1
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Jana RD, Das A, Samanta R, Banerjee S, Paul S, Paine TK. Stereoelectronic Tuning of Bioinspired Nonheme Iron(IV)-Oxo Species by Amide Groups in Primary and Secondary Coordination Spheres for Selective Oxygenation Reactions. Inorg Chem 2024; 63:21042-21058. [PMID: 39433290 DOI: 10.1021/acs.inorgchem.4c03155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2024]
Abstract
Two mononuclear iron(II) complexes, [(6-amide2-BPMEN)FeII](OTf)2 (1) and [(6-amide-Me-BPMEN)FeII(OTf)](OTf) (2), supported by two BPMEN-derived (BPMEN = N1,N2-dimethyl-N1,N2-bis(pyridine-2-yl-methyl)ethane-1,2-diamine) ligands bearing one or two amide functionalities have been isolated to study their reactivity in the oxygenation of C-H and C═C bonds using isopropyl 2-iodoxybenzoate (iPr-IBX ester) as the oxidant. Both 1 and 2 contain six-coordinate high-spin iron(II) centers in the solid state and in solution. The 6-amide2-BPMEN ligand stabilizes an S = 1 iron(IV)-oxo intermediate, [(6-amide2-BPMEN)FeIV(O)]2+ (1A). The oxidant (1A) oxygenates the C-H and C═C bonds with a high selectivity. Oxidant 1A, upon treatment with 2,6-lutidine, is transformed into another oxidant [{(6-amide2-BPMEN)-(H)}FeIV(O)]+ (1B) through deprotonation of an amide group, resulting in a stronger equatorial ligand field and subsequent stabilization of the triplet ground state. In contrast, no iron-oxo species could be observed from complex 2 and [(6-Me2-BPMEN)FeII(OTf)2] (3) under similar experimental conditions. The iron(IV)-oxo oxidant 1A shows the highest A/K selectivity in cyclohexane oxidation and 3°/2° selectivity in adamantane oxidation reported for any synthetic nonheme iron(IV)-oxo complexes. Theoretical investigation reveals that the hydrogen bonding interaction between the -NH group of the noncoordinating amide group and Fe═O core smears out the equatorial charge density, reducing the triplet-quintet splitting, and thus helping complex 1A to achieve better reactivity.
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Affiliation(s)
- Rahul Dev Jana
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Abhishek Das
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Rajib Samanta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Sridhar Banerjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Satadal Paul
- Department of Chemistry, Bangabasi Morning College, 19 Rajkumar Chakraborty Sarani, Kolkata 700009, India
| | - Tapan Kanti Paine
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
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2
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Cao Y, Wong HPH, Warwicker J, Hay S, de Visser SP. What is the Origin of the Regioselective C 3-Hydroxylation of L-Arg by the Nonheme Iron Enzyme Capreomycin C? Chemistry 2024:e202402604. [PMID: 39190221 DOI: 10.1002/chem.202402604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 08/26/2024] [Accepted: 08/27/2024] [Indexed: 08/28/2024]
Abstract
The nonheme iron dioxygenase capreomycin C (CmnC) hydroxylates a free L-arginine amino acid regio- and stereospecifically at the C3-position as part of the capreomycin antibiotics biosynthesis. Little is known on its structure, catalytic cycle and substrate specificity and, therefore, a comprehensive computational study was performed. A large QM cluster model of CmnC was created of 297 atoms and the mechanisms for C3-H, C4-H and C5-H hydroxylation and C3-C4 desaturation were investigated. All low-energy pathways correspond to radical reaction mechanisms with an initial hydrogen atom abstraction followed by OH rebound to form alcohol product complexes. The work is compared to alternative L-Arg hydroxylating nonheme iron dioxygenases and the differences in active site polarity are compared. We show that a tight hydrogen bonding network in the substrate binding pocket positions the substrate in an ideal orientation for C3-H activation, whereby the polar groups in the substrate binding pocket induce an electric field effect that guides the selectivity.
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Affiliation(s)
- Yuanxin Cao
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Henrik P H Wong
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Jim Warwicker
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- School of Biological Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Sam Hay
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Sam P de Visser
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
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3
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Cao Y, Hay S, de Visser SP. An Active Site Tyr Residue Guides the Regioselectivity of Lysine Hydroxylation by Nonheme Iron Lysine-4-hydroxylase Enzymes through Proton-Coupled Electron Transfer. J Am Chem Soc 2024; 146:11726-11739. [PMID: 38636166 PMCID: PMC11066847 DOI: 10.1021/jacs.3c14574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 04/05/2024] [Accepted: 04/05/2024] [Indexed: 04/20/2024]
Abstract
Lysine dioxygenase (KDO) is an important enzyme in human physiology involved in bioprocesses that trigger collagen cross-linking and blood pressure control. There are several KDOs in nature; however, little is known about the factors that govern the regio- and stereoselectivity of these enzymes. To understand how KDOs can selectively hydroxylate their substrate, we did a comprehensive computational study into the mechanisms and features of 4-lysine dioxygenase. In particular, we selected a snapshot from the MD simulation on KDO5 and created large QM cluster models (A, B, and C) containing 297, 312, and 407 atoms, respectively. The largest model predicts regioselectivity that matches experimental observation with rate-determining hydrogen atom abstraction from the C4-H position, followed by fast OH rebound to form 4-hydroxylysine products. The calculations show that in model C, the dipole moment is positioned along the C4-H bond of the substrate and, therefore, the electrostatic and electric field perturbations of the protein assist the enzyme in creating C4-H hydroxylation selectivity. Furthermore, an active site Tyr233 residue is identified that reacts through proton-coupled electron transfer akin to the axial Trp residue in cytochrome c peroxidase. Thus, upon formation of the iron(IV)-oxo species in the catalytic cycle, the Tyr233 phenol loses a proton to the nearby Asp179 residue, while at the same time, an electron is transferred to the iron to create an iron(III)-oxo active species. This charged tyrosyl residue directs the dipole moment along the C4-H bond of the substrate and guides the selectivity to the C4-hydroxylation of the substrate.
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Affiliation(s)
- Yuanxin Cao
- Manchester
Institute of Biotechnology, The University
of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department
of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Sam Hay
- Manchester
Institute of Biotechnology, The University
of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department
of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Sam P. de Visser
- Manchester
Institute of Biotechnology, The University
of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department
of Chemical Engineering, The University
of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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4
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Hardy FG, Wong HPH, de Visser SP. Computational Study Into the Oxidative Ring-Closure Mechanism During the Biosynthesis of Deoxypodophyllotoxin. Chemistry 2024; 30:e202400019. [PMID: 38323740 DOI: 10.1002/chem.202400019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 02/01/2024] [Accepted: 02/07/2024] [Indexed: 02/08/2024]
Abstract
The nonheme iron dioxygenase deoxypodophyllotoxin synthase performs an oxidative ring-closure reaction as part of natural product synthesis in plants. How the enzyme enables the oxidative ring-closure reaction of (-)-yatein and avoids substrate hydroxylation remains unknown. To gain insight into the reaction mechanism and understand the details of the pathways leading to products and by-products we performed a comprehensive computational study. The work shows that substrate is bound tightly into the substrate binding pocket with the C7'-H bond closest to the iron(IV)-oxo species. The reaction proceeds through a radical mechanism starting with hydrogen atom abstraction from the C7'-H position followed by ring-closure and a final hydrogen transfer to form iron(II)-water and deoxypodophyllotoxin. Alternative mechanisms including substrate hydroxylation and an electron transfer pathway were explored but found to be higher in energy. The mechanism is guided by electrostatic perturbations of charged residues in the second-coordination sphere that prevent alternative pathways.
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Affiliation(s)
- Fintan G Hardy
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Henrik P H Wong
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
| | - Sam P de Visser
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom
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Satpathy JK, Yadav R, Bagha UK, Kumar D, Sastri CV, de Visser SP. Enhanced Reactivity through Equatorial Sulfur Coordination in Nonheme Iron(IV)-Oxo Complexes: Insights from Experiment and Theory. Inorg Chem 2024; 63:6752-6766. [PMID: 38551622 DOI: 10.1021/acs.inorgchem.4c00070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
Sulfur ligation in metalloenzymes often gives the active site unique properties, whether it is the axial cysteinate ligand in the cytochrome P450s or the equatorial sulfur/thiol ligation in nonheme iron enzymes. To understand sulfur ligation to iron complexes and how it affects the structural, spectroscopic, and intrinsic properties of the active species and the catalysis of substrates, we pursued a systematic study and compared sulfur with amine-ligated iron(IV)-oxo complexes. We synthesized and characterized a biomimetic N4S-ligated iron(IV)-oxo complex and compared the obtained results with an analogous N5-ligated iron(IV)-oxo complex. Our work shows that the amine for sulfur replacement in the equatorial ligand framework leads to a rate enhancement for oxygen atom and hydrogen atom transfer reactions. Moreover, the sulfur-ligated iron(IV)-oxo complex reacts through a different reaction mechanism as compared to the N5-ligated iron(IV)-oxo complex, where the former reacts through hydride transfer with the latter reacting via radical pathways. We show that the reactivity differences are caused by a dramatic change in redox potential between the two complexes. Our studies highlight the importance of implementing a sulfur ligand into the equatorial ligand framework of nonheme iron(IV)-oxo complexes and how it affects the physicochemical properties of the oxidant and its reactivity.
