Xu X, Shi Q, Yin J. Guided protein/cell patterning on superhydrophilic polymer brushes functionalized with mussel-inspired polydopamine coatings. Chem Commun (Camb) 2018; 53:6708-6711. [PMID: 28585627 DOI: 10.1039/c7cc02460f] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A simple approach for preparing bicomponent polymer patterns was developed by coating polydopamine (PDA) on superhydrophilic poly(2-acryl-amido-2-methylpropane sulfonic acid) (PAMPS) brushes. Well-defined and versatile arrays of proteins and cells were achieved without harm to proteins and cells.
Collapse
Affiliation(s)
- Jianwen Hou
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China.
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
26
|
Kim YS, Yang Y, Henry CS. Laminated and infused Parafilm® - paper for paper-based analytical devices. SENSORS AND ACTUATORS. B, CHEMICAL 2018; 255:3654-3661. [PMID: 29180835 PMCID: PMC5701284 DOI: 10.1016/j.snb.2017.10.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Numerous fabrication methods have been reported for microfluidic paper-based analytical devices (μPADs) using barrier materials ranging from photoresist to wax. While these methods have been used with wide success, consistently producing small, high-resolution features using materials and methods that are compatible with solvents and surfactants remains a challenge. Two new methods are presented here for generating μPADs with well-defined, high-resolution structures compatible with solvents and surfactant-containing solutions by partially or fully fusing paper with Parafilm® followed by cutting with a CO2 laser cutter. Partial fusion leads to laminated paper (l-paper) while the complete fusion results in infused paper (i-paper). Patterned structures in l-paper were fabricated by selective removal of the paper but not the underlying Parafilm® using a benchtop CO2 laser. Under optimized conditions, a gap as small as 137 ± 22 μm could be generated. Using this approach, a miniaturized paper 384-zone plate, consisting of circular detection elements with a diameter of 1.86 mm, was fabricated in 64 × 43 mm2 area. Furthermore, these ablation-patterned substrates were confirmed to be compatible with surfactant solutions and common organic solvents (methanol, acetonitrile and dimethylformamide), which has been achieved by very few μPAD patterning techniques. Patterns in i-paper were created by completely cutting out zones of the i-paper and then fixing pre-cut paper into these openings similar to the strategy of fitting a jigsaw piece into a puzzle. Upon heating, unmodified paper was readily sealed into these openings due to partial reflow of the paraffin into the paper. This unique and simple bonding method was illustrated by two types of 3D μPADs, a push-on valve and a time-gated flow distributor, without adding adhesive layers. The free-standing jigsaw-patterned sheets showed good structural stability and solution compatibility, which provided a facile alternative method for fabricating complicated μPADs.
Collapse
Affiliation(s)
- Yong Shin Kim
- Department of Applied Chemistry, Hanyang University, Ansan 15588, Republic of Korea
| | - Yuanyuan Yang
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Charles S. Henry
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
- Department of Biomedical Engineering, Colorado State University, Fort Collins, Colorado 80523, United States
| |
Collapse
|
27
|
An Open Software Platform for the Automated Design of Paper-Based Microfluidic Devices. Sci Rep 2017; 7:16224. [PMID: 29176646 PMCID: PMC5701164 DOI: 10.1038/s41598-017-16542-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Accepted: 11/09/2017] [Indexed: 11/13/2022] Open
Abstract
Paper-based microfluidic devices have many applications in biomedical and environmental analysis. However, the process of prototyping device designs can be tedious, error-prone, and time-consuming. Here, we present a cross-platform, open-source software tool—AutoPAD—developed to quickly create and modify device designs and provide a free alternative to commercial design software. The capabilities that we designed to be inherent to AutoPAD (e.g., automatic zone alignment and design refactoring) highlight its potential use in nearly any paper-based microfluidic device application and for creating nearly any desired design, which we demonstrate through the recreation of numerous device designs from the literature.
Collapse
|
28
|
Zhang Y, Li T, Ren T, Fang D, He J. Hydrophobic/lipophobic barrier capable of confining aggressive liquids for paper-based assay. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2017.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
|
29
|
Fernandes SC, Walz JA, Wilson DJ, Brooks JC, Mace CR. Beyond Wicking: Expanding the Role of Patterned Paper as the Foundation for an Analytical Platform. Anal Chem 2017; 89:5654-5664. [PMID: 28406607 DOI: 10.1021/acs.analchem.6b03860] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
While a number of assays for soluble analytes have been developed using paper-based microfluidic devices, the detection and analysis of blood cells has remained an outstanding challenge. In this Feature, we discuss how the properties of paper determine the performance of paper-based microfluidic devices and permit the design of cellular assays, which can ultimately impact disparities in healthcare that exist in limited-resource settings.
