1
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Soldatova NS, Radzhabov AD, Ivanov DM, Burguera S, Frontera A, Abramov PA, Postnikov PS, Kukushkin VY. Key-to-lock halogen bond-based tetragonal pyramidal association of iodonium cations with the lacune rims of beta-octamolybdate. Chem Sci 2024; 15:12459-12472. [PMID: 39118643 PMCID: PMC11304769 DOI: 10.1039/d4sc01695e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 06/16/2024] [Indexed: 08/10/2024] Open
Abstract
The structure-directing "key-to-lock" interaction of double σ-(IIII)-hole donating iodonium cations with the O-flanked pseudo-lacune rims of [β-Mo8O26]4- gives halogen-bonded iodonium-beta-octamolybate supramolecular associates. In the occurrence of their tetragonal pyramidal motifs, deep and broad σ-(IIII)-holes of a cation recognize the molybdate backbone, which provides an electronic pool localized around the two lacunae. The halogen-bonded I⋯O linkages in the structures were thoroughly studied computationally and classified as two-center, three-center bifurcated, and unconventional "orthogonal" I⋯O halogen bonds. In the latter, the O-atom approaches orthogonally the C-IIII-C plane of an iodonium cation and this geometry diverge from the IUPAC criteria for the identification of the halogen bond.
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Affiliation(s)
- Natalia S Soldatova
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University Tomsk 634050 Russian Federation
| | - Amirbek D Radzhabov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University Tomsk 634050 Russian Federation
| | - Daniil M Ivanov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University Tomsk 634050 Russian Federation
- Institute of Chemistry, Saint Petersburg State University Universitetskaya Nab. 7/9 Saint Petersburg 199034 Russian Federation
| | - Sergi Burguera
- Department of Chemistry, Universitat de les Illes Balears Crta. de Valldemossa km 7.5 Palma de Mallorca (Baleares) 07122 Spain
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears Crta. de Valldemossa km 7.5 Palma de Mallorca (Baleares) 07122 Spain
| | - Pavel A Abramov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University Tomsk 634050 Russian Federation
- Nikolaev Institute of Inorganic Chemistry SB RAS 3 Acad. Lavrentiev Av. Novosibirsk 630090 Russian Federation
| | - Pavel S Postnikov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University Tomsk 634050 Russian Federation
- Department of Solid State Engineering, University of Chemical Technology Prague 16628 Czech Republic
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University Universitetskaya Nab. 7/9 Saint Petersburg 199034 Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University Barnaul 656049 Russian Federation
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2
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Jovanovic D, Poliyodath Mohanan M, Huber SM. Halogen, Chalcogen, Pnictogen, and Tetrel Bonding in Non-Covalent Organocatalysis: An Update. Angew Chem Int Ed Engl 2024; 63:e202404823. [PMID: 38728623 DOI: 10.1002/anie.202404823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 04/24/2024] [Accepted: 04/24/2024] [Indexed: 05/12/2024]
Abstract
The use of noncovalent interactions based on electrophilic halogen, chalcogen, pnictogen, or tetrel centers in organocatalysis has gained noticeable attention. Herein, we provide an overview on the most important developments in the last years with a clear focus on experimental studies and on catalysts which act via such non-transient interactions.
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Affiliation(s)
- Dragana Jovanovic
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Meghana Poliyodath Mohanan
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Stefan M Huber
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
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3
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John EA, Riel AMS, Wieske LHE, Ray D, Decato DA, Boller M, Takacs Z, Erdélyi M, Bryantsev VS, Berryman OB. Taming Molecular Folding: Anion-Templated Foldamers with Tunable Quaternary Structures. J Am Chem Soc 2024. [PMID: 38842125 DOI: 10.1021/jacs.3c14820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
Higher-order foldamers represent a unique class of supramolecules at the forefront of molecular design. Herein we control quaternary folding using a novel approach that combines halogen bonding (XBing) and hydrogen bonding (HBing). We present the first anion-templated double helices induced by halogen bonds (XBs) and stabilized by "hydrogen bond enhanced halogen bonds" (HBeXBs). Our findings demonstrate that the number and orientation of hydrogen bond (HB) and XB donors significantly affect the quaternary structure and guest selectivity of two similar oligomers. This research offers new design elements to engineer foldamers and tailor their quaternary structure for specific guest binding.
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Affiliation(s)
- Eric A John
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Asia Marie S Riel
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Lianne H E Wieske
- Department of Chemistry─BMC, Organic Chemistry, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden
| | - Debmalya Ray
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Daniel A Decato
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Madeleine Boller
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
| | - Zoltan Takacs
- Swedish NMR Center, University of Gothenburg, Gothenburg SE-405 30, Sweden
| | - Máté Erdélyi
- Department of Chemistry─BMC, Organic Chemistry, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden
| | - Vyacheslav S Bryantsev
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Orion B Berryman
- Department of Chemistry and Biochemistry, University of Montana, Missoula, Montana 59812, United States
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4
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Il'in MV, Safinskaya YV, Polonnikov DA, Novikov AS, Bolotin DS. Chalcogen- and Halogen-Bond-Donating Cyanoborohydrides Provide Imine Hydrogenation. J Org Chem 2024; 89:2916-2925. [PMID: 38373196 DOI: 10.1021/acs.joc.3c02282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
Sulfonium, selenonium, telluronium, and iodonium cyanoborohydrides have been synthesized, isolated, and fully characterized by various methods, including single-crystal X-ray diffraction (XRD) analysis. The quantum theory of atoms in molecules' analysis based on the XRD data indicated that the hydride···σ-hole short contacts observed in the crystal structures of each compound have a purely noncovalent nature. The telluronium and iodonium cyanoborohydrides provide a significantly higher rate of the model reaction of imine hydrogenation compared with sodium and tetrabutylammonium cyanoborohydrides. Based on the NMR and high-resolution electrospray ionization mass spectrometry data indicating that the reaction progress is accompanied by the cation reduction, a mechanism involving intermediate formation of elusive onium hydrides has been proposed as an alternative to conventional electrophilic activation of the imine moiety by its ligation to the cation's σ-hole.
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Affiliation(s)
- Mikhail V Il'in
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Yana V Safinskaya
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Denis A Polonnikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
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5
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Bagha H, Hein R, Lim JYC, Durr CB, Sambrook MR, Beer PD. Halogen Bonding Tripodal Metallo-Receptors for Phosphate Recognition and Sensing in Aqueous-Containing Organic Media. Chemistry 2024; 30:e202302775. [PMID: 37792284 DOI: 10.1002/chem.202302775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 10/02/2023] [Accepted: 10/03/2023] [Indexed: 10/05/2023]
Abstract
The anion recognition and electrochemical anion-sensing properties of halogen-bonding (XB) tripodal zinc(II) receptors strategically designed and constructed for tetrahedral anion guest binding are described. The XB tris(iodotriazole)-containing hosts exhibit high affinities and selectivities for inorganic phosphate over other more basic, mono-charged oxoanions such as acetate and the halides in a competitive CD3 CN/D2 O (9 : 1 v/v) aqueous solvent mixture. 1 H NMR anion binding and electrochemical voltammetric anion sensing studies with redox-active ferrocene functionalised metallo-tripodal receptor analogues, reveal each of the XB tripods as superior anion complexants when compared to their tris(prototriazole)-containing, hydrogen bonding (HB) counterparts, not only exemplifying the halogen bond as a strong alternative interaction to the traditional hydrogen bond for molecular recognition but also providing rare evidence of the ability of XB receptors to preferentially bind the "harder" phosphate oxoanion over the "softer" and less hydrated halides in aqueous containing media.
