1
|
Zardi P, Piękoś J, Bravin C, Wurst K, Droghetti F, Natali M, Licini G, Zambon A, Zonta C. Novel ligands from direct benzylic functionalisation of tris(2-pyridylmethyl)amine. Dalton Trans 2024; 53:13831-13836. [PMID: 39113567 DOI: 10.1039/d4dt02022g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/21/2024]
Abstract
Tris-(2-pyridylmethyl)amines (TPA or TPMA) are polipyrydine-based ligands extensively used in catalysis and supramolecular chemistry due their capability to form stable tetradentate complexes with a large variety of metals. The unsubstituted ligand, which is also commercially available, can be synthesised by consecutive alkylation of a picoline or by reductive amination of a pyridine aldehyde. In this article, we report a novel synthetic method which opens to the post-functionalisation of these ligands in the benzylic position. This novel derivatization strategy, beside providing synthetic access to novel structures and functions, has been used to prepare a series of metal complexes which have been tested in photochemical hydrogen evolution.
Collapse
Affiliation(s)
- Paolo Zardi
- Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, via Campi 103, 41125, Modena, Italy.
| | - Justyna Piękoś
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, 35131 Padova, Italy.
| | - Carlo Bravin
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, 35131 Padova, Italy.
| | - Klaus Wurst
- Department of General, Inorganic and Theoretical Chemistry University of Innsbruck, A-6020 Innsbruck, Austria
| | - Federico Droghetti
- Dipartimento di Scienze Chimiche, Farmaceutiche ed Agrarie, Università di Ferrara, via L. Borsari 46, 44121 Ferrara, Italy
| | - Mirco Natali
- Dipartimento di Scienze Chimiche, Farmaceutiche ed Agrarie, Università di Ferrara, via L. Borsari 46, 44121 Ferrara, Italy
| | - Giulia Licini
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, 35131 Padova, Italy.
- CIRCC Interuniversity Consortium Chemical Reactivity and Catalysis, Via Celso Ulpiani 27, 70126 Bari, Italy
| | - Alfonso Zambon
- Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, via Campi 103, 41125, Modena, Italy.
| | - Cristiano Zonta
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, 35131 Padova, Italy.
- CIRCC Interuniversity Consortium Chemical Reactivity and Catalysis, Via Celso Ulpiani 27, 70126 Bari, Italy
| |
Collapse
|
2
|
Hoch M, Sparascio S, Cerveri A, Bigi F, Maggi R, Viscardi R, Maestri G. The effect of tethered bi-naphthyls on visible-light promoted alkene-alkene [2 + 2] cycloadditions. Photochem Photobiol Sci 2024; 23:1543-1563. [PMID: 39073548 DOI: 10.1007/s43630-024-00615-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 07/11/2024] [Indexed: 07/30/2024]
Abstract
Dispersion interactions are ubiquitous weak interactions that can play a role in many chemical events. Tailor-made catalysts and additives can lead to more selective reactions by properly exploiting dispersion interactions. Although radical-π dispersion interactions are known to have an important stabilizing role, this concept has been so far overlooked in synthetic photochemistry. We recently proved that similar dispersion interactions can play a profound impact on several reactions involving an energy transfer step. We present herein a study on the co-catalytic effect of tethered bi-naphthyl derivatives on the visible-light-promoted alkene-alkene [2 + 2] cycloaddition. A library of tethered bi-naphthyl derivatives was prepared in order to evaluate the impact of the tether on the efficiency of the prototypical [2 + 2] cycloaddition. The best performing additives showed a dramatic effect on the efficiency of the cyclization, and a rationalization of their relative efficiency was carried out through DFT modeling. The best co-catalyst allowed one to isolate desired products in good to excellent yields even employing several challenging substrates. These results offer new tools to devise optimized [2 + 2] photocycloaddition methods and provide valuable information for the design of organic co-catalyst that can boost photochemical reactions by exploiting dispersion interactions.