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Affiliation(s)
- Jagnyesh K Satpathy
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, Assam, India
| | - Rolly Yadav
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, Assam, India
| | - Umesh K Bagha
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, Assam, India
| | - Devesh Kumar
- Department of Applied Physics, Babasaheb Bhimrao Ambedkar University, School for Physical Sciences, Vidya Vihar, Rae Bareilly Road, Lucknow 226025, UP, India
| | - Chivukula V Sastri
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, Assam, India
| | - Sam P de Visser
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, Assam, India
- The Manchester Institute of Biotechnology and Department of Chemical Engineering, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
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6
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Mukherjee G, Velmurugan G, Kerscher M, Kumar Satpathy J, Sastri CV, Comba P. Mechanistic Insights into Amphoteric Reactivity of an Iron-Bispidine Complex. Chemistry 2024; 30:e202303127. [PMID: 37942658 DOI: 10.1002/chem.202303127] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 11/08/2023] [Accepted: 11/09/2023] [Indexed: 11/10/2023]
Abstract
The reactivity of FeIII -alkylperoxido complexes has remained a riddle to inorganic chemists owing to their thermal instability and impotency towards organic substrates. These iron-oxygen adducts have been known as sluggish oxidants towards oxidative electrophilic and nucleophilic reactions. Herein, we report the synthesis and spectroscopic characterization of a relatively stable mononuclear high-spin FeIII -alkylperoxido complex supported by an engineered bispidine framework. Against the notion, this FeIII -alkylperoxido complex serves as a rare example of versatile reactivity in both electrophilic and nucleophilic reactions. Detailed mechanistic studies and computational calculations reveal a novel reaction mechanism, where a putative superoxido intermediate orchestrates the amphoteric property of the oxidant. The design of the backbone is pivotal to convey stability and reactivity to alkylperoxido and superoxido intermediates. Contrary to the well-known O-O bond cleavage that generates an FeIV -oxido species, the FeIII -alkylperoxido complex reported here undergoes O-C bond scission to generate a superoxido moiety that is responsible for the amphiphilic reactivity.
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Affiliation(s)
- Gourab Mukherjee
- Department of Catalysis & Fine Chemicals, CSIR-Indian Institute of Chemical Technology Tarnaka, Hyderabad, 500007, India
| | - Gunasekaran Velmurugan
- Anorganisch-Chemisches Institut and, Interdisciplinary Center for Scientific Computing (IWR), Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany)
| | - Marion Kerscher
- Anorganisch-Chemisches Institut and, Interdisciplinary Center for Scientific Computing (IWR), Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany)
| | - Jagnyesh Kumar Satpathy
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam, 781039, India
| | - Chivukula V Sastri
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam, 781039, India
| | - Peter Comba
- Anorganisch-Chemisches Institut and, Interdisciplinary Center for Scientific Computing (IWR), Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany)
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7
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Castillo CE, Gonzálvez MA, Algarra AG, Fernández-Trujillo MJ, Ferrer M, Martínez M, Basallote MG. Fe(II) complexes of pyridine-substituted thiosemicarbazone ligands as catalysts for oxidations with hydrogen peroxide. Dalton Trans 2023; 52:14606-14612. [PMID: 37786386 DOI: 10.1039/d3dt02442c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
The reaction of three [FeII(TSC)2] complexes, where TSC is a pyridine-substituted thiosemicarbazone of the HDpT or HBpT families, with H2O2 in acetonitrile solution does not result in the accumulation of the corresponding [FeIII(TSC)2]+ complexes. Instead, a mixture of diamagnetic low-spin FeII species is generated. According to the MS spectra, those species result from the sequential addition of up to five oxygen atoms to the complex. This capability for the addition of oxygen atoms suggested that oxygen atom transfer to external substrates may be possible, and these TSC complexes were tested in the oxidation of thioanisole and styrene with H2O2. As hypothesized, the complexes are active in both the oxidation of thioanisole to its sulfoxide and styrene to benzaldehyde, with time scales indicating the participation of the species containing added oxygen atoms. Interestingly, the free thiosemicarbazone ligands and the [Zn(Dp44mT)2] complex also catalyse the selective sulfoxidation of thioanisole, but they are ineffective in catalysing styrene oxidation to benzaldehyde. These findings open up new directions for the development of thiosemicarbazone-based metal catalysts for oxidation processes.
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Affiliation(s)
- Carmen E Castillo
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Apartado 40, E-11510 Puerto Real, Cádiz, Spain.
| | - Miguel A Gonzálvez
- Departament de Química Inorgànica i Orgànica, Secció de Química Inorgànica, Universitat de Barcelona, Martí i Franquès 1-11, E-08028 Barcelona, Spain.
| | - Andrés G Algarra
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Apartado 40, E-11510 Puerto Real, Cádiz, Spain.
| | - M Jesús Fernández-Trujillo
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Apartado 40, E-11510 Puerto Real, Cádiz, Spain.
| | - Montserrat Ferrer
- Departament de Química Inorgànica i Orgànica, Secció de Química Inorgànica, Universitat de Barcelona, Martí i Franquès 1-11, E-08028 Barcelona, Spain.
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona, 08028 Barcelona, Spain
| | - Manuel Martínez
- Departament de Química Inorgànica i Orgànica, Secció de Química Inorgànica, Universitat de Barcelona, Martí i Franquès 1-11, E-08028 Barcelona, Spain.
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona, 08028 Barcelona, Spain
| | - Manuel G Basallote
- Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Instituto de Biomoléculas (INBIO), Universidad de Cádiz, Apartado 40, E-11510 Puerto Real, Cádiz, Spain.
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8
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Li M, Li H, Ling C, Shang H, Wang H, Zhao S, Liang C, Mao C, Guo F, Zhou B, Ai Z, Zhang L. Highly selective synthesis of surface Fe IV=O with nanoscale zero-valent iron and chlorite for efficient oxygen transfer reactions. Proc Natl Acad Sci U S A 2023; 120:e2304562120. [PMID: 37695890 PMCID: PMC10515137 DOI: 10.1073/pnas.2304562120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 08/05/2023] [Indexed: 09/13/2023] Open
Abstract
High-valent iron-oxo species (FeIV=O) has been a long-sought-after oxygen transfer reagent in biological and catalytic chemistry but suffers from a giant challenge in its gentle and selective synthesis. Herein, we propose a new strategy to synthesize surface FeIV=O (≡FeIV=O) on nanoscale zero-valent iron (nZVI) using chlorite (ClO2-) as the oxidant, which possesses an impressive ≡FeIV=O selectivity of 99%. ≡FeIV=O can be energetically formed from the ferrous (FeII) sites on nZVI through heterolytic Cl-O bond dissociation of ClO2- via a synergistic effect between electron-donating surface ≡FeII and proximal electron-withdrawing H2O, where H2O serves as a hydrogen-bond donor to the terminal O atom of the adsorbed ClO2- thereby prompting the polarization and cleavage of Cl-O bond for the oxidation of ≡FeII toward the final formation of ≡FeIV=O. With methyl phenyl sulfoxide (PMS16O) as the probe molecule, the isotopic labeling experiment manifests an exclusive 18O transfer from Cl18O2- to PMS16O18O mediated by ≡FeIV=18O. We then showcase the versatility of ≡FeIV=O as the oxygen transfer reagent in activating the C-H bond of methane for methanol production and facilitating selective triphenylphosphine oxide synthesis with triphenylphosphine. We believe that this new ≡FeIV=O synthesis strategy possesses great potential to drive oxygen transfer for efficient high-value-added chemical synthesis.