Collapse
Affiliation(s)
- Syrena C Fernandes
- Department of Chemistry, Tufts University , 62 Talbot Avenue, Medford, Massachusetts 02155, United States
| | - Jenna A Walz
- Department of Chemistry, Tufts University , 62 Talbot Avenue, Medford, Massachusetts 02155, United States
| | - Daniel J Wilson
- Department of Chemistry, Tufts University , 62 Talbot Avenue, Medford, Massachusetts 02155, United States
| | - Jessica C Brooks
- Department of Chemistry, Tufts University , 62 Talbot Avenue, Medford, Massachusetts 02155, United States
| | - Charles R Mace
- Department of Chemistry, Tufts University , 62 Talbot Avenue, Medford, Massachusetts 02155, United States
| |
Collapse
|
30
|
López-Pérez PM, Grimsey E, Bourne L, Mikut R, Hilpert K. Screening and Optimizing Antimicrobial Peptides by Using SPOT-Synthesis. Front Chem 2017; 5:25. [PMID: 28447030 PMCID: PMC5388751 DOI: 10.3389/fchem.2017.00025] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 03/29/2017] [Indexed: 11/14/2022] Open
Abstract
Peptide arrays on cellulose are a powerful tool to investigate peptide interactions with a number of different molecules, for examples antibodies, receptors or enzymes. Such peptide arrays can also be used to study interactions with whole cells. In this review, we focus on the interaction of small antimicrobial peptides with bacteria. Antimicrobial peptides (AMPs) can kill multidrug-resistant (MDR) human pathogenic bacteria and therefore could be next generation antibiotics targeting MDR bacteria. We describe the screen and the result of different optimization strategies of peptides cleaved from the membrane. In addition, screening of antibacterial activity of peptides that are tethered to the surface is discussed. Surface-active peptides can be used to protect surfaces from bacterial infections, for example implants.
Collapse
Affiliation(s)
| | - Elizabeth Grimsey
- Institute for Infection and Immunity, St. George's University of LondonLondon, UK
| | - Luc Bourne
- Institute for Infection and Immunity, St. George's University of LondonLondon, UK
| | - Ralf Mikut
- Karlsruhe Institute of Technology (KIT), Institute for Applied Computer Science (IAI)Eggenstein-Leopoldshafen, Germany
| | - Kai Hilpert
- TiKa Diagnostics LtdLondon, UK
- Institute for Infection and Immunity, St. George's University of LondonLondon, UK
| |
Collapse
|
31
|
Tronser T, Popova AA, Levkin PA. Miniaturized platform for high-throughput screening of stem cells. Curr Opin Biotechnol 2017; 46:141-149. [PMID: 28388486 DOI: 10.1016/j.copbio.2017.03.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Accepted: 03/03/2017] [Indexed: 01/06/2023]
Abstract
Over the past decades stem cells have gained great interest in clinical research, tissue engineering and regenerative medicine, due to their ability of self-renewal and potential to differentiate into the various cell types of the organism. The long-term maintenance of these unique properties and the control of stem cell differentiation in vitro, however, remains challenging, thus limiting their applicability in these fields. High-throughput screening (HTS) of stem cells is widely used by the researchers in order to gain more insight in the underlying mechanisms of stem cell fate as well as identifying compounds and factors maintaining stemness. However, limited availability and expandability of stem cells restricts the use of microtiter plates for HTS of stem cells emitting the urge for miniaturized platforms. This review highlights recent advances in the development of miniaturized platforms for HTS of stem cells and presents novel designs of miniaturized HTS systems.