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Affiliation(s)
- Hena Bagha
- Department of Chemistry, University of Oxford Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Robert Hein
- Department of Chemistry, University of Oxford Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Jason Y C Lim
- Department of Chemistry, University of Oxford Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Christopher B Durr
- Department of Chemistry, University of Oxford Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | | | - Paul D Beer
- Department of Chemistry, University of Oxford Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
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6
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Smirnov AS, Katlenok EA, Mikherdov AS, Kryukova MA, Bokach NA, Kukushkin VY. Halogen Bonding Involving Isomeric Isocyanide/Nitrile Groups. Int J Mol Sci 2023; 24:13324. [PMID: 37686131 PMCID: PMC10487382 DOI: 10.3390/ijms241713324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 08/24/2023] [Accepted: 08/25/2023] [Indexed: 09/10/2023] Open
Abstract
2,3,5,6-Tetramethyl-1,4-diisocyanobenzene (1), 1,4-diisocyanobenzene (2), and 1,4-dicyanobenzene (3) were co-crystallized with 1,3,5-triiodotrifluorobenzene (1,3,5-FIB) to give three cocrystals, 1·1,3,5-FIB, 2·2(1,3,5-FIB), and 3·2(1,3,5-FIB), which were studied by X-ray diffraction. A common feature of the three structures is the presence of I···Cisocyanide or I···Nnitrile halogen bonds (HaBs), which occurs between an iodine σ-hole and the isocyanide C-(or the nitrile N-) atom. The diisocyanide and dinitrile cocrystals 2·2(1,3,5-FIB) and 3·2(1,3,5-FIB) are isostructural, thus providing a basis for accurate comparison of the two types of noncovalent linkages of C≡N/N≡C groups in the composition of structurally similar entities and in one crystal environment. The bonding situation was studied by a set of theoretical methods. Diisocyanides are more nucleophilic than the dinitrile and they exhibit stronger binding to 1,3,5-FIB. In all structures, the HaBs are mostly determined by the electrostatic interactions, but the dispersion and induction components also provide a noticeable contribution and make the HaBs attractive. Charge transfer has a small contribution (<5%) to the HaB and it is higher for the diisocyanide than for the dinitrile systems. At the same time, diisocyanide and dinitrile structures exhibit typical electron-donor and π-acceptor properties in relation to the HaB donor.
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Affiliation(s)
- Andrey S. Smirnov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russia; (A.S.S.); (E.A.K.); (A.S.M.); (M.A.K.); (N.A.B.)
| | - Eugene A. Katlenok
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russia; (A.S.S.); (E.A.K.); (A.S.M.); (M.A.K.); (N.A.B.)
| | - Alexander S. Mikherdov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russia; (A.S.S.); (E.A.K.); (A.S.M.); (M.A.K.); (N.A.B.)
| | - Mariya A. Kryukova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russia; (A.S.S.); (E.A.K.); (A.S.M.); (M.A.K.); (N.A.B.)
| | - Nadezhda A. Bokach
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russia; (A.S.S.); (E.A.K.); (A.S.M.); (M.A.K.); (N.A.B.)
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russia; (A.S.S.); (E.A.K.); (A.S.M.); (M.A.K.); (N.A.B.)
- Laboratory of Crystal Engineering of Functional Materials, South Ural State University, 76, Lenin Av., 454080 Chelyabinsk, Russia
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7
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Keuper AC, Fengler K, Ostler F, Danelzik T, Piekarski DG, García Mancheño O. Fine-Tuning Substrate-Catalyst Halogen-Halogen Interactions for Boosting Enantioselectivity in Halogen-Bonding Catalysis. Angew Chem Int Ed Engl 2023; 62:e202304781. [PMID: 37228095 DOI: 10.1002/anie.202304781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 05/08/2023] [Accepted: 05/25/2023] [Indexed: 05/27/2023]
Abstract
A new approach towards highly enantioselective halogen-bonding catalysis has been developed. To circumvent the intrinsic issues of the nature of the halogen-bond (XB) and the resultant unresolved limitations in asymmetric catalysis, fine-tuned halogen-halogen interactions between the substrate and XB-donor were designed to preorganize the substrate in the catalyst's cavity and boost enantiocontrol. The present strategy exploits both the electron cloud (Lewis base site) and the sigma (σ)-hole site of the halogen substituent of the substrates to form a tight catalyst-substrate-counteranion chiral complex, thus enabling a controlled induction of high levels of chirality transfer. Remarkable enantioselectivities of up to 95 : 5 e.r. (90 % ee) have been achieved in a model dearomatization reaction of halogen-substituted (iso)quinolines with tetrakis-iodotriazole multidentate anion-binding catalysts.
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Affiliation(s)
- Alica C Keuper
- Organic Chemistry Institute, University of Münster, Correnstraße 36/40, 48149, Münster, Germany
| | - Kevin Fengler
- Organic Chemistry Institute, University of Münster, Correnstraße 36/40, 48149, Münster, Germany
| | - Florian Ostler
- Organic Chemistry Institute, University of Münster, Correnstraße 36/40, 48149, Münster, Germany
| | - Tobias Danelzik
- Organic Chemistry Institute, University of Münster, Correnstraße 36/40, 48149, Münster, Germany
| | - Dariusz G Piekarski
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Poland
| | - Olga García Mancheño
- Organic Chemistry Institute, University of Münster, Correnstraße 36/40, 48149, Münster, Germany
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8
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Li Y, Ge Y, Sun R, Yang X, Huang S, Dong H, Liu Y, Xue H, Ma X, Fu H, Chen Z. Balancing Activity and Stability in Halogen-Bonding Catalysis: Iodopyridinium-Catalyzed One-Pot Synthesis of 2,3-Dihydropyridinones. J Org Chem 2023; 88:11069-11082. [PMID: 37458502 DOI: 10.1021/acs.joc.3c01028] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
Abstract
A one-pot cascade reaction for 2,3-dihydropyridinone synthesis was accomplished with 3-fluoro-2-iodo-1-methylpyridinium triflate as the halogen bond catalyst. The desired [4+2] cycloaddition products, bearing aryl, heteroaryl, alkyl, and alicyclic substituents, were successfully furnished in 28-99% yields. Mechanistic investigations proved that a strong halogen-bonding interaction forged between the iodopyridinium catalyst and imine intermediate was essential to dynamically masking the vulnerable C-I bond on the catalyst and accelerating the following aza-Diels-Alder reaction.
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Affiliation(s)
- Yi Li
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Yicen Ge
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Rui Sun
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing 400054, China
| | - Xiao Yang
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing 400054, China
| | - Shipeng Huang
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Huajian Dong
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Yunyao Liu
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Haodan Xue
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Xiaoyan Ma
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
| | - Haiyan Fu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education College of Chemistry, Sichuan University, Chengdu, Sichuan 610064, China
| | - Zeqin Chen
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan 610059, China
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9
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Kanao E, Osaki H, Tanigawa T, Takaya H, Sano T, Adachi J, Otsuka K, Ishihama Y, Kubo T. Rational Supramolecular Strategy via Halogen Bonding for Effective Halogen Recognition in Molecular Imprinting. Anal Chem 2023. [PMID: 37230938 DOI: 10.1021/acs.analchem.3c01311] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Halogen bonding is a highly directional interaction and a potential tool in functional material design through self-assembly. Herein, we describe two fundamental supramolecular strategies to synthesize molecularly imprinted polymers (MIPs) with halogen bonding-based molecular recognition sites. In the first method, the size of the σ-hole was increased by aromatic fluorine substitution of the template molecule, enhancing the halogen bonding in the supramolecule. The second method involved sandwiching hydrogen atoms of a template molecule between iodo substituents, which suppressed competing hydrogen bonding and enabled multiple recognition patterns, improving the selectivity. The interaction mode between the functional monomer and the templates was elucidated by 1H NMR, 13C NMR, X-ray absorption spectroscopy, and computational simulation. Finally, we succeeded in the effective chromatographic separation of diiodobenzene isomers on the uniformly sized MIPs prepared by multi-step swelling and polymerization. The MIPs selectively recognized halogenated thyroid hormones via halogen bonding and could be applied to screening endocrine disruptors.
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Affiliation(s)
- Eisuke Kanao
- Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan
- National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka 567-0085, Japan
| | - Hayato Osaki
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Tetsuya Tanigawa
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Hikaru Takaya
- Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan
| | - Tomoharu Sano
- Center for Environmental Measurement and Analysis, National Institute for Environmental Studies, Onogawa 16-2, Tsukuba, Ibaraki 305-8506, Japan
| | - Jun Adachi
- Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan
- National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka 567-0085, Japan
| | - Koji Otsuka
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Yasushi Ishihama
- Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan
- National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka 567-0085, Japan
| | - Takuya Kubo
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
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10
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Chen J, Wang C, Zhao J, Liang G, Xu G, Wang GE. A Novel Strategy for Enhancing NO2 Sensitivity of New 1D Organic-Inorganic Metal Halide Hybrids. INORG CHEM COMMUN 2023. [DOI: 10.1016/j.inoche.2023.110668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2023]
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11
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Novikov AS, Bolotin DS. Xenon Derivatives as Aerogen Bond-Donating Catalysts for Organic Transformations: A Theoretical Study on the Metaphorical "Spherical Cow in a Vacuum" Provides Insights into Noncovalent Organocatalysis. J Org Chem 2023; 88:1936-1944. [PMID: 35679603 DOI: 10.1021/acs.joc.2c00680] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Computations indicate that cationic and noncharged xenon derivatives should exhibit higher catalytic activity than their iodine-based noncovalent organocatalytic congeners. Perfluorophenyl xenonium(II) is expected to demonstrate the best balance between catalytic activity and chemical stability for use in organocatalysis. Comparing its catalytic activity with that of isoelectronic perfluoroiodobenzene indicates that the high catalytic activity of cationic noncovalent organocatalysts is predominantly attributed to the electrostatic interactions with the reaction substrates, which cause the polarization of ligated species during the reaction progress. In contrast, the electron transfer and covalent contributions to the bonding between the catalyst and substrate have negligible effects. The dominant effect of electrostatic interactions results in a strong negative correlation between the calculated Gibbs free energies of activation for the modeled reactions and the highest potentials of the σ-holes on the central atoms of the catalysts. No such correlation is observed for noncharged catalysts.
