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Coenye T, Ahonen M, Anderson S, Cámara M, Chundi P, Fields M, Foidl I, Gnimpieba EZ, Griffin K, Hinks J, Loka AR, Lushbough C, MacPhee C, Nater N, Raval R, Slater-Jefferies J, Teo P, Wilks S, Yung M, Webb JS. Global challenges and microbial biofilms: Identification of priority questions in biofilm research, innovation and policy. Biofilm 2024; 8:100210. [PMID: 39221168 PMCID: PMC11364012 DOI: 10.1016/j.bioflm.2024.100210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 07/01/2024] [Accepted: 07/02/2024] [Indexed: 09/04/2024] Open
Abstract
Priority question exercises are increasingly used to frame and set future research, innovation and development agendas. They can provide an important bridge between the discoveries, data and outputs generated by researchers, and the information required by policy makers and funders. Microbial biofilms present huge scientific, societal and economic opportunities and challenges. In order to identify key priorities that will help to advance the field, here we review questions from a pool submitted by the international biofilm research community and from practitioners working across industry, the environment and medicine. To avoid bias we used computational approaches to group questions and manage a voting and selection process. The outcome of the exercise is a set of 78 unique questions, categorized in six themes: (i) Biofilm control, disruption, prevention, management, treatment (13 questions); (ii) Resistance, persistence, tolerance, role of aggregation, immune interaction, relevance to infection (10 questions); (iii) Model systems, standards, regulatory, policy education, interdisciplinary approaches (15 questions); (iv) Polymicrobial, interactions, ecology, microbiome, phage (13 questions); (v) Clinical focus, chronic infection, detection, diagnostics (13 questions); and (vi) Matrix, lipids, capsule, metabolism, development, physiology, ecology, evolution environment, microbiome, community engineering (14 questions). The questions presented are intended to highlight opportunities, stimulate discussion and provide focus for researchers, funders and policy makers, informing future research, innovation and development strategy for biofilms and microbial communities.
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Affiliation(s)
- Tom Coenye
- Laboratory of Pharmaceutical Microbiology, Ghent University, Belgium
- ESCMID Study Group on Biofilms (ESGB), Basel, Switzerland
| | - Merja Ahonen
- Satakunta University of Applied Sciences, Finland
| | - Skip Anderson
- Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA
| | - Miguel Cámara
- National Biofilms Innovation Centre, University of Nottingham Biodiscovery Institute, School of Life Sciences, University of Nottingham, Nottingham, UK
| | | | - Matthew Fields
- Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA
| | - Ines Foidl
- National Biofilms Innovation Centre, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | | | - Kristen Griffin
- Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA
| | - Jamie Hinks
- Nanyang Technological University, Singapore
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Singapore
| | | | | | - Cait MacPhee
- National Biofilms Innovation Centre, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - Natasha Nater
- National Biofilms Innovation Centre, School of Biological Sciences, University of Southampton, Southampton, UK
| | - Rasmita Raval
- National Biofilms Innovation Centre, Open Innovation Hub for Antimicrobial Surfaces, Department of Chemistry, University of Liverpool, Liverpool, UK
| | - Jo Slater-Jefferies
- National Biofilms Innovation Centre, School of Biological Sciences, University of Southampton, Southampton, UK
| | - Pauline Teo
- Nanyang Technological University, Singapore
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Singapore
| | - Sandra Wilks
- National Biofilms Innovation Centre, School of Biological Sciences, University of Southampton, Southampton, UK
| | - Maria Yung
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Singapore
| | | | - Jeremy S. Webb
- National Biofilms Innovation Centre, School of Biological Sciences, University of Southampton, Southampton, UK
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Huisman KT, Fortunato L, Vrouwenvelder JS, Blankert B. Automated image processing algorithm for 3D OCT images of fouling in spacer-filled membrane filtration channels. MethodsX 2024; 13:102871. [PMID: 39157813 PMCID: PMC11327942 DOI: 10.1016/j.mex.2024.102871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Accepted: 07/18/2024] [Indexed: 08/20/2024] Open
Abstract
OCT imaging is an important technique to study fouling in spacer-filled channels of reverse osmosis systems for seawater desalination. However, OCT imaging of membrane filtration channels with feed spacers is challenging because the spacer material can be (partly) transparent, making it difficult to detect and possibly mistaken for fouling, and the longer optical pathway through the spacer material distorts the image below the spacer. This study presents an automated 3D OCT image processing method in MATLAB for visualization and quantification of biofouling in spacer-filled channels. First, a spacer template of arbitrary size and rotation was generated from a CT scan of the feed spacer. Second, background noise and file size were reduced by representing the OCT image with a list of discrete reflectors. Finally, the spacer template was overlayed with the feed spacer in the 3D OCT image, enabling automated visualization of the feed spacer and correction of the distortions. Moreover, the method allows the selection of datasets with the same location relative to the position of the spacer, enabling systematic comparison between datasets and quantitative analysis.•A spacer template of arbitrary size and rotation was generated from a CT scan.•The background noise was removed, and the file size was reduced by representing the OCT dataset with a list of discrete reflectors.•The spacer template was overlayed with the feed spacer in the 3D OCT image.
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Affiliation(s)
- Kees Theo Huisman
- Water Desalination and Reuse Center, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
- Environmental Science and Engineering Program, Biological and Environmental Science & Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
- College of Science and Engineering, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
| | - Luca Fortunato
- Water Desalination and Reuse Center, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
- MANN+HUMMEL Water & Fluid Solutions S.p.A., Italy
| | - Johannes S. Vrouwenvelder
- Water Desalination and Reuse Center, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
- Environmental Science and Engineering Program, Biological and Environmental Science & Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Bastiaan Blankert
- Water Desalination and Reuse Center, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
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Klein EM, Heintz H, Wurst R, Schuldt S, Hähl H, Jacobs K, Gescher J. Comparative analysis of the influence of BpfA and BpfG on biofilm development and current density in Shewanella oneidensis under oxic, fumarate- and anode-respiring conditions. Sci Rep 2024; 14:23174. [PMID: 39369013 DOI: 10.1038/s41598-024-73474-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Accepted: 09/17/2024] [Indexed: 10/07/2024] Open
Abstract
Biofilm formation by Shewanella oneidensis has been extensively studied under oxic conditions; however, relatively little is known about biofilm formation under anoxic conditions and how biofilm architecture and composition can positively influence current generation in bioelectrochemical systems. In this study, we utilized a recently developed microfluidic biofilm analysis setup with automated 3D imaging to investigate the effects of extracellular electron acceptors and synthetic modifications to the extracellular polymeric matrix on biofilm formation. Our results with the wild type strain demonstrate robust biofilm formation even under anoxic conditions when fumarate is used as the electron acceptor. However, this pattern shifts when a graphite electrode is employed as the electron acceptor, resulting in biofilm formation falling below the detection limit of the optical coherence tomography imaging system. To manipulate biofilm formation, we aimed to express BpfG with a single amino acid substitution in the catalytic center (C116S) and to overexpress bpfA. Our analyses indicate that, under oxic conditions, overarching mechanisms predominantly influence biofilm development, rather than the specific mutations we investigated. Under anoxic conditions, the bpfG mutation led to a quantitative increase in biofilm formation, but both strains exhibited significant qualitative changes in biofilm architecture compared to the controls. When an anode was used as the sole electron acceptor, both the bpfA and bpfG mutations positively impacted mean current density, yielding a 1.8-fold increase for each mutation.