Collapse
Affiliation(s)
- Matteo Hoch
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Sara Sparascio
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Alessandro Cerveri
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Franca Bigi
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
- IMEM-CNR, Parco Area delle Scienze 37/A, 43124, Parma, Italy
| | - Raimondo Maggi
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Rosanna Viscardi
- ENEA, Casaccia Research Center, 00123, Santa Maria di Galeria, Rome, Italy
| | - Giovanni Maestri
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy.
| |
Collapse
|
3
|
Lin C, Weng Y, Lin Y, Liu Y, Li X, Lv Y, Ye X, Song L, Yang G, Liu M. Porous covalent organic framework nanofibrous membrane for excellent enrichment and ultra-high sensitivity detection of trace organochlorine pesticides in water. J Chromatogr A 2024; 1721:464854. [PMID: 38579528 DOI: 10.1016/j.chroma.2024.464854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 03/13/2024] [Accepted: 03/26/2024] [Indexed: 04/07/2024]
Abstract
Developing adsorbents with high performance and long service life for effective extracting the trace organochlorine pesticides (OCPs) from real water is attracting numerous attentions. Herein, a self-standing covalent organic framework (COF-TpPa) membrane with fiber morphology was successfully synthesized by using electrospun nanofiber membranes as template and employed as solid-phase microextraction (SPME) coating for ultra-high sensitivity extraction and analysis of trace OCPs in water. The as-synthesized COF-TpPa membrane exhibited a high specific surface area (800.83 m2 g-1), stable nanofibrous structure, and excellent chemical and thermal stability. Based on the COF-TpPa membrane, a new SPME analytical method in conjunction with gas chromatography-mass spectrometry (GC-MS) was established. This proposed method possessed favorable linearity in concentration of 0.05-2000 ng L-1, high sensitivity with enrichment factors ranging from 2175 to 5846, low limits of detection (0.001-0.150 ng L-1), satisfactory precision (RSD < 10 %), and excellent repeatability (>150 cycles), which was better than most of the reported works. Additionally, the density functional theory (DFT) calculations and XPS results demonstrated that the outstanding enrichment performance of the COF-TpPa membrane was owing to synergistic effect of π-π stacking effects, high specific surface area and hydrogen bonding. This work will expect to extend the applications of COF membrane to captures trace organic pollutants in complex environmental water, as well as offer a multiscale interpretation for the design of effective adsorbents.
Collapse
Affiliation(s)
- Chunxiang Lin
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| | - Yufang Weng
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| | - Yule Lin
- School of Geographical Science, Fujian Normal University, Fuzhou 350116, China
| | - Yifan Liu
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| | - Xiaojuan Li
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| | - Yuancai Lv
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China.
| | - Xiaoxia Ye
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| | - Liang Song
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| | - Guifang Yang
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, Putian University, Putian 351100, China
| | - Minghua Liu
- Fujian Provincial Engineering Research Center of Rural Waste Recycling Technology, College of Environment & Safety Engineering, Fuzhou University, No. 2 Xueyuan Road, Shangjie Town, Minhou County, Fuzhou, Fujian 350116, China
| |
Collapse
|
4
|
Hashikawa Y, Murata Y. Direct Through-Space Substituent-π Interactions in Noncovalent Arene-Fullerene Assemblies. Chem Asian J 2024; 19:e202400075. [PMID: 38385611 DOI: 10.1002/asia.202400075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 02/19/2024] [Accepted: 02/21/2024] [Indexed: 02/23/2024]
Abstract
The arene-arene interactions between electron-rich and deficient aromatics have been less understood. Herein, we focus on a [60]fullerene π-surface as an electron-deficient aromatics. Using a 1H signal of H2O@C60 as a magnetic probe, the presence of benzene-fullerene interactions was confirmed. To investigate substituent effects on the noncovalent arene-fullerene interactions, NMR titration experiments were carried out using an open-[60]fullerene and a series of substituted benzenes, i. e., PhX (X=NO2, CN, Cl, OMe, H, CH3, and NH2), demonstrating a 1 : 2 stoichiometry with a positive correlation between stabilization energies upon the first association (ΔG1) and Hammet constants (σm). The destabilization of the self-assembled structure for X=OMe with a σ-withdrawing nature clearly showed direct through-space substituent-π interactions describable by the Wheeler-Houk model while the second association was suggested to be considerably perturbed by the secondary effects.