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Affiliation(s)
- Meiqi Li
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Hao Li
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai200240, China
| | - Cancan Ling
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai200240, China
| | - Huan Shang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Hui Wang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Shengxi Zhao
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Chuan Liang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Chengliang Mao
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Furong Guo
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Biao Zhou
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Zhihui Ai
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
| | - Lizhi Zhang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Institute of Environmental & Applied Chemistry, Central China Normal University, Wuhan430079, China
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai200240, China
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9
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Zhan H, Zhou R, Wang P, Zhou Q. Selective hydroxyl generation for efficient pollutant degradation by electronic structure modulation at Fe sites. Proc Natl Acad Sci U S A 2023; 120:e2305378120. [PMID: 37339221 PMCID: PMC10293856 DOI: 10.1073/pnas.2305378120] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 05/09/2023] [Indexed: 06/22/2023] Open
Abstract
Hydrogen peroxide (H2O2) is an important green oxidant in the field of sewage treatment, and how to improve its activation efficiency and generate free radicals with stronger oxidation performance is a key issue in current research. Herein, we synthesized a Cu-doped α-Fe2O3 catalyst (7% Cu-Fe2O3) for activation of H2O2 under visible light for degradation of organic pollutants. The introduction of a Cu dopant changed the d-band center of Fe closer to the Fermi level, which enhanced the adsorption and activation of the Fe site for H2O2, and the cleavage pathway of H2O2 changed from heterolytic cleavage to homolytic cleavage, thereby improving the selectivity of •OH generation. In addition, Cu doping also promoted the light absorption ability of α-Fe2O3 and the separation of hole-electron pairs, which enhanced its photocatalytic activities. Benefiting from the high selectivity of •OH, 7% Cu-Fe2O3 exhibited efficient degradation activities against ciprofloxacin, the degradation rate was 3.6 times as much as that of α-Fe2O3, and it had good degradation efficiency for a variety of organic pollutants.
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Affiliation(s)
- Haiyin Zhan
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Carbon Neutrality Interdisciplinary Science Centre/College of Environmental Science and Engineering, Nankai University, Tianjin300350, China
| | - Ruiren Zhou
- Department of Biological and Agricultural Engineering, Texas A&M University, College Station, TX77843-2117
| | - Pengfei Wang
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Carbon Neutrality Interdisciplinary Science Centre/College of Environmental Science and Engineering, Nankai University, Tianjin300350, China
- School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin300401, China
| | - Qixing Zhou
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Carbon Neutrality Interdisciplinary Science Centre/College of Environmental Science and Engineering, Nankai University, Tianjin300350, China
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10
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Cheng C, Ren W, Miao F, Chen X, Chen X, Zhang H. Generation of Fe IV =O and its Contribution to Fenton-Like Reactions on a Single-Atom Iron-N-C Catalyst. Angew Chem Int Ed Engl 2023; 62:e202218510. [PMID: 36625681 DOI: 10.1002/anie.202218510] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 01/06/2023] [Accepted: 01/10/2023] [Indexed: 01/11/2023]
Abstract
Generating FeIV =O on single-atom catalysts by Fenton-like reaction has been established for water treatment; however, the FeIV =O generation pathway and oxidation behavior remain obscure. Employing an Fe-N-C catalyst with a typical Fe-N4 moiety to activate peroxymonosulfate (PMS), we demonstrate that generating FeIV =O is mediated by an Fe-N-C-PMS* complex-a well-recognized nonradical species for induction of electron-transfer oxidation-and we determined that adjacent Fe sites with a specific Fe1 -Fe1 distance are required. After the Fe atoms with an Fe1 -Fe1 distance <4 Å are PMS-saturated, Fe-N-C-PMS* formed on Fe sites with an Fe1 -Fe1 distance of 4-5 Å can coordinate with the adjacent FeII -N4 , forming an inter-complex with enhanced charge transfer to produce FeIV =O. FeIV =O enables the Fenton-like system to efficiently oxidize various pollutants in a substrate-specific, pH-tolerant, and sustainable manner, where its prominent contribution manifests for pollutants with higher one-electron oxidation potential.
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Affiliation(s)
- Cheng Cheng
- Department of Environmental Science and Engineering, School of Resource and Environmental Sciences, Wuhan University, Wuhan, 430079, China
| | - Wei Ren
- Key Laboratory of Jiangxi Province for Persistent Pollutants Control and Resource Recycle, Nanchang Hangkong University, Nanchang, 330063, China
| | - Fei Miao
- Department of Environmental Science and Engineering, School of Resource and Environmental Sciences, Wuhan University, Wuhan, 430079, China
| | - Xuantong Chen
- Department of Environmental Science and Engineering, School of Resource and Environmental Sciences, Wuhan University, Wuhan, 430079, China
| | - Xiaoxiao Chen
- Department of Environmental Science and Engineering, School of Resource and Environmental Sciences, Wuhan University, Wuhan, 430079, China
| | - Hui Zhang
- Department of Environmental Science and Engineering, School of Resource and Environmental Sciences, Wuhan University, Wuhan, 430079, China
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11
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Mokkawes T, de Visser SP. Melatonin Activation by Cytochrome P450 Isozymes: How Does CYP1A2 Compare to CYP1A1? Int J Mol Sci 2023; 24:3651. [PMID: 36835057 PMCID: PMC9959256 DOI: 10.3390/ijms24043651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 02/09/2023] [Accepted: 02/09/2023] [Indexed: 02/16/2023] Open
Abstract
Cytochrome P450 enzymes are versatile enzymes found in most biosystems that catalyze mono-oxygenation reactions as a means of biosynthesis and biodegradation steps. In the liver, they metabolize xenobiotics, but there are a range of isozymes with differences in three-dimensional structure and protein chain. Consequently, the various P450 isozymes react with substrates differently and give varying product distributions. To understand how melatonin is activated by the P450s in the liver, we did a thorough molecular dynamics and quantum mechanics study on cytochrome P450 1A2 activation of melatonin forming 6-hydroxymelatonin and N-acetylserotonin products through aromatic hydroxylation and O-demethylation pathways, respectively. We started from crystal structure coordinates and docked substrate into the model, and obtained ten strong binding conformations with the substrate in the active site. Subsequently, for each of the ten substrate orientations, long (up to 1 μs) molecular dynamics simulations were run. We then analyzed the orientations of the substrate with respect to the heme for all snapshots. Interestingly, the shortest distance does not correspond to the group that is expected to be activated. However, the substrate positioning gives insight into the protein residues it interacts with. Thereafter, quantum chemical cluster models were created and the substrate hydroxylation pathways calculated with density functional theory. These relative barrier heights confirm the experimental product distributions and highlight why certain products are obtained. We make a detailed comparison with previous results on CYP1A1 and identify their reactivity differences with melatonin.
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Affiliation(s)
- Thirakorn Mokkawes
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Sam P. de Visser
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK
- Department of Chemical Engineering, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
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12
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Aoun P, Nyssen N, Richard S, Zhurkin F, Jabin I, Colasson B, Reinaud O. Selective Metal-ion Complexation of a Biomimetic Calix[6]arene Funnel Cavity Functionalized with Phenol or Quinone. Chemistry 2023; 29:e202202934. [PMID: 36321640 PMCID: PMC10107959 DOI: 10.1002/chem.202202934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Indexed: 11/06/2022]
Abstract
In the biomimetic context, many studies have evidenced the importance of the 1st and 2nd coordination sphere of a metal ion for controlling its properties. Here, we propose to evaluate a yet poorly explored aspect, which is the nature of the cavity that surrounds the metal labile site. Three calix[6]arene-based aza-ligands are compared, that differ only by the nature of cavity walls, anisole, phenol or quinone (LOMe , LOH and LQ ). Monitoring ligand exchange of their ZnII complexes evidenced important differences in the metal ion relative affinities for nitriles, halides or carboxylates. It also showed a possible sharp kinetic control on both, metal ion binding and ligand exchange. Hence, this study supports the observations reported on biological systems, highlighting that the substitution of an amino-acid residue of the enzyme active site, at remote distance of the metal ion, can have strong impacts on metal ion lability, substrate/product exchange or selectivity.
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Affiliation(s)
- Pamela Aoun
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Nicolas Nyssen
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France.,Laboratoire de Chimie Organique, Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP160/06, B 1050, Brussels, Belgium
| | - Sarah Richard
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Fedor Zhurkin
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Ivan Jabin
- Laboratoire de Chimie Organique, Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP160/06, B 1050, Brussels, Belgium
| | - Benoit Colasson
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
| | - Olivia Reinaud
- Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, CNRS UMR 8601 Université Paris Cité, 45 Rue des Saints Pères, 75006, Paris, France
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13
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Hu S, Guo R, Gao Y, Chen F. Oxoiron(IV)-dominated Heterogeneous Fenton-like Mechanism of Fe-Doped MoS 2. Chem Asian J 2023; 18:e202201134. [PMID: 36459407 DOI: 10.1002/asia.202201134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 12/01/2022] [Accepted: 12/01/2022] [Indexed: 12/04/2022]
Abstract
Oxoiron(IV) species are a critical intermediate in the Fe-based Fenton-like process at circumneutral pH, and its oxidative reactivity is closely related to the ligands. An optional inorganic host material, MoS2 , is selected to construct a highly reactive sulfur ligand coordinated Fe species in this work. The Fe species doped in MoS2 is presented as the FeII centre and triggers the transformation of the 2H phase to the octahedral 1T phase MoS2 . The role of the interaction between doped Fe and the MoS2 host lattice on the formation of oxoiron(IV) is studied. A significant Fenton-like reactivity and a remarkable accumulation of oxoiron(IV) species were observed for Fe-MoS2 . The quenching experiment was implemented to disclose the predominant role of oxoiron(IV) species in the Fe-MoS2 /H2 O2 Fenton-like system. Furthermore, oxoiron(IV) species could transform into the ⋅O2 - and 1 O2 , which further expedites the Fenton-like reaction.