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Affiliation(s)
- Edina Marlen Klein
- Institute of Technical Microbiology, University of Technology Hamburg, 21073, Hamburg, Germany
| | - Hannah Heintz
- Experimental Physics, Center for Biophysics, Saarland University, 66123, Saarbrücken, Germany
| | - René Wurst
- Institute of Technical Microbiology, University of Technology Hamburg, 21073, Hamburg, Germany
| | - Simon Schuldt
- Institute of Technical Microbiology, University of Technology Hamburg, 21073, Hamburg, Germany
| | - Hendrik Hähl
- Experimental Physics, Center for Biophysics, Saarland University, 66123, Saarbrücken, Germany
| | - Karin Jacobs
- Experimental Physics, Center for Biophysics, Saarland University, 66123, Saarbrücken, Germany
- Max Planck School Matter to Life, 69120, Heidelberg, Germany
| | - Johannes Gescher
- Institute of Technical Microbiology, University of Technology Hamburg, 21073, Hamburg, Germany.
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4
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Weiler J, Edel M, Gescher J. Biofilms for Production of Chemicals and Energy. Annu Rev Chem Biomol Eng 2024; 15:361-387. [PMID: 38382126 DOI: 10.1146/annurev-chembioeng-100522-110939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
The twenty-first century will be the century of biology. This is not only because of breakthrough advances in molecular biology tools but also because we need to reinvent our economy based on the biological principles of energy efficiency and sustainability. Consequently, new tools for production routines must be developed to help produce platform chemicals and energy sources based on sustainable resources. In this context, biofilm-based processes have the potential to impact future production processes, because they can be carried out continuously and with robust stationary biocatalysts embedded in an extracellular matrix with different properties. We review productive biofilm systems used for heterotrophic and lithoautotrophic production and attempt to identify fundamental reasons why they may be particularly suitable as future production systems.
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Affiliation(s)
- Janek Weiler
- Institute of Technical Microbiology, Hamburg University of Technology, Hamburg, Germany;
| | - Miriam Edel
- Institute of Technical Microbiology, Hamburg University of Technology, Hamburg, Germany;
| | - Johannes Gescher
- Institute of Technical Microbiology, Hamburg University of Technology, Hamburg, Germany;
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5
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Klein E, Wurst R, Rehnlund D, Gescher J. Elucidating the development of cooperative anode-biofilm-structures. Biofilm 2024; 7:100193. [PMID: 38601817 PMCID: PMC11004076 DOI: 10.1016/j.bioflm.2024.100193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 03/13/2024] [Accepted: 03/21/2024] [Indexed: 04/12/2024] Open
Abstract
Microbial electrochemical systems are a highly versatile platform technology with a particular focus on the interplay of chemical and electrical energy conversion and offer immense potential for a sustainable bioeconomy. The industrial realization of this potential requires a critical focus on biofilm optimization if performance is to be controlled over a long period of time. Moreover, the aspect and influence of cooperativity has to be addressed as many applied anodic bioelectrochemical systems will most likely be operated with a diversity of interacting microbial species. Hence, the aim of this study was to analyze how interspecies dependence and cooperativity of a model community influence the development of anodic biofilms. To investigate biofilm activity in a spatially resolved manner, a microfluidic bioelectrochemical flow cell was developed that can be equipped with user-defined electrode materials and operates under laminar flow conditions. With this infrastructure, the development of single and co-culture biofilms of the two model organisms Shewanella oneidensis and Geobacter sulfurreducens on graphite electrodes was monitored by optical coherence tomography analysis. The interdependence in the co-culture biofilm was achieved by feeding the community with lactate, which is converted by S. oneidensis into acetate, which in turn serves as substrate for G. sulfurreducens. The results show that co-cultivation resulted in the formation of denser biofilms than in single culture. Moreover, we hypothesize that S. oneidensis in return utilizes the conductive biofilm matrix build by G. sulfurreducens for direct interspecies electron transfer (DIET) to the anode. FISH analysis revealed that the biofilms consisted of approximately two-thirds G. sulfurreducens cells, which most likely formed a conductive 3D network throughout the biofilm matrix, in which evenly distributed tubular S. oneidensis colonies were embedded without direct contact to the anode surface. Live/dead staining shows that the outermost biofilm contained almost exclusively dead cells (98 %), layers near the anode contained 45-56 % and the entire biofilm contained 82 % live cells. Our results exemplify how the architecture of the exoelectrogenic biofilm dynamically adapts to the respective process conditions.
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Affiliation(s)
- Edina Klein
- Institute of Technical Microbiology, University of Technology Hamburg, Hamburg, Germany
| | - René Wurst
- Institute of Technical Microbiology, University of Technology Hamburg, Hamburg, Germany
| | - David Rehnlund
- Department of Chemistry – Ångström Laboratory, Uppsala University, Box 538, SE-751 21, Uppsala, Sweden
| | - Johannes Gescher
- Institute of Technical Microbiology, University of Technology Hamburg, Hamburg, Germany
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6
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Liang S, Fu K, Li X, Wang Z. Unveiling the spatiotemporal dynamics of membrane fouling: A focused review on dynamic fouling characterization techniques and future perspectives. Adv Colloid Interface Sci 2024; 328:103179. [PMID: 38754212 DOI: 10.1016/j.cis.2024.103179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 03/12/2024] [Accepted: 05/03/2024] [Indexed: 05/18/2024]
Abstract
Membrane technology has emerged as a crucial method for obtaining clean water from unconventional sources in the face of water scarcity. It finds wide applications in wastewater treatment, advanced treatment, and desalination of seawater and brackish water. However, membrane fouling poses a huge challenge that limits the development of membrane-based water treatment technologies. Characterizing the dynamics of membrane fouling is crucial for understanding its development, mechanisms, and effective mitigation. Instrumental techniques that enable in situ or real-time characterization of the dynamics of membrane fouling provide insights into the temporal and spatial evolution of fouling, which play a crucial role in understanding the fouling mechanism and the formulation of membrane control strategies. This review consolidates existing knowledge about the principal advanced instrumental analysis technologies employed to characterize the dynamics of membrane fouling, in terms of membrane structure, morphology, and intermolecular forces. Working principles, applications, and limitations of each technique are discussed, enabling researchers to select appropriate methods for their specific studies. Furthermore, prospects for the future development of dynamic characterization techniques for membrane fouling are discussed, underscoring the need for continued research and innovation in this field to overcome the challenges posed by membrane fouling.
