1
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Shen X, Zhang C, Lan F, Su Z, Zheng Y, Zheng T, Xiong Q, Xie X, Du G, Zhao X, Hu C, Deng P, Yu Z. Dibenzo[
b
,
f
][1,4,5]chalcogenadiazepine Photoswitches: Conversion of Excitation Energy into Ring Strain. Angew Chem Int Ed Engl 2022; 61:e202209441. [DOI: 10.1002/anie.202209441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Indexed: 11/07/2022]
Affiliation(s)
- Xin Shen
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Cefei Zhang
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Fengying Lan
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Zhishan Su
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Yuanqin Zheng
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Tingting Zheng
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Qin Xiong
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Xinyu Xie
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Guangxi Du
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Xiaohu Zhao
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Changwei Hu
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Pengchi Deng
- Analytical & Testing Center Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry & Technology of Ministry of Education College of Chemistry Sichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
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2
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Shen X, Zhang C, Lan F, Su Z, Zheng Y, Zheng T, Xiong Q, Xie X, Du G, Zhao X, Hu C, Deng P, Yu Z. Dibenzo[b,f][1,4,5]chalcogenadiazepine Photoswitches: Conversion of Excitation Energy into Ring Strain. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202209441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xin Shen
- Sichuan University Department of Chemistry 610000 Chengdu CHINA
| | - Cefei Zhang
- Sichuan University College of Chemistry CHINA
| | - Fengying Lan
- Sichuan University Department of Chemistry CHINA
| | - Zhishan Su
- Sichuan University College of Chemistry CHINA
| | | | | | - Qin Xiong
- Sichuan University Department of Chemistry CHINA
| | - Xinyu Xie
- Sichuan University Department of Chemistry CHINA
| | - Guangxi Du
- Sichuan University Department of Chemistry CHINA
| | - Xiaohu Zhao
- Sichuan University Department of Chemistry CHINA
| | - Changwei Hu
- Sichuan University College of Chemistry CHINA
| | - Pengchi Deng
- Sichuan University Analytical & Testing Center CHINA
| | - Zhipeng Yu
- Sichuan University - Wangjiang Campus: Sichuan University College of Chemistry College of Chemistry29 Wangjianglu, Jiuyanqiao 610064 Chengdu CHINA
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3
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Garrido-Charles A, Huet A, Matera C, Thirumalai A, Hernando J, Llebaria A, Moser T, Gorostiza P. Fast Photoswitchable Molecular Prosthetics Control Neuronal Activity in the Cochlea. J Am Chem Soc 2022; 144:9229-9239. [PMID: 35584208 PMCID: PMC9164239 DOI: 10.1021/jacs.1c12314] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Indexed: 12/15/2022]
Abstract
Artificial control of neuronal activity enables the study of neural circuits and restoration of neural functions. Direct, rapid, and sustained photocontrol of intact neurons could overcome the limitations of established electrical stimulation such as poor selectivity. We have developed fast photoswitchable ligands of glutamate receptors (GluRs) to enable neuronal control in the auditory system. The new photoswitchable ligands induced photocurrents in untransfected neurons upon covalently tethering to endogenous GluRs and activating them reversibly with visible light pulses of a few milliseconds. As a proof of concept of these molecular prostheses, we applied them to the ultrafast synapses of auditory neurons of the cochlea that encode sound and provide auditory input to the brain. This drug-based method afforded the optical stimulation of auditory neurons of adult gerbils at hundreds of hertz without genetic manipulation that would be required for their optogenetic control. This indicates that the new photoswitchable ligands are also applicable to the spatiotemporal control of fast spiking interneurons in the brain.
