1
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Remmerswaal WA, de Jong T, van de Vrande KNA, Louwersheimer R, Verwaal T, Filippov DV, Codée JDC, Hansen T. Backside versus Frontside S N2 Reactions of Alkyl Triflates and Alcohols. Chemistry 2024; 30:e202400590. [PMID: 38385647 DOI: 10.1002/chem.202400590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 02/22/2024] [Indexed: 02/23/2024]
Abstract
Nucleophilic substitution reactions are elementary reactions in organic chemistry that are used in many synthetic routes. By quantum chemical methods, we have investigated the intrinsic competition between the backside SN2 (SN2-b) and frontside SN2 (SN2-f) pathways using a set of simple alkyl triflates as the electrophile in combination with a systematic series of phenols and partially fluorinated ethanol nucleophiles. It is revealed how and why the well-established mechanistic preference for the SN2-b pathway slowly erodes and can even be overruled by the unusual SN2-f substitution mechanism going from strong to weak alcohol nucleophiles. Activation strain analyses disclose that the SN2-b pathway is favored for strong alcohol nucleophiles because of the well-known intrinsically more efficient approach to the electrophile resulting in a more stabilizing nucleophile-electrophile interaction. In contrast, the preference of weaker alcohol nucleophiles shifts to the SN2-f pathway, benefiting from a stabilizing hydrogen bond interaction between the incoming alcohol and the leaving group. This hydrogen bond interaction is strengthened by the increased acidity of the weaker alcohol nucleophiles, thereby steering the mechanistic preference toward the frontside SN2 pathway.
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Affiliation(s)
- Wouter A Remmerswaal
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Tjeerd de Jong
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Koen N A van de Vrande
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Rick Louwersheimer
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Thomas Verwaal
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Dmitri V Filippov
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Jeroen D C Codée
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
| | - Thomas Hansen
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The, Netherlands
- Department of Chemistry and Pharmaceutical Sciences, AIMMS, Vrije Universiteit Amsterdam, De Boelelaan 1108, 1081 HZ, Amsterdam, The, Netherlands
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2
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de Andrade KN, Peixoto BP, Carneiro JWDM, Fiorot RG. Exploring borderline S N1-S N2 mechanisms: the role of explicit solvation protocols in the DFT investigation of isopropyl chloride. RSC Adv 2024; 14:4692-4701. [PMID: 38318615 PMCID: PMC10841197 DOI: 10.1039/d4ra00066h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Accepted: 01/30/2024] [Indexed: 02/07/2024] Open
Abstract
Nucleophilic substitution at saturated carbon is a crucial class of organic reactions, playing a pivotal role in various chemical transformations that yield valuable compounds for society. Despite the well-established SN1 and SN2 mechanisms, secondary substrates, particularly in solvolysis reactions, often exhibit a borderline pathway. A molecular-level understanding of these processes is fundamental for developing more efficient chemical transformations. Typically, quantum-chemical simulations of the solvent medium combine explicit and implicit solvation methods. The configuration of explicit molecules can be defined through top-down approaches, such as Monte Carlo (MC) calculations for generating initial configurations, and bottom-up methods that involve user-dependent protocols to add solvent molecules around the substrate. Herein, we investigated the borderline mechanism of the hydrolysis of a secondary substrate, isopropyl chloride (iPrCl), at DFT-M06-2X/aug-cc-pVDZ level, employing explicit and explicit + implicit protocols. Top-down and bottom-up approaches were employed to generate substrate-solvent complexes of varying number (n = 1, 3, 5, 7, 9, and 12) and configurations of H2O molecules. Our findings consistently reveal that regardless of the solvation approach, the hydrolysis of iPrCl follows a loose-SN2-like mechanism with nucleophilic solvent assistance. Increasing the water cluster around the substrate in most cases led to reaction barriers of ΔH‡ ≈ 21 kcal mol-1, with nine water molecules from MC configurations sufficient to describe the reaction. The More O'Ferrall-Jencks plot demonstrates an SN1-like character for all transition state structures, showing a clear merged profile. The fragmentation activation strain analyses indicate that energy barriers are predominantly controlled by solvent-substrate interactions, supported by the leaving group stabilization assessed through CHELPG atomic charges.
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Affiliation(s)
- Karine Nascimento de Andrade
- Department of Organic Chemistry, Chemistry Institute, Universidade Federal Fluminense (UFF) Outeiro de São João Batista 24020-141 Niterói RJ Brazil
| | - Bárbara Pereira Peixoto
- Department of Organic Chemistry, Chemistry Institute, Universidade Federal Fluminense (UFF) Outeiro de São João Batista 24020-141 Niterói RJ Brazil
| | - José Walkimar de Mesquita Carneiro
- Department of Inorganic Chemistry, Chemistry Institute, Universidade Federal Fluminense (UFF) Outeiro de São João Batista 24020-141 Niterói RJ Brazil
| | - Rodolfo Goetze Fiorot
- Department of Organic Chemistry, Chemistry Institute, Universidade Federal Fluminense (UFF) Outeiro de São João Batista 24020-141 Niterói RJ Brazil
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3
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Inter- and Intra-Molecular Organocatalysis of S N2 Fluorination by Crown Ether: Kinetics and Quantum Chemical Analysis. Molecules 2021; 26:molecules26102947. [PMID: 34063489 PMCID: PMC8156096 DOI: 10.3390/molecules26102947] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 05/05/2021] [Accepted: 05/12/2021] [Indexed: 11/29/2022] Open
Abstract
We present the intra- and inter-molecular organocatalysis of SN2 fluorination using CsF by crown ether to estimate the efficacy of the promoter and to elucidate the reaction mechanism. The yields of intramolecular SN2 fluorination of the veratrole substrates are measured to be very small (<1% in 12 h) in the absence of crown ether promoters, whereas the SN2 fluorination of the substrate possessing a crown ether unit proceeds to near completion (~99%) in 12 h. We also studied the efficacy of intermolecular rate acceleration by an independent promoter 18-crown-6 for comparison. We find that the fluorinating yield of a veratrole substrate (leaving group = −OMs) in the presence of 18-crown-6 follows the almost identical kinetic course as that of intramolecular SN2 fluorination, indicating the mechanistic similarity of intra- and inter-molecular organocatalysis of the crown ether for SN2 fluorination. The calculated relative Gibbs free energies of activation for these reactions, in which the crown ether units act as Lewis base promoters for SN2 fluorination, are in excellent agreement with the experimentally measured yields of fluorination. The role of the metal salt CsF is briefly discussed in terms of whether it reacts as a contact ion pair or as a “free” nucleophile F−.
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4
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Chen Y, Zhang X, Liu F, He G, Zhang J, Houk K, Smith AB, Liang Y. The role of CuI in the siloxane-mediated Pd-catalyzed cross-coupling reactions of aryl iodides with aryl lithium reagents. CHINESE CHEM LETT 2021; 32:441-444. [PMID: 33994753 PMCID: PMC8115222 DOI: 10.1016/j.cclet.2020.05.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Experiments indicate that a catalytic amount of CuI plays an important role in the siloxane-mediated Pd-catalyzed cross-coupling reactions with the direct use of organolithium reagents. Addition of organolithium to the siloxane transfer agent generates an organosilicon intermediate. DFT calculations indicate that CuI initially accelerates the Si-Pd(II) transmetalation of the organosilicon intermediate by the formation of CuI2 -. Subsequently, CuI2 - works as a shuttle between the Si-Cu(I) and Cu(I)-Pd(II) transmetalation processes.