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Affiliation(s)
- Shuling Liang
- School of Environmental Science and Engineering, Shanghai Institute of Pollution Control and Ecological Security, State Key Laboratory of Pollution Control and Resource Reuse, Tongji University, Shanghai 200092, China
| | - Kunkun Fu
- School of Aerospace Engineering and Applied Mechanics, Tongji University, Shanghai 200092, China
| | - Xuesong Li
- School of Environmental Science and Engineering, Shanghai Institute of Pollution Control and Ecological Security, State Key Laboratory of Pollution Control and Resource Reuse, Tongji University, Shanghai 200092, China.
| | - Zhiwei Wang
- School of Environmental Science and Engineering, Shanghai Institute of Pollution Control and Ecological Security, State Key Laboratory of Pollution Control and Resource Reuse, Tongji University, Shanghai 200092, China
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7
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Hu H, Xu F, Wang R, Zhou C, Li N, Shao S. Achieving zero fouling in the ultrafiltration for secondary water supply systems in the absence of residual chlorine. WATER RESEARCH 2024; 253:121281. [PMID: 38364461 DOI: 10.1016/j.watres.2024.121281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/31/2024] [Accepted: 02/05/2024] [Indexed: 02/18/2024]
Abstract
Ultrafiltration (UF) technology is widely used in secondary water supply systems (SWSS) to provide high-quality drinking water. However, the challenge of severe membrane fouling, which leads to frequent cleaning requirements, makes UF maintenance intensive. In this study, we tried to validate the feasibility of achieving zero fouling without the need for cleaning in the UF for SWSS, i.e., the fouling resistance can be maintained for a very long time without any increase. We operated dead-end UF systems at different fluxes, both with and without residual chlorine, and monitored the formation of fouling layers during filtration. The results demonstrated the successful achievement of zero fouling under a flux of 10 L/(m2 h) in the absence of chlorine, evidenced by no increase in transmembrane pressure for three months. This zero-fouling phenomenon was attributed to the formation of a self-regulating biofouling layer. This biofouling layer could degrade the deposited foulants and featured a loose morphology, facilitated by microbial activities in the cake layer. Although residual chlorine reduced the fouling rate by half at a flux of 30 L/(m2 h), it hindered the achievement of zero fouling at the lower flux of 10 L/(m2 h), due to its inhibitory effect on microbial activity. Intermittent operation of UF was effective in achieving zero fouling at higher fluxes (e.g., 30 L/(m2 h)). This benefit was primarily ascribed to the biodegradation of accumulated foulants and the expansion of biofouling layer during the pause of the intermittent filtration, which prompted the formation of biofouling layers with loose structure and balanced composition. To the best of our knowledge, this study is the first attempt to achieve zero fouling in UF for SWSS, and the findings may offer valuable insights for the development of cleaning-free and low-maintenance membrane processes.
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Affiliation(s)
- Huizhi Hu
- Faculty of Resources and Environmental Science, Hubei University, Wuhan, 430062, PR China
| | - Fang Xu
- Faculty of Resources and Environmental Science, Hubei University, Wuhan, 430062, PR China
| | - Rui Wang
- Faculty of Resources and Environmental Science, Hubei University, Wuhan, 430062, PR China
| | - Chu Zhou
- School of Civil Engineering, Wuhan University, Wuhan, 430072, PR China
| | - Na Li
- School of Civil Engineering, Wuhan University, Wuhan, 430072, PR China
| | - Senlin Shao
- School of Civil Engineering, Wuhan University, Wuhan, 430072, PR China.
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8
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Dzofou Ngoumelah D, Heggeset TMB, Haugen T, Sulheim S, Wentzel A, Harnisch F, Kretzschmar J. Effect of model methanogens on the electrochemical activity, stability, and microbial community structure of Geobacter spp. dominated biofilm anodes. NPJ Biofilms Microbiomes 2024; 10:17. [PMID: 38443373 PMCID: PMC10915144 DOI: 10.1038/s41522-024-00490-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 02/20/2024] [Indexed: 03/07/2024] Open
Abstract
Combining anaerobic digestion (AD) and microbial electrochemical technologies (MET) in AD-MET holds great potential. Methanogens have been identified as one cause of decreased electrochemical activity and deterioration of Geobacter spp. biofilm anodes. A better understanding of the different interactions between methanogenic genera/species and Geobacter spp. biofilms is needed to shed light on the observed reduction in electrochemical activity and stability of Geobacter spp. dominated biofilms as well as observed changes in microbial communities of AD-MET. Here, we have analyzed electrochemical parameters and changes in the microbial community of Geobacter spp. biofilm anodes when exposed to three representative methanogens with different metabolic pathways, i.e., Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. M. barkeri negatively affected the performance and stability of Geobacter spp. biofilm anodes only in the initial batches. In contrast, M. formicicum did not affect the stability of Geobacter spp. biofilm anodes but caused a decrease in maximum current density of ~37%. M. soehngenii induced a coloration change of Geobacter spp. biofilm anodes and a decrease in the total transferred charge by ~40%. Characterization of biofilm samples after each experiment by 16S rRNA metabarcoding, whole metagenome nanopore sequencing, and shotgun sequencing showed a higher relative abundance of Geobacter spp. after exposure to M. barkeri as opposed to M. formicicum or M. soehngenii, despite the massive biofilm dispersal observed during initial exposure to M. barkeri.