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Affiliation(s)
- Aida Garrido-Charles
- Institute
for Bioengineering of Catalonia (IBEC), Barcelona Institute for Science
and Technology, Carrer
de Baldiri Reixac 15-21, 08028 Barcelona, Spain
- Network
Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine
(CIBER-BBN), 28029 Madrid, Spain
- Institute
for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany
- Auditory
Neuroscience and Optogenetics Group, German
Primate Center, 37077 Göttingen, Germany
- Cluster
of Excellence “Multiscale Bioimaging: from Molecular Machines
to Networks of Excitable Cells” (MBExC), University of Göttingen, 37075 Göttingen, Germany
| | - Antoine Huet
- Institute
for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany
- Auditory
Neuroscience and Optogenetics Group, German
Primate Center, 37077 Göttingen, Germany
- Cluster
of Excellence “Multiscale Bioimaging: from Molecular Machines
to Networks of Excitable Cells” (MBExC), University of Göttingen, 37075 Göttingen, Germany
- Auditory
Circuit Lab, Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany
| | - Carlo Matera
- Institute
for Bioengineering of Catalonia (IBEC), Barcelona Institute for Science
and Technology, Carrer
de Baldiri Reixac 15-21, 08028 Barcelona, Spain
- Network
Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine
(CIBER-BBN), 28029 Madrid, Spain
- Department
of Pharmaceutical Sciences, University of
Milan, Via Luigi Mangiagalli
25, 20133 Milan, Italy
| | - Anupriya Thirumalai
- Institute
for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany
- Auditory
Neuroscience and Optogenetics Group, German
Primate Center, 37077 Göttingen, Germany
- Auditory
Circuit Lab, Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany
| | - Jordi Hernando
- Departament
de Química, Universitat Autònoma
de Barcelona (UAB), Cerdanyola
del Vallès 08193, Spain
| | - Amadeu Llebaria
- Consejo
Superior de Investigaciones Científicas (IQAC-CSIC), Institute of Advanced Chemistry of Catalonia, 08034 Barcelona, Spain
| | - Tobias Moser
- Institute
for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany
- Auditory
Neuroscience and Optogenetics Group, German
Primate Center, 37077 Göttingen, Germany
- Cluster
of Excellence “Multiscale Bioimaging: from Molecular Machines
to Networks of Excitable Cells” (MBExC), University of Göttingen, 37075 Göttingen, Germany
| | - Pau Gorostiza
- Institute
for Bioengineering of Catalonia (IBEC), Barcelona Institute for Science
and Technology, Carrer
de Baldiri Reixac 15-21, 08028 Barcelona, Spain
- Network
Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine
(CIBER-BBN), 28029 Madrid, Spain
- Catalan Institution for Research and Advanced
Studies (ICREA), 08010 Barcelona, Spain
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Sah C, Mahadevan A, Kumar P, Venkataramani S. The curious case of the photochemistry of 2-hydroxyphenylazo-3,5-dimethylisoxazole: Unravelling the process among tautomer-ization, photoisomerization, and conformational changes. Phys Chem Chem Phys 2022; 24:7848-7855. [DOI: 10.1039/d1cp05344b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoswitching in azo compounds is well established. Typically, the planar trans molecule (native) can undergo isomerization to cis isomer and vice versa in solution by light. However, observing such photochemistry...
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5
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Volarić J, Szymanski W, Simeth NA, Feringa BL. Molecular photoswitches in aqueous environments. Chem Soc Rev 2021; 50:12377-12449. [PMID: 34590636 PMCID: PMC8591629 DOI: 10.1039/d0cs00547a] [Citation(s) in RCA: 138] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Indexed: 12/17/2022]
Abstract
Molecular photoswitches enable dynamic control of processes with high spatiotemporal precision, using light as external stimulus, and hence are ideal tools for different research areas spanning from chemical biology to smart materials. Photoswitches are typically organic molecules that feature extended aromatic systems to make them responsive to (visible) light. However, this renders them inherently lipophilic, while water-solubility is of crucial importance to apply photoswitchable organic molecules in biological systems, like in the rapidly emerging field of photopharmacology. Several strategies for solubilizing organic molecules in water are known, but there are not yet clear rules for applying them to photoswitchable molecules. Importantly, rendering photoswitches water-soluble has a serious impact on both their photophysical and biological properties, which must be taken into consideration when designing new systems. Altogether, these aspects pose considerable challenges for successfully applying molecular photoswitches in aqueous systems, and in particular in biologically relevant media. In this review, we focus on fully water-soluble photoswitches, such as those used in biological environments, in both in vitro and in vivo studies. We discuss the design principles and prospects for water-soluble photoswitches to inspire and enable their future applications.