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Affiliation(s)
- Shiyu Hu
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, 200237, Shanghai, P. R. China
| | - Rujia Guo
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, 200237, Shanghai, P. R. China
| | - Yiqian Gao
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, 200237, Shanghai, P. R. China
| | - Feng Chen
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, 200237, Shanghai, P. R. China
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14
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Sulfur ligated oxoiron(IV) centre in fenton-like reaction: Theoretical postulation and experimental verification. CATAL COMMUN 2022. [DOI: 10.1016/j.catcom.2022.106536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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15
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Bohn A, Sénéchal‐David K, Rebilly J, Herrero C, Leibl W, Anxolabéhère‐Mallart E, Banse F. Heterolytic O-O Bond Cleavage Upon Single Electron Transfer to a Nonheme Fe(III)-OOH Complex. Chemistry 2022; 28:e202201600. [PMID: 35735122 PMCID: PMC9804275 DOI: 10.1002/chem.202201600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Indexed: 01/05/2023]
Abstract
The one-electron reduction of the nonheme iron(III)-hydroperoxo complex, [FeIII (OOH)(L5 2 )]2+ (L5 2 =N-methyl-N,N',N'-tris(2-pyridylmethyl)ethane-1,2-diamine), carried out at -70 °C results in the release of dioxygen and in the formation of [FeII (OH)(L5 2 )]+ following a bimolecular process. This reaction can be performed either with cobaltocene as chemical reductant, or electrochemically. These experimental observations are consistent with the disproportionation of the hydroperoxo group in the putative FeII (OOH) intermediate generated upon reduction of the FeIII (OOH) starting complex. One plausible mechanistic scenario is that this disproportionation reaction follows an O-O heterolytic cleavage pathway via a FeIV -oxo species.
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Affiliation(s)
- Antoine Bohn
- Institut de Chimie Moléculaire et des Matériaux d'OrsayUniversité Paris-SaclayCNRS91405OrsayFrance
| | - Katell Sénéchal‐David
- Institut de Chimie Moléculaire et des Matériaux d'OrsayUniversité Paris-SaclayCNRS91405OrsayFrance
| | - Jean‐Noël Rebilly
- Institut de Chimie Moléculaire et des Matériaux d'OrsayUniversité Paris-SaclayCNRS91405OrsayFrance
| | - Christian Herrero
- Institut de Chimie Moléculaire et des Matériaux d'OrsayUniversité Paris-SaclayCNRS91405OrsayFrance
| | - Winfried Leibl
- Institute for Integrative Biology of the Cell (I2BC)Université Paris-Saclay, CEACNRS91198Gif-sur-YvetteFrance
| | | | - Frédéric Banse
- Institut de Chimie Moléculaire et des Matériaux d'OrsayUniversité Paris-SaclayCNRS91405OrsayFrance
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16
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Wang B, Zhang X, Fang W, Rovira C, Shaik S. How Do Metalloproteins Tame the Fenton Reaction and Utilize •OH Radicals in Constructive Manners? Acc Chem Res 2022; 55:2280-2290. [PMID: 35926175 DOI: 10.1021/acs.accounts.2c00304] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
This Account describes the manner whereby nature controls the Fenton-type reaction of O-O homolysis of hydrogen peroxide and harnesses it to carry out various useful oxidative transformations in metalloenzymes. H2O2 acts as the cosubstrate for the heme-dependent peroxidases, P450BM3, P450SPα, P450BSβ, and the P450 decarboxylase OleT, as well as the nonheme enzymes HppE and the copper-dependent lytic polysaccharide monooxygenases (LPMOs). Whereas heme peroxidases use the Poulos-Kraut heterolytic mechanism for H2O2 activation, some heme enzymes prefer the alternative Fenton-type mechanism, which produces •OH radical intermediates. The fate of the •OH radical is controlled by the protein environment, using tight H-bonding networks around H2O2. The so-generated •OH radical is constrained by the surrounding H-bonding interactions, the orientation of which is targeted to perform H-abstraction from the Fe(III)-OH group and thereby leading to the formation of the active species, called Compound I (Cpd I), Por+•Fe(IV)═O, which performs oxidation of the substrate. Alternatively, for the nonheme HppE enzyme, the O-O homolysis catalyzed by the resting state Fe(II) generates an Fe(III)-OH species that effectively constrains the •OH radical species by a tight H-bonding network. The so-formed H-bonded •OH radical acts directly as the oxidant, since it is oriented to perform H-abstraction from the C-H bond of the substrate (S)-2-HPP. The Fenton-type H2O2 activation is strongly suggested by computations to occur also in copper-dependent LPMOs and pMMO. In LPMOs, the Cu(I)-catalyzed O-O homolysis of the H2O2 cosubstrate generates an •OH radical that abstracts a hydrogen atom from Cu(II)-OH and forms thereby the active species of the enzyme, Cu(II)-O•. Such Fenton-type O-O activation can be shared by both the O2-dependent activations of LPMOs and pMMOs, in which the O2 cosubstrate may be reduced to H2O2 by external reductants. Our studies show that, generally, the H2O2 activation is highly dependent on the protein environment, as well as on the presence/absence of substrates. Since H2O2 is a highly flexible and hydrophilic molecule, the absence of suitable substrates may lead to unproductive binding or even to the release of H2O2 from the active site, as has been suggested in P450cam and LPMOs, whereas the presence of the substrate seems to play a role in steering a Fenton-type H2O2 activation. In the absence of a substrate, the hydrophilic active site of P450BM3 disfavors the binding and activation of H2O2 and protects thereby the enzyme from the damage by the Fenton reaction. Due to the distinct coordination and reaction environment, the Fenton-type H2O2 activation mechanism by enzymes differs from the reaction in synthetic systems. In nonenzymatic reactions, the H-bonding networks are quite dynamic and flexible and the reactivity of H2O2 is not strategically constrained as in the enzymatic environment. As such, our Account describes the controlled Fenton-type mechanism in metalloenzymes, and the role of the protein environment in constraining the •OH radical against oxidative damage, while directing it to perform useful oxidative transformations.
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Affiliation(s)
- Binju Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China
| | - Xuan Zhang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China
| | - Wenhan Fang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China
| | - Carme Rovira
- Departament de Química Inorgànica i Orgànica & IQTCUB, Universitat de Barcelona, 08028 Barcelona, Spain.,Institució Catalana de Recerca i Estudis Avançats (ICREA), 08020 Barcelona, Spain
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, Givat Ram Campus, 91904 Jerusalem, Israel
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17
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Du D, Su Y, Shang Q, Chen C, Tang W, Zhang L, Ren H, Liu W. Biomimetic synthesis of L-DOPA inspired by tyrosine hydroxylase. J Inorg Biochem 2022; 234:111878. [DOI: 10.1016/j.jinorgbio.2022.111878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 04/24/2022] [Accepted: 05/24/2022] [Indexed: 10/18/2022]
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18
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Abstract
This tutorial review showcases recent (2015-2021) work describing ligand construction as it relates to the design of secondary coordination spheres (SCSs). Metalloenzymes, for example, utilize SCSs to stabilize reactive substrates, shuttle small molecules, and alter redox properties, promoting functional activity. In the realm of biomimetic chemistry, specific incorporation of SCS residues (e.g., Brønsted or Lewis acid/bases, crown ethers, redox groups etc.) has been shown to be equally critical to function. This contribution illustrates how fundamental advances in organic and inorganic chemistry have been used for the construction of such SCSs. These imaginative contributions have driven exciting findings in many transformations relevant to clean fuel generation, including small molecule (e.g., H+, N2, CO2, NOx, O2) reduction. In most cases, these reactions occur cooperatively, where both metal and ligand are requisite for substrate activation.
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Affiliation(s)
- Marcus W Drover
- Department of Chemistry and Biochemistry, The University of Windsor, 401 Sunset Avenue, Windsor, ON, N9B 3P4, Canada.