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Affiliation(s)
- Daniel Dzofou Ngoumelah
- DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH (German Biomass Research Centre), Department of Biochemical Conversion, 04347, Leipzig, Germany
| | | | - Tone Haugen
- SINTEF Industry, Department of Biotechnology and Nanomedicine, 7034, Trondheim, Norway
| | - Snorre Sulheim
- SINTEF Industry, Department of Biotechnology and Nanomedicine, 7034, Trondheim, Norway
| | - Alexander Wentzel
- SINTEF Industry, Department of Biotechnology and Nanomedicine, 7034, Trondheim, Norway
| | - Falk Harnisch
- Helmholtz Centre for Environmental Research - UFZ, Department of Microbial Biotechnology, 04318, Leipzig, Germany
| | - Jörg Kretzschmar
- DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH (German Biomass Research Centre), Department of Biochemical Conversion, 04347, Leipzig, Germany.
- Zittau/Görlitz University of Applied Sciences, Faculty of Natural and Environmental Sciences, 02763, Zittau, Germany.
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9
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Narciso DAC, Pereira A, Dias NO, Monteiro M, Melo LF, Martins FG. 3D Optical Coherence Tomography image processing in BISCAP: characterization of biofilm structure and properties. Bioinformatics 2024; 40:btae041. [PMID: 38265243 PMCID: PMC10868339 DOI: 10.1093/bioinformatics/btae041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 12/24/2023] [Accepted: 01/19/2024] [Indexed: 01/25/2024] Open
Abstract
MOTIVATION BISCAP is a state-of-the-art tool for automatically characterizing biofilm images obtained from Optical Coherence Tomography. Limited availability of other software tools is reported in the field. BISCAP's first version processes 2D images only. Processing 3D images is a problem of greater scientific relevance since it deals with the entire structure of biofilms instead of their 2D slices. RESULTS Building on the image-processing principles and algorithms proposed earlier for 2D images, these were adapted to the 3D case, and a more general implementation of BISCAP was developed. The primary goal concerns the extension of the initial methodology to incorporate the depth axis in 3D images; multiple improvements were also made to boost computational performance. The calculation of structural properties and visual outputs was extended to offer new insights into the 3D structure of biofilms. BISCAP was tested using 3D images of biofilms with different morphologies, consistently delivering accurate characterizations of 3D structures in a few minutes using standard laptop machines. Low user dependency is required for image analysis. AVAILABILITY AND IMPLEMENTATION BISCAP is available from https://github.com/diogonarciso/BISCAP. All images used in the tutorials and the validation examples are available from https://web.fe.up.pt/∼fgm/biscap3d.
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Affiliation(s)
- Diogo A C Narciso
- CERENA—Centro Recursos Naturais e Ambiente, Department of Chemical Engineering, Instituto Superior Técnico, University of Lisbon, 1049-001 Lisbon, Portugal
| | - Ana Pereira
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
| | - Nuno O Dias
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
| | - Manuel Monteiro
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
| | - Luis F Melo
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
| | - Fernando G Martins
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto, Porto 4200-465, Portugal
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10
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Wang Z, Ishii S, Novak PJ. Quantification of depth-dependent microbial growth in encapsulated systems. Microb Biotechnol 2023; 16:2094-2104. [PMID: 37750468 PMCID: PMC10616645 DOI: 10.1111/1751-7915.14341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 08/26/2023] [Accepted: 09/01/2023] [Indexed: 09/27/2023] Open
Abstract
Encapsulated systems have been widely used in environmental applications to selectively retain and protect microorganisms. The permeable matrix used for encapsulation, however, limits the accessibility of existing analytical methods to study the behaviour of the encapsulated microorganisms. Here, we present a novel method that overcomes these limitations and enables direct observation and enumeration of encapsulated microbial colonies over a range of spatial and temporal scales. The method involves embedding, cross-sectioning, and analysing the system via fluorescence in situ hybridization and retains the structure of encapsulants and the morphology of encapsulated colonies. The major novelty of this method lies in its ability to distinguish between, and subsequently analyse, multiple microorganisms within a single encapsulation matrix across depth. Our results demonstrated the applicability and repeatability of this method with alginate-encapsulated pure (Nitrosomonas europaea) and enrichment cultures (anammox enrichment). The use of this method can potentially reveal interactions between encapsulated microorganisms and their surrounding matrix, as well as quantitatively validate predictions from mathematical models, thereby advancing our understanding of microbial ecology in encapsulated or even biofilm systems and facilitating the optimization of these systems.
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Affiliation(s)
- Zhiyue Wang
- Department of Civil and Environmental EngineeringUniversity of Hawai'iHonoluluHawai'iUSA
- Water Resources Research CenterUniversity of Hawai'iHonoluluHawai'iUSA
- BioTechnology InstituteUniversity of MinnesotaSt. PaulMinnesotaUSA
| | - Satoshi Ishii
- BioTechnology InstituteUniversity of MinnesotaSt. PaulMinnesotaUSA
- Department of Soil, Water and ClimateUniversity of MinnesotaSt. PaulMinnesotaUSA
| | - Paige J. Novak
- BioTechnology InstituteUniversity of MinnesotaSt. PaulMinnesotaUSA
- Department of Civil, Environmental, and Geo‐EngineeringUniversity of Minnesota, MinneapolisMinnesotaUSA
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11
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Zhang Y, Young P, Traini D, Li M, Ong HX, Cheng S. Challenges and current advances in in vitro biofilm characterization. Biotechnol J 2023; 18:e2300074. [PMID: 37477959 DOI: 10.1002/biot.202300074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 07/18/2023] [Accepted: 07/19/2023] [Indexed: 07/22/2023]
Abstract
Biofilms are structured communities of bacterial cells encased in a self-produced polymeric matrix, which develop over time and exhibit temporal responses to stimuli from internal biological processes or external environmental changes. They can be detrimental, threatening public health and causing economic loss, while they also play beneficial roles in ecosystem health, biotechnology processes, and industrial settings. Biofilms express extreme heterogeneity in their physical properties and structural composition, resulting in critical challenges in understanding them comprehensively. The lack of detailed knowledge of biofilms and their phenotypes has deterred significant progress in developing strategies to control their negative impacts and take advantage of their beneficial applications. A range of in vitro models and characterization tools have been developed and used to study biofilm growth and, specifically, to investigate the impact of environmental and growth factors on their development. This review article discusses the existing knowledge of biofilm properties and explains how external factors, such as flow condition, surface, interface, and host factor, may impact biofilm growth. The limitations of current tools, techniques, and in vitro models that are currently used for biofilms are also presented.