Collapse
Affiliation(s)
- Yoshifumi Hashikawa
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yasujiro Murata
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| |
Collapse
|
5
|
Hao W, Guo B, Liu J, Ren Q, Li S, Li Q, Zhou K, Liu L, Wu HC. Single-Molecule Exchange inside a Nanocage Provides Insights into the Origin of π-π Interactions. J Am Chem Soc 2024; 146:10206-10216. [PMID: 38536205 DOI: 10.1021/jacs.4c03159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
The attractive interactions between aromatic rings, also known as π-π interactions, have been widely used for decades. However, the origin of π-π interactions remains controversial due to the difficulties in experimentally measuring the weak interactions between π-systems. Here, we construct an elaborate system to accurately compare the strength of the π-π interactions between phenylalanine derivatives via molecular exchange processes inside a protein nanopore. Based on quantitative comparison of binding strength, we find that in most cases, the π-π interaction is primarily driven by dispersive attraction, with the electrostatic interaction playing a secondary role and tending to be repulsive. However, in cases where electronic effects are particularly strong, electrostatic induction may exceed dispersion forces to become the primary driving force for interactions between π-systems. The results of this study not only deepen our understanding of π-stacking but also have potential implications in areas where π-π interactions play a crucial role.
Collapse
Affiliation(s)
- Wenying Hao
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Bingyuan Guo
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Jianchuan Liu
- School of Electrical Engineering and Electronic Information, Xihua University, Chengdu 610039, China
| | - Qianyuan Ren
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Shumu Li
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Qian Li
- Center for Physicochemical Analysis and Measurement, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100049, China
| | - Ke Zhou
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Lei Liu
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Hai-Chen Wu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| |
Collapse
|
6
|
Schneider HJ. Distinction and Quantification of Noncovalent Dispersive and Hydrophobic Effects. Molecules 2024; 29:1591. [PMID: 38611870 PMCID: PMC11013637 DOI: 10.3390/molecules29071591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 03/15/2024] [Accepted: 03/19/2024] [Indexed: 04/14/2024] Open
Abstract
The possibilities of comparing computational results of noncovalent interactions with experimental data are discussed, first with respect to intramolecular interactions. For these a variety of experimental data such as heats of formation, crystal sublimation heats, comparison with energy minimized structures, and spectroscopic data are available, but until now largely have not found widespread application. Early force field and QM/MP2 calculations have already shown that the sublimation heats of hydrocarbons can be predicted with an accuracy of ±1%. Intermolecular interactions in solution or the gas phase are always accompanied by difficult to compute entropic contributions, like all associations between molecules. Experimentally observed T∆S values contribute 10% to 80% of the total ∆G, depending on interaction mechanisms within the complexes, such as, e.g., hydrogen bonding and ion pairing. Free energies ∆G derived from equilibrium measurements in solution allow us to define binding increments ∆∆G, which are additive and transferable to a variety of supramolecular complexes. Data from more than 90 equilibrium measurements of porphyrin receptors in water indicate that small alkanes do not bind to the hydrophobic flat surfaces within a measuring limit of ∆G = ±0.5 kJ/mol, and that 20 functions bearing heteroatoms show associations by dispersive interactions with up to ∆G = 8 kJ/mol, roughly as a function of their polarizability. Aromatic systems display size-dependent affinities ∆G as a linear function of the number of π-electrons.
Collapse
Affiliation(s)
- Hans-Jörg Schneider
- FR Organische Chemie, Universität des Saarlandes, D 66123 Saarbrücken, Germany
| |
Collapse
|
7
|
Rummel L, Schreiner PR. Advances and Prospects in Understanding London Dispersion Interactions in Molecular Chemistry. Angew Chem Int Ed Engl 2024; 63:e202316364. [PMID: 38051426 DOI: 10.1002/anie.202316364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 12/03/2023] [Accepted: 12/05/2023] [Indexed: 12/07/2023]
Abstract
London dispersion (LD) interactions are the main contribution of the attractive part of the van der Waals potential. Even though LD effects are the driving force for molecular aggregation and recognition, the role of these omnipresent interactions in structure and reactivity had been largely underappreciated over decades. However, in the recent years considerable efforts have been made to thoroughly study LD interactions and their potential as a chemical design element for structures and catalysis. This was made possible through a fruitful interplay of theory and experiment. This review highlights recent results and advances in utilizing LD interactions as a structural motif to understand and utilize intra- and intermolecularly LD-stabilized systems. Additionally, we focus on the quantification of LD interactions and their fundamental role in chemical reactions.