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Affiliation(s)
- Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation.,Peoples' Friendship University of Russia (RUDN University), Moscow 117198, Russian Federation
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
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12
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2D conjugated microporous polyacetylenes synthesized via halogen-bond-assisted radical solid-phase polymerization for high-performance metal-ion absorbents. Nat Commun 2023; 14:171. [PMID: 36635286 PMCID: PMC9837052 DOI: 10.1038/s41467-023-35809-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Accepted: 01/03/2023] [Indexed: 01/14/2023] Open
Abstract
The paper reports the first free-radical solid-phase polymerization (SPP) of acetylenes. Acetylene monomers were co-crystalized using halogen bonding, and the obtained cocrystals were polymerized. Notably, because of the alignment of acetylene monomers in the cocrystals, the adjacent C≡C groups were close enough to undergo radical polymerization effectively, enabling the radically low-reactive acetylene monomers to generate high-molecular-weight polyacetylenes that are unattainable in solution-phase radical polymerizations. Furthermore, the SPP of a crosslinkable diacetylene monomer yielded networked two-dimensional conjugated microporous polymers (2D CMPs), where 2D porous polyacetylene nanosheets were cumulated in layer-by-layer manners. Because of the porous structures, the obtained 2D CMPs worked as highly efficient and selective adsorbents of lithium (Li+) and boronium (B3+) ions, adsorbing up to 312 mg of Li+ (31.2 wt%) and 196 mg of B3+ (19.6 wt%) per 1 g of CMP. This Li+ adsorption capacity is the highest ever record in the area of Li+ adsorption.
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13
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Robidas R, Reinhard DL, Huber SM, Legault CY. A Quantum-chemical Analysis on the Lewis Acidity of Diarylhalonium Ions. Chemphyschem 2023; 24:e202200634. [PMID: 36043491 PMCID: PMC10092059 DOI: 10.1002/cphc.202200634] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 08/30/2022] [Indexed: 01/07/2023]
Abstract
Cyclic diaryliodonium compounds like iodolium derivatives have increasingly found use as noncovalent Lewis acids in the last years. They are more stable toward nucleophilic substitution than acyclic systems and are markedly more Lewis acidic. Herein, this higher Lewis acidity is analyzed and explained via quantum-chemical calculations and energy decomposition analyses. Its key origin is the change in energy levels and hybridization of iodine's orbitals, leading to both more favorable electrostatic interaction and better charge transfer. Both of the latter seem to contribute in similar fashion, while hydrogen bonding as well as steric repulsion with the phenyl rings play at best a minor role. In comparison to iodolium, bromolium and chlorolium are less Lewis acidic the lighter the halogen, which is predominantly based on less favorable charge-transfer interactions.
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Affiliation(s)
- Raphaël Robidas
- Department of Chemistry, Université de Sherbrooke, Centre in Green Chemistry and Catalysis, J1K 2R1, Sherbrooke, Québec, Canada
| | - Dominik L Reinhard
- Fakultät für Chemie und Biochemie, Organische Chemie I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Stefan M Huber
- Fakultät für Chemie und Biochemie, Organische Chemie I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Claude Y Legault
- Department of Chemistry, Université de Sherbrooke, Centre in Green Chemistry and Catalysis, J1K 2R1, Sherbrooke, Québec, Canada
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14
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Tian Y, Yin D, Yan L. J-aggregation strategy of organic dyes for near-infrared bioimaging and fluorescent image-guided phototherapy. WILEY INTERDISCIPLINARY REVIEWS. NANOMEDICINE AND NANOBIOTECHNOLOGY 2023; 15:e1831. [PMID: 35817462 DOI: 10.1002/wnan.1831] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 05/22/2022] [Accepted: 06/09/2022] [Indexed: 01/31/2023]
Abstract
With the continuous development of organic materials for optoelectronic devices and biological applications, J-aggregation has attracted a great deal of interest in both dye chemistry and supramolecular chemistry. Except for the characteristic red-shifted absorption and emission, such ordered head-to-tail stacked structures may be accompanied by special properties such as enhanced absorption, narrowed spectral bandwidth, improved photothermal and photodynamic properties, aggregation-induced emission enhancement (AIEE) phenomenon, and so forth. These excellent properties add great potential to J-aggregates for optical imaging and phototherapy in the near-infrared (NIR) region. Despite decades of development, the challenge of rationally designing the molecular structure to adjust intermolecular forces to induce J-aggregation of organic dyes remains significant. In this review, we discuss the formation of J-aggregates in terms of intermolecular interactions and summarize some recent studies on J-aggregation dyes for NIR imaging and phototherapy, to provide a clear direction and reference for designing J-aggregates of near-infrared organic dyes to better enable biological applications. This article is categorized under: Therapeutic Approaches and Drug Discovery > Emerging Technologies Diagnostic Tools > In Vivo Nanodiagnostics and Imaging Therapeutic Approaches and Drug Discovery > Nanomedicine for Oncologic Disease.
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Affiliation(s)
- Youliang Tian
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, Division of Life Sciences and Medicine, and Department of Chemical Physics, University of Science and Technology of China, Hefei, China
| | - Dalong Yin
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, Division of Life Sciences and Medicine, and Department of Chemical Physics, University of Science and Technology of China, Hefei, China
| | - Lifeng Yan
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, Division of Life Sciences and Medicine, and Department of Chemical Physics, University of Science and Technology of China, Hefei, China
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15
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Wang YQ, Wang RJ, Li QZ, Yu ZW. Abnormalities of the Halogen Bonds in the Complexes between Y 2CTe (Y = H, F, CH 3) and XF (X = F, Cl, Br, I). Molecules 2022; 27:molecules27238523. [PMID: 36500615 PMCID: PMC9739304 DOI: 10.3390/molecules27238523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Revised: 11/26/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022] Open
Abstract
In this work, the hydrogen bonds and halogen bonds in the complexes between Y2CTe (Y = H, F, CH3) and XF (X = F, Cl, Br, I) have been studied by quantum chemical calculations. We found three interesting abnormalities regarding the interactions. Firstly, the strength of halogen bonds increases in the order of IF < BrF < ClF < F2. Secondly, the halogen bonds formed by F2 are very strong, with an interaction energy in the range between −199.8 and −233.1 kJ/mol. Thirdly, all the halogen bonds are stronger than the hydrogen bonds in the systems we examined. All these results are against the general understanding of halogen bonds. These apparent abnormal properties are reconciled with the high polarizability of the Te atom and the strong inducing effect of F on the Te atom of Y2CTe. These findings provide a new perspective on halogen bonds. Additionally, we also proposed bonding distance-based methods to compare the strength of halogen/hydrogen bonds formed between different donor atoms and the same acceptor atom.
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Affiliation(s)
- Ya-Qian Wang
- MOE Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Rui-Jing Wang
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, China
| | - Qing-Zhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, China
- Correspondence: (Q.-Z.L.); (Z.-W.Y.)
| | - Zhi-Wu Yu
- MOE Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
- Correspondence: (Q.-Z.L.); (Z.-W.Y.)
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16
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Flower-like mesoporous Fe3O4@SiO2@F/NiO composites for magnetic solid-phase extraction of imidazole fungicides in tap water, milk and green tea. Microchem J 2022. [DOI: 10.1016/j.microc.2022.108292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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17
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Luo J, Dai H, Zeng C, Wu D, Cao M. A Theoretical Study of the Halogen Bond between Heteronuclear Halogen and Benzene. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27228078. [PMID: 36432179 PMCID: PMC9692316 DOI: 10.3390/molecules27228078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 11/09/2022] [Accepted: 11/15/2022] [Indexed: 11/22/2022]
Abstract
Halogen bonds play an important role in many fields, such as biological systems, drug design and crystal engineering. In this work, the structural characteristics of the halogen bond between heteronuclear halogen XD (ClF, BrCl, IBr, ICl, BrF and IF) and benzene were studied using density functional theory. The structures of the complexes between heteronuclear halogen and benzene have Cs symmetry. The interaction energies of the complexes between heteronuclear halogen XD (ClF, BrCl, IBr, ICl, BrF and IF) and benzene range from -27.80 to -37.18 kJ/mol, increasing with the increases in the polarity between the atoms of X and D, and are proportional to the angles of a between the Z axis and the covalent bond of heteronuclear halogen. The electron density (ρ) and corresponding Laplacian (∇2ρ) values indicate that the interaction of the heteronuclear halogen and benzene is a typical long-range weak interaction similar to a hydrogen bond. Independent gradient model analysis suggests that the van der Waals is the main interaction between the complexes of heteronuclear halogen and benzene. Symmetry-adapted perturbation theory analysis suggests that the electrostatic interaction is the dominant part in the complexes of C6H6⋯ClF, C6H6⋯ICl, C6H6⋯BrF and C6H6⋯IF, and the dispersion interaction is the main part in the complexes of C6H6⋯BrCl, C6H6⋯IBr.