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Affiliation(s)
- Yu Chen
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xiao Zhang
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Fang Liu
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Gucheng He
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Ju Zhang
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - K.N. Houk
- Department of Chemistry and Biochemistry, University of California, CA 90095, United States
| | - Amos B. Smith
- Department of Chemistry, University of Pennsylvania, PA 19104, United States
| | - Yong Liang
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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5
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Climent C, Feist J. On the S N2 reactions modified in vibrational strong coupling experiments: reaction mechanisms and vibrational mode assignments. Phys Chem Chem Phys 2020; 22:23545-23552. [PMID: 33063807 DOI: 10.1039/d0cp04154h] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent experiments have reported modified chemical reactivity under vibrational strong coupling (VSC) in microfluidic Fabry-Pérot cavities. In particular, the reaction rate of nucleophilic substitution reactions at silicon centers (SN2@Si) has been altered when a vibrational mode of the reactant was coupled to a confined light mode in the strong coupling regime. In this situation, hybrid light-matter states known as polaritons are formed and seem to be responsible for the modified chemical kinetics. These results are very encouraging for future applications of polaritonic chemistry to catalyze chemical reactions, with the ability to manipulate chemical phenomena without any external excitation of the system. Still, there is no theory capable of explaining the mechanism behind these results. In this work we address two points that are crucial for the interpretation of these experiments. Firstly, by means of electronic structure calculations we report the reaction mechanism in normal conditions of the two recently modified SN2@Si reactions, obtaining in both cases a triple-well PES where the rate-determining step is due to the Si-C and Si-O bond cleavage. Secondly, we characterize in detail the normal modes of vibration of the reactants. In the VSC experiments, reaction rates were modified only when specific vibrations of the reactants were coupled to a cavity mode. We find that these vibrations are highly mixed among the different fragments of the reactants leading to a completely new assignment of the IR peaks coupled to cavity modes in the original experimental works. Our results are fundamental for the interpretation of the VSC experiments given that in the absence of a theory explaining these results, the current phenomenological understanding relies on the assignment of the character of the vibrational IR peaks.
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Affiliation(s)
- Clàudia Climent
- Departamento de Física Teórica de la Materia Condensada and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, E-28049 Madrid, Spain.
| | - Johannes Feist
- Departamento de Física Teórica de la Materia Condensada and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, E-28049 Madrid, Spain.
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6
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Tang H, Porter TM, Kubiak CP, Hall MB. Full Conformational Analyses of the Ultrafast Isomerization in Penta-coordinated Ru(S 2C 2(CF 3) 2)(CO)(PPh 3) 2: One Compound, Two Crystal Structures, Three CO Frequencies, 24 Stereoisomers, and 48 Transition States. Inorg Chem 2020; 59:11757-11769. [PMID: 32799482 DOI: 10.1021/acs.inorgchem.0c01708] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The stereodynamics of an ultrafast (picosecond) isomerization in a penta-coordinated ruthenium complex, Ru(S2C2(CF3)2)(CO)(PPh3)2, were characterized by density functional theory (DFT). The ruthenium complex crystallizes in two almost-square pyramidal (SP) forms. The violet form has an apical PPh3 ligand, the orange form has an apical CO ligand, and their solution displays three CO stretching frequencies. With 4 possible centers of chirality (1 ruthenium, 2 phosphines, and 1 dithiolate), there are 24 stereoisomers. DFT calculations of these stereoisomers show structures ranging from almost-perfect SP (τ5 ≈ 0) to structures significantly distorted toward trigonal bipyramidal (TBP) (τ5 ≈ 0.6). The stereoisomers fall neatly into three groups, with νCO ≈ 1960 cm-1, 1940 cm-1, and 1980 cm-1. These isomers were found to interconvert over relatively small barriers via Ru-S bond twisting, CF3 rotation, phenyl twisting, PPh3 rotation, and, in some cases, by coupled motions. The composite energy surface for each CO frequency group shows that interconversions among the low-energy structures are possible via both the direct and indirect pathways, while the indirect pathway via isomers in the νCO ≈ 1980 cm-1 group is more favorable, which is a result consistent with recent experimental work. This work provides the first complete mechanistic picture of the ultrafast isomerization of penta-coordinated, distorted SP, d6-transition-metal complexes.
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Affiliation(s)
- Hao Tang
- Department of Chemistry, Texas A&M University, College Station, Texas 77845, United States
| | - Tyler M Porter
- Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093-0358, United States
| | - Clifford P Kubiak
- Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093-0358, United States
| | - Michael B Hall
- Department of Chemistry, Texas A&M University, College Station, Texas 77845, United States
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7
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Barth ER, Krupp A, Langenohl F, Brieger L, Strohmann C. Kinetically controlled asymmetric synthesis of silicon-stereogenic methoxy silanes using a planar chiral ferrocene backbone. Chem Commun (Camb) 2019; 55:6882-6885. [PMID: 31134229 DOI: 10.1039/c9cc03619a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We present a mechanistic proposal for the desymmetrisation of dimethoxy silanes with alkyllithiums. The stereochemical pathway is highly defined by the coordination of the metal lithium, which suppresses the reversible interconversion of the various pentavalent intermediates. The predicted kinetic control of the stereoinduction is verified by the experiments using a planar chiral ferrocene backbone.
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Affiliation(s)
- Eva R Barth
- Institute for Inorganic Chemistry, Technical University Dortmund, University, Otto-Hahn-Straße 6, 44227 Dortmund, Germany.
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8
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Boydas EB, Tanriver G, D'hooghe M, Ha HJ, Van Speybroeck V, Catak S. Theoretical insight into the regioselective ring-expansions of bicyclic aziridinium ions. Org Biomol Chem 2019; 16:796-806. [PMID: 29323389 DOI: 10.1039/c7ob02253k] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Transient bicyclic aziridinium ions are known to undergo ring-expansion reactions, paving the way to functionalized nitrogen-containing heterocycles. In this study, the regioselectivity observed in the ring-expansion reactions of 1-azoniabicyclo[n.1.0]alkanes was investigated from a computational viewpoint to study the ring-expansion pathways of two bicyclic systems with different ring sizes. Moreover, several nucleophiles leading to different experimental results were investigated. The effect of solvation was taken into account using both explicit and implicit solvent models. This theoretical rationalization provides valuable insight into the observed regioselectivity and may be used as a predictive tool in future studies.
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Affiliation(s)
- Esma B Boydas
- Bogazici University, Department of Chemistry, Bebek, 34342 Istanbul, Turkey.