Collapse
Affiliation(s)
- Tina Tronser
- Karlsruhe Institute of Technology (KIT), Institute of Toxicology and Genetics (ITG), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Anna A Popova
- Karlsruhe Institute of Technology (KIT), Institute of Toxicology and Genetics (ITG), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Pavel A Levkin
- Karlsruhe Institute of Technology (KIT), Institute of Toxicology and Genetics (ITG), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany; Karlsruhe Institute of Technology (KIT), Institute of Organic Chemistry, 76131 Karlsruhe, Germany.
| |
Collapse
|
32
|
de Lange V, Habegger M, Schmidt M, Vörös J. Improving FoRe: A New Inlet Design for Filtering Samples through Individual Microarray Spots. ACS Sens 2017; 2:339-345. [PMID: 28723211 DOI: 10.1021/acssensors.6b00271] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this publication we present an improvement to our previously introduced vertical flow microarray, the FoRe array, which capitalizes on the fusion of immunofiltration and densely packed micron test sites. Filtering samples through individual microarray spots allows us to rapidly analyze dilute samples with high-throughput and high signal-to-noise. Unlike other flowthrough microarrays, in the FoRe design samples are injected into micron channels and sequentially exposed to different targets. This arrangement makes it possible to increase the sensitivity of the microarray by simply increasing the sample volume or to rapidly reconcentrate samples after preprocessing steps dilute the analyte. Here we present a new inlet system which allows us to increase the analyzed sample volume without compromising the micron spot size and dense layout. We combined this with a model assay to demonstrate that the device is sensitive to the amount of antigen, and as a result, sample volume directly correlates to sensitivity. We introduced a simple technique for analysis of blood, which previously clogged the nanometer-sized pores, requiring only microliter volumes expected from an infant heel prick. A drop of blood is mixed with buffer to separate the plasma before reconcentrating the sample on the microarray spot. We demonstrated the success of this procedure by spiking TNF-α into blood and achieved a limit of detection of 18 pM. Compared to traditional protein microarrays, the FoRe array is still inexpensive, customizable, and simple to use, and thanks to these improvements has a broad range of applications from small animal studies to environmental monitoring.
Collapse
Affiliation(s)
- Victoria de Lange
- Laboratory of Biosensors
and Bioelectronics, Institute for Biomedical Engineering, University and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland
| | - Marco Habegger
- Laboratory of Biosensors
and Bioelectronics, Institute for Biomedical Engineering, University and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland
| | - Marco Schmidt
- Laboratory of Biosensors
and Bioelectronics, Institute for Biomedical Engineering, University and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland
| | - János Vörös
- Laboratory of Biosensors
and Bioelectronics, Institute for Biomedical Engineering, University and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland
| |
Collapse
|
33
|
Dermutz H, Thompson-Steckel G, Forró C, de Lange V, Dorwling-Carter L, Vörös J, Demkó L. Paper-based patterned 3D neural cultures as a tool to study network activity on multielectrode arrays. RSC Adv 2017. [DOI: 10.1039/c7ra00971b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
High-throughput platform targeting activity patterns of 3D neural cultures with arbitrary topology, by combining network-wide intracellular and local extracellular signals.
Collapse
Affiliation(s)
- Harald Dermutz
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| | - Greta Thompson-Steckel
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| | - Csaba Forró
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| | - Victoria de Lange
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| | - Livie Dorwling-Carter
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| | - János Vörös
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| | - László Demkó
- Laboratory of Biosensors and Bioelectronics
- Institute for Biomedical Engineering
- ETH Zurich
- CH-8092 Zurich
- Switzerland
| |
Collapse
|
34
|
Lin E, Sikand A, Wickware J, Hao Y, Derda R. Peptide microarray patterning for controlling and monitoring cell growth. Acta Biomater 2016; 34:53-59. [PMID: 26805426 DOI: 10.1016/j.actbio.2016.01.028] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Revised: 01/09/2016] [Accepted: 01/20/2016] [Indexed: 02/08/2023]
Abstract