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18
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Docker A, Tse YC, Tay HM, Taylor AJ, Zhang Z, Beer PD. Anti‐Hofmeister Anion Selectivity via a Mechanical Bond Effect in Neutral Halogen‐Bonding [2]Rotaxanes. Angew Chem Int Ed Engl 2022; 61:e202214523. [PMID: 36264711 PMCID: PMC10100147 DOI: 10.1002/anie.202214523] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Indexed: 11/18/2022]
Abstract
Exceptionally strong halogen bonding (XB) donor-chloride interactions are exploited for the chloride anion template synthesis of neutral XB [2]rotaxane host systems which contain perfluoroaryl-functionalised axle components, including a remarkably potent novel 4,6-dinitro-1,3-bis-iodotriazole motif. Halide anion recognition properties in aqueous-organic media, determined via extensive 1 H NMR halide anion titration experiments, reveal the rotaxane host systems exhibit dramatically enhanced affinities for hydrophilic Cl- and Br- , but conversely diminished affinities for hydrophobic I- , relative to their non-interlocked axle counterparts. Crucially, this mechanical bond effect induces a binding selectivity which directly opposes Hofmeister bias. Free-energy analysis of this mechanical bond enhancement demonstrates anion recognition by neutral XB interlocked host systems as a rare and general strategy to engineer anti-Hofmeister bias anion selectivity in synthetic receptor design.
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Affiliation(s)
- Andrew Docker
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Yuen Cheong Tse
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Hui Min Tay
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Andrew J. Taylor
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Zongyao Zhang
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Paul D. Beer
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
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19
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The Distance between Minima of Electron Density and Electrostatic Potential as a Measure of Halogen Bond Strength. Molecules 2022; 27:molecules27154848. [PMID: 35956799 PMCID: PMC9369751 DOI: 10.3390/molecules27154848] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 07/21/2022] [Accepted: 07/25/2022] [Indexed: 12/12/2022] Open
Abstract
In this study, we present results of a detailed topological analysis of electron density (ED) of 145 halogen-bonded complexes formed by various fluorine-, chlorine-, bromine-, and iodine-containing compounds with trimethylphosphine oxide, Me3PO. To characterize the halogen bond (XB) strength, we used the complexation enthalpy, the interatomic distance between oxygen and halogen, as well as the typical set of electron density properties at the bond critical points calculated at B3LYP/jorge-ATZP level of theory. We show for the first time that it is possible to predict the XB strength based on the distance between the minima of ED and molecular electrostatic potential (ESP) along the XB path. The gap between ED and ESP minima exponentially depends on local electronic kinetic energy density at the bond critical point and tends to be a common limiting value for the strongest halogen bond.
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20
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Papagna R, Kutzinski D, Huber SM. Polymer‐Bound Halogen Bonding Organocatalysis. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Raffaella Papagna
- Ruhr-Universität Bochum: Ruhr-Universitat Bochum Chemie und Biochemie GERMANY
| | - Dana Kutzinski
- Ruhr-Universität Bochum: Ruhr-Universitat Bochum Chemie und Biochemie GERMANY
| | - Stefan Matthias Huber
- Ruhr-Universität Bochum Fakultät für Chemie und Biochemie NC 4/171Universitätsstraße 150 44801 Bochum GERMANY
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21
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Peluso P, Mamane V. Stereoselective Processes Based on σ-Hole Interactions. Molecules 2022; 27:molecules27144625. [PMID: 35889497 PMCID: PMC9323542 DOI: 10.3390/molecules27144625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 07/13/2022] [Accepted: 07/15/2022] [Indexed: 02/01/2023] Open
Abstract
The σ-hole interaction represents a noncovalent interaction between atoms with σ-hole(s) on their surface (such as halogens and chalcogens) and negative sites. Over the last decade, significant developments have emerged in applications where the σ-hole interaction was demonstrated to play a key role in the control over chirality. The aim of this review is to give a comprehensive overview of the current advancements in the use of σ-hole interactions in stereoselective processes, such as formation of chiral supramolecular assemblies, separation of enantiomers, enantioselective complexation and asymmetric catalysis.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede Secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy
- Correspondence: (P.P.); (V.M.)
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 Rue Blaise Pascal, 67008 Strasbourg, France
- Correspondence: (P.P.); (V.M.)
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22
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Il'in MV, Novikov AS, Bolotin DS. Sulfonium and Selenonium Salts as Noncovalent Organocatalysts for the Multicomponent Groebke-Blackburn-Bienaymé Reaction. J Org Chem 2022; 87:10199-10207. [PMID: 35858372 DOI: 10.1021/acs.joc.2c01141] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Sulfonium and selenonium salts, represented by S-aryl dibenzothiophenium and Se-aryl dibenzoselenophenium triflates, were found to exhibit remarkable catalytic activity in the model Groebke-Blackburn-Bienaymé reaction. Kinetic analysis and density functional theory (DFT) calculations indicated that their catalytic effect is induced by the ligation of the reaction substrates to the σ-holes on the S or Se atom of the cations. The experimental data indicated that although 10-fold excess of the chloride totally inhibits the catalytic activity of the sulfonium salts, the selenonium salt remains catalytically active, which can be explained by the experimentally found lower binding constant of the selenonium derivative to chloride in comparison with the sulfonium analogue. Both types of salts exhibit lower catalytic activity in the model reaction than dibenziodolium species.
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Affiliation(s)
- Mikhail V Il'in
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation.,Peoples' Friendship University of Russia (RUDN University), Miklukho-Maklaya St. 6, Moscow 117198, Russian Federation
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
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23
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Han S, Zheng Y, Sarkar J, Niino H, Chatani S, Goto A. Reversible Complexation Mediated Living Radical Polymerization (RCMP) Using Tetraalkylammonium Chloride Catalysts. Macromol Rapid Commun 2022; 43:e2200468. [DOI: 10.1002/marc.202200468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 06/22/2022] [Indexed: 11/05/2022]
Affiliation(s)
- Shuaiyuan Han
- Division of Chemistry and Biological Chemistry School of Physical and Mathematical Sciences Nanyang Technological University 21 Nanyang Link Singapore 637371 Singapore
| | - Yichao Zheng
- Division of Chemistry and Biological Chemistry School of Physical and Mathematical Sciences Nanyang Technological University 21 Nanyang Link Singapore 637371 Singapore
| | - Jit Sarkar
- Division of Chemistry and Biological Chemistry School of Physical and Mathematical Sciences Nanyang Technological University 21 Nanyang Link Singapore 637371 Singapore
| | - Hiroshi Niino
- Hiroshima R&D Center Mitsubishi Chemical Corporation 20–1 Miyuki‐cho Otake Hiroshima 739‐0693 Japan
| | - Shunsuke Chatani
- Hiroshima R&D Center Mitsubishi Chemical Corporation 20–1 Miyuki‐cho Otake Hiroshima 739‐0693 Japan
| | - Atsushi Goto
- Division of Chemistry and Biological Chemistry School of Physical and Mathematical Sciences Nanyang Technological University 21 Nanyang Link Singapore 637371 Singapore
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24
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Takagi K, Murakata H, Hasegawa T. Application of Thiourea/Halogen Bond Donor Cocatalysis in Metal-Free Cationic Polymerization of Isobutyl Vinyl Ether and Styrene Derivatives. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00281] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Koji Takagi
- Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
| | - Hiroto Murakata
- Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
| | - Tomoki Hasegawa
- Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
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25
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Zheng DN, Szell PMJ, Khiri S, Ovens JS, Bryce DL. Solid-state multinuclear magnetic resonance and X-ray crystallographic investigation of the phosphorus...iodine halogen bond in a bis(dicyclohexylphenylphosphine)(1,6-diiodoperfluorohexane) cocrystal. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2022; 78:557-563. [PMID: 35702972 DOI: 10.1107/s2052520622004322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 04/22/2022] [Indexed: 06/15/2023]
Abstract
Halogen bonding to phosphorus atoms remains uncommon, with relatively few examples reported in the literature. Here, the preparation and investigation of the cocrystal bis(dicyclohexylphenylphosphine)(1,6-diiodoperfluorohexane) by X-ray crystallography and solid-state multinuclear magnetic resonance spectroscopy is described. The crystal structure features two crystallographically unique C-I...P halogen bonds [dI...P = 3.090 (5) Å, 3.264 (5) Å] and crystallographic disorder of one of the 1,6-diiodoperfluorohexane molecules. The first of these is the shortest and most linear I...P halogen bond reported to date. 13C, 19F, and 31P magic angle spinning solid-state NMR spectra are reported. A 31P chemical shift change of -7.0 p.p.m. in the cocrystal relative to pure dicyclohexylphenylphosphine, consistent with halogen bond formation, is noted. This work establishes iodoperfluoroalkanes as viable halogen bond donors when paired with phosphorus acceptors, and also shows that dicyclohexylphenylphosphine can act as a practical halogen bond acceptor.