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Affiliation(s)
- Ye Zhang
- School of Engineering, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales, Australia
- Woolcock Institute of Medical Research, Sydney, New South Wales, Australia
| | - Paul Young
- Woolcock Institute of Medical Research, Sydney, New South Wales, Australia
- Department of Marketing, Macquarie Business School, Macquarie University, Sydney, New South Wales, Australia
| | - Daniela Traini
- Woolcock Institute of Medical Research, Sydney, New South Wales, Australia
- Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, New South Wales, Australia
| | - Ming Li
- School of Engineering, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales, Australia
| | - Hui Xin Ong
- Woolcock Institute of Medical Research, Sydney, New South Wales, Australia
- Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, New South Wales, Australia
| | - Shaokoon Cheng
- School of Engineering, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales, Australia
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12
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Okebiorun M, Oberbeck C, Waite C, Clark S, Miller D, Barney Smith EH, Cornell KA, Browning J. Selective Optical Imaging for Detection of Bacterial Biofilms in Tissues. J Imaging 2023; 9:160. [PMID: 37623692 PMCID: PMC10455256 DOI: 10.3390/jimaging9080160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 07/28/2023] [Accepted: 08/10/2023] [Indexed: 08/26/2023] Open
Abstract
SIGNIFICANCE The development of an imaging technique to accurately identify biofilm regions on tissues and in wounds is crucial for the implementation of precise surface-based treatments, leading to better patient outcomes and reduced chances of infection. AIM The goal of this study was to develop an imaging technique that relies on selective trypan blue (TB) staining of dead cells, necrotic tissues, and bacterial biofilms, to identify biofilm regions on tissues and wounds. APPROACH The study explored combinations of ambient multi-colored LED lights to obtain maximum differentiation between stained biofilm regions and the underlying chicken tissue or glass substrate during image acquisition. The TB imaging results were then visually and statistically compared to fluorescence images using a shape similarity measure. RESULTS The comparisons between the proposed TB staining method and the fluorescence standard used to detect biofilms on tissues and glass substrates showed up to 97 percent similarity, suggesting that the TB staining method is a promising technique for identifying biofilm regions. CONCLUSIONS The TB staining method demonstrates significant potential as an effective imaging technique for the identification of fluorescing and non-fluorescing biofilms on tissues and in wounds. This approach could lead to improved precision in surface-based treatments and better patient outcomes.
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Affiliation(s)
- Michael Okebiorun
- Biomedical Engineering Program, Boise State University, Boise, ID 83725, USA;
| | - Cody Oberbeck
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA or (E.H.B.S.)
| | - Cameron Waite
- Department of Mechanical and Biomedical Engineering, Boise State University, Boise, ID 83725, USA
| | - Samuel Clark
- Department of Mathematics, Boise State University, Boise, ID 83725, USA
| | - Dalton Miller
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID 83725, USA (K.A.C.)
| | - Elisa H. Barney Smith
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA or (E.H.B.S.)
- Autonomous Systems and Software Program, Luleå Tekniska Universitet, 97187 Luleå, Sweden
| | - Kenneth A. Cornell
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID 83725, USA (K.A.C.)
| | - Jim Browning
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA or (E.H.B.S.)
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13
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Hu J, Ji B, Wang R, Shi D, Shao S. Fouling by inorganic-particle-containing cake layers can be reduced by microorganisms at low fluxes. Sep Purif Technol 2023. [DOI: 10.1016/j.seppur.2023.123659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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14
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Siagian UWR, Friatnasary DL, Khoiruddin K, Reynard R, Qiu G, Ting YP, Wenten IG. Membrane-aerated biofilm reactor (MABR): recent advances and challenges. REV CHEM ENG 2023. [DOI: 10.1515/revce-2021-0078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Abstract
Membrane-aerated biofilm reactor (MABR) has been considered as an innovative technology to solve aeration issues in conventional bioreactors. MABR uses a membrane to supply oxygen to biofilm grown on the membrane surface. MABR can perform bubbleless aeration with high oxygen transfer rates, which can reduce energy requirements and expenses. In addition, a unique feature of counter-diffusion creates a stratified biofilm structure, allowing the simultaneous nitrification–denitrification process to take place in a single MABR. Controlling the biofilm is crucial in MABR operation, since its thickness significantly affects MABR performance. Several approaches have been proposed to control biofilm growth, such as increasing shear stress, adding chemical agents (e.g., surfactant), using biological predators to suppress microorganism growth, and introducing ultrasound cavitation to detach biofilm. Several studies also showed the important role of membrane properties and configuration in biofilm development. In addition, MABR demonstrates high removal rates of pollutants in various wastewater treatments, including in full-scale plants. This review presents the basic principles of MABR and the effect of operational conditions on its performance. Biofilm formation, methods to control its thickness, and membrane materials are also discussed. In addition, MABR performance in various applications, full-scale MBRs, and challenges is summarized.
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Affiliation(s)
- Utjok W. R. Siagian
- Department of Petroleum Engineering , Institut Teknologi Bandung , Jl. Ganesha 10, 40132 Bandung , Indonesia
| | - Dwi L. Friatnasary
- Department of Chemical Engineering , Institut Teknologi Bandung , Jl. Ganesha 10, 40132 Bandung , Indonesia
| | - Khoiruddin Khoiruddin
- Department of Chemical Engineering , Institut Teknologi Bandung , Jl. Ganesha 10, 40132 Bandung , Indonesia
| | - Reynard Reynard
- Department of Chemical Engineering , Institut Teknologi Bandung , Jl. Ganesha 10, 40132 Bandung , Indonesia
| | - Guanglei Qiu
- School of Environment and Energy, South China University of Technology , B4-405, Daxuecheng, 510006 Guangzhou , China
| | - Yen-Peng Ting
- Department of Chemical and Biomolecular Engineering , National University of Singapore , 4 Engineering Drive 4, 117576 Singapore , Singapore
| | - I Gede Wenten
- Department of Chemical Engineering , Institut Teknologi Bandung , Jl. Ganesha 10, 40132 Bandung , Indonesia
- Research Center for Bioscience and Biotechnology, Institut Teknologi Bandung , Jl. Ganesha 10, 40132 Bandung , Indonesia
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15
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Flemming HC, van Hullebusch ED, Neu TR, Nielsen PH, Seviour T, Stoodley P, Wingender J, Wuertz S. The biofilm matrix: multitasking in a shared space. Nat Rev Microbiol 2023; 21:70-86. [PMID: 36127518 DOI: 10.1038/s41579-022-00791-0] [Citation(s) in RCA: 179] [Impact Index Per Article: 179.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/04/2022] [Indexed: 01/20/2023]
Abstract
The biofilm matrix can be considered to be a shared space for the encased microbial cells, comprising a wide variety of extracellular polymeric substances (EPS), such as polysaccharides, proteins, amyloids, lipids and extracellular DNA (eDNA), as well as membrane vesicles and humic-like microbially derived refractory substances. EPS are dynamic in space and time and their components interact in complex ways, fulfilling various functions: to stabilize the matrix, acquire nutrients, retain and protect eDNA or exoenzymes, or offer sorption sites for ions and hydrophobic substances. The retention of exoenzymes effectively renders the biofilm matrix an external digestion system influencing the global turnover of biopolymers, considering the ubiquitous relevance of biofilms. Physico-chemical and biological interactions and environmental conditions enable biofilm systems to morph into films, microcolonies and macrocolonies, films, ridges, ripples, columns, pellicles, bubbles, mushrooms and suspended aggregates - in response to the very diverse conditions confronting a particular biofilm community. Assembly and dynamics of the matrix are mostly coordinated by secondary messengers, signalling molecules or small RNAs, in both medically relevant and environmental biofilms. Fully deciphering how bacteria provide structure to the matrix, and thus facilitate and benefit from extracellular reactions, remains the challenge for future biofilm research.