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9
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Laloo JZA, Savoo N, Laloo N, Rhyman L, Ramasami P. ExcelAutomat 1.3: Fragment analysis based on the distortion/interaction-activation strain model. J Comput Chem 2018; 40:619-624. [DOI: 10.1002/jcc.25546] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Revised: 06/27/2018] [Accepted: 07/07/2018] [Indexed: 12/15/2022]
Affiliation(s)
- Jalal Z. A. Laloo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
| | - Nandini Savoo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
| | - Nassirah Laloo
- School of Innovative Technologies and Engineering, Department of Creative Arts, Film and Media Technologies, University of Technology; Mauritius, La Tour Koenig, Pointe-aux-Sables 11129 Mauritius
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
- Department of Applied Chemistry; University of Johannesburg, Doornfontein Campus; Johannesburg 2028 South Africa
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
- Department of Applied Chemistry; University of Johannesburg, Doornfontein Campus; Johannesburg 2028 South Africa
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10
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Hamlin TA, Swart M, Bickelhaupt FM. Nucleophilic Substitution (S N 2): Dependence on Nucleophile, Leaving Group, Central Atom, Substituents, and Solvent. Chemphyschem 2018; 19:1315-1330. [PMID: 29542853 PMCID: PMC6001448 DOI: 10.1002/cphc.201701363] [Citation(s) in RCA: 118] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Indexed: 11/12/2022]
Abstract
The reaction potential energy surface (PES), and thus the mechanism of bimolecular nucleophilic substitution (SN 2), depends profoundly on the nature of the nucleophile and leaving group, but also on the central, electrophilic atom, its substituents, as well as on the medium in which the reaction takes place. Here, we provide an overview of recent studies and demonstrate how changes in any one of the aforementioned factors affect the SN 2 mechanism. One of the most striking effects is the transition from a double-well to a single-well PES when the central atom is changed from a second-period (e. g. carbon) to a higher-period element (e.g, silicon, germanium). Variations in nucleophilicity, leaving group ability, and bulky substituents around a second-row element central atom can then be exploited to change the single-well PES back into a double-well. Reversely, these variations can also be used to produce a single-well PES for second-period elements, for example, a stable pentavalent carbon species.
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Affiliation(s)
- Trevor A. Hamlin
- Department of Theoretical Chemistry andAmsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081 HVAmsterdamThe Netherlands
| | - Marcel Swart
- Department of Theoretical Chemistry andAmsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081 HVAmsterdamThe Netherlands
- Institut de Química Computacional I Catàlisi and Department de QuímicaUniversitat de Girona17003GironaSpain
- ICREAPg. Lluís Companys 2308010BarcelonaSpain
| | - F. Matthias Bickelhaupt
- Department of Theoretical Chemistry andAmsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081 HVAmsterdamThe Netherlands
- Institute of Molecules and Materials (IMM)Radboud UniversityHeyendaalseweg 1356525 AJNijmegenThe Netherlands
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11
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Alkorta I, Thacker JCR, Popelier PLA. An interacting quantum atom study of model S N 2 reactions (X - ···CH 3 X, X = F, Cl, Br, and I). J Comput Chem 2018; 39:546-556. [PMID: 29125196 PMCID: PMC5836863 DOI: 10.1002/jcc.25098] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 09/25/2017] [Accepted: 10/17/2017] [Indexed: 12/30/2022]
Abstract
The quantum chemical topology method has been used to analyze the energetic profiles in the X- + CH3 X → XCH3 + X- SN 2 reactions, with X = F, Cl, Br, and I. The evolution of the electron density properties at the BCPs along the reaction coordinate has been analysed. The interacting quantum atoms (IQA) method has been used to evaluate the intra-atomic and interatomic energy variations along the reaction path. The different energetic terms have been examined by the relative energy gradient method and the ANANKE program, which enables automatic and unbiased IQA analysis. Four of the six most important IQA energy contributions were needed to reproduce the reaction barrier common to all reactions. The four reactions considered share many common characteristics but when X = F a number of particularities occur. © 2017 Wiley Periodicals, Inc.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3Madrid28006Spain
| | - Joseph C. R. Thacker
- Manchester Institute of Biotechnology (MIB), 131 Princess Street, M1 7DN, Great Britain, and School of Chemistry, University of Manchester, Oxford RoadManchesterM13 9PLGreat Britain
| | - Paul L. A. Popelier
- Manchester Institute of Biotechnology (MIB), 131 Princess Street, M1 7DN, Great Britain, and School of Chemistry, University of Manchester, Oxford RoadManchesterM13 9PLGreat Britain
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12
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Bouaouli S, Spielmann K, Vrancken E, Campagne JM, Gérard H. Mechanism of Enolate Transfer between Si and Cu. Chemistry 2018; 24:6617-6624. [DOI: 10.1002/chem.201800099] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Samira Bouaouli
- Sorbonne Université, CNRS; Laboratoire de Chimie Théorique, UMR 7616; 75005 Paris France
| | - Kim Spielmann
- Institut Charles Gerhardt; UMR 5253 CNRS-UM2-UM1-ENSCM 8; rue de l'Ecole Normale 34296 Montpellier Cedex 5 France
| | - Emmanuel Vrancken
- Institut Charles Gerhardt; UMR 5253 CNRS-UM2-UM1-ENSCM 8; rue de l'Ecole Normale 34296 Montpellier Cedex 5 France
| | - Jean-Marc Campagne
- Institut Charles Gerhardt; UMR 5253 CNRS-UM2-UM1-ENSCM 8; rue de l'Ecole Normale 34296 Montpellier Cedex 5 France
| | - Hélène Gérard
- Sorbonne Université, CNRS; Laboratoire de Chimie Théorique, UMR 7616; 75005 Paris France
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13
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Laloo JZA, Rhyman L, Larrañaga O, Ramasami P, Bickelhaupt FM, de Cózar A. Ion-Pair S N 2 Reaction of OH - and CH 3 Cl: Activation Strain Analyses of Counterion and Solvent Effects. Chem Asian J 2018; 13:1138-1147. [PMID: 29437289 DOI: 10.1002/asia.201800082] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 02/12/2018] [Indexed: 11/10/2022]
Abstract
We have theoretically studied the non-identity SN 2 reactions of Mn OH(n-1) +CH3 Cl (M+ =Li+ , Na+ , K+ , and MgCl+ ; n=0, 1) in the gas phase and in THF solution at the OLYP/6-31++G(d,p) level using polarizable continuum model (PCM) implicit solvation. We want to explore and understand the effect of the metal counterion M+ and solvation on the reaction profile and the stereoselectivity of these processes. To this end, we have explored the potential energy surfaces of the backside (SN 2-b) and frontside (SN 2-f) pathways. To explain the computed trends, we have carried out analyses with an extended activation strain model (ASM) of chemical reactivity that includes the treatment of solvation effects.