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Affiliation(s)
- Dan Ni Zheng
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5, Canada
| | - Patrick M J Szell
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5, Canada
| | - Safaa Khiri
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5, Canada
| | - Jeffrey S Ovens
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5, Canada
| | - David L Bryce
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5, Canada
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26
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Kreisel T, Mendel M, Queen AE, Deckers K, Hupperich D, Riegger J, Fricke C, Schoenebeck F. Modular Generation of (Iodinated) Polyarenes Using Triethylgermane as Orthogonal Masking Group. Angew Chem Int Ed Engl 2022; 61:e202201475. [PMID: 35263493 PMCID: PMC9314983 DOI: 10.1002/anie.202201475] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Indexed: 02/06/2023]
Abstract
While the modular construction of molecules from suitable building blocks is a powerful means to more rapidly generate a diversity of molecules than through customized syntheses, the further evolution of the underlying coupling methodology is key to realize widespread applications. We herein disclose a complementary modular coupling approach to the widely employed Suzuki coupling strategy of boron containing precursors, which relies on organogermane containing building blocks as key orthogonal functionality and an electrophilic (rather than nucleophilic) unmasking event paired with air‐stable PdI dimer based bond construction. This allows to significantly shorten the reaction times for the iterative coupling steps and/or to close gaps in the accessible compound space, enabling straightforward access also to iodinated compounds.
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Affiliation(s)
- Tatjana Kreisel
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Marvin Mendel
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Adele E Queen
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Kristina Deckers
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Daniel Hupperich
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Julian Riegger
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Christoph Fricke
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Franziska Schoenebeck
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
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27
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Hein R, Docker A, Davis JJ, Beer PD. Redox-Switchable Chalcogen Bonding for Anion Recognition and Sensing. J Am Chem Soc 2022; 144:8827-8836. [PMID: 35522996 PMCID: PMC9121379 DOI: 10.1021/jacs.2c02924] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Inspired by the success of its related sigma-hole congener halogen bonding (XB), chalcogen bonding (ChB) is emerging as a powerful noncovalent interaction with a plethora of applications in supramolecular chemistry and beyond. Despite its increasing importance, the judicious modulation of ChB donor strength remains a formidable challenge. Herein, we present, for the first time, the reversible and large-scale modulation of ChB potency by electrochemical redox control. This is exemplified by both the switching-ON of anion recognition via ChB oxidative activation of a novel bis(ferrocenyltellurotriazole) anion host and switching-OFF reductive ChB deactivation of anion binding potency with a telluroviologen receptor. The direct linking of the redox-active center and ChB receptor donor sites enables strong coupling, which is reflected by up to a remarkable 3 orders of magnitude modulation of anion binding strength. This is demonstrated through large voltammetric perturbations of the respective receptor ferrocene and viologen redox couples, enabling, for the first time, ChB-mediated electrochemical anion sensing. The sensors not only display significant anion-binding-induced electrochemical responses in competitive aqueous-organic solvent systems but can compete with, or even outperform similar, highly potent XB and HB sensors. These observations serve to highlight a unique (redox) tunability of ChB and pave the way for further exploration of the reversible (redox) modulation of ChB in a wide range of applications, including anion sensors as well as molecular switches and machines.
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Affiliation(s)
- Robert Hein
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
| | - Andrew Docker
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
| | - Jason J Davis
- Department of Chemistry, Physical & Theoretical Chemistry Laboratory, South Parks Road, Oxford OX1 3QZ, U.K
| | - Paul D Beer
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
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28
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Gallagher JF, Hehir N, Mocilac P, Violin C, O’Connor BF, Aubert E, Espinosa E, Guillot B, Jelsch C. Probing the Electronic Properties and Interaction Landscapes in a Series of N-(Chlorophenyl)pyridinecarboxamides. CRYSTAL GROWTH & DESIGN 2022; 22:3343-3358. [PMID: 35547941 PMCID: PMC9074230 DOI: 10.1021/acs.cgd.2c00153] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 03/29/2022] [Indexed: 06/15/2023]
Abstract
A 3 × 3 isomer grid of nine N-(chlorophenyl)pyridinecarboxamides (NxxCl) is reported with physicochemical studies and single crystal structures (Nx = pyridinoyl moiety; xCl = aminochlorobenzene ring; x = para-/meta-/ortho-), as synthesized by the reaction of the substituted p-/m-/o-pyridinecarbonyl chlorides (Nx) with p-/m-/o-aminochlorobenzenes (xCl). Several of the nine NxxCl crystal structures display structural similarities with their halogenated NxxX and methylated NxxM relatives (x = p-/m-/o-substitutions; X = F, Br; M = methyl). Indeed, five of the nine NxxCl crystal structures are isomorphous with their NxxBr analogues as the NpmCl/Br, NpoCl/Br, NmoCl/NmoBr, NopCl/Br, and NooCl/Br pairs. In the NxxCl series, the favored hydrogen bonding mode is aggregation by N-H···Npyridine interactions, though amide···amide intermolecular interactions are noted in NpoCl and NmoCl. For the NoxCl triad, intramolecular N-H···Npyridine interactions influence molecular planarity, whereas NppCl·H2O (as a monohydrate) exhibits O-H···O, N-H···O1W, and O1W-H···N interactions as the primary hydrogen bonding. Analysis of chlorine-containing compounds on the CSD is noted for comparisons. The interaction environments are probed using Hirshfeld surface analysis and contact enrichment studies. The melting temperatures (T m) depend on both the lattice energy and molecular symmetry (Carnelley's rule), and the melting points can be well predicted from a linear regression of the two variables. The relationships of the T m values with the total energy, the electrostatic component, and the strongest hydrogen bond components have been analyzed.
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Affiliation(s)
- John F. Gallagher
- School
of Chemical Sciences, Dublin City University, Dublin D09 DXA0, Ireland
| | - Niall Hehir
- School
of Chemical Sciences, Dublin City University, Dublin D09 DXA0, Ireland
| | - Pavle Mocilac
- School
of Chemical Sciences, Dublin City University, Dublin D09 DXA0, Ireland
| | - Chloé Violin
- School
of Chemical Sciences, Dublin City University, Dublin D09 DXA0, Ireland
| | | | - Emmanuel Aubert
- CRM, CNRS UMR 7036, Faculté
des Sciences et Technologies, Université
de Lorraine, BP 70239, Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
| | - Enrique Espinosa
- CRM, CNRS UMR 7036, Faculté
des Sciences et Technologies, Université
de Lorraine, BP 70239, Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
| | - Benoît Guillot
- CRM, CNRS UMR 7036, Faculté
des Sciences et Technologies, Université
de Lorraine, BP 70239, Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
| | - Christian Jelsch
- CRM, CNRS UMR 7036, Faculté
des Sciences et Technologies, Université
de Lorraine, BP 70239, Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
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29
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Kubik S. When Molecules Meet in Water-Recent Contributions of Supramolecular Chemistry to the Understanding of Molecular Recognition Processes in Water. Chemistry 2022; 11:e202200028. [PMID: 35373466 PMCID: PMC8977507 DOI: 10.1002/open.202200028] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 03/17/2022] [Indexed: 12/19/2022]
Abstract
Molecular recognition processes in water differ from those in organic solvents in that they are mediated to a much greater extent by solvent effects. The hydrophobic effect, for example, causes molecules that only weakly interact in organic solvents to stay together in water. Such water‐mediated interactions can be very efficient as demonstrated by many of the synthetic receptors discussed in this review, some of which have substrate affinities matching or even surpassing those of natural binders. However, in spite of considerable success in designing such receptors, not all factors determining their binding properties in water are fully understood. Existing concepts still provide plausible explanations why the reorganization of water molecules often causes receptor‐substrate interactions in water to be strongly exothermic rather than entropically favored as predicted by the classical view of the hydrophobic effect.