The fate of cells is influenced by their microenvironment and many cell types undergo differentiation when stimulated by extracellular cues, such as soluble growth factors and the insoluble extracellular matrix (ECM). Stimulating differentiation by insoluble or "immobilized" cues is a particularly attractive method because it allows for the induction of differentiation in a spatially-defined cohort of cells within a larger subpopulation. To improve the design of de novo screening of such insoluble factors, we describe a methodology for producing high-density peptide microarrays suitable for extended cell culture and fluorescence microscopy. As a model, we used a murine mammary gland cell line (NMuMG) that undergoes epithelial to mesenchymal transition (EMT) in response to soluble transforming growth factor beta (TGF-β) and surface-immobilized peptides that target TGF-β receptors (TGFβRI/II). We repurposed a well-established DNA microarray printing technique to produce arrays of micropatterned surfaces that displayed TGFβRI/II-binding peptides and integrin binding peptides. Upon long-term culture on these arrays, only NMuMG cells residing on EMT-stimulating areas exhibited growth arrest and decreased E-cadherin expression. We believe that the methodology created in this report will aid the development of peptide-decorated surfaces that can locally stimulate defined cell surface receptors and control EMT and other well-characterized differentiation events. STATEMENT OF SIGNIFICANCE Scope of work: This manuscript aims to accelerate the development of instructive biomaterials decorated with specific ligands that target cell-surface receptors and induce specific differentiation of cells upon contact. These materials can be used for practical applications, such as fabricating synthetic materials for large scale, stem cell culture, or investigating differentiation and asymmetric division in stem cells. Specifically, in this manuscript, we repurposed a DNA microarray printer to produce microarrays of peptide-terminated self-assembled monolayers (SAMs). To demonstrate the utility of these arrays in phenotypic assays with mammalian cells, we monitored the induction of epithelial to mesenchymal transition (EMT) in murine mammary epithelial cells using specific peptide ligands printed on these arrays. Novelty: We, and others, have published several strategies for producing peptide-based arrays suitable for long-term phenotypic assays. Many reports relied on patterning steps that made adaptation difficult. The use of a DNA microarray printer as the sole production tool simplified the production of peptide microarrays and increased the throughput of this technology. We confirmed that simplification in production did not compromise the performance of the array; it is still possible to study short-term adhesion, long-term growth, and complex phenotypic responses, such as EMT, in the cells. EMT was studied using immunofluorescent staining after four days of culture. IMPACT This methodology will serve as a foundation for future screening of instructive biomaterials in our research group. As DNA printers are broadly available in academic institutions, we foresee rapid adaptation of this approach by academic researchers.
Collapse
|
35
|
Simon KA, Mosadegh B, Minn KT, Lockett MR, Mohammady MR, Boucher DM, Hall AB, Hillier SM, Udagawa T, Eustace BK, Whitesides GM. Metabolic response of lung cancer cells to radiation in a paper-based 3D cell culture system. Biomaterials 2016; 95:47-59. [PMID: 27116031 DOI: 10.1016/j.biomaterials.2016.03.002] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2015] [Revised: 02/29/2016] [Accepted: 03/02/2016] [Indexed: 02/06/2023]
Abstract
This work demonstrates the application of a 3D culture system-Cells-in-Gels-in-Paper (CiGiP)-in evaluating the metabolic response of lung cancer cells to ionizing radiation. The 3D tissue-like construct-prepared by stacking multiple sheets of paper containing cell-embedded hydrogels-generates a gradient of oxygen and nutrients that decreases monotonically in the stack. Separating the layers of the stack after exposure enabled analysis of the cellular response to radiation as a function of oxygen and nutrient availability; this availability is dictated by the distance between the cells and the source of oxygenated medium. As the distance between the cells and source of oxygenated media increased, cells show increased levels of hypoxia-inducible factor 1-alpha, decreased proliferation, and reduced sensitivity to ionizing radiation. Each of these cellular responses are characteristic of cancer cells observed in solid tumors. With this setup we were able to differentiate three isogenic variants of A549 cells based on their metabolic radiosensitivity; these three variants have known differences in their metastatic behavior in vivo. This system can, therefore, capture some aspects of radiosensitivity of populations of cancer cells related to mass-transport phenomenon, carry out systematic studies of radiation response in vitro that decouple effects from migration and proliferation of cells, and regulate the exposure of oxygen to subpopulations of cells in a tissue-like construct either before or after irradiation.