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Affiliation(s)
- Jalal Z A Laloo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius.,Department of Applied Chemistry, University of Johannesburg, Doornfontein Campus, Johannesburg, 2028, South Africa
| | - Olatz Larrañaga
- Departamento de Química Orgánica I, Facultad de Química, Universidad del País Vasco (UPV/EHU) and Donostia International Physics Center (DIPC), P. K. 1072, 20018, San Sebastián-Donostia, Spain
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius.,Department of Applied Chemistry, University of Johannesburg, Doornfontein Campus, Johannesburg, 2028, South Africa
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081, HV, Amsterdam, The Netherlands.,Institute of Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525, AJ, Nijmegen, The Netherlands
| | - Abel de Cózar
- Departamento de Química Orgánica I, Facultad de Química, Universidad del País Vasco (UPV/EHU) and Donostia International Physics Center (DIPC), P. K. 1072, 20018, San Sebastián-Donostia, Spain.,Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081, HV, Amsterdam, The Netherlands.,IKERBASQUE, Basque Foundation for Science, 48013, Bilbao, Spain
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14
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Liu S, Li Y, Lan Y. Mechanistic Study of the Fluoride-Induced Activation of a Kobayashi Precursor: Pseudo-SN
2 Pathway via a Pentacoordinated Silicon Ate Complex. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701249] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Song Liu
- School of Chemistry and Chemical Engineering; Chongqing University; 400030 Chongqing China
| | - Yang Li
- School of Chemistry and Chemical Engineering; Chongqing University; 400030 Chongqing China
| | - Yu Lan
- School of Chemistry and Chemical Engineering; Chongqing University; 400030 Chongqing China
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15
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Bickelhaupt FM, Houk KN. Das Distortion/Interaction‐Activation‐Strain‐Modell zur Analyse von Reaktionsgeschwindigkeiten. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201701486] [Citation(s) in RCA: 176] [Impact Index Per Article: 25.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- F. Matthias Bickelhaupt
- Department of Theoretical Chemistry und Amsterdam Center for Multiscale Modeling (ACMM) Vrije Universiteit Amsterdam De Boelelaan 1083 1081 HV Amsterdam Niederlande
- Institute of Molecules and Materials (IMM) Radboud University Heyendaalseweg 135 6525 AJ Nijmegen Niederlande
| | - Kendall N. Houk
- Department of Chemistry and Biochemistry und Department of Chemical and Biomolecular Engineering University of California Los Angeles CA 90095-1569 USA
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16
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Bickelhaupt FM, Houk KN. Analyzing Reaction Rates with the Distortion/Interaction-Activation Strain Model. Angew Chem Int Ed Engl 2017; 56:10070-10086. [PMID: 28447369 PMCID: PMC5601271 DOI: 10.1002/anie.201701486] [Citation(s) in RCA: 938] [Impact Index Per Article: 134.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Revised: 04/10/2017] [Indexed: 12/21/2022]
Abstract
The activation strain or distortion/interaction model is a tool to analyze activation barriers that determine reaction rates. For bimolecular reactions, the activation energies are the sum of the energies to distort the reactants into geometries they have in transition states plus the interaction energies between the two distorted molecules. The energy required to distort the molecules is called the activation strain or distortion energy. This energy is the principal contributor to the activation barrier. The transition state occurs when this activation strain is overcome by the stabilizing interaction energy. Following the changes in these energies along the reaction coordinate gives insights into the factors controlling reactivity. This model has been applied to reactions of all types in both organic and inorganic chemistry, including substitutions and eliminations, cycloadditions, and several types of organometallic reactions.
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Affiliation(s)
- F Matthias Bickelhaupt
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands.,Institute of Molecules and Materials (IMM), Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Kendall N Houk
- Department of Chemistry and Biochemistry and Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA, 90095-1569, USA
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17
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Koller SG, Bauer JO, Strohmann C. Selektive Si-C(sp3
)-Bindungsspaltung in (Aminomethyl)silanen durch carbanionische Nucleophile und ihr stereochemischer Verlauf. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702410] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Stephan G. Koller
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Deutschland
| | - Jonathan O. Bauer
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Deutschland
- Institut für Anorganische Chemie; Universität Regensburg; Deutschland
| | - Carsten Strohmann
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Deutschland
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18
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Koller SG, Bauer JO, Strohmann C. Selective Si−C(sp3
) Bond Cleavage in (Aminomethyl)silanes by Carbanionic Nucleophiles and Its Stereochemical Course. Angew Chem Int Ed Engl 2017; 56:7991-7994. [DOI: 10.1002/anie.201702410] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Indexed: 11/05/2022]
Affiliation(s)
- Stephan G. Koller
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Jonathan O. Bauer
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Strasse 6 44227 Dortmund Germany
- Current address: Institut für Anorganische Chemie; Universität Regensburg; Germany
| | - Carsten Strohmann
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Strasse 6 44227 Dortmund Germany
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19
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Abstract
![]()
Fundamental
principles that determine chemical reactivity and reaction
mechanisms are the very foundation of chemistry and many related fields
of science. Bimolecular nucleophilic substitutions (SN2)
are among the most common and therefore most important reaction types.
In this report, we examine the trends in the SN2 reactions
with respect to increasing electronegativity of the reaction center
by comparing the well-studied backside SN2 Cl– + CH3Cl with similar Cl– substitutions
on the isoelectronic series with the second period elements N, O,
and F in place of C. Relativistic (ZORA) DFT calculations are used
to construct the gas phase reaction potential energy surfaces (PES),
and activation strain analysis, which allows decomposition of the
PES into the geometrical strain and interaction energy, is employed
to analyze the observed trends. We find that SN2@N and
SN2@O have similar PES to the prototypical SN2@C, with the well-defined reaction complex (RC) local minima and
a central barrier, but all stationary points are, respectively, increasingly
stable in energy. The SN2@F, by contrast, exhibits only
a single-well PES with no barrier. Using the activation strain model,
we show that the trends are due to the interaction energy and originate
mainly from the decreasing energy of the empty acceptor orbital (σ*A–Cl) on the reaction center A in the order of C, N,
O, and F. The decreasing steric congestion around the central atom
is also a likely contributor to this trend. Additional decomposition
of the interaction energy using Kohn–Sham molecular orbital
(KS-MO) theory provides further support for this explanation, as well
as suggesting electrostatic energy as the primary reason for the distinct
single-well PES profile for the FCl reaction.
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Affiliation(s)
- Jan Kubelka
- Department of Chemistry, University of Wyoming , Laramie, Wyoming 82070, United States
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam , De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands.,Institute for Molecules and Materials (IMM), Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
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20
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de Paul N. Nziko V, Scheiner S. Effects of Angular Deformation on the Energetics of the S N2 Reaction. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600712] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - Steve Scheiner
- Department of Chemistry and Biochemistry; Utah State University; 84322-0300 Logan UT USA
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21
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Matsubara T, Ito T. Quantum Mechanical and Molecular Dynamics Studies of the Reaction Mechanism of the Nucleophilic Substitution at the Si Atom. J Phys Chem A 2016; 120:2636-46. [PMID: 27046773 DOI: 10.1021/acs.jpca.6b02308] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The mechanism of the nucleophilic substitution at the Si atom, SiH3Cl + Cl*(-) → SiH3Cl* + Cl(-), is examined by both quantum mechanical (QM) and molecular dynamics (MD) methods. This reaction proceeds by two steps with the inversion or retention of the configuration passing through an intermediate with the trigonal bipyramid (TBP) structure, although the conventional SN2 reaction at the C atom proceeds by one step with the inversion of the configuration passing through a transition state with the TBP structure. We followed by the QM calculations all the possible paths of the substitution reaction that undergo the TBP intermediates with the cis and trans forms produced by the frontside and backside attacks of Cl(-). As a result, it was thought that TBPcis1 produced with a high probability is readily transformed to the energetically more stable TBPtrans. This fact was also shown by the MD simulations. In order to obtain more information concerning the trajectory of Cl(-) on the dissociation from TBPtrans, which we cannot clarify on the basis of the energy profile determined by the QM method, the MD simulations with and without the water solvent were conducted and analyzed in detail. The QM-MD simulations without the water solvent revealed that the dissociation of Cl(-) from TBPtrans occurs without passing through TBPcis1'. The ONIOM-MD simulations with the water solvent further suggested that the thermal fluctuation of the water solvent significantly affects the oscillation of the kinetic and potential energies of the substrate to facilitate the isomerization of the TBP intermediate from the cis form to the trans form and the subsequent dissociation of Cl(-) from TBPtrans.