Collapse
Affiliation(s)
- Lars Rummel
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| |
Collapse
|
8
|
Cerveri A, Scarica G, Sparascio S, Hoch M, Chiminelli M, Tegoni M, Protti S, Maestri G. Boosting Energy-Transfer Processes via Dispersion Interactions. Chemistry 2024:e202304010. [PMID: 38224554 DOI: 10.1002/chem.202304010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 01/12/2024] [Accepted: 01/15/2024] [Indexed: 01/17/2024]
Abstract
The generation of open-shell intermediates under mild conditions has opened broad synthetic opportunities during this century. However, these reactive species often require a case specific and tailored tuning of experimental parameters in order to efficiently convert substrates into products. We report a general approach that can overcome these ubiquitous limitations for several visible-light promoted energy-transfer processes. The use of either naphthalene (5-20 equiv.) or simple binaphthyl derivatives (10-30 mol %) greatly increases their efficiency, giving rise to a new strategy for catalysis. The trend is consistent among different media, photocatalysts, light sources and substrates, allowing one to improve existing methods, to more easily optimize conditions for new ones, and, moreover, to disclose otherwise inaccessible reaction pathways.
Collapse
Affiliation(s)
- Alessandro Cerveri
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Gabriele Scarica
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Sara Sparascio
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Matteo Hoch
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Maurizio Chiminelli
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Matteo Tegoni
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Stefano Protti
- PhotoGreen Lab, Department of Chemistry, Università di Pavia, Via Taramelli 10, 27100, Pavia, Italy
| | - Giovanni Maestri
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| |
Collapse
|
9
|
Assaf KI, Nau WM. Dispersion Interactions in Condensed Phases and inside Molecular Containers. Acc Chem Res 2023; 56:3451-3461. [PMID: 37956240 DOI: 10.1021/acs.accounts.3c00523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
ConspectusThe past decade has seen significant progress in the understanding and appreciation of the importance of London dispersion interactions (LDIs) in supramolecular systems and solutions. The Slater-Kirkwood formula relates LDIs to the molecular polarizabilities of the two interacting molecular species (α) and their interaction distance (a dependence of R-6). When advancing arguments related to intermolecular interactions, it is frequently assumed that molecules with larger molecular polarizabilities are more amenable to larger LDIs. However, arguments related to molecular polarizabilities are not always transferable to the condensed phase. In fact, the underlying bulk and molecular polarizabilities of common solvents show opposing trends. The intuitive concept that aromatic molecules are more polarizable than saturated hydrocarbons and that perfluorinated molecules are less polarizable than saturated hydrocarbons applies to the condensed phase only. When treating association phenomena in solution, where LDIs are generally very attenuated, the use of bulk polarizabilities is recommended, which are experimentally accessible through either refractive index measurements or suitable solvatochromic probes. Such probes can also be used to assess polarizabilities inside molecular container compounds, such as cucurbit[n]urils (CBn), cyclodextrins, calixarenes, and hemicarcerands. These macrocyclic cavities can have extreme microenvironments. For example, the inner concave phase of CB7 has been shown to be weakly polarizable, falling in between the gas phase and perfluorohexane; those of β-cyclodextrin and p-sulfonatocalix[4]arene have been found to be similarly polarizable as water and alkanes, respectively, and the inside of hemicarcerands displays a very large bulk polarizability, exceeding that of diiodomethane. CBn compounds are privileged molecular container compounds, which we exemplify in this Account through case studies. (1) CBn macrocycles are prime water-soluble receptors for hydrocarbons, allowing for the reduction of the binding free energies to two components: the hydrophobic effect and dispersion interactions. To understand hydrocarbon binding, we initiated the HYDROPHOBE challenge, which revealed the shortcomings of both quantum-chemical and molecular dynamics approaches. (2) The smallest CBn receptor, CB5, is uniquely suited to bind the entire noble gas series, where hydrophobic effects and dispersion interactions operate in opposite directions. CB5 was revaled to be a unique synthetic receptor for noble gases, with the dominant driving force being the recovery of the cavitation energies for the hydration of noble gases in aqueous solution. Computational methods that encounter challenges in predicting hydrocarbon affinities and trends for CB6 and CB7 perform well for noble gases binding to CB5. (3) The larger homologue, CB8, allows one to set up intermolecular interaction chambers by the encapsulation of a (first) aromatic guest, thereby tuning LDIs inside the receptor cavity. In this manner, CB8 can be modulated to preferentially bind unsaturated and aromatic rather than saturated hydrocarbons, while the unmodified cavities of the smaller macrocycles CB6 and CB7 show selective binding of saturated hydrocarbons. (4) The (charged) host-guest complexes of CBn hosts are sufficiently stable in the gas phase, allowing for the study of the influence of LDIs on inner-phase chemical reactions. These studies are particularly interesting for the theoretical analysis of isolated host-guest LDIs, as experimental and computational data are directly comparable in the gas phase due to the absence of the solvation effect.