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19
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Vicens L, Olivo G, Costas M. Remote Amino Acid Recognition Enables Effective Hydrogen Peroxide Activation at a Manganese Oxidation Catalyst. Angew Chem Int Ed Engl 2022; 61:e202114932. [PMID: 34854188 PMCID: PMC9304166 DOI: 10.1002/anie.202114932] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Indexed: 12/14/2022]
Abstract
Precise delivery of a proton plays a key role in O2 activation at iron oxygenases, enabling the crucial O-O cleavage step that generates the oxidizing high-valent metal-oxo species. Such a proton is delivered by acidic residues that may either directly bind the iron center or lie in its second coordination sphere. Herein, a supramolecular strategy for enzyme-like H2 O2 activation at a biologically inspired manganese catalyst, with a nearly stoichiometric amount (1-1.5 equiv) of a carboxylic acid is disclosed. Key for this strategy is the incorporation of an α,ω-amino acid in the second coordination sphere of a chiral catalyst via remote ammonium-crown ether recognition. The properly positioned carboxylic acid function enables effective activation of hydrogen peroxide, leading to catalytic asymmetric epoxidation. Modulation of both amino acid and catalyst structure can tune the efficiency and the enantioselectivity of the reaction, and a study on the oxidative degradation pathway of the system is presented.
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Affiliation(s)
- Laia Vicens
- Institut de Química Computacional i Catàlisi (IQCC)Departament de QuímicaUniversitat de GironaCampus Montilivi17071Girona, CataloniaSpain
| | - Giorgio Olivo
- Institut de Química Computacional i Catàlisi (IQCC)Departament de QuímicaUniversitat de GironaCampus Montilivi17071Girona, CataloniaSpain
- Dipartamento di ChimicaUniversità “La Sapienza” di RomaPiazzale Aldo Moro 500185RomeItaly
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC)Departament de QuímicaUniversitat de GironaCampus Montilivi17071Girona, CataloniaSpain
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20
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Vicens L, Olivo G, Costas M. Remote Amino Acid Recognition Enables Effective Hydrogen Peroxide Activation at a Manganese Oxidation Catalyst. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202114932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Laia Vicens
- Institut de Química Computacional i Catàlisi (IQCC) Departament de Química Universitat de Girona Campus Montilivi 17071 Girona, Catalonia Spain
| | - Giorgio Olivo
- Institut de Química Computacional i Catàlisi (IQCC) Departament de Química Universitat de Girona Campus Montilivi 17071 Girona, Catalonia Spain
- Dipartamento di Chimica Università “La Sapienza” di Roma Piazzale Aldo Moro 5 00185 Rome Italy
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC) Departament de Química Universitat de Girona Campus Montilivi 17071 Girona, Catalonia Spain
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21
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Cao X, Song H, Li XX, Zhao Y, Qiao Q, Wang Y. Which is the real oxidant in the competitive ligand self-hydroxylation and substrate oxidation, a biomimetic iron(II)-hydroperoxo species or an oxo-iron(IV)-hydroxy one? Dalton Trans 2022; 51:7571-7580. [DOI: 10.1039/d2dt00797e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nonheme iron(II)-hydroperoxo species (FeII-(η2-OOH)) 1 and the concomitant oxo-iron(IV)-hydroxyl one 2 are proposed as the key intermediates of a large class of 2-oxoglutarate dependent dioxygenases (e.g., isopenicillin N synthase). Extensive...
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22
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Başar İA, Çoban Ö, Göksungur MY, Eskicioğlu Ç, Perendeci NA. Enhancement of lignocellulosic biomass anaerobic digestion by optimized mild alkaline hydrogen peroxide pretreatment for biorefinery applications. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 298:113539. [PMID: 34426215 DOI: 10.1016/j.jenvman.2021.113539] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 07/14/2021] [Accepted: 08/10/2021] [Indexed: 06/13/2023]
Abstract
Lignocellulosic energy crops are promising feedstocks for producing renewable fuels, such as methane, that can replace diminishing fossil fuels. However, there is a major handicap in using lignocellulosic sources to produce biofuels, which is their low biodegradability. In this study, the application and the optimization of a lignocellulose pretreatment process, named alkaline hydrogen peroxide, was investigated for the enhancement of methane production from the energy crop switchgrass. Four independent process variables, solid content (3-7%), reaction temperature (50-100 °C), H2O2 concentration (1-3%), and reaction time (6-24 h), and three response variables, soluble reducing sugar, soluble chemical oxygen demand, and biochemical methane potential were used in process optimization and modeling. The optimization was performed by two different approaches as maximum methane production and cost minimization. The optimum conditions for the highest methane production were found as 6.65 wt% solid content, 50.6 °C reaction temperature, 2.94 wt% H2O2 concentration, and 16.05 h reaction time. The conditions providing the lowest cost were 6.43 wt% solid content, 50 °C reaction temperature, 1.83 wt% H2O2 concentration, and 6.78 h reaction time. For maximum methane production and cost minimization, specific methane yields of 338.52 mL CH4/g VS and 291.34 mL CH4/g VS were predicted with 62.4 % and 39.8 % enhancements compared to untreated switchgrass, respectively. Finally, it was found that the predicted methane production for the maximum methane production represents 77 % of the theoretical methane yield and 82.22 % energy recovery.
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Affiliation(s)
- İbrahim Alper Başar
- Department of Environmental Engineering, Akdeniz University, Antalya, Turkey; UBC Bioreactor Technology Group, School of Engineering, University of British Columbia Okanagan Campus, BC, Kelowna, Canada
| | - Özge Çoban
- Department of Environmental Engineering, Akdeniz University, Antalya, Turkey
| | | | - Çiğdem Eskicioğlu
- UBC Bioreactor Technology Group, School of Engineering, University of British Columbia Okanagan Campus, BC, Kelowna, Canada
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23
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Opalade AA, Parham JD, Day VW, Jackson TA. Characterization and chemical reactivity of room-temperature-stable Mn III-alkylperoxo complexes. Chem Sci 2021; 12:12564-12575. [PMID: 34703542 PMCID: PMC8494025 DOI: 10.1039/d1sc01976g] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 08/20/2021] [Indexed: 12/30/2022] Open
Abstract
While alkylperoxomanganese(iii) (MnIII-OOR) intermediates are proposed in the catalytic cycles of several manganese-dependent enzymes, their characterization has proven to be a challenge due to their inherent thermal instability. Fundamental understanding of the structural and electronic properties of these important intermediates is limited to a series of complexes with thiolate-containing N4S- ligands. These well-characterized complexes are metastable yet unreactive in the direct oxidation of organic substrates. Because the stability and reactivity of MnIII-OOR complexes are likely to be highly dependent on their local coordination environment, we have generated two new MnIII-OOR complexes using a new amide-containing N5 - ligand. Using the 2-(bis((6-methylpyridin-2-yl)methyl)amino)-N-(quinolin-8-yl)acetamide (H6Medpaq) ligand, we generated the [MnIII(OO t Bu)(6Medpaq)]OTf and [MnIII(OOCm)(6Medpaq)]OTf complexes through reaction of their MnII or MnIII precursors with t BuOOH and CmOOH, respectively. Both of the new MnIII-OOR complexes are stable at room-temperature (t 1/2 = 5 and 8 days, respectively, at 298 K in CH3CN) and capable of reacting directly with phosphine substrates. The stability of these MnIII-OOR adducts render them amenable for detailed characterization, including by X-ray crystallography for [MnIII(OOCm)(6Medpaq)]OTf. Thermal decomposition studies support a decay pathway of the MnIII-OOR complexes by O-O bond homolysis. In contrast, direct reaction of [MnIII(OOCm)(6Medpaq)]+ with PPh3 provided evidence of heterolytic cleavage of the O-O bond. These studies reveal that both the stability and chemical reactivity of MnIII-OOR complexes can be tuned by the local coordination sphere.
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Affiliation(s)
- Adedamola A Opalade
- The University of Kansas, Department of Chemistry, Center for Environmentally Beneficial Catalysis 1567 Irving Hill Road Lawrence KS 66045 USA +1-785-864-3968
| | - Joshua D Parham
- The University of Kansas, Department of Chemistry, Center for Environmentally Beneficial Catalysis 1567 Irving Hill Road Lawrence KS 66045 USA +1-785-864-3968
| | - Victor W Day
- The University of Kansas, Department of Chemistry, Center for Environmentally Beneficial Catalysis 1567 Irving Hill Road Lawrence KS 66045 USA +1-785-864-3968
| | - Timothy A Jackson
- The University of Kansas, Department of Chemistry, Center for Environmentally Beneficial Catalysis 1567 Irving Hill Road Lawrence KS 66045 USA +1-785-864-3968
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24
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Latifi R, Palluccio TD, Ye W, Minnick JL, Glinton KS, Rybak-Akimova EV, de Visser SP, Tahsini L. pH Changes That Induce an Axial Ligand Effect on Nonheme Iron(IV) Oxo Complexes with an Appended Aminopropyl Functionality. Inorg Chem 2021; 60:13821-13832. [PMID: 34291939 DOI: 10.1021/acs.inorgchem.1c01312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nonheme iron enzymes often utilize a high-valent iron(IV) oxo species for the biosynthesis of natural products, but their high reactivity often precludes structural and functional studies of these complexes. In this work, a combined experimental and computational study is presented on a biomimetic nonheme iron(IV) oxo complex bearing an aminopyridine macrocyclic ligand and its reactivity toward olefin epoxidation upon changes in the identity and coordination ability of the axial ligand. Herein, we show a dramatic effect of the pH on the oxygen-atom-transfer (OAT) reaction with substrates. In particular, these changes have occurred because of protonation of the axial-bound pendant amine group, where its coordination to iron is replaced by a solvent molecule or anionic ligand. This axial ligand effect influences the catalysis, and we observe enhanced cyclooctene epoxidation yields and turnover numbers in the presence of the unbound protonated pendant amine group. Density functional theory studies were performed to support the experiments and highlight that replacement of the pendant amine with a neutral or anionic ligand dramatically lowers the rate-determining barriers of cyclooctene epoxidation. The computational work further establishes that the change in OAT is due to electrostatic interactions of the pendant amine cation that favorably affect the barrier heights.