Collapse
Affiliation(s)
- Karen A Simon
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA
| | - Bobak Mosadegh
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, 60 Oxford Street, Cambridge, MA 02138, USA; Dalio Institute of Cardiovascular Imaging, Department of Radiology, Weill Cornell Medicine, 413 E. 69th Street Suite BRB-108, New York, NY 10021, USA
| | - Kyaw Thu Minn
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA
| | - Matthew R Lockett
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA; Department of Chemistry, University of North Carolina at Chapel Hill, 125 South Road, Chapel Hill, NC 27599, USA
| | - Marym R Mohammady
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA
| | - Diane M Boucher
- Vertex Pharmaceuticals Incorporated, 50 Northern Blvd., Boston, MA 02210, USA
| | - Amy B Hall
- Vertex Pharmaceuticals Incorporated, 50 Northern Blvd., Boston, MA 02210, USA
| | - Shawn M Hillier
- Vertex Pharmaceuticals Incorporated, 50 Northern Blvd., Boston, MA 02210, USA
| | - Taturo Udagawa
- Vertex Pharmaceuticals Incorporated, 50 Northern Blvd., Boston, MA 02210, USA
| | - Brenda K Eustace
- Vertex Pharmaceuticals Incorporated, 50 Northern Blvd., Boston, MA 02210, USA.
| | - George M Whitesides
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, 60 Oxford Street, Cambridge, MA 02138, USA.
| |
Collapse
|
36
|
Abstract
Cellulose has emerged as an attractive substrate for the production of economical, disposable, point-of-care (POC) analytical devices. Development of novel methods of (bio)activation is central to broadening the application space of cellulosic materials. Ironically, such efforts are stymied by the inherent biocompatibility and recalcitrance of cellulose fibers. Here, we have elaborated a versatile, chemo-enzymatic approach to activate cellulosic materials for CuAAC "click chemistry", to develop new fluorogenic esterase sensors. Gentle, aqueous modification conditions facilitate broad applicability to cellulose papers, gauzes, and hydrogels. Tethering of the released fluorophore to the cellulose surface prevents signal degradation due to diffusion and enables straightforward, sensitive visualization with a simple light source in resource-limited situations.
Collapse
Affiliation(s)
- Fatemeh Derikvand
- The Michael Smith Laboratories and Department of Chemistry, University of British Columbia , 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada
| | - DeLu Tyler Yin
- The Michael Smith Laboratories and Department of Chemistry, University of British Columbia , 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada
| | - Ryan Barrett
- The Michael Smith Laboratories and Department of Chemistry, University of British Columbia , 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada
| | - Harry Brumer
- The Michael Smith Laboratories and Department of Chemistry, University of British Columbia , 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada
| |
Collapse
|
37
|
Deiss F, Yang Y, Derda R. Parallel Syntheses of Peptides on Teflon-Patterned Paper Arrays (SyntArrays). Methods Mol Biol 2016; 1368:249-71. [PMID: 26614081 DOI: 10.1007/978-1-4939-3136-1_18] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Screening of peptides to find the ligands that bind to specific targets is an important step in drug discovery. These high-throughput screens require large number of structural variants of peptides to be synthesized and tested. This chapter describes the generation of arrays of peptides on Teflon-patterned sheets of paper. First, the protocol describes the patterning of paper with a Teflon solution to produce arrays with solvophobic barriers that are able to confine organic solvents. Next, we describe the parallel syntheses of 96 peptides on Teflon-patterned arrays using the SPOT synthesis method.
Collapse
Affiliation(s)
- Frédérique Deiss
- Department of Chemistry, Alberta Glycomics Center, University of Alberta, 11227 Saskatchewan Drive, Edmonton, AB, Canada, T6G 2G2
| | - Yang Yang
- Department of Chemistry, Alberta Glycomics Center, University of Alberta, 11227 Saskatchewan Drive, Edmonton, AB, Canada, T6G 2G2
| | - Ratmir Derda
- Department of Chemistry, Alberta Glycomics Center, University of Alberta, 11227 Saskatchewan Drive, Edmonton, AB, Canada, T6G 2G2.
| |
Collapse
|
38
|
Deiss F, Yang Y, Matochko WL, Derda R. Heat-enhanced peptide synthesis on Teflon-patterned paper. Org Biomol Chem 2016; 14:5148-56. [DOI: 10.1039/c6ob00898d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this report, we describe the methodology for 96 parallel organic syntheses of peptides on Teflon-patterned paper assisted by heating with an infra-red lamp.