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Affiliation(s)
- Toshiaki Matsubara
- Department of Chemistry, Faculty of Science, Kanagawa University , 2946, Tsuchiya, Hiratsuka, Kanagawa 259-1293, Japan
| | - Tomoyoshi Ito
- Department of Chemistry, Faculty of Science, Kanagawa University , 2946, Tsuchiya, Hiratsuka, Kanagawa 259-1293, Japan
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22
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Bortoli M, Wolters LP, Orian L, Bickelhaupt FM. Addition-Elimination or Nucleophilic Substitution? Understanding the Energy Profiles for the Reaction of Chalcogenolates with Dichalcogenides. J Chem Theory Comput 2016; 12:2752-61. [PMID: 27096625 DOI: 10.1021/acs.jctc.6b00253] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We have quantum chemically explored the mechanism of the substitution reaction between CH3X(-) and the homo- and heterodichalcogenides CH3X'X″CH3 (X, X', X″ = S, Se, Te) using relativistic density functional theory at ZORA-OLYP/TZ2P and COSMO for simulating the effect of aqueous solvation. In the gas phase, all substitution reactions proceed via a triple-well addition-elimination mechanism that involves a stable three-center intermediate. Aqueous solvation, in some cases, switches the character of the mechanism to double-well SN2 in which the stable three-center intermediate has become a labile transition state. We rationalize reactivity trends and some puzzling aspects of these elementary reactions, in particular, vanishing activation energies and ghost three-center intermediates, using the activation strain model (ASM).
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Affiliation(s)
- Marco Bortoli
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova , Via Marzolo 1, 35129 Padova, Italy
| | - Lando P Wolters
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova , Via Marzolo 1, 35129 Padova, Italy
| | - Laura Orian
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova , Via Marzolo 1, 35129 Padova, Italy
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam , De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands.,Institute for Molecules and Materials (IMM), Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
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23
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Bauer JO, Strohmann C. Recent Progress in Asymmetric Synthesis and Application of Difunctionalized Silicon-Stereogenic Silanes. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600100] [Citation(s) in RCA: 85] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Jonathan O. Bauer
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Germany
- Department of Organic Chemistry; The Weizmann Institute of Science; P. O. Box 26 76100 Rehovot Israel
| | - Carsten Strohmann
- Anorganische Chemie; Technische Universität Dortmund; Otto-Hahn-Straße 6 44227 Dortmund Germany
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24
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Ehbets J, Lorenzen S, Mahler C, Bertermann R, Berkefeld A, Poater J, Fritz‐Langhals E, Weidner R, Bickelhaupt FM, Tacke R. Synthesis and Hydrolysis of Alkoxy(aminoalkyl)diorganylsilanes of the Formula Type R
2
(RO)Si(CH
2
)
n
NH
2
(R = Alkyl,
n
= 1–3): A Systematic Experimental and Computational Study. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Julia Ehbets
- Universität Würzburg, Institut für Anorganische Chemie, Am Hubland, 97074 Würzburg, Germany, http://www‐anorganik.chemie.uni‐wuerzburg.de
| | - Sabine Lorenzen
- Universität Würzburg, Institut für Anorganische Chemie, Am Hubland, 97074 Würzburg, Germany, http://www‐anorganik.chemie.uni‐wuerzburg.de
| | - Christoph Mahler
- Universität Würzburg, Institut für Anorganische Chemie, Am Hubland, 97074 Würzburg, Germany, http://www‐anorganik.chemie.uni‐wuerzburg.de
| | - Rüdiger Bertermann
- Universität Würzburg, Institut für Anorganische Chemie, Am Hubland, 97074 Würzburg, Germany, http://www‐anorganik.chemie.uni‐wuerzburg.de
| | - André Berkefeld
- Universität Würzburg, Institut für Anorganische Chemie, Am Hubland, 97074 Würzburg, Germany, http://www‐anorganik.chemie.uni‐wuerzburg.de
| | - Jordi Poater
- VU University Amsterdam, Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands, http://www.few.vu.nl/~bickel
- Universitat de Barcelona, Departament de Química Orgànica & Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Catalonia, Spain
| | - Elke Fritz‐Langhals
- Wacker Chemie AG, Consortium für elektrochemische Industrie, Zielstattstrasse 20, 81379 München, Germany
| | - Richard Weidner
- Wacker Chemie AG, Consortium für elektrochemische Industrie, Zielstattstrasse 20, 81379 München, Germany
| | - F. Matthias Bickelhaupt
- VU University Amsterdam, Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands, http://www.few.vu.nl/~bickel
- Radboud University Nijmegen, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Reinhold Tacke
- Universität Würzburg, Institut für Anorganische Chemie, Am Hubland, 97074 Würzburg, Germany, http://www‐anorganik.chemie.uni‐wuerzburg.de
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25
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Laloo JZA, Rhyman L, Ramasami P, Bickelhaupt FM, de Cózar A. Ion-Pair SN 2 Substitution: Activation Strain Analyses of Counter-Ion and Solvent Effects. Chemistry 2016; 22:4431-9. [PMID: 26879231 DOI: 10.1002/chem.201504456] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Indexed: 12/20/2022]
Abstract
The ion-pair SN 2 reactions of model systems MnF(n-1) +CH3Cl(M(+) =Li(+), Na(+), K(+), and MgCl(+); n=0, 1) have been quantum chemically explored by using DFT at the OLYP/6-31++G(d,p) level. The purpose of this study is threefold: 1) to elucidate how the counterion M(+) modifies ion-pair SN 2 reactivity relative to the parent reaction F(-) +CH3Cl; 2) to determine how this influences stereochemical competition between the backside and frontside attacks; and 3) to examine the effect of solvation on these ion-pair SN2 pathways. Trends in reactivity are analyzed and explained by using the activation strain model (ASM) of chemical reactivity. The ASM has been extended to treat reactivity in solution. These findings contribute to a more rational design of tailor-made substitution reactions.
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Affiliation(s)
- Jalal Z A Laloo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius. .,Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh, 11451, Saudi Arabia.
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands. .,Institute of Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
| | - Abel de Cózar
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands. .,Departamento de Química Orgánica I, Facultad de Química, Universidad del País Vasco P. K. 1072, 200880, San Sebastián-Donostia, Spain. .,IKERBASQUE, Basque Foundation for Science, 48013, Bilbao, Spain.