Collapse
Affiliation(s)
- Khaleel I Assaf
- Al-Balqa Applied University, Faculty of Science, Department of Chemistry, 19117 Al-Salt, Jordan
| | - Werner M Nau
- Constructor University, School of Science, Campus Ring 1, 28759 Bremen, Germany
| |
Collapse
|
10
|
Gravillier LA, Cockroft SL. Context-Dependent Significance of London Dispersion. Acc Chem Res 2023; 56:3535-3544. [PMID: 37994023 DOI: 10.1021/acs.accounts.3c00625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2023]
Abstract
ConspectusLondon forces constitute an attractive component of van der Waals interactions and originate from transient correlated momentary dipoles in adjacent atoms. The in-depth investigation of London dispersion forces poses notable challenges, especially in solution, owing to their inherently weak and competing character. Our objective in this Account is to shed light on the context-dependent significance of London dispersion forces by contrasting our own experimental findings with those from other research endeavors. Specifically, we will explore how factors such as the choice of system and solvent can influence the apparent role of London dispersion forces in molecular recognition processes. We initiate our Account by scrutinizing the Wilcox balance, which has yielded diverse and occasionally contradictory results. Following that, we provide an overview of the role of London dispersion forces and their context-dependent variations, encompassing alkyl-alkyl, halogen-π, alkyl-π, and aromatic stacking interactions.Several experimental investigations have revealed how difficult it is to measure the significance of London dispersion in solution. Indeed, dispersion forces seldom act as the exclusive driving force in molecular recognition processes, and solvation energetics also strongly influence equilibria and kinetics. Molecular balances that bring apolar functional groups into contact have proven to be instrumental in the experimental measurement of dispersion. The intramolecular approach avoids the need to pay the entropic cost of bringing interacting groups into contact, while also enabling solvent screening. Such experimental studies have found dispersion interactions between functional groups to be very weak (<5 kJ mol-1), meaning that they frequently take backstage to electrostatic contributions and solvophobic effects and are readily damped by competitive dispersion interactions with the solvent. By using such approaches, competitive dispersion interactions with the solvent have been shown to be described by the bulk polarizability of the solvent (perfluoroalkanes have the lowest bulk polarizabilities, while carbon disulfide has one of the highest). Dispersion interactions are also strongly distance-dependent, which results in considerable context-dependent outcomes across different investigations. For example, we caution against the risk of attributing the stability of a "more sterically hindered" isomer as arising from intramolecular dispersion forces. The total energy of the system can reveal other contributions to stability, such as nonintuitive minimization of strain elsewhere in the molecule. Indeed, the delicate distance-dependent balance between sterics and London dispersion means that even subtle changes in size and geometry can lead to disparate behavior. Similarly, solvophobic effects also contribute to stabilizing contacts between bulky functional groups, which can be revealed if there is a correlation with the cohesive energy density of the solvent.