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Affiliation(s)
- Hans-Curt Flemming
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore.
| | | | - Thomas R Neu
- Department of River Ecology, Helmholtz Centre for Environmental Research - UFZ, Magdeburg, Germany
| | - Per H Nielsen
- Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark
| | - Thomas Seviour
- Aarhus University Centre for Water Technology, Department of Biological and Chemical Engineering, Aarhus University, Aarhus, Denmark
| | - Paul Stoodley
- Department of Microbial Infection and Immunity, The Ohio State University, Columbus, OH, USA.,Department of Orthopaedics, The Ohio State University, Columbus, OH, USA
| | - Jost Wingender
- University of Duisburg-Essen, Biofilm Centre, Department of Aquatic Microbiology, Essen, Germany
| | - Stefan Wuertz
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore
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16
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Endotracheal tube biofilm in critically ill patients during the COVID-19 pandemic : description of an underestimated microbiological compartment. Sci Rep 2022; 12:22389. [PMID: 36575298 PMCID: PMC9794690 DOI: 10.1038/s41598-022-26560-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 12/16/2022] [Indexed: 12/28/2022] Open
Abstract
Biofilm (BF) growth is believed to play a major role in the development of ventilator-associated pneumonia (VAP) in the intensive care unit. Despite concerted efforts to understand the potential implication of endotracheal tube (ETT)-BF dispersal, clinically relevant data are lacking to better characterize the impact of its mesostructure and microbiological singularity on the occurrence of VAP. We conducted a multicenter, retrospective observational study during the third wave of the COVID-19 pandemic, between March and May 2021. In total, 64 ETTs collected from 61 patients were included in the present BIOPAVIR study. Confocal microscopy acquisitions revealed two main morphological aspects of ETT-deposited BF: (1) a thin, continuous ribbon-shaped aspect, less likely monobacterial and predominantly associated with Enterobacter spp., Streptococcus pneumoniae or Viridans streptococci, and (2) a thicker, discontinuous, mushroom-shaped appearance, more likely characterized by the association of bacterial and fungal species in respiratory samples. The microbiological characterization of ETT-deposited BF found higher acquired resistance in more than 80% of analyzed BF phenotypes, compared to other colonization sites from the patient's environment. These findings reveal BF as a singular microbiological compartment, and are of added clinical value, with a view to future ETT-deposited BF-based antimicrobial stewardship in critically ill patients. Trial registration NCT04926493. Retrospectively registered 15 June 2021.
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17
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Synthetic periphyton as a model system to understand species dynamics in complex microbial freshwater communities. NPJ Biofilms Microbiomes 2022; 8:61. [PMID: 35869094 PMCID: PMC9307524 DOI: 10.1038/s41522-022-00322-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 07/01/2022] [Indexed: 11/09/2022] Open
Abstract
AbstractPhototrophic biofilms, also known as periphyton, are microbial freshwater communities that drive crucial ecological processes in streams and lakes. Gaining a deep mechanistic understanding of the biological processes occurring in natural periphyton remains challenging due to the high complexity and variability of such communities. To address this challenge, we rationally developed a workflow to construct a synthetic community by co-culturing 26 phototrophic species (i.e., diatoms, green algae, and cyanobacteria) that were inoculated in a successional sequence to create a periphytic biofilm on glass slides. We show that this community is diverse, stable, and highly reproducible in terms of microbial composition, function, and 3D spatial structure of the biofilm. We also demonstrate the ability to monitor microbial dynamics at the single species level during periphyton development and how their abundances are impacted by stressors such as increased temperature and a herbicide, singly and in combination. Overall, such a synthetic periphyton, grown under controlled conditions, can be used as a model system for theory testing through targeted manipulation.
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18
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Zhao Y, Zhu S, Fan X, Zhang X, Ren H, Huang H. Precise portrayal of microscopic processes of wastewater biofilm formation: Taking SiO 2 as the model carrier. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 849:157776. [PMID: 35926593 DOI: 10.1016/j.scitotenv.2022.157776] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 07/29/2022] [Accepted: 07/29/2022] [Indexed: 06/15/2023]
Abstract
Precise characterization of the microscopic processes of wastewater biofilm formation is essential for regulating biofilm behavior. Nevertheless, it remains a great challenge. This study investigated biofilm formation on SiO2 carriers under gradually increasing shear force combining the extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) theory in a Couette-Taylor reactor, and precisely revealed the micro-interface interaction and species colonization during biofilm formation. The results indicated that bacterial reversible adhesion distance on SiO2 carrier surface was 3.06 ± 0.48 nm. Meanwhile, the secondary minimum of total XDLVO interaction energy could be used as a novel indicator to distinguish biofilm formation stages. The revealed biofilm formation stages were also confirmed by the electrochemical analysis. Additionally, the pioneer species that colonized at first were Comamonadaceae, Azospira, Flavobacterium and Azonexus, while keystone species such as Hydrogenophaga, AKYH767, Aquimonas and Ignavibacterium determined the stability of microbial community. In conclusion, this study provided a methodological example to study wastewater biofilm micro-interface behavior through the integration of an experimental platform as well as multiple monitoring and analysis methods, which opened up new perspectives for biofilm research and provided useful guidance for the regulation of biofilm-related treatment processes and new technology development.