Collapse
Affiliation(s)
- Frédérique Deiss
- Department of Chemistry and Alberta Glycomics Centre
- University of Alberta
- Edmonton
- Canada
| | - Yang Yang
- Department of Chemistry and Alberta Glycomics Centre
- University of Alberta
- Edmonton
- Canada
| | - Wadim L. Matochko
- Department of Chemistry and Alberta Glycomics Centre
- University of Alberta
- Edmonton
- Canada
| | - Ratmir Derda
- Department of Chemistry and Alberta Glycomics Centre
- University of Alberta
- Edmonton
- Canada
| |
Collapse
|
39
|
An approach to enhance self-compensation capability in paper-based devices for chemical sensing. Talanta 2015; 145:29-34. [PMID: 26459440 DOI: 10.1016/j.talanta.2015.04.085] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Revised: 04/27/2015] [Accepted: 04/28/2015] [Indexed: 11/21/2022]
Abstract
This paper describes a simple design for increasing the tolerance of reagent dislocation on a paper-based platform using a combination of wax-treated paper and a vortex mixer. To date, massive budgetary funds are required in the biotechnological industry to develop new applications; a large part of that cost is attributable to the screening of specific chemical compounds. Here, we propose using a liquid-handling robot to automatically deposit selected reagents on a paper-based platform. We also present a preliminary concept approach for developing a reagent placing device with simple and inexpensive features. A defect of inaccuracy was observed between droplet location and test well location after viewing the performance of the liquid-handling robot on our paper-based platform. Because of dislocation error resulting from robotic reagent placement, we decided to apply an external, rotational force following droplet placement in order to compensate for the distance of reagent dislocation. Note, the largest distance of reagent dislocation was determined by examining the results of altering applied reagent volume, but not concentration, in volumes from 5 µL to 30 µL in a series of experiments. As a result of these experiments, we observed that dislocation was positively affected by an increase in applied volume. A colorimetric assay for nitrite detection was also performed to confirm the feasibility of this method. This work, we believe, can minimize the cost of chemical compound screening for the biotechnological industry.
Collapse
|
40
|
Jahanshahi-Anbuhi S, Pennings K, Leung V, Kannan B, Brennan JD, Filipe CDM, Pelton RH. Design Rules for Fluorocarbon-Free Omniphobic Solvent Barriers in Paper-Based Devices. ACS APPLIED MATERIALS & INTERFACES 2015; 7:25434-25440. [PMID: 26496157 DOI: 10.1021/acsami.5b08301] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The utility of hydrophobic wax barriers in paper-based lateral flow and multiwell devices for containment of aqueous solvents was extended to organic solvents and challenging aqueous surfactant solutions by preparation of a three layer barrier, consisting of internal pullulan impregnated paper barriers surrounded by external wax barriers. When paper impregnated with pullulan solution dries, the polymer forms solvent blocking lenses in the paper structure. Lens formation was illustrated by forming pullulan lenses in glass capillaries. The lens shapes were less curved compared to the predictions of a model based upon minimizing surface area. For barriers on Whatman # 1 filter paper, the pullulan molecular weight must be greater than ∼70 kDa, the mass fraction of pullulan in the barrier zone must be at least 32%, and there are restrictions on the minimum width of the pullulan impregnated zone.
Collapse
Affiliation(s)
- Sana Jahanshahi-Anbuhi
- Biointerfaces Institute, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L8, Canada
- Department of Chemical Engineering, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L7, Canada
| | - Kevin Pennings
- Department of Chemical Engineering, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L7, Canada
| | | | - Balamurali Kannan
- Biointerfaces Institute, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L8, Canada
- Department of Chemistry and Chemical Biology, McMaster University , Hamilton, Ontario L8S 4L7, Canada
| | - John D Brennan
- Biointerfaces Institute, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L8, Canada
- Department of Chemistry and Chemical Biology, McMaster University , Hamilton, Ontario L8S 4L7, Canada
| | - Carlos D M Filipe
- Biointerfaces Institute, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L8, Canada
- Department of Chemical Engineering, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L7, Canada
| | - Robert H Pelton
- Biointerfaces Institute, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L8, Canada
- Department of Chemical Engineering, McMaster University , 1280 Main St W, Hamilton, Ontario L8S 4L7, Canada
| |
Collapse
|
41
|
Simon KA, Warren NJ, Mosadegh B, Mohammady MR, Whitesides GM, Armes SP. Disulfide-Based Diblock Copolymer Worm Gels: A Wholly-Synthetic Thermoreversible 3D Matrix for Sheet-Based Cultures. Biomacromolecules 2015; 16:3952-8. [DOI: 10.1021/acs.biomac.5b01266] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Karen A. Simon