Collapse
Affiliation(s)
- Louis-Albin Gravillier
- EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, U.K
| | - Scott L Cockroft
- EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, U.K
| |
Collapse
|
11
|
Sun J, Decato DA, Bryantsev VS, John EA, Berryman OB. The interplay between hydrogen and halogen bonding: substituent effects and their role in the hydrogen bond enhanced halogen bond. Chem Sci 2023; 14:8924-8935. [PMID: 37621436 PMCID: PMC10445465 DOI: 10.1039/d3sc02348f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 07/20/2023] [Indexed: 08/26/2023] Open
Abstract
The hydrogen bond enhanced halogen bond (HBeXB) has recently been used to effectively improve anion binding, organocatalysis, and protein structure/function. In this study, we present the first systematic investigation of substituent effects in the HBeXB. NMR analysis confirmed intramolecular HBing between the amine and the electron-rich belt of the XB donor (N-H⋯I). Gas-phase density functional theory studies showed that the influence of HBing on the halogen atom is more sensitive to substitution on the HB donor ring (R1). The NMR studies revealed that the intramolecular HBing had a significant impact on receptor performance, resulting in a 50-fold improvement. Additionally, linear free energy relationship (LFER) analysis was employed for the first time to study the substituent effect in the HBeXB. The results showed that substituents on the XB donor ring (R2) had a competing effect where electron donating groups strengthened the HB and weakened the XB. Therefore, selecting an appropriate substituent on the adjacent HB donor ring (R1) could be an alternative and effective way to enhance an electron-rich XB donor. X-ray crystallographic analysis demonstrated that intramolecular HBing plays an important role in the receptor adopting the bidentate conformation. Taken together, the findings imply that modifying distal substituents that affect neighboring noncovalent interactions can have a similar impact to conventional para substitution substituent effects.
Collapse
Affiliation(s)
- Jiyu Sun
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive Missoula MT 59812 USA
| | - Daniel A Decato
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive Missoula MT 59812 USA
| | | | - Eric A John
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive Missoula MT 59812 USA
| | - Orion B Berryman
- Department of Chemistry and Biochemistry, University of Montana, 32 Campus Drive Missoula MT 59812 USA
| |
Collapse
|
12
|
Begato F, Licini G, Zonta C. Programmed guest confinement via hierarchical cage to cage transformations. Chem Sci 2023; 14:8147-8151. [PMID: 37538831 PMCID: PMC10395264 DOI: 10.1039/d3sc01368e] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 06/11/2023] [Indexed: 08/05/2023] Open
Abstract
Taking inspiration from Nature, where (bio)molecular geometry variations are exploited to tune a large variety of functions, supramolecular chemistry has continuously developed novel systems in which, as a consequence of a specific stimulus, structural changes occur. Among the different architectures, supramolecular cages have been continuously investigated for their capability to act as functional hosts where guests can be released in a controlled fashion. In this paper, a novel methodology based on the use of phenanthrenequinone is applied to selectively change the binding properties of a tris(2-pyridylmethyl)amine TPMA-based cage. In particular, subcomponent substitution has been used to change structural cage features thus controlling the inclusion ratio of competing guests differing in size or chirality.
Collapse
Affiliation(s)
- Federico Begato
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
| | - Giulia Licini
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
| | - Cristiano Zonta
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
| |
Collapse
|
13
|
Tobajas-Curiel G, Sun Q, Sanders JKM, Ballester P, Hunter CA. Substituent effects on aromatic interactions in water. Chem Sci 2023; 14:6226-6236. [PMID: 37325132 PMCID: PMC10266462 DOI: 10.1039/d3sc01027a] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 04/28/2023] [Indexed: 06/17/2023] Open
Abstract
Molecular recognition in water involves contributions due to polar functional group interactions, partial desolvation of polar and non-polar surfaces and changes in conformational flexibility, presenting a challenge for rational design and interpretation of supramolecular behaviour. Conformationally well-defined supramolecular complexes that can be studied in both water and non-polar solvents provide a platform for disentangling these contributions. Here 1 : 1 complexes formed between four different calix[4]pyrrole receptors and thirteen different pyridine N-oxide guests have been used to dissect the factors that govern substituent effects on aromatic interactions in water. H-bonding interactions between the receptor pyrrole donors and the guest N-oxide acceptor at one end of the complex lock the geometrical arrangement of a cluster of aromatic interactions at the other end of the complex, so that a phenyl group on the guest makes two edge-to-face and two stacking interactions with the four aromatic side-walls of the receptor. The thermodynamic contribution of these aromatic interactions to the overall stability of the complex was quantified by chemical double mutant cycles using isothermal titration calorimetry and 1H NMR competition experiments. Aromatic interactions between the receptor and a phenyl group on the guest stabilise the complex by a factor of 1000, and addition of substituents to the guest phenyl group further stabilises the complex by an additional factor of up to 1000. When a nitro substituent is present on the guest phenyl group, the complex has a sub-picomolar dissociation constant (370 fM). The remarkable substituent effects observed in water for these complexes can be rationalised by comparison with the magnitude of the corresponding substituent effects measured in chloroform. In chloroform, the double mutant cycle free energy measurements of the aromatic interactions correlate well with the substituent Hammett parameters. Electron-withdrawing substituents increase the strength of the interactions by a factor of up to 20, highlighting the role of electrostatics in stabilising both the edge-to-face and stacking interactions. The enhanced substituent effects observed in water are due to entropic contributions associated with the desolvation of hydrophobic surfaces on the substituents. The flexible alkyl chains that line the open end of the binding site assist the desolvation of the non-polar π-surfaces of polar substituents, like nitro, but at the same time allow water to interact with the polar H-bond acceptor sites on the substituent. This flexibility allows polar substituents to maximise non-polar interactions with the receptor and polar interactions with the solvent, leading to remarkably high binding affinities.