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Affiliation(s)
- Reza Latifi
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - Taryn D Palluccio
- Department of Chemistry, Tufts University, Medford, Massachusetts 02155, United States
| | - Wanhua Ye
- Department of Chemistry, Tufts University, Medford, Massachusetts 02155, United States
| | - Jennifer L Minnick
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - Kwame S Glinton
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - Elena V Rybak-Akimova
- Department of Chemistry, Tufts University, Medford, Massachusetts 02155, United States
| | - Sam P de Visser
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science, The University of Manchester, Manchester M1 7DN, United Kingdom
| | - Laleh Tahsini
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
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25
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Mukherjee G, Satpathy JK, Bagha UK, Mubarak MQE, Sastri CV, de Visser SP. Inspiration from Nature: Influence of Engineered Ligand Scaffolds and Auxiliary Factors on the Reactivity of Biomimetic Oxidants. ACS Catal 2021. [DOI: 10.1021/acscatal.1c01993] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Gourab Mukherjee
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - Jagnyesh K. Satpathy
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - Umesh K. Bagha
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - M. Qadri E. Mubarak
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Fakulti Sains dan Teknologi, Universiti Sains Islam Malaysia, Bandar Baru Nilai, 71800 Nilai, Negeri Sembilan Malaysia
| | - Chivukula V. Sastri
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - Sam P. de Visser
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department of Chemical Engineering and Analytical Science, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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26
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Ali HS, Henchman RH, Visser SP. Mechanism of Oxidative Ring‐Closure as Part of the Hygromycin Biosynthesis Step by a Nonheme Iron Dioxygenase. ChemCatChem 2021. [DOI: 10.1002/cctc.202100393] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Hafiz Saqib Ali
- Manchester Institute of Biotechnology The University of Manchester 131 Princess Street Manchester M1 7DN UK
- Department of Chemistry The University of Manchester Oxford Road Manchester M13 9PL UK
| | - Richard H. Henchman
- Manchester Institute of Biotechnology The University of Manchester 131 Princess Street Manchester M1 7DN UK
- Department of Chemistry The University of Manchester Oxford Road Manchester M13 9PL UK
| | - Sam P. Visser
- Manchester Institute of Biotechnology The University of Manchester 131 Princess Street Manchester M1 7DN UK
- Department of Chemical Engineering and Analytical Science The University of Manchester Oxford Road Manchester M13 9PL UK
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27
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Beckmann F, Kass D, Keck M, Yelin S, Hoof S, Cula B, Herwig C, Krause KB, Ar D, Limberg C. High‐spin square planar iron(II) alkali metal siloxide complexes – influence of the alkali metal and reactivity towards O
2
and NO. Z Anorg Allg Chem 2021. [DOI: 10.1002/zaac.202100059] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Fabian Beckmann
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Dustin Kass
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Matthias Keck
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Stefan Yelin
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Santina Hoof
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Beatrice Cula
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Christian Herwig
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Konstantin B. Krause
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Deniz Ar
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Christian Limberg
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Germany
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28
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Xing Y, Yao Z, Li W, Wu W, Lu X, Tian J, Li Z, Hu H, Wu M. Fe/Fe
3
C Boosts H
2
O
2
Utilization for Methane Conversion Overwhelming O
2
Generation. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202016888] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yicheng Xing
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Zheng Yao
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Wenyuan Li
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Wenting Wu
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Xiaoqing Lu
- College of Materials Science and Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Jun Tian
- State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science Fudan University Shanghai 200433 P. R. China
| | - Zhongtao Li
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Han Hu
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Mingbo Wu
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
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29
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Xing Y, Yao Z, Li W, Wu W, Lu X, Tian J, Li Z, Hu H, Wu M. Fe/Fe
3
C Boosts H
2
O
2
Utilization for Methane Conversion Overwhelming O
2
Generation. Angew Chem Int Ed Engl 2021; 60:8889-8895. [DOI: 10.1002/anie.202016888] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 01/21/2021] [Indexed: 12/11/2022]
Affiliation(s)
- Yicheng Xing
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Zheng Yao
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Wenyuan Li
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Wenting Wu
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Xiaoqing Lu
- College of Materials Science and Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Jun Tian
- State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science Fudan University Shanghai 200433 P. R. China
| | - Zhongtao Li
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Han Hu
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
| | - Mingbo Wu
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy College of Chemical Engineering China University of Petroleum (East China) Qingdao 266580 P. R. China
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30
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Wegeberg C, Skavenborg ML, Liberato A, McPherson JN, Browne WR, Hedegård ED, McKenzie CJ. Engineering the Oxidative Potency of Non-Heme Iron(IV) Oxo Complexes in Water for C-H Oxidation by a cis Donor and Variation of the Second Coordination Sphere. Inorg Chem 2021; 60:1975-1984. [PMID: 33470794 DOI: 10.1021/acs.inorgchem.0c03441] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
A series of iron(IV) oxo complexes, which differ in the donor (CH2py or CH2COO-) cis to the oxo group, three with hemilabile pendant donor/second coordination sphere base/acid arms (pyH/py or ROH), have been prepared in water at pH 2 and 7. The νFe═O values of 832 ± 2 cm-1 indicate similar FeIV═O bond strengths; however, different reactivities toward C-H substrates in water are observed. HAT occurs at rates that differ by 1 order of magnitude with nonclassical KIEs (kH/kD = 30-66) consistent with hydrogen atom tunneling. Higher KIEs correlate with faster reaction rates as well as a greater thermodynamic stability of the iron(III) resting states. A doubling in rate from pH 7 to pH 2 for substrate C-H oxidation by the most potent complex, that with a cis-carboxylate donor, [FeIVO(Htpena)]2+, is observed. Supramolecular assistance by the first and second coordination spheres in activating the substrate is proposed. The lifetime of this complex in the absence of a C-H substrate is the shortest (at pH 2, 3 h vs up to 1.3 days for the most stable complex), implying that slow water oxidation is a competing background reaction. The iron(IV)═O complex bearing an alcohol moiety in the second coordination sphere displays significantly shorter lifetimes due to a competing selective intramolecular oxidation of the ligand.
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Affiliation(s)
- Christina Wegeberg
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.,Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Mathias L Skavenborg
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.,Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, New South Wales, Australia
| | - Andrea Liberato
- Universidad de Cádiz, Facultad de Ciencias, Departamento de Ciencia de los Materiales e Ingeniería Metalúrgica y Química Inorgánica, Puerto Real, Cádiz 11510, Spain
| | - James N McPherson
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Wesley R Browne
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Erik D Hedegård
- Division of Theoretical Chemistry, Lund University, Naturvetarvägen 14, 221 00 Lund, Sweden
| | - Christine J McKenzie
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
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31
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Wade J, Brandt JR, Reger D, Zinna F, Amsharov KY, Jux N, Andrews DL, Fuchter MJ. 500-Fold Amplification of Small Molecule Circularly Polarised Luminescence through Circularly Polarised FRET. Angew Chem Int Ed Engl 2021; 60:222-227. [PMID: 33030274 PMCID: PMC7839560 DOI: 10.1002/anie.202011745] [Citation(s) in RCA: 86] [Impact Index Per Article: 28.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Indexed: 11/15/2022]
Abstract
Strongly dissymmetric circularly polarised (CP) luminescence from small organic molecules could transform a range of technologies, such as display devices. However, highly dissymmetric emission is usually not possible with small organic molecules, which typically give dissymmetric factors of photoluminescence (gPL ) less than 10-2 . Here we describe an almost 103 -fold chiroptical amplification of a π-extended superhelicene when embedded in an achiral conjugated polymer matrix. This combination increases the |gPL | of the superhelicene from approximately 3×10-4 in solution to 0.15 in a blend film in the solid-state. We propose that the amplification arises not simply through a chiral environment effect, but instead due to electrodynamic coupling between the electric and magnetic transition dipoles of the polymer donor and superhelicene acceptor, and subsequent CP Förster resonance energy transfer. We show that this amplification effect holds across several achiral polymer hosts and thus represents a simple and versatile approach to enhance the g-factors of small organic molecules.