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Affiliation(s)
- Stefan Kubik
- Technische Universität Kaiserslautern, Fachbereich Chemie - Organische Chemie, Erwin-Schrödinger-Straße 54, 67663, Kaiserslautern, Germany
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30
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Kreisel T, Mendel M, Queen AE, Deckers K, Hupperich D, Riegger J, Fricke C, Schoenebeck F. Modular Generation of (Iodinated) Polyarenes Using Triethylgermane as Orthogonal Masking Group. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202201475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Tatjana Kreisel
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Marvin Mendel
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Adele E. Queen
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Kristina Deckers
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Daniel Hupperich
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Julian Riegger
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Christoph Fricke
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Franziska Schoenebeck
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
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31
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Il'in MV, Sysoeva AA, Novikov AS, Bolotin DS. Diaryliodoniums as Hybrid Hydrogen- and Halogen-Bond-Donating Organocatalysts for the Groebke-Blackburn-Bienaymé Reaction. J Org Chem 2022; 87:4569-4579. [PMID: 35176856 DOI: 10.1021/acs.joc.1c02885] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Dibenziodolium and diphenyliodonium triflates display high catalytic activity for the multicomponent reaction that leads to a series of imidazopyridines. Density functional theory (DFT) calculations indicate that both the salts can play the role of hybrid hydrogen- and halogen-bond-donating organocatalysts, which electrophilically activate the carbonyl and imine groups during the reaction process. The ortho-H atoms in the vicinal position to the I atom play a dual role: forming additional noncovalent bonds with the ligated substrate and increasing the maximum electrostatic potential on the σ-hole at the iodine atom owing to the effects of polarization. Dibenziodolium triflate exhibits higher catalytic activity, and the results obtained from 1H nuclear magnetic resonance (NMR) titrations, in conjunction with those from DFT calculations, indicate that this could be explained in terms of the additional energy required for the rotation of the phenyl ring in the diphenyliodonium cation during ligation of the substrate.
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Affiliation(s)
- Mikhail V Il'in
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Alexandra A Sysoeva
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
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32
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Aliyarova IS, Tupikina EY, Ivanov DM, Kukushkin VY. Metal-Involving Halogen Bonding Including Gold(I) as a Nucleophilic Partner. The Case of Isomorphic Dichloroaurate(I)·Halomethane Cocrystals. Inorg Chem 2022; 61:2558-2567. [DOI: 10.1021/acs.inorgchem.1c03482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Irina S. Aliyarova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Elena Yu. Tupikina
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Daniil M. Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russian Federation
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33
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Yang P, He L, Wang Y. Ultrastable Anion Catechol Frameworks (ACFs) of Pentiptycene‐based Quad(catechol) Through Decavalent Hydrogen Bond. ChemistrySelect 2022. [DOI: 10.1002/slct.202103985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Pan Yang
- Instrumental Analysis Center Shanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 PR China
- School of Chemistry and Chemical Engineering Shanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 PR China
| | - Lin He
- Instrumental Analysis Center Shanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 PR China
| | - Youfu Wang
- School of Chemistry and Chemical Engineering Shanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 PR China
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34
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Liu C, Li F, Wang J, Zhao X, Zhang T, Huang X, Wu M, Hu Z, Liu X, Li Z. Self-assembly of Supramolecular Planar Macrocycle Driven by Intermolecular Halogen Bonding. ACTA CHIMICA SINICA 2022. [DOI: 10.6023/a22080368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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35
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Morota Y, Suzuki T, Landenberger KB. Synthesis and cationic polymerization of halogen bonding vinyl ether monomers. RSC Adv 2022; 12:2641-2651. [PMID: 35425293 PMCID: PMC8979203 DOI: 10.1039/d1ra06957h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 01/12/2022] [Indexed: 11/29/2022] Open
Abstract
Halogen bonding is rapidly becoming recognized as a viable and useful intermolecular interaction in supramolecular chemistry. While various monomers amenable to radical polymerization methods containing halogen bonding donors have been developed, this study aims to expand the type of monomers that incorporate this intermolecular interaction to facilitate use of cationic polymerization by developing three novel vinyl ether monomers containing halogen bonding donor moieties: 2,3,5,6-tetrafluoro-4-iodophenoxyethyl vinyl ether (C2I), 2,3,5,6-tetrafluoro-4-iodophenoxybutyl vinyl ether (C4I), and 2-(2,3,5,6-tetrafluoro-4-iodophenoxyethoxy)ethyl vinyl ether (O3I). Well controlled cationic polymerization is achievable through the use of a proton trap, 2,6-di-tert-butylpyridine. The use of SnCl4 as a co-Lewis acid was found to accelerate the reaction. Between the three monomers, the difference in the chain length is shown to influence the reaction rate, with the longest chain demonstrating the fastest polymerization. Initial studies of the halogen bonding ability shows that halogen bonding exists for all three monomers but is most pronounced in C4I. The polymerized vinyl ethers also exhibit halogen bonding. Due to the ease of synthesis and polymerization, these are promising new monomers to increase functionality available for polymers synthesized using cationic polymerization. Three novel vinyl ether monomers containing halogen bonding moieties were synthesized, polymerized via cationic polymerization and exhibited clear halogen bonding.![]()
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Affiliation(s)
- Yudai Morota
- Department of Polymer Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo Ward, Kyoto 615-8510, Japan
| | - Takanaga Suzuki
- Department of Polymer Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo Ward, Kyoto 615-8510, Japan
| | - Kira B. Landenberger
- Department of Polymer Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo Ward, Kyoto 615-8510, Japan
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36
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Kikkawa Y, Nagasaki M, Koyama E, Ito S, Tsuzuki S. Halogen bond-directed self-assembly in bicomponent blends at the solid/liquid interface: Effect of the alkyl chain substitution position. Phys Chem Chem Phys 2022; 24:17088-17097. [DOI: 10.1039/d2cp02206k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The fabrication of well-organised molecular assemblies on surfaces is fundamental for the creation of functional molecular systems applicable to nanoelectronics and molecular devices. In this study, we investigated the effect...
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37
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Bunchuay T, Boonpalit K, Docker A, Ruengsuk A, Tantirungrotechai J, Sukwattanasinitt M, Surawatanawong P, Beer PD. Charge neutral halogen bonding tetradentate-iodotriazole macrocycles capable of anion recognition and sensing in highly competitive aqueous media. Chem Commun (Camb) 2021; 57:11976-11979. [PMID: 34708850 DOI: 10.1039/d1cc05037k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
A series of neutral tetradentate halogen bonding (XB) macrocycles, comprising of two bis-iodotriazole XB donors were synthesised in 60-70% yields via a stepwise CuAAC-mediated cyclisation strategy. Extensive 1H NMR anion titration experiments reveal halide binding affinities are critically dependent on the substitution pattern of the xylyl spacer unit. The meta-substituted macrocycle remarkably displays cooperative tetradentate XB-halide anion recognition in highly competitive 40% aqueous-organic D2O/acetone-d6 (40 : 60, v/v) solvent mixtures. Integration of para-xylyl and naphthyl spacer units generates extended macrocyclic cavities, capable of selective oxalate recognition. Furthermore, preliminary fluorescence exeperiments reveal dicarboxylate specific sensing can be achieved through monitoring of the naphthylene centred emission.
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Affiliation(s)
- Thanthapatra Bunchuay
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, 10400, Thailand.
| | - Kajjana Boonpalit
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, 10400, Thailand.
| | - Andrew Docker
- Department of Chemistry, University of Oxford Chemistry Research Laboratory Mansfield Road, Oxford OX1 3TA, UK.
| | - Araya Ruengsuk
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, 10400, Thailand.
| | - Jonggol Tantirungrotechai
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, 10400, Thailand.
| | | | - Panida Surawatanawong
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, 10400, Thailand.
| | - Paul D Beer
- Department of Chemistry, University of Oxford Chemistry Research Laboratory Mansfield Road, Oxford OX1 3TA, UK.
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38
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Zheng J, Suwardi A, Wong CJE, Loh XJ, Li Z. Halogen bonding regulated functional nanomaterials. NANOSCALE ADVANCES 2021; 3:6342-6357. [PMID: 36133496 PMCID: PMC9419782 DOI: 10.1039/d1na00485a] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 09/22/2021] [Indexed: 06/16/2023]
Abstract
Non-covalent interactions have gained increasing attention for use as a driving force to fabricate various supramolecular architectures, exhibiting great potential in crystal and materials engineering and supramolecular chemistry. As one of the most powerful non-covalent bonds, the halogen bond has recently received increasing attention in functional nanomaterial design. The present review describes the latest studies based on halogen bonding induced self-assembly and its applications. Due to the high directionality and controllable interaction strength, halogen bonding can provide a facile platform for the design and synthesis of a myriad of nanomaterials. In addition, both the fundamental aspects and the real engineering applications are discussed, which encompass molecular recognition and sensing, organocatalysis, and controllable multifunctional materials and surfaces.