Collapse
Affiliation(s)
| | - Qingqing Sun
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST) Av. Països Catalans, 16, 43007 Tarragona Spain
- Yangzhou University, School of Chemistry and Chemical Engineering Yangzhou 225002 Jiangsu China
| | - Jeremy K M Sanders
- Yusuf Hamied Department of Chemistry, University of Cambridge Cambridge CB2 1EW UK
| | - Pablo Ballester
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST) Av. Països Catalans, 16, 43007 Tarragona Spain
- ICREA Passeig Lluís Companys 23 08010 Barcelona Spain
| | - Christopher A Hunter
- Yusuf Hamied Department of Chemistry, University of Cambridge Cambridge CB2 1EW UK
| |
Collapse
|
14
|
Lo R, Mašínová A, Lamanec M, Nachtigallová D, Hobza P. The unusual stability of H-bonded complexes in solvent caused by greater solvation energy of complex compared to those of isolated fragments. J Comput Chem 2023; 44:329-333. [PMID: 35616117 DOI: 10.1002/jcc.26928] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 04/25/2022] [Accepted: 04/28/2022] [Indexed: 01/03/2023]
Abstract
Here, the effect of solvent on the stability of non-covalent complexes, was studied. These complexes were from previously published S22, S66, and X40 datasets, which include hydrogen-, halogen- and dispersion-bonded complexes. It was shown that the charge transfer in the complex determines whether the complex is stabilized or destabilized in solvent.
Collapse
Affiliation(s)
- Rabindranath Lo
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Anna Mašínová
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Maximilián Lamanec
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic.,Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czech Republic
| | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic.,Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic.,Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czech Republic
| |
Collapse
|
15
|
Storer MC, Hunter CA. The surface site interaction point approach to non-covalent interactions. Chem Soc Rev 2022; 51:10064-10082. [PMID: 36412990 DOI: 10.1039/d2cs00701k] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The functional properties of molecular systems are generally determined by the sum of many weak non-covalent interactions, and therefore methods for predicting the relative magnitudes of these interactions is fundamental to understanding the relationship between function and structure in chemistry, biology and materials science. This review focuses on the Surface Site Interaction Point (SSIP) approach which describes molecules as a set of points that capture the properties of all possible non-covalent interactions that the molecule might make with another molecule. The first half of the review focuses on the empirical non-covalent interaction parameters, α and β, and provides simple rules of thumb to estimate free energy changes for interactions between different types of functional group. These parameters have been used to have been used to establish a quantitative understanding of the role of solvent in solution phase equilibria, and to describe non-covalent interactions at the interface between macroscopic surfaces as well as in the solid state. The second half of the review focuses on a computational approach for obtaining SSIPs and applications in multi-component systems where many different interactions compete. Ab initio calculation of the Molecular Electrostatic Potential (MEP) surface is used to derive an SSIP description of a molecule, where each SSIP is assigned a value equivalent to the corresponding empirical parameter, α or β. By considering the free energies of all possible pairing interactions between all SSIPs in a molecular ensemble, it is possible to calculate the speciation of all intermolecular interactions and hence predict thermodynamic properties using the SSIMPLE algorithm. SSIPs have been used to describe both the solution phase and the solid state and provide accurate predictions of partition coefficients, solvent effects on association constants for formation of intermolecular complexes, and the probability of cocrystal formation. SSIPs represent a simple and intuitive tool for describing the relationship between chemical structure and non-covalent interactions with sufficient accuracy to understand and predict the properties of complex molecular ensembles without the need for computationally expensive simulations.