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Affiliation(s)
- Ying Zhao
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Shanshan Zhu
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Xuan Fan
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Xuxiang Zhang
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Hongqiang Ren
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Hui Huang
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China.
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19
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Gierl L, Horn H, Wagner M. Impact of Fe 2+ and Shear Stress on the Development and Mesoscopic Structure of Biofilms-A Bacillus subtilis Case Study. Microorganisms 2022; 10:2234. [PMID: 36422304 PMCID: PMC9699539 DOI: 10.3390/microorganisms10112234] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 11/04/2022] [Accepted: 11/07/2022] [Indexed: 07/25/2023] Open
Abstract
Bivalent cations are known to affect the structural and mechanical properties of biofilms. In order to reveal the impact of Fe2+ ions within the cultivation medium on biofilm development, structure and stability, Bacillus subtilis biofilms were cultivated in mini-fluidic flow cells. Two different Fe2+ inflow concentrations (0.25 and 2.5 mg/L, respectively) and wall shear stress levels (0.05 and 0.27 Pa, respectively) were tested. Mesoscopic biofilm structure was determined daily in situ and non-invasively by means of optical coherence tomography. A set of ten structural parameters was used to quantify biofilm structure, its development and change. The study focused on characterizing biofilm structure and development at the mesoscale (mm-range). Therefore, biofilm replicates (n = 10) were cultivated and analyzed. Three hypotheses were defined in order to estimate the effect of Fe2+ inflow concentration and/or wall shear stress on biofilm development and structure, respectively. It was not the intention to investigate and describe the underlying mechanisms of iron incorporation as this would require a different set of tools applied at microscopic levels as well as the use of, i.e., omic approaches. Fe2+ addition influenced biofilm development (e.g., biofilm accumulation) and structure markedly. Experiments revealed the accumulation of FeO(OH) within the biofilm matrix and a positive correlation of Fe2+ inflow concentration and biofilm accumulation. In more detail, independent of the wall shear stress applied during cultivation, biofilms grew approximately four times thicker at 2.5 mg Fe2+/L (44.8 µmol/L; high inflow concentration) compared to the low Fe2+ inflow concentration of 0.25 mg Fe2+/L (4.48 µmol/L). This finding was statistically verified (Scheirer-Ray-Hare test, ANOVA) and hints at a higher stability of Bacillus subtilis biofilms (e.g., elevated cohesive and adhesive strength) when grown at elevated Fe2+ inflow concentrations.
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Affiliation(s)
- Luisa Gierl
- Water Chemistry and Water Technology, Engler-Bunte-Institut, Karlsruhe Institute of Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany
| | - Harald Horn
- Water Chemistry and Water Technology, Engler-Bunte-Institut, Karlsruhe Institute of Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany
- German Technical and Scientific Association for Gas and Water (DVGW) Research Site at Karlsruhe Institute of Technology, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany
| | - Michael Wagner
- Water Chemistry and Water Technology, Engler-Bunte-Institut, Karlsruhe Institute of Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany
- Institute of Biological Interfaces (IBG-1), Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
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20
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Romeu MJ, Lima M, Gomes LC, de Jong ED, Morais J, Vasconcelos V, Pereira MFR, Soares OSGP, Sjollema J, Mergulhão FJ. The Use of 3D Optical Coherence Tomography to Analyze the Architecture of Cyanobacterial Biofilms Formed on a Carbon Nanotube Composite. Polymers (Basel) 2022; 14:polym14204410. [PMID: 36297988 PMCID: PMC9607013 DOI: 10.3390/polym14204410] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/12/2022] [Accepted: 10/14/2022] [Indexed: 11/16/2022] Open
Abstract
The development of environmentally friendly antifouling strategies for marine applications is of paramount importance, and the fabrication of innovative nanocomposite coatings is a promising approach. Moreover, since Optical Coherence Tomography (OCT) is a powerful imaging technique in biofilm science, the improvement of its analytical power is required to better evaluate the biofilm structure under different scenarios. In this study, the effect of carbon nanotube (CNT)-modified surfaces in cyanobacterial biofilm development was assessed over a long-term assay under controlled hydrodynamic conditions. Their impact on the cyanobacterial biofilm architecture was evaluated by novel parameters obtained from three-dimensional (3D) OCT analysis, such as the contour coefficient, total biofilm volume, biovolume, volume of non-connected pores, and the average size of non-connected pores. The results showed that CNTs incorporated into a commercially used epoxy resin (CNT composite) had a higher antifouling effect at the biofilm maturation stage compared to pristine epoxy resin. Along with a delay in biofilm development, a decrease in biofilm wet weight, thickness, and biovolume was also achieved with the CNT composite compared to epoxy resin and glass (control surfaces). Additionally, biofilms developed on the CNT composite were smoother and presented a lower porosity and a strictly packed structure when compared with those formed on the control surfaces. The novel biofilm parameters obtained from 3D OCT imaging are extremely important when evaluating the biofilm architecture and behavior under different scenarios beyond marine applications.
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Affiliation(s)
- Maria J. Romeu
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Marta Lima
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Luciana C. Gomes
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Ed. D. de Jong
- Department of Biomedical Engineering, University of Groningen, University Medical Centre Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - João Morais
- CIIMAR—Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Matosinhos, Portugal
| | - Vítor Vasconcelos
- CIIMAR—Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Matosinhos, Portugal
- Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal
| | - Manuel F. R. Pereira
- ALiCE—Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- LSRE–LCM—Laboratory of Separation and Reaction Engineering–Laboratory of Catalysis and Materials, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Olívia S. G. P. Soares
- ALiCE—Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- LSRE–LCM—Laboratory of Separation and Reaction Engineering–Laboratory of Catalysis and Materials, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Jelmer Sjollema
- Department of Biomedical Engineering, University of Groningen, University Medical Centre Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Filipe J. Mergulhão
- LEPABE—Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- ALiCE—Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
- Correspondence: ; Tel.: +351-225081668
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21
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Guliy OI, Evstigneeva SS, Bunin VD. Microfluidic bioanalytical system for biofilm formation indication. Talanta 2022; 247:123541. [DOI: 10.1016/j.talanta.2022.123541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 05/02/2022] [Accepted: 05/09/2022] [Indexed: 11/27/2022]
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22
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Effects of Ethyl Lauroyl Arginate (LAE) on Biofilm Detachment: Shear Rate, Concentration, and Dosing Time. WATER 2022. [DOI: 10.3390/w14142158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Biofilm formation is one of the main obstacles in membrane treatment. The non-oxidizing biocide ethyl lauroyl arginate (LAE) is promising for mitigating biofilm development on membrane surfaces. However, the operating conditions of LAE and their impact on biofilm detachment are not comprehensively understood. In this study, a real-time in vitro flow cell system was utilized to observe biofilm dispersal caused by the shear rate, concentration, and treatment time of LAE. This confirmed that the biofilm was significantly reduced to 68.2% at a shear rate of 3.42 s−1 due to the increased physical lifting force. LAE exhibited two different mechanisms for bacterial inactivation and biofilm dispersal. Biofilms treated with LAE at sub-growth inhibitory concentrations for a longer time could effectively detach the biofilm formed on the surface of the glass slides, which can be attributed to the increased motility of microorganisms. However, a high concentration (i.e., bactericidal concentration) of LAE should be seriously considered because of the inactivated sessile bacteria and their residual debris remaining on the surface. This study sheds light on the effect of LAE on biofilm detachment and provides insights into biofouling mitigation during the membrane process.