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Affiliation(s)
- Jessica Wade
- Department of Chemistry and Molecular Sciences Research HubImperial College LondonWhite City Campus, 82 Wood LaneLondonW12 0BZUK
- Institute for Molecular Science and Engineering and Centre for Processable ElectronicsImperial College LondonSouth Kensington CampusLondonSW7 2AZUK
| | - Jochen R. Brandt
- Department of Chemistry and Molecular Sciences Research HubImperial College LondonWhite City Campus, 82 Wood LaneLondonW12 0BZUK
- Institute for Molecular Science and Engineering and Centre for Processable ElectronicsImperial College LondonSouth Kensington CampusLondonSW7 2AZUK
| | - David Reger
- Department Chemie und Pharmazie & Interdisciplinary Center for Molecular Materials (ICMM)Friedrich-Alexander-Universität Erlangen-NürnbergNikolaus-Fiebiger-Strasse 1091058ErlangenGermany
| | - Francesco Zinna
- Dipartimento di Chimica e Chimica IndustrialeUniversità di PisaVia Moruzzi 1356124PisaItaly
| | - Konstantin Y. Amsharov
- Institute for Organic ChemistryMartin-Luther-Universität Halle-WittenbergKurt-Mothes-Straße 206120HalleGermany
| | - Norbert Jux
- Department Chemie und Pharmazie & Interdisciplinary Center for Molecular Materials (ICMM)Friedrich-Alexander-Universität Erlangen-NürnbergNikolaus-Fiebiger-Strasse 1091058ErlangenGermany
| | | | - Matthew J. Fuchter
- Department of Chemistry and Molecular Sciences Research HubImperial College LondonWhite City Campus, 82 Wood LaneLondonW12 0BZUK
- Institute for Molecular Science and Engineering and Centre for Processable ElectronicsImperial College LondonSouth Kensington CampusLondonSW7 2AZUK
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32
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Ali HS, Henchman RH, de Visser SP. Lignin Biodegradation by a Cytochrome P450 Enzyme: A Computational Study into Syringol Activation by GcoA. Chemistry 2020; 26:13093-13102. [PMID: 32613677 PMCID: PMC7590115 DOI: 10.1002/chem.202002203] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Indexed: 12/12/2022]
Abstract
A recently characterized cytochrome P450 isozyme GcoA activates lignin components through a selective O-demethylation or alternatively an acetal formation reaction. These are important reactions in biotechnology and, because lignin is readily available; it being the main component in plant cell walls. In this work we present a density functional theory study on a large active site model of GcoA to investigate syringol activation by an iron(IV)-oxo heme cation radical oxidant (Compound I) leading to hemiacetal and acetal products. Several substrate-binding positions were tested and full energy landscapes calculated. The study shows that substrate positioning determines the product distributions. Thus, with the phenol group pointing away from the heme, an O-demethylation is predicted, whereas an initial hydrogen-atom abstraction of the weak phenolic O-H group would trigger a pathway leading to ring-closure to form acetal products. Predictions on how to engineer P450 GcoA to get more selective product distributions are given.
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Affiliation(s)
- Hafiz Saqib Ali
- Manchester Institute of BiotechnologyThe University of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
- Department of ChemistryThe University of ManchesterOxford RoadManchesterM13 9PLUnited Kingdom
| | - Richard H. Henchman
- Manchester Institute of BiotechnologyThe University of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
- Department of ChemistryThe University of ManchesterOxford RoadManchesterM13 9PLUnited Kingdom
| | - Sam P. de Visser
- Manchester Institute of BiotechnologyThe University of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
- Department of Chemical Engineering and Analytical ScienceThe University of ManchesterOxford RoadManchesterM13 9PLUnited Kingdom
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33
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Yeh CG, Hörner G, Visser SP. Computational Study on O–O Bond Formation on a Mononuclear Non‐Heme Iron Center. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000321] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Chieh‐Chih George Yeh
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science The University of Manchester 131 Princess Street M1 7DN Manchester UK
| | - Gerald Hörner
- Institut für Anorganische Chemie IV / NW I Universität Bayreuth Universitätsstraße 30 95440 Bayreuth Germany
| | - Sam P. Visser
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science The University of Manchester 131 Princess Street M1 7DN Manchester UK
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34
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Bioengineering of Cytochrome P450 OleT JE: How Does Substrate Positioning Affect the Product Distributions? Molecules 2020; 25:molecules25112675. [PMID: 32526971 PMCID: PMC7321372 DOI: 10.3390/molecules25112675] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 05/29/2020] [Accepted: 06/04/2020] [Indexed: 02/04/2023] Open
Abstract
The cytochromes P450 are versatile enzymes found in all forms of life. Most P450s use dioxygen on a heme center to activate substrates, but one class of P450s utilizes hydrogen peroxide instead. Within the class of P450 peroxygenases, the P450 OleTJE isozyme binds fatty acid substrates and converts them into a range of products through the α-hydroxylation, β-hydroxylation and decarboxylation of the substrate. The latter produces hydrocarbon products and hence can be used as biofuels. The origin of these product distributions is unclear, and, as such, we decided to investigate substrate positioning in the active site and find out what the effect is on the chemoselectivity of the reaction. In this work we present a detailed computational study on the wild-type and engineered structures of P450 OleTJE using a combination of density functional theory and quantum mechanics/molecular mechanics methods. We initially explore the wild-type structure with a variety of methods and models and show that various substrate activation transition states are close in energy and hence small perturbations as through the protein may affect product distributions. We then engineered the protein by generating an in silico model of the double mutant Asn242Arg/Arg245Asn that moves the position of an active site Arg residue in the substrate-binding pocket that is known to form a salt-bridge with the substrate. The substrate activation by the iron(IV)-oxo heme cation radical species (Compound I) was again studied using quantum mechanics/molecular mechanics (QM/MM) methods. Dramatic differences in reactivity patterns, barrier heights and structure are seen, which shows the importance of correct substrate positioning in the protein and the effect of the second-coordination sphere on the selectivity and activity of enzymes.
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35
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Hüppe HM, Keisers K, Fink F, Mürtz SD, Hoffmann A, Iffland L, Apfel U, Herres‐Pawlis S. Catalytically Active Iron(IV)oxo Species Based on a Bis(pyridinyl)phenanthrolinylmethane. Isr J Chem 2020. [DOI: 10.1002/ijch.202000009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Henrika M. Hüppe
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Kristina Keisers
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Fabian Fink
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Sonja D. Mürtz
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Alexander Hoffmann
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
| | - Linda Iffland
- Inorganic Chemistry I Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Ulf‐Peter Apfel
- Inorganic Chemistry I Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany
- Fraunhofer UMSICHT Osterfelder Straße 3 46047 Oberhausen Germany
| | - Sonja Herres‐Pawlis
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1a 52074 Aachen Germany
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36
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Kal S, Xu S, Que L. Bio-inspired Nonheme Iron Oxidation Catalysis: Involvement of Oxoiron(V) Oxidants in Cleaving Strong C-H Bonds. Angew Chem Int Ed Engl 2020; 59:7332-7349. [PMID: 31373120 DOI: 10.1002/anie.201906551] [Citation(s) in RCA: 88] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Indexed: 11/11/2022]
Abstract
Nonheme iron enzymes generate powerful and versatile oxidants that perform a wide range of oxidation reactions, including the functionalization of inert C-H bonds, which is a major challenge for chemists. The oxidative abilities of these enzymes have inspired bioinorganic chemists to design synthetic models to mimic their ability to perform some of the most difficult oxidation reactions and study the mechanisms of such transformations. Iron-oxygen intermediates like iron(III)-hydroperoxo and high-valent iron-oxo species have been trapped and identified in investigations of these bio-inspired catalytic systems, with the latter proposed to be the active oxidant for most of these systems. In this Review, we highlight the recent spectroscopic and mechanistic advances that have shed light on the various pathways that can be accessed by bio-inspired nonheme iron systems to form the high-valent iron-oxo intermediates.