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Affiliation(s)
- Jie Zheng
- Institute of Materials Research and Engineering, ASTAR (Agency for Science, Technology and Research) Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Ady Suwardi
- Institute of Materials Research and Engineering, ASTAR (Agency for Science, Technology and Research) Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Claris Jie Ee Wong
- Department of Material Science and Engineering, National University of Singapore S117576 Singapore
| | - Xian Jun Loh
- Institute of Materials Research and Engineering, ASTAR (Agency for Science, Technology and Research) Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Zibiao Li
- Institute of Materials Research and Engineering, ASTAR (Agency for Science, Technology and Research) Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
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39
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Ivanov DM, Bokach NA, Yu Kukushkin V, Frontera A. Metal Centers as Nucleophiles: Oxymoron of Halogen Bond-Involving Crystal Engineering. Chemistry 2021; 28:e202103173. [PMID: 34623005 PMCID: PMC9298210 DOI: 10.1002/chem.202103173] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Indexed: 02/06/2023]
Abstract
This review highlights recent studies discovering unconventional halogen bonding (HaB) that involves positively charged metal centers. These centers provide their filled d‐orbitals for HaB, and thus behave as nucleophilic components toward the noncovalent interaction. This role of some electron‐rich transition metal centers can be considered an oxymoron in the sense that the metal is, in most cases, formally cationic; consequently, its electron donor function is unexpected. The importance of Ha⋅⋅⋅d‐[M] (Ha=halogen; M is Group 9 (Rh, Ir), 10 (Ni, Pd, Pt), or 11 (Cu, Au)) interactions in crystal engineering is emphasized by showing remarkable examples (reported and uncovered by our processing of the Cambridge Structural Database), where this Ha⋅⋅⋅d‐[M] directional interaction guides the formation of solid supramolecular assemblies of different dimensionalities.
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Affiliation(s)
- Daniil M Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Nadezhda A Bokach
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.,Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul, 656049, Russian Federation
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Palma de Mallorca (Baleares), 07122, Spain
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40
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Exploiting non-covalent interactions in selective carbohydrate synthesis. Nat Rev Chem 2021; 5:792-815. [PMID: 37117666 DOI: 10.1038/s41570-021-00324-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/10/2021] [Indexed: 02/08/2023]
Abstract
Non-covalent interactions (NCIs) are a vital component of biological bond-forming events, and have found important applications in multiple branches of chemistry. In recent years, the biomimetic exploitation of NCIs in challenging glycosidic bond formation and glycofunctionalizations has attracted significant interest across diverse communities of organic and carbohydrate chemists. This emerging theme is a major new direction in contemporary carbohydrate chemistry, and is rapidly gaining traction as a robust strategy to tackle long-standing issues such as anomeric and site selectivity. This Review thus seeks to provide a bird's-eye view of wide-ranging advances in harnessing NCIs within the broad field of synthetic carbohydrate chemistry. These include the exploitation of NCIs in non-covalent catalysed glycosylations, in non-covalent catalysed glycofunctionalizations, in aglycone delivery, in stabilization of intermediates and transition states, in the existence of intramolecular hydrogen bonding networks and in aggregation by hydrogen bonds. In addition, recent emerging opportunities in exploiting halogen bonding and other unconventional NCIs, such as CH-π, cation-π and cation-n interactions, in various aspects of carbohydrate chemistry are also examined.
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41
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Boelke A, Kuczmera TJ, Lork E, Nachtsheim BJ. N-Heterocyclic Iod(az)olium Salts - Potent Halogen-Bond Donors in Organocatalysis. Chemistry 2021; 27:13128-13134. [PMID: 34160859 PMCID: PMC8519039 DOI: 10.1002/chem.202101961] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Indexed: 01/03/2023]
Abstract
This article describes the application of N-heterocyclic iod(az)olium salts (NHISs) as highly reactive organocatalysts. A variety of mono- and dicationic NHISs are described and utilized as potent XB-donors in halogen-bond catalysis. They were benchmarked in seven diverse test reactions in which the activation of carbon- and metal-chloride bonds as well as carbonyl and nitro groups was achieved. N-methylated dicationic NHISs rendered the highest reactivity in all investigated catalytic applications with reactivities even higher than all previously described monodentate XB-donors based on iodine(I) and (III) and the strong Lewis acid BF3 .
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Affiliation(s)
- Andreas Boelke
- Institut für Organische und Analytische ChemieUniversität BremenLeobener Straße NW2C28359BremenGermany
| | - Thomas J. Kuczmera
- Institut für Organische und Analytische ChemieUniversität BremenLeobener Straße NW2C28359BremenGermany
| | - Enno Lork
- Institut für Anorganische Chemie und KristallographieUniversität BremenLeobener Straße NW2C28359BremenGermany
| | - Boris J. Nachtsheim
- Institut für Organische und Analytische ChemieUniversität BremenLeobener Straße NW2C28359BremenGermany
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42
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Sysoeva AA, Novikov AS, Il'in MV, Suslonov VV, Bolotin DS. Predicting the catalytic activity of azolium-based halogen bond donors: an experimentally-verified theoretical study. Org Biomol Chem 2021; 19:7611-7620. [PMID: 34323914 DOI: 10.1039/d1ob01158h] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This report demonstrates the successful application of electrostatic surface potential distribution analysis for evaluating the relative catalytic activity of a series of azolium-based halogen bond donors. A strong correlation (R2 > 0.97) was observed between the positive electrostatic potential of the σ-hole on the halogen atom and the Gibbs free energy of activation of the model reactions (i.e., halogen abstraction and carbonyl activation). The predictive ability of the applied approach was confirmed experimentally. It was also determined that the catalytic activity of azolium-based halogen bond donors was generally governed by the structure of the azolium cycle, whereas the substituents on the heterocycle had a limited impact on the activity. Ultimately, this study highlighted four of the most promising azolium halogen bond donors, which are expected to exhibit high catalytic activity.
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Affiliation(s)
- Alexandra A Sysoeva
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Mikhail V Il'in
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Vitalii V Suslonov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
| | - Dmitrii S Bolotin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.
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43
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Li C, Manick AD, Yang J, Givaudan D, Biletskyi B, Michaud-Chevalier S, Dutasta JP, Hérault D, Bugaut X, Chatelet B, Martinez A. The Chloroazaphosphatrane Motif for Halogen Bonding in Solution. Inorg Chem 2021; 60:11964-11973. [PMID: 34319095 DOI: 10.1021/acs.inorgchem.1c01005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Chloroazaphosphatranes, the corresponding halogenophosphonium cations of the Verkade superbases, were evaluated as a new motif for halogen bonding (XB). Their modulable synthesis allowed for synthetizing chloroazaphosphatranes with various substituents on the nitrogen atoms. The binding constants determined from NMR titration experiments for Cl-, Br-, I-, AcO-, and CN- anions are comparable to those obtained with conventional iodine-based monodentate XB receptors. Remarkably, the protonated azaphosphatrane counterparts display no affinity for anions under the same conditions. The strength of the XB interaction is, to some extent, related to the basicity of the corresponding Verkade superbase. The halogen bonding abilities of this new class of halogen donor motif were also revealed by the Δδ(31P) NMR shift observed in CD2Cl2 solution in the presence of triethylphosphine oxide (TEPO). Thus, chloroazaphosphatranes constitute a new class of halogen bond donors, expanding the repertory of XB motifs mainly based on CAr-I bonds.
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Affiliation(s)
- Chunyang Li
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | | | - Jian Yang
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | - David Givaudan
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | - Bohdan Biletskyi
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | | | - Jean-Pierre Dutasta
- Laboratoire de Chimie, École Normale Supérieure de Lyon, CNRS, 46 allée d'Italie, F-69364 Lyon, France
| | - Damien Hérault
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | - Xavier Bugaut
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
| | - Bastien Chatelet
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Marseille, France
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44
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Li J, Kwon E, Lear MJ, Hayashi Y. Halogen Bonding of
N
‐Halosuccinimides with Amines and Effects of
Brønsted
Acids in Quinuclidine‐Catalyzed Halocyclizations. Helv Chim Acta 2021. [DOI: 10.1002/hlca.202100080] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Jing Li
- Department of Chemistry, Graduate School of Science Tohoku University Sendai 980-8578 Japan
| | - Eunsang Kwon
- Research and Analytical Center for Giant Molecules, Graduate School of Science Tohoku University Sendai 980-8578 Japan
| | - Martin J. Lear
- School of Chemistry University of Lincoln, Brayford Pool Lincoln LN6 7TS United Kingdom
| | - Yujiro Hayashi
- Department of Chemistry, Graduate School of Science Tohoku University Sendai 980-8578 Japan
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45
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Yang H, Tan CH, Wong MW. In silico characterization and prediction of thiourea-like neutral bidentate halogen bond catalysts. Org Biomol Chem 2021; 19:7051-7060. [PMID: 34341809 DOI: 10.1039/d1ob01092a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Preorganization is a common strategy to align halogen bond (XB) donors to form two or more halogen bonds simultaneously. Previous approaches have utilized various non-covalent interactions such as steric interactions, ππ stacking, and hydrogen bond interactions. However, some of the introduced aligning interactions may compete with halogen bond interactions if the donors are employed in catalysis. To achieve thiourea-like properties, we have designed in silico several neutral bidentate halogen bond donors in whose structures the donor moieties are connected via covalent bonds. Compared to previous XB catalyst designs, the new design does not involve other potentially competitive non-covalent interactions such as hydrogen bonds. One of the designed XB donors can deliver strong halogen bonds, with a O-I distance as short as 2.64 Å. Density functional theory (DFT) calculations predicted that our designed catalysts may catalyze important organic reactions on their own, particularly for those reactions that involve (developing) soft anions such as thiolates.