Collapse
Affiliation(s)
- Maria Chiara Storer
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| | - Christopher A Hunter
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| |
Collapse
|
16
|
Yamada M, Kurihara Y, Koizumi M, Tsuji K, Maeda Y, Suzuki M. Understanding the Nature and Strength of Noncovalent Face‐to‐Face Arene–Fullerene Interactions. Angew Chem Int Ed Engl 2022; 61:e202212279. [DOI: 10.1002/anie.202212279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Indexed: 11/07/2022]
Affiliation(s)
- Michio Yamada
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1, Koganei Tokyo 184-8501 Japan
| | - Yukiyo Kurihara
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1, Koganei Tokyo 184-8501 Japan
| | - Masaaki Koizumi
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1, Koganei Tokyo 184-8501 Japan
| | - Kasumi Tsuji
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1, Koganei Tokyo 184-8501 Japan
| | - Yutaka Maeda
- Department of Chemistry Tokyo Gakugei University Nukuikitamachi 4-1-1, Koganei Tokyo 184-8501 Japan
| | - Mitsuaki Suzuki
- Department of Chemistry Josai University Sakado Saitama 350-0295 Japan
| |
Collapse
|
17
|
Yamada M, Kurihara Y, Koizumi M, Tsuji K, Maeda Y, Suzuki M. Understanding the Nature and Strength of Noncovalent Face‐to‐Face Arene–Fullerene Interactions. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202212279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Michio Yamada
- Tokyo Gakugei University Department of Chemistry 4-1-1 Nukuikitamachi 184-8501 Koganei, Tokyo JAPAN
| | - Yukiyo Kurihara
- Tokyo Gakugei University: Tokyo Gakugei Daigaku Department of Chemistry JAPAN
| | - Masaaki Koizumi
- Tokyo Gakugei University: Tokyo Gakugei Daigaku Department of Chemistry JAPAN
| | - Kasumi Tsuji
- Tokyo Gakugei University: Tokyo Gakugei Daigaku Department of Chemistry JAPAN
| | - Yutaka Maeda
- Tokyo Gakugei University: Tokyo Gakugei Daigaku Department of Chemistry JAPAN
| | - Mitsuaki Suzuki
- Josai University: Josai Daigaku Department of Chemistry JAPAN
| |
Collapse
|
18
|
Bravin C, Mazzeo G, Abbate S, Licini G, Longhi G, Zonta C. Helicity control of a perfluorinated carbon chain within a chiral supramolecular cage monitored by VCD. Chem Commun (Camb) 2022; 58:2152-2155. [PMID: 35059695 DOI: 10.1039/d1cc06861j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Confinement within supramolecular systems is the leading technology to finely tune guest functional properties. In this communication we report the synthesis of a chiral supramolecular cage able to bias the helicity of a perfluorinated carbon chain hosted within the cage. We monitor the phenomenon of chiral induction by Vibrational Circular Dichroism (VCD) experiments complemented by DFT calculations over the possible conformers.
Collapse
Affiliation(s)
- Carlo Bravin
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Padova, PD, Italy.
| | - Giuseppe Mazzeo
- Department of Molecular and Translational Medicine, Università di Brescia, Viale Europa 11, 25123 Brescia, BS, Italy.
| | - Sergio Abbate
- Department of Molecular and Translational Medicine, Università di Brescia, Viale Europa 11, 25123 Brescia, BS, Italy.
| | - Giulia Licini
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Padova, PD, Italy.
| | - Giovanna Longhi
- Department of Molecular and Translational Medicine, Università di Brescia, Viale Europa 11, 25123 Brescia, BS, Italy.
| | - Cristiano Zonta
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Padova, PD, Italy.
| |
Collapse
|