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26
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Sauers RR. Single Electron Transfer and SN2 Reactions: The Importance of Ionization Potential of Nucleophiles. J Chem Theory Comput 2015; 6:602-6. [PMID: 26613295 DOI: 10.1021/ct900611g] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Ronald R Sauers
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, New Brunswick, New Jersey 08903
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27
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Wolters LP, Bickelhaupt FM. The activation strain model and molecular orbital theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2015; 5:324-343. [PMID: 26753009 PMCID: PMC4696410 DOI: 10.1002/wcms.1221] [Citation(s) in RCA: 239] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 04/05/2015] [Accepted: 04/07/2015] [Indexed: 12/23/2022]
Abstract
The activation strain model is a powerful tool for understanding reactivity, or inertness, of molecular species. This is done by relating the relative energy of a molecular complex along the reaction energy profile to the structural rigidity of the reactants and the strength of their mutual interactions: ΔE(ζ) = ΔEstrain(ζ) + ΔEint(ζ). We provide a detailed discussion of the model, and elaborate on its strong connection with molecular orbital theory. Using these approaches, a causal relationship is revealed between the properties of the reactants and their reactivity, e.g., reaction barriers and plausible reaction mechanisms. This methodology may reveal intriguing parallels between completely different types of chemical transformations. Thus, the activation strain model constitutes a unifying framework that furthers the development of cross-disciplinary concepts throughout various fields of chemistry. We illustrate the activation strain model in action with selected examples from literature. These examples demonstrate how the methodology is applied to different research questions, how results are interpreted, and how insights into one chemical phenomenon can lead to an improved understanding of another, seemingly completely different chemical process. WIREs Comput Mol Sci 2015, 5:324-343. doi: 10.1002/wcms.1221.
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Affiliation(s)
- Lando P Wolters
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), VU University AmsterdamAmsterdam, The Netherlands; Dipartimento di Scienze Chimiche, Università degli Studi di PadovaPadova, Italy
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), VU University AmsterdamAmsterdam, The Netherlands; Institute of Molecules and Materials (IMM), Radboud University NijmegenNijmegen, The Netherlands
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28
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Bauer JO, Strohmann C. Stereocontrol in Nucleophilic Substitution Reactions at Silicon: The Role of Permutation in Generating Silicon-Centered Chirality. J Am Chem Soc 2015; 137:4304-7. [PMID: 25803673 DOI: 10.1021/jacs.5b00861] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jonathan O. Bauer
- Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
| | - Carsten Strohmann
- Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
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29
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Junxi L, Qiong S, Yu L, Qiang Z, Zhiyuan G. Gas-phase reaction of ClO −with CH nCl 4-n( n= 0, 1, 2, 3) and CX 3H (X = F, Cl and Br): Substituent effect from a comparative study. CAN J CHEM 2014. [DOI: 10.1139/cjc-2014-0245] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Substituent effects on reactivity are studied using the hybrid B3LYP and BHandHLYP methods of density functional theory with the aug-cc-pVDZ basis set. The chosen testing models includes two very representative reactions in chemical research, the bimolecular nucleophilic substitution (SN2) reaction and the deprotonation reaction, in which the former is represented by ClO−+ CHnCl4-n(n = 0, 1, 2, 3), and the latter is based on reactions of ClO−with CX3H (X = F, Cl, and Br). Our theoretical findings suggest that a heavier substituent X in substrate results in a higher activation energy, a slower SN2 reaction, but a faster deprotonation reaction. Those are well confirmed by some presented results from bond orders, second-order perturbative energy E(2), and activation strain model analysis. Moreover, we have further explored the reactivity difference derived from substituent effects in term of the relationships of reactive barrier with the charges transferred and the leaving-bond distance in TSs, respectively, especially the TSs in SN2 reactions. Again, the rate constants at 298–1000 K are also evaluated for the SN2 reactions presented through the transition state theory.
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Affiliation(s)
- Liang Junxi
- Gansu Key Laboratory of Environmental Friendly Composites and Biomass Utilization, College of Chemical Engineering, Northwest University for Nationalities, Lanzhou, Gansu 730030, China
| | - Su Qiong
- Gansu Key Laboratory of Environmental Friendly Composites and Biomass Utilization, College of Chemical Engineering, Northwest University for Nationalities, Lanzhou, Gansu 730030, China
| | - Li Yu
- Gansu Key Laboratory of Environmental Friendly Composites and Biomass Utilization, College of Chemical Engineering, Northwest University for Nationalities, Lanzhou, Gansu 730030, China
| | - Zhang Qiang
- Institute of Arid Meteorology, CMA; Key laboratory of Arid Climatic Change and Reducing Disaster of Gansu Province; Key Open Laboratory of Arid Climatic Change and Disaster Reduction of CMA, Lanzhou 730020, China
| | - Geng Zhiyuan
- Gansu Key Laboratory of Polymer Materials, College of Chemistry and Chemical Engineering, Key Laboratory of Eco-environment-related Polymer Materials; Ministry of Education, Northwest Normal University, Lanzhou, Gansu 730070, China
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30
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Berkefeld A, Guerra CF, Bertermann R, Troegel D, Daiß JO, Stohrer J, Bickelhaupt FM, Tacke R. Silicon α-Effect: A Systematic Experimental and Computational Study of the Hydrolysis of Cα- and Cγ-Functionalized Alkoxytriorganylsilanes of the Formula Type ROSiMe2(CH2)nX (R = Me, Et; n = 1, 3; X = Functional Group). Organometallics 2014. [DOI: 10.1021/om500073m] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- André Berkefeld
- Institut
für Anorganische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Célia Fonseca Guerra
- Department
of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling
(ACMM), VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Rüdiger Bertermann
- Institut
für Anorganische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Dennis Troegel
- Wacker Chemie AG, Consortium für elektrochemische Industrie, Zielstattstrasse 20, D-81379 München, Germany
| | - Jürgen O. Daiß
- Wacker Chemie AG, Johannes-Hess-Strasse
24, D-84489 Burghausen, Germany
| | - Jürgen Stohrer
- Wacker Chemie AG, Consortium für elektrochemische Industrie, Zielstattstrasse 20, D-81379 München, Germany
| | - F. Matthias Bickelhaupt
- Department
of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling
(ACMM), VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
- Institute
for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg
135, NL-6525 AJ Nijmegen, The Netherlands
| | - Reinhold Tacke
- Institut
für Anorganische Chemie, Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany
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31
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Soriano E, Fernández I. Allenes and computational chemistry: from bonding situations to reaction mechanisms. Chem Soc Rev 2014; 43:3041-105. [DOI: 10.1039/c3cs60457h] [Citation(s) in RCA: 140] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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32
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Fernández I, Bickelhaupt FM, Uggerud E. Reactivity in nucleophilic vinylic substitution (S(N)V):S(N)Vπ versus S(N)Vσ mechanistic dichotomy. J Org Chem 2013; 78:8574-84. [PMID: 23915397 DOI: 10.1021/jo401242f] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The intrinsic electronic factors that determine reactivity in prototypical identity nucleophilic vinylic substitution reactions, X(-) + ViX → XVi + X(-) (Vi = vinyl), have been studied by performing quantum chemical calculations (OPBE/6-311++G(d,p)). Of the two limiting reaction types envisaged--the S(N)Vπ and S(N)Vσ mechanisms--the former is preferred for most combinations of nucleophiles and substrates, except for the combination of unactivated substrates and poor nucleophiles, as seen for the much studied reactions Cl(-) + CH2CHCl and Br(-) + CH2CHBr. It was found that periodic trends for S(N)Vπ are essentially the same as those previously reported for nucleophilic aromatic substitution, S(N)Ar, while intrinsic S(N)Vσ nucleophilicity parallels aliphatic S(N)2. It is therefore concluded that S(N)V reactivity in general can be understood in terms of this mechanistic dichotomy. Furthermore, a few representative reactions were analyzed applying two complementary schemes for energy decomposition analysis.