- Department
of Chemistry and Chemical Biology, Harvard University, 12 Oxford
Street, Cambridge, Massachusetts 02138, United States
| | - Nicholas J. Warren
- Department
of Chemistry, University of Sheffield, Dainton Building, Brookhill Sheffield S37H, United Kingdom
| | - Bobak Mosadegh
- Department
of Chemistry and Chemical Biology, Harvard University, 12 Oxford
Street, Cambridge, Massachusetts 02138, United States
- Wyss
Institute for Biologically Inspired Engineering, Harvard University, 60 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Marym R. Mohammady
- Department
of Chemistry and Chemical Biology, Harvard University, 12 Oxford
Street, Cambridge, Massachusetts 02138, United States
- Wyss
Institute for Biologically Inspired Engineering, Harvard University, 60 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - George M. Whitesides
- Department
of Chemistry and Chemical Biology, Harvard University, 12 Oxford
Street, Cambridge, Massachusetts 02138, United States
- Wyss
Institute for Biologically Inspired Engineering, Harvard University, 60 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Steven P. Armes
- Department
of Chemistry, University of Sheffield, Dainton Building, Brookhill Sheffield S37H, United Kingdom
| |
Collapse
|
42
|
Oriented Peptide Immobilization on Microspheres. Methods Mol Biol 2015; 1352:183-97. [PMID: 26490476 DOI: 10.1007/978-1-4939-3037-1_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
Reproducible immobilization of peptides and proteins on microsphere surfaces is a critical factor for optimal sensitivity and selectivity in bead-based assays. However, peptides with unusually large numbers of lysine residues-whose amines are targeted in the most common microsphere immobilization chemistries-may be particularly challenging to use in bead-based arrays, as they may lose activity through multipoint attachments and incorrect presentation. For this reason, it is imperative to achieve site-directed attachment chemistry, such that a single site of attachment provides reproducibly oriented peptides on the microsphere surface. This can be achieved by inserting a unique targetable residue, such as a cysteine. Here, we present methods for attaching cysteine-containing peptides to standard carboxy-functionalized microsphere surfaces using thiol- rather than amine-directed chemistries. We show that the presence of a cationic detergent (CTAB) and a "passivating" agent such as β-mercaptoethanol facilitates improved bead recovery after peptide immobilization and may enhance functionality of the attached peptides.
Collapse
|
43
|
Li J, Rossignol F, Macdonald J. Inkjet printing for biosensor fabrication: combining chemistry and technology for advanced manufacturing. LAB ON A CHIP 2015; 15:2538-58. [PMID: 25953427 DOI: 10.1039/c5lc00235d] [Citation(s) in RCA: 142] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Inkjet printing is emerging at the forefront of biosensor fabrication technologies. Parallel advances in both ink chemistry and printers have led to a biosensor manufacturing approach that is simple, rapid, flexible, high resolution, low cost, efficient for mass production, and extends the capabilities of devices beyond other manufacturing technologies. Here we review for the first time the factors behind successful inkjet biosensor fabrication, including printers, inks, patterning methods, and matrix types. We discuss technical considerations that are important when moving beyond theoretical knowledge to practical implementation. We also highlight significant advances in biosensor functionality that have been realised through inkjet printing. Finally, we consider future possibilities for biosensors enabled by this novel combination of chemistry and technology.
Collapse
Affiliation(s)
- Jia Li
- Inflammation and Healing Research Cluster, Genecology Research Centre, School of Science and Engineering, University of the Sunshine Coast, Maroochydore, QLD, Australia.
| | | | | |
Collapse
|
44
|
Paper – a potential platform in pharmaceutical development. Trends Biotechnol 2015; 33:4-9. [DOI: 10.1016/j.tibtech.2014.11.004] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Revised: 11/02/2014] [Accepted: 11/07/2014] [Indexed: 01/26/2023]
|
45
|
Rajendra V, Sicard C, Brennan JD, Brook MA. Printing silicone-based hydrophobic barriers on paper for microfluidic assays using low-cost ink jet printers. Analyst 2014; 139:6361-5. [DOI: 10.1039/c4an01626b] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Inkjet printed silicone resins provide hydrophobic barriers for paper-based microfluidic assays.
Collapse
Affiliation(s)
- Vinodh Rajendra
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
| | - Clémence Sicard
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
| | - John D. Brennan
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
| | - Michael A. Brook
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton, Canada
| |
Collapse
|