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Affiliation(s)
- Jana Volarić
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
| | - Wiktor Szymanski
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
- Department of Radiology, Medical Imaging Center, University of Groningen, University Medical Centre Groningen, Hanzeplein 1, 9713 GZ Groningen, The Netherlands
| | - Nadja A Simeth
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
- Institute for Organic and Biomolecular Chemistry, University of Göttingen, Tammannstr. 2, 37077 Göttingen, Germany
| | - Ben L Feringa
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
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Corra S, Casimiro L, Baroncini M, Groppi J, La Rosa M, Tranfić Bakić M, Silvi S, Credi A. Artificial Supramolecular Pumps Powered by Light. Chemistry 2021; 27:11076-11083. [PMID: 33951231 PMCID: PMC8453702 DOI: 10.1002/chem.202101163] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Indexed: 12/13/2022]
Abstract
The development of artificial nanoscale motors that can use energy from a source to perform tasks requires systems capable of performing directionally controlled molecular movements and operating away from chemical equilibrium. Here, the design, synthesis and properties of pseudorotaxanes are described, in which a photon input triggers the unidirectional motion of a macrocyclic ring with respect to a non-symmetric molecular axle. The photoinduced energy ratcheting at the basis of the pumping mechanism is validated by measuring the relevant thermodynamic and kinetic parameters. Owing to the photochemical behavior of the azobenzene moiety embedded in the axle, the pump can repeat its operation cycle autonomously under continuous illumination. NMR spectroscopy was used to observe the dissipative non-equilibrium state generated in situ by light irradiation. We also show that fine changes in the axle structure lead to an improvement in the performance of the motor. Such results highlight the modularity and versatility of this minimalist pump design, which provides facile access to dynamic systems that operate under photoinduced non-equilibrium regimes.
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Affiliation(s)
- Stefano Corra
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Chimica Industriale “Toso Montanari”Università di BolognaViale del Risorgimento 440136BolognaItaly
| | - Lorenzo Casimiro
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Chimica “G. Ciamician”Università di BolognaVia Selmi 240126BolognaItaly
- Université Paris-Saclay, CNRS, PPSM4 Avenue des Sciences91190Gif-sur-YvetteFrance
| | - Massimo Baroncini
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Scienze e Tecnologie Agro-alimentariUniversità di BolognaViale Fanin 4440127BolognaItaly
| | - Jessica Groppi
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
| | - Marcello La Rosa
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Scienze e Tecnologie Agro-alimentariUniversità di BolognaViale Fanin 4440127BolognaItaly
| | - Marina Tranfić Bakić
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Chimica Industriale “Toso Montanari”Università di BolognaViale del Risorgimento 440136BolognaItaly
| | - Serena Silvi
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Chimica “G. Ciamician”Università di BolognaVia Selmi 240126BolognaItaly
| | - Alberto Credi
- CLAN-Center for Light Activated Nanostructures, Istituto ISOF-CNRVia Gobetti 10140129BolognaItaly
- Dipartimento di Chimica Industriale “Toso Montanari”Università di BolognaViale del Risorgimento 440136BolognaItaly
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7
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Adrion DM, Kaliakin DS, Neal P, Lopez SA. Benchmarking of Density Functionals for Z-Azoarene Half-Lives via Automated Transition State Search. J Phys Chem A 2021; 125:6474-6485. [PMID: 34260236 DOI: 10.1021/acs.jpca.1c01695] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Molecular photoswitches use light to interconvert from a thermodynamically stable isomer into a metastable isomer. Photoswitches have been used in photopharmacology, catalysis, and molecular solar thermal (MOST) materials because of their spatiotemporal activation. Visible-light-absorbing photoswitches are especially attractive because low-energy light minimizes undesired photochemical reactions and enables biological applications. Ideal photoswitches require well-separated absorption spectra for both isomers and long-lived metastable states. However, predicting thermal half-lives with density functional theory is difficult because it requires locating transition structures and chosing an accurate model chemistry. We now report EZ-TS; by automatically calculating activation energies for the thermal Z → E isomerization. We used 28 density functionals [local spin density approximation, generalized gradient approximation, meta-GGA, hybrid GGA, and hybrid meta-GGA] and five basis sets [6-31G(d), 6-31+G(d,p), 6-311+G(d,p), cc-pVDZ, and aug-cc-pVDZ]. The hybrid GGA functionals performed the best among all tested functionals. We demonstrate that the mean absolute errors of 14 model chemistries approach chemical accuracy.
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Affiliation(s)
- Daniel M Adrion
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
| | - Danil S Kaliakin
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
| | - Patrick Neal
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
| | - Steven A Lopez
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
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