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Affiliation(s)
- Subhasree Kal
- Department of Chemistry, University of Minnesota, Twin Cities, 207 Pleasant Street SE, Minneapolis, MN, 55455, USA
| | - Shuangning Xu
- Department of Chemistry, University of Minnesota, Twin Cities, 207 Pleasant Street SE, Minneapolis, MN, 55455, USA
| | - Lawrence Que
- Department of Chemistry, University of Minnesota, Twin Cities, 207 Pleasant Street SE, Minneapolis, MN, 55455, USA
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37
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Kal S, Xu S, Que L. Bioinspirierte Nicht‐Häm‐Eisenoxidationskatalyse: Beteiligung von Oxoeisen(V)‐Oxidantien an der Spaltung starker C‐H‐Bindungen. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201906551] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Subhasree Kal
- Department of Chemistry University of Minnesota, Twin Cities 207 Pleasant Street SE Minneapolis MN 55455 USA
| | - Shuangning Xu
- Department of Chemistry University of Minnesota, Twin Cities 207 Pleasant Street SE Minneapolis MN 55455 USA
| | - Lawrence Que
- Department of Chemistry University of Minnesota, Twin Cities 207 Pleasant Street SE Minneapolis MN 55455 USA
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38
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Mubarak MQE, Visser SP. Computational Study on the Catalytic Reaction Mechanism of Heme Haloperoxidase Enzymes. Isr J Chem 2019. [DOI: 10.1002/ijch.201900099] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- M. Qadri E. Mubarak
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science The University of Manchester 131 Princess Street Manchester M1 7DN United Kingdom
| | - Sam P. Visser
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science The University of Manchester 131 Princess Street Manchester M1 7DN United Kingdom
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39
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Lin Y, Stańczak A, Manchev Y, Straganz GD, Visser SP. Can a Mononuclear Iron(III)‐Superoxo Active Site Catalyze the Decarboxylation of Dodecanoic Acid in UndA to Produce Biofuels? Chemistry 2019; 26:2233-2242. [DOI: 10.1002/chem.201903783] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 09/24/2019] [Indexed: 12/22/2022]
Affiliation(s)
- Yen‐Ting Lin
- The Manchester Institute of Biotechnology and Department of, Chemical Engineering and Analytical ScienceThe University of, Manchester 131 Princess Street Manchester M1 7DN UK
| | - Agnieszka Stańczak
- The Manchester Institute of Biotechnology and Department of, Chemical Engineering and Analytical ScienceThe University of, Manchester 131 Princess Street Manchester M1 7DN UK
- Faculty of ChemistrySilesian University of Technology ks. Marcina Strzody 9 44-100 Gliwice Poland
- Tunneling Group, Biotechnology CentreSilesian University of Technology ul. Krzywoustego 8 44–100 Gliwice Poland
| | - Yulian Manchev
- The Manchester Institute of Biotechnology and Department of, Chemical Engineering and Analytical ScienceThe University of, Manchester 131 Princess Street Manchester M1 7DN UK
| | - Grit D. Straganz
- Graz University of TechnologyInstitute of Biochemistry Petergasse 12 8010 Graz Austria
| | - Sam P. Visser
- The Manchester Institute of Biotechnology and Department of, Chemical Engineering and Analytical ScienceThe University of, Manchester 131 Princess Street Manchester M1 7DN UK
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40
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Properties and reactivity of μ-nitrido-bridged dimetal porphyrinoid complexes: how does ruthenium compare to iron? J Biol Inorg Chem 2019; 24:1127-1134. [PMID: 31560098 DOI: 10.1007/s00775-019-01725-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 09/19/2019] [Indexed: 12/23/2022]
Abstract
Methane hydroxylation by metal-oxo oxidants is one of the Holy Grails in biomimetic and biotechnological chemistry. The only enzymes known to perform this reaction in Nature are iron-containing soluble methane monooxygenase and copper-containing particulate methane monooxygenase. Furthermore, few biomimetic iron-containing oxidants have been designed that can hydroxylate methane efficiently. Recent studies reported that μ-nitrido-bridged diiron(IV)-oxo porphyrin and phthalocyanine complexes hydroxylate methane to methanol efficiently. To find out whether the reaction rates are enhanced by replacing iron by ruthenium, we performed a detailed computational study. Our work shows that the μ-nitrido-bridged diruthenium(IV)-oxo reacts with methane via hydrogen atom abstraction barriers that are considerably lower in energy (by about 5 kcal mol‒1) as compared to the analogous diiron(IV)-oxo complex. An analysis of the electronic structure implicates similar spin and charge distributions for the diiron(IV)-oxo and diruthenium(IV)-oxo complexes, but the strength of the O‒H bond formed during the reaction is much stronger for the latter. As such a larger hydrogen atom abstraction driving force for the Ru complex than for the Fe complex is found, which should result in higher reactivity in the oxidation of methane.
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41
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Ghosh I, Banerjee S, Paul S, Corona T, Paine TK. Highly Selective and Catalytic Oxygenations of C-H and C=C Bonds by a Mononuclear Nonheme High-Spin Iron(III)-Alkylperoxo Species. Angew Chem Int Ed Engl 2019; 58:12534-12539. [PMID: 31246329 DOI: 10.1002/anie.201906978] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Indexed: 10/26/2022]
Abstract
The reactivity of a mononuclear high-spin iron(III)-alkylperoxo intermediate [FeIII (t-BuLUrea )(OOCm)(OH2 )]2+ (2), generated from [FeII (t-BuLUrea )(H2 O)(OTf)](OTf) (1) [t-BuLUrea =1,1'-(((pyridin-2-ylmethyl)azanediyl)bis(ethane-2,1-diyl))bis(3-(tert-butyl)urea), OTf=trifluoromethanesulfonate] with cumyl hydroperoxide (CmOOH), toward the C-H and C=C bonds of hydrocarbons is reported. 2 oxygenates the strong C-H bonds of aliphatic substrates with high chemo- and stereoselectivity in the presence of 2,6-lutidine. While 2 itself is a sluggish oxidant, 2,6-lutidine assists the heterolytic O-O bond cleavage of the metal-bound alkylperoxo, giving rise to a reactive metal-based oxidant. The roles of the urea groups on the supporting ligand, and of the base, in directing the selective and catalytic oxygenation of hydrocarbon substrates by 2 are discussed.
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Affiliation(s)
- Ivy Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata-, 700032, India
| | - Sridhar Banerjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata-, 700032, India
| | - Satadal Paul
- Darjeeling Polytechnic, Kurseong, Darjeeling, 734203, India
| | - Teresa Corona
- Humboldt-Universität zu Berlin, Department of Chemistry, Brook-Taylor-Strasse 2, 12489, Berlin, Germany
| | - Tapan Kanti Paine
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata-, 700032, India
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Ghosh I, Banerjee S, Paul S, Corona T, Paine TK. Highly Selective and Catalytic Oxygenations of C−H and C=C Bonds by a Mononuclear Nonheme High‐Spin Iron(III)‐Alkylperoxo Species. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906978] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ivy Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S. C. Mullick Road Jadavpur, Kolkata- 700032 India
| | - Sridhar Banerjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S. C. Mullick Road Jadavpur, Kolkata- 700032 India
| | - Satadal Paul
- Darjeeling Polytechnic Kurseong Darjeeling 734203 India
| | - Teresa Corona
- Humboldt-Universität zu BerlinDepartment of Chemistry Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Tapan Kanti Paine
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S. C. Mullick Road Jadavpur, Kolkata- 700032 India
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Pattanayak S, Cantú Reinhard FG, Rana A, Gupta SS, de Visser SP. The Equatorial Ligand Effect on the Properties and Reactivity of Iron(V) Oxo Intermediates. Chemistry 2019; 25:8092-8104. [DOI: 10.1002/chem.201900708] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Indexed: 12/23/2022]
Affiliation(s)
- Santanu Pattanayak
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) Kolkata, Mohanpur 741246 India
| | - Fabián G. Cantú Reinhard
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical ScienceThe University of Manchester 131 Princess Street Manchester M1 7DN UK
| | - Atanu Rana
- Indian Association for the Cultivation of Sciences 2A Raja S. C. Mullick Road Kolkata 700032 India
| | - Sayam Sen Gupta
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) Kolkata, Mohanpur 741246 India
| | - Sam P. de Visser
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical ScienceThe University of Manchester 131 Princess Street Manchester M1 7DN UK
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Bohn A, Chinaux-Chaix C, Cheaib K, Guillot R, Herrero C, Sénéchal-David K, Rebilly JN, Banse F. Base-controlled mechanistic divergence between iron(iv)-oxo and iron(iii)-hydroperoxo in the H2O2 activation by a nonheme iron(ii) complex. Dalton Trans 2019; 48:17045-17051. [DOI: 10.1039/c9dt03487k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
An FeII complex reacts with excess H2O2 in the presence of sub-stoichiometric NEt3 to give FeIV(O) and FeIII(OOH) reactive species following a base-dependent and a base-independent pathway, respectively.
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Affiliation(s)
- Antoine Bohn
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Clémence Chinaux-Chaix
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Khaled Cheaib
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Régis Guillot
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Christian Herrero
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Katell Sénéchal-David
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Jean-Noël Rebilly
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
| | - Frédéric Banse
- Institut de Chimie Moléculaire et des Matériaux d'Orsay
- Univ. Paris-Sud
- Univ. Paris-Saclay
- CNRS
- 91405 Orsay cedex
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