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Affiliation(s)
- Israel Fernández
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040-Madrid, Spain
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33
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Zijlstra H, León T, de Cózar A, Guerra CF, Byrom D, Riera A, Verdaguer X, Bickelhaupt FM. Stereodivergent SN2@P Reactions of Borane Oxazaphospholidines: Experimental and Theoretical Studies. J Am Chem Soc 2013; 135:4483-91. [DOI: 10.1021/ja400208t] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hester Zijlstra
- Department of Theoretical Chemistry,
Amsterdam Center for Multiscale Modeling (ACMM), VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam,
The Netherlands
| | - Thierry León
- Institute for Research in Biomedicine (IRB Barcelona), C/Baldiri Reixac 10,
E-08028 Barcelona, Spain
| | - Abel de Cózar
- Department of Theoretical Chemistry,
Amsterdam Center for Multiscale Modeling (ACMM), VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam,
The Netherlands
| | - Célia Fonseca Guerra
- Department of Theoretical Chemistry,
Amsterdam Center for Multiscale Modeling (ACMM), VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam,
The Netherlands
| | - Daniel Byrom
- Institute for Research in Biomedicine (IRB Barcelona), C/Baldiri Reixac 10,
E-08028 Barcelona, Spain
| | - Antoni Riera
- Institute for Research in Biomedicine (IRB Barcelona), C/Baldiri Reixac 10,
E-08028 Barcelona, Spain
- Departament de Química
Orgànica, Universitat de Barcelona, Martí i Franqués, 1, E-08028 Barcelona, Spain
| | - Xavier Verdaguer
- Institute for Research in Biomedicine (IRB Barcelona), C/Baldiri Reixac 10,
E-08028 Barcelona, Spain
- Departament de Química
Orgànica, Universitat de Barcelona, Martí i Franqués, 1, E-08028 Barcelona, Spain
| | - F. Matthias Bickelhaupt
- Department of Theoretical Chemistry,
Amsterdam Center for Multiscale Modeling (ACMM), VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam,
The Netherlands
- Institute of Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, NL-6525
AJ Nijmegen, The Netherlands
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34
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Fernández I, Bickelhaupt FM, Cossío FP. Type-I dyotropic reactions: understanding trends in barriers. Chemistry 2012; 18:12395-403. [PMID: 22915249 DOI: 10.1002/chem.201200897] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2012] [Indexed: 11/10/2022]
Abstract
To understand the factors that control the activation barrier of type-I 1,2-dyotropic reactions (X-EH(2)-CH(2)-X*→X*-EH(2)-CH(2)-X, with E=C and Si, X=H, CH(3), SiH(3), F to I) and trends therein as a function of the migrating groups X, we have explored ten archetypal model reactions of this class using relativistic density functional theory (DFT) at ZORA-OLYP/TZ2P. The main trends in reactivity are rationalized using the activation strain model of chemical reactivity, which had to be extended from bimolecular to unimolecular reactions. Thus, the above type-I dyotropic reactions can be conceived as a relative rotation of the CH(2)CH(2) and [X···X] fragments in X-CH(2)-CH(2)-X. The picture that emerges from these analyses is that reduced C-X bonding in the transition state is the origin of the reaction barrier. Also the trends in reactivity on variation of X can be understood in terms of how sensitive the C-X interaction is towards adopting the transition-state geometry. A valence bond analysis complements the analyses and confirms the picture emerging from the activation strain model.
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Affiliation(s)
- Israel Fernández
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense, 28040 Madrid, Spain.
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35
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A Phosphorus/Aluminum-Based Frustrated Lewis Pair as an Ion Pair Receptor: Alkali Metal Hydride Adducts and Phase-Transfer Catalysis. Angew Chem Int Ed Engl 2012; 51:5911-4. [DOI: 10.1002/anie.201201855] [Citation(s) in RCA: 90] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2012] [Indexed: 11/07/2022]
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36
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Appelt C, Slootweg JC, Lammertsma K, Uhl W. A Phosphorus/Aluminum-Based Frustrated Lewis Pair as an Ion Pair Receptor: Alkali Metal Hydride Adducts and Phase-Transfer Catalysis. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201201855] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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37
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Kretschmer R, Schlangen M, Kaupp M, Schwarz H. Neutral Metal Atoms Acting as a Leaving Group in Gas-Phase SN2 Reactions: M(CH3)+ + NH3 → CH3NH3+ + M (M = Zn, Cd, Hg). Organometallics 2012. [DOI: 10.1021/om300116c] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Robert Kretschmer
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
| | - Maria Schlangen
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
| | - Martin Kaupp
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
| | - Helmut Schwarz
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
- Chemistry Department, Faculty
of Science, King Abdulaziz University,
Jeddah 21589, Saudi Arabia
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38
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Liang JX, Geng ZY, Wang YC. Density functional study of S(N) 2 substitution reactions for CH(3) Cl + CX(1) X(2•-) (X(1) X(2) = HH, HF, HCl, HBr, HI, FF, ClCl, BrBr, and II). J Comput Chem 2012; 33:595-606. [PMID: 22241464 DOI: 10.1002/jcc.21972] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2010] [Revised: 08/29/2011] [Accepted: 09/23/2011] [Indexed: 11/08/2022]
Abstract
A systematic investigation on the S(N) 2 displacement reactions of nine carbene radical anions toward the substrate CH(3) Cl has been theoretically carried out using the popular density functional theory functional BHandHLYP level with different basis sets 6-31+G (d, p)/relativistic effective core potential (RECP), 6-311++G (d, p)/RECP, and aug-cc-pVTZ/RECP. The studied models are CX(1) X(2•-) + CH(3) Cl → X(2) X(1) CH(3) C(•) + Cl(-) , with CX(1) X(2•-) = CH(2) (•-) , CHF(•-) , CHCl(•-) , CHBr(•-) , CHI(•-) , CF(2) (•-) , CCl(2) (•-) , CBr(2) (•-) , and CI(2) (•-) . The main results are proposed as follows: (a) Based on natural bond orbital (NBO), proton affinity (PA), and ionization energy (IE) analysis, reactant CH(2) (•-) should be a strongest base among the anion-containing species (CX(1) X(2•-) ) and so more favorable nucleophile. (b) Regardless of frontside attacking pathway or backside one, the S(N) 2 reaction starts at an identical precomplex whose formation with no barrier. (c) The back-S(N) 2 pathway is much more preferred than the front-S(N) 2 one in terms of the energy gaps [ΔE cent≠(front)-ΔE cent≠(back)], steric demand, NBO population analysis. Thus, the back-S(N) 2 reaction was discussed in detail. On the one hand, based on the energy barriers (ΔE cent≠ and ΔE ovr≠) analysis, we have strongly affirmed that the stabilization of back attacking transition states (b-TSs) presents increase in the order: b-TS-CI(2) < b-TS-CBr(2) < b-TS-CCl(2) < b-TS-CHI < b-TS-CHBr < b-TS-CHCl < b-TS-CF(2) < b-TS-CHF < b-TS-CH(2) . On the other hand, depended on discussions of the correlations of ΔE ovr≠ with influence factors (PA, IE, bond order, and ΔE def≠), we have explored how and to what extent they affect the reactions. Moreover, we have predicted that the less size of substitution (α-atom) required for the gas-phase reaction with α-nucleophile is related to the α-effect and estimated that the reaction with the stronger PA nucleophile, holding the lighter substituted atom, corresponds to the greater exothermicity given out from reactants to products.