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Affiliation(s)
- Hui Yang
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543.
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46
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Ueyama K, Hayakawa S, Nishio K, Sawaguchi D, Niitsuma K, Michii S, Tsuruoka R, Ozawa M, Torita K, Morita Y, Komatsu T, Haraguchi R, Fukuzawa S. Halogen‐Bonding‐Donor Catalyzed Cyanosilylation of Aldehydes. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kyohei Ueyama
- Department of Applied Chemistry, Graduate School of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Shunsuke Hayakawa
- Department of Applied Chemistry, Graduate School of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Kazuhiro Nishio
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Daiki Sawaguchi
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Kenta Niitsuma
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Shota Michii
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Ryoto Tsuruoka
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Miyuki Ozawa
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Koki Torita
- Department of Applied Chemistry, Institute of Science and Engineering Chuo University 1-13-27 Kasuga, Bunkyo-ku Tokyo 112-8551 Japan
| | - Yoshitsugu Morita
- Department of Applied Chemistry, Institute of Science and Engineering Chuo University 1-13-27 Kasuga, Bunkyo-ku Tokyo 112-8551 Japan
| | - Teruyuki Komatsu
- Department of Applied Chemistry, Institute of Science and Engineering Chuo University 1-13-27 Kasuga, Bunkyo-ku Tokyo 112-8551 Japan
| | - Ryosuke Haraguchi
- Department of Applied Chemistry, Graduate School of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
- Department of Applied Chemistry, Faculty of Engineering Chiba Institute of Technology 2-17-1 Tsudanuma Narashino Chiba 275–0016 Japan
| | - Shin‐ichi Fukuzawa
- Department of Applied Chemistry, Institute of Science and Engineering Chuo University 1-13-27 Kasuga, Bunkyo-ku Tokyo 112-8551 Japan
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Robidas R, Reinhard DL, Legault CY, Huber SM. Iodine(III)-Based Halogen Bond Donors: Properties and Applications. CHEM REC 2021; 21:1912-1927. [PMID: 34145711 DOI: 10.1002/tcr.202100119] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 05/21/2021] [Indexed: 12/24/2022]
Abstract
Halogen bonding, the non-covalent interaction of Lewis bases with an electron-deficient region of halogen substituents, received increased attention recently. Consequently, the design and evaluation of numerous halogen-containing species as halogen bond donors have been subject to intense research. More recently, organoiodine compounds at the iodine(III) state have been receiving growing attention in the field. Due to their electronic and structural properties, they provide access to unique binding modes. For this reason, our groups have been involved in the development of such compounds, in the quantification of their halogen bonding strength (through the evaluation of their Lewis acidities), as well as in the evaluation of their activities as catalysts in several model reactions. This account will describe these contributions.
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Affiliation(s)
- Raphaël Robidas
- Department of Chemistry, Université de Sherbrooke, J1K 2R1, Sherbrooke, Québec, Canada
| | - Dominik L Reinhard
- Fakultät für Chemie und Biochemie, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Claude Y Legault
- Department of Chemistry, Université de Sherbrooke, J1K 2R1, Sherbrooke, Québec, Canada
| | - Stefan M Huber
- Fakultät für Chemie und Biochemie, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany
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Cai K, Zhang L, Astumian RD, Stoddart JF. Radical-pairing-induced molecular assembly and motion. Nat Rev Chem 2021; 5:447-465. [PMID: 37118435 DOI: 10.1038/s41570-021-00283-4] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/16/2021] [Indexed: 12/25/2022]
Abstract
Radical-pairing interactions between conjugated organic π-radicals are relative newcomers to the inventory of molecular recognition motifs explored in supramolecular chemistry. The unique electronic, magnetic, optical and redox-responsive properties of the conjugated π-radicals render molecules designed with radical-pairing interactions useful for applications in various areas of chemistry and materials science. In particular, the ability to control formation of radical cationic or anionic species, by redox stimulation, provides a flexible trigger for directed assembly and controlled molecular motions, as well as a convenient means of inputting energy to fuel non-equilibrium processes. In this Review, we provide an overview of different examples of radical-pairing-based recognition processes and of their emerging use in (1) supramolecular assembly, (2) templation of mechanically interlocked molecules, (3) stimuli-controlled molecular switches and, by incorporation of kinetic asymmetry in the design, (4) the creation of unidirectional molecular transporters based on pumping cassettes powered by fuelled switching of radical-pairing interactions. We conclude the discussion with an outlook on future directions for the field.
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Nishida Y, Suzuki T, Takagi Y, Amma E, Tajima R, Kuwano S, Arai T. A Hypervalent Cyclic Dibenzoiodolium Salt as a Halogen-Bond-Donor Catalyst for the [4+2] Cycloaddition of 2-Alkenylindoles. Chempluschem 2021; 86:741-744. [PMID: 33942571 DOI: 10.1002/cplu.202100089] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Revised: 04/15/2021] [Indexed: 12/11/2022]
Abstract
A stable, hypervalent cyclic dibenzoiodolium salt acted as a strong halogen bonding (XB)-donor catalyst for [4+2] cycloaddition of 2-alkenylindoles, and not as an oxidizing agent. The cross-[4+2] cycloaddition of 2-vinylindoles with 2-alkenylindoles was catalyzed smoothly by the hypervalent cyclic dibenzoiodolium triflate catalyst to give the tetrahydrocarbazoles in up to 99 % yield with 17 : 1 diastereoselectivity. The hypervalent cyclic dibenzoiodolium salt was also applicable to the Povarov reaction of 2-vinylindole with N-p-methoxyphenyl (PMP) imine to give the indolyl-tetrahydroquinoline in 83 % yield.
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Affiliation(s)
- Yuki Nishida
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
| | - Takumi Suzuki
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
| | - Yuri Takagi
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
| | - Emi Amma
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
| | - Ryoya Tajima
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
| | - Satoru Kuwano
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
| | - Takayoshi Arai
- Soft Molecular Activation Research Center (SMARC), Chiba Iodine Resource Innovation Center (CIRIC), Molecular Chirality Research Center (MCRC), Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi, Inage, Chiba, 263-8522, Japan
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Characterising Supramolecular Architectures in Crystals Featuring I⋯Br Halogen Bonding: Persistence of X⋯X’ Secondary-Bonding in Their Congeners. CRYSTALS 2021. [DOI: 10.3390/cryst11040433] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The Cambridge Structural Database was surveyed for crystals featuring I⋯Br secondary-bonding in their supramolecular assemblies occurring independently of other obvious supramolecular synthons and devoid of other halogen bonding interactions. In all, 41 crystals satisfied these criteria, with nine examples of zero-dimensional aggregation (uniformly two-molecule aggregates) and 30 one-dimensional chains of varying topology (linear, zigzag and helical). There is one example each of two- and three-dimensional patterns. Type-I, type-II and intermediate bonding situations are apparent; for type-II bonding, the ratio of iodide:bromide functioning as the electrophile is 2:1. Most molecules participated, on average, in one I⋯Br contact, although smaller numbers of half (zero-dimensional) or two contacts (two- and three-dimensional) were observed. The propensity of the formation of related halogen bonding interactions in congeners of the 41 investigated crystals was also studied. Congeners were apparent for 11 crystals, with seven of these exhibiting isostructural relationships, in terms of space-group symmetry and unit-cell parameters. Isostructural relationships do not ensure the formation of analogous aggregation patterns, particularly and in accord with expectation, for the lighter halides. When formed, often distinct aggregation patterns are observed despite the isostructural relationships. Hetero-atomic halogen bonding offers surprises and opportunities in crystal engineering endeavours.
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