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Affiliation(s)
- Jun-Xi Liang
- College of Chemical Engineering, Northwest University for Nationalities, Lanzhou, Gansu 730030, PR China
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39
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Vlasov VM. Towards mechanisms of bimolecular nucleophilic reactions in solution-probing the variation of the activation parameters in the reactions of aromatic compounds. J PHYS ORG CHEM 2011. [DOI: 10.1002/poc.1912] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Vladislav M. Vlasov
- N. N. Vorozhtsov Novosibirsk Institute of Organic Chemistry; Siberian Branch of the Russian Academy of Sciences; 630090 Novosibirsk Lavrentjev Ave., 9 Russia
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40
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Couzijn EPA, Slootweg JC, Ehlers AW, Lammertsma K. Stereomutation of Pentavalent Compounds: Validating the Berry Pseudorotation, Redressing Ugi’s Turnstile Rotation, and Revealing the Two- and Three-Arm Turnstiles. J Am Chem Soc 2010; 132:18127-40. [DOI: 10.1021/ja105306s] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Erik P. A. Couzijn
- Department of Chemistry and Pharmaceutical Sciences,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, 1081
HV Amsterdam, The Netherlands, and Laboratorium für Organische
Chemie, ETH Zürich, Wolfgang-Pauli-strasse 10, CH-8093 Zürich,
Switzerland
| | - J. Chris Slootweg
- Department of Chemistry and Pharmaceutical Sciences,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, 1081
HV Amsterdam, The Netherlands, and Laboratorium für Organische
Chemie, ETH Zürich, Wolfgang-Pauli-strasse 10, CH-8093 Zürich,
Switzerland
| | - Andreas W. Ehlers
- Department of Chemistry and Pharmaceutical Sciences,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, 1081
HV Amsterdam, The Netherlands, and Laboratorium für Organische
Chemie, ETH Zürich, Wolfgang-Pauli-strasse 10, CH-8093 Zürich,
Switzerland
| | - Koop Lammertsma
- Department of Chemistry and Pharmaceutical Sciences,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, 1081
HV Amsterdam, The Netherlands, and Laboratorium für Organische
Chemie, ETH Zürich, Wolfgang-Pauli-strasse 10, CH-8093 Zürich,
Switzerland
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41
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Donald KJ, Wittmaack BK, Crigger C. Tuning σ-Holes: Charge Redistribution in the Heavy (Group 14) Analogues of Simple and Mixed Halomethanes Can Impose Strong Propensities for Halogen Bonding. J Phys Chem A 2010; 114:7213-22. [DOI: 10.1021/jp102856v] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kelling J. Donald
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173
| | - Bernard K. Wittmaack
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173
| | - Chad Crigger
- Department of Chemistry, Gottwald Center for the Sciences, University of Richmond, Richmond, Virginia 23173
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42
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van Zeist WJ, Bickelhaupt FM. The activation strain model of chemical reactivity. Org Biomol Chem 2010; 8:3118-27. [PMID: 20490400 DOI: 10.1039/b926828f] [Citation(s) in RCA: 535] [Impact Index Per Article: 38.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Herein, we provide an account of the activation strain model of chemical reactivity and its recent applications. In this model, the potential energy surface DeltaE(zeta) along the reaction coordinate zeta is decomposed into the strain DeltaE(strain)(zeta) of the increasingly deformed reactants plus the interaction DeltaE(int)(zeta) between these deformed reactants, i.e., DeltaE(zeta) = DeltaE(strain)(zeta) + DeltaE(int)(zeta). The purpose of this fragment-based approach is to arrive at a qualitative understanding, based on accurate calculations, of the trends in activation barriers and transition-state geometries (e.g., early or late along the reaction coordinate) in terms of the reactants' properties. The usage of the activation strain model is illustrated by a number of concrete applications, by us and others, in the fields of catalysis and organic chemistry.
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Affiliation(s)
- Willem-Jan van Zeist
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling, VU University, De Boelelaan 1083, NL-1081 HV, Amsterdam, The Netherlands
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43
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Krenske EH, Pryor WA, Houk KN. Mechanism of S(H)2 reactions of disulfides: frontside vs backside, stepwise vs concerted. J Org Chem 2009; 74:5356-60. [PMID: 19548657 DOI: 10.1021/jo900834m] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Density functional theory calculations indicate that the S(H)2 reactions of disulfides with alkyl or aryl radicals take place via concerted backside displacement. The activation energies for reactions of Me* with RSSR (R = Me, Et, (i)Pr, (t)Bu) increase with the size of R, since larger R groups prevent the formation of an ideal geometry for SOMO-LUMO overlap. Frontside transition states can also be located, but these lie at least 11 kcal mol(-1) above the corresponding backside transition states.
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Affiliation(s)
- Elizabeth H Krenske
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, USA
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44
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Horvat SM, Schiesser CH. Ab Initio and DFT Study of Homolytic Substitution Reactions of Acyl Radicals at Silicon, Germanium, and Tin. Organometallics 2009. [DOI: 10.1021/om801016x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sonia M. Horvat
- School of Chemistry, The University of Melbourne, Victoria, Australia, 3010, and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Victoria, Australia, 3010
| | - Carl H. Schiesser
- School of Chemistry, The University of Melbourne, Victoria, Australia, 3010, and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Victoria, Australia, 3010
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45
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Weickgenannt A, Oestreich M. Potassiumtert-Butoxide-Catalyzed Dehydrogenative SiO Coupling: Reactivity Pattern and Mechanism of an Underappreciated Alcohol Protection. Chem Asian J 2009; 4:406-10. [DOI: 10.1002/asia.200800426] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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46
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Couzijn EPA, van den Engel DWF, Slootweg JC, de Kanter FJJ, Ehlers AW, Schakel M, Lammertsma K. Configurationally Rigid Pentaorganosilicates. J Am Chem Soc 2009; 131:3741-51. [PMID: 19231812 DOI: 10.1021/ja809154g] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Erik P. A. Couzijn
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Daniël W. F. van den Engel
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - J. Chris Slootweg
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Frans J. J. de Kanter
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Andreas W. Ehlers
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Marius Schakel
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Koop Lammertsma
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
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