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23
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Yao S, Hao L, Zhou R, Jin Y, Huang J, Wu C. Multispecies biofilms in fermentation: Biofilm formation, microbial interactions, and communication. Compr Rev Food Sci Food Saf 2022; 21:3346-3375. [PMID: 35762651 DOI: 10.1111/1541-4337.12991] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 05/07/2022] [Accepted: 05/15/2022] [Indexed: 02/05/2023]
Abstract
Food fermentation is driven by microorganisms, which usually coexist as multispecies biofilms. The activities and interactions of functional microorganisms and pathogenic bacteria in biofilms have important implications for the quality and safety of fermented foods. It was verified that the biofilm lifestyle benefited the fitness of microorganisms in harsh environments and intensified the cooperation and competition between biofilm members. This review focuses on multispecies biofilm formation, microbial interactions and communication in biofilms, and the application of multispecies biofilms in food fermentation. Microbial aggregation and adhesion are important steps in the early stage of multispecies biofilm formation. Different biofilm-forming abilities and strategies among microorganisms lead to several types of multispecies biofilm formation. The spatial distribution of multispecies biofilms reflects microbial interactions and biofilm function. Then, we discuss the intrinsic factors and external manifestations of multispecies biofilm system succession. Several typical interspecies cooperation and competition modes and mechanisms of microbial communication were reviewed in this review. The main limitations of the studies included in this review are the relatively small number of studies of biofilms formed by functional microorganisms during fermentation and the lack of direct evidence for the formation process of multispecies biofilms and microbial interactions and communication within biofilms. This review aims to provide the food industry with a sufficient understanding of multispecies biofilms in food fermentation. Practical Application: Meanwhile, it offers a reference value for better controlling and utilizing biofilms during food fermentation process, and the improvement of the yield, quality, and safety of fermented products including Chinese Baijiu, cheeese,kefir, soy sauce, kombucha, and fermented olive.
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Affiliation(s)
- Shangjie Yao
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China.,Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
| | - Liying Hao
- State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China
| | - Rongqing Zhou
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China.,Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
| | - Yao Jin
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China.,Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
| | - Jun Huang
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China.,Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
| | - Chongde Wu
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China.,Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
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Häuser L, Erben J, Pillot G, Kerzenmacher S, Dreher W, Küstermann E. In vivo characterization of electroactive biofilms inside porous electrodes with MR Imaging. RSC Adv 2022; 12:17784-17793. [PMID: 35765339 PMCID: PMC9199086 DOI: 10.1039/d2ra01162j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 05/30/2022] [Indexed: 12/03/2022] Open
Abstract
Identifying the limiting processes of electroactive biofilms is key to improve the performance of bioelectrochemical systems (BES). For modelling and developing BES, spatial information of transport phenomena and biofilm distribution are required and can be determined by Magnetic Resonance Imaging (MRI) in vivo, in situ and in operando even inside opaque porous electrodes. A custom bioelectrochemical cell was designed that allows MRI measurements with a spatial resolution of 50 μm inside a 500 μm thick porous carbon electrode. The MRI data showed that only a fraction of the electrode pore space is colonized by the Shewanella oneidensis MR-1 biofilm. The maximum biofilm density was observed inside the porous electrode close to the electrode-medium interface. Inside the biofilm, mass transport by diffusion is lowered down to 45% compared to the bulk growth medium. The presented data and the methods can be used for detailed models of bioelectrochemical systems and for the design of improved electrode structures. The use of magnetic resonance imaging can contribute to a better understanding of limiting processes occurring in electroactive biofilms especially inside opaque porous electrodes.![]()
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Affiliation(s)
- Luca Häuser
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen 28359 Bremen Germany
| | | | - Guillaume Pillot
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen 28359 Bremen Germany
| | - Sven Kerzenmacher
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen 28359 Bremen Germany
| | - Wolfgang Dreher
- In-vivo-MR Group, Faculty 02 (Biology/Chemistry), University of Bremen 28359 Bremen Germany
| | - Ekkehard Küstermann
- In-vivo-MR Group, Faculty 02 (Biology/Chemistry), University of Bremen 28359 Bremen Germany
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25
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Sonawane JM, Rai AK, Sharma M, Tripathi M, Prasad R. Microbial biofilms: Recent advances and progress in environmental bioremediation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 824:153843. [PMID: 35176385 DOI: 10.1016/j.scitotenv.2022.153843] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 01/15/2022] [Accepted: 02/09/2022] [Indexed: 05/21/2023]
Abstract
Microbial biofilms are formed by adherence of the bacteria through their secreted polymer matrices. The major constituents of the polymer matrices are extracellular DNAs, proteins, polysaccharides. Biofilms have exhibited a promising role in the area of bioremediation. These activities can be further improved by tuning the parameters like quorum sensing, characteristics of the adhesion surface, and other environmental factors. Organic pollutants have created a global concern because of their long-term toxicity on human, marine, and animal life. These contaminants are not easily degradable and continue to prevail in the environment for an extended period. Biofilms are being used for the remediation of different pollutants, among which organic pollutants have been of significance. The bioremediation of organic contaminants using biofilms is an eco-friendly, cheap, and green process. However, the development of this technology demands knowledge on the mechanism of action of the microbes to form the biofilm, types of specific bacteria or fungi responsible for the degradation of a particular organic compound, and the mechanistic role of the biofilm in the degradation of the pollutants. This review puts forth a comprehensive summary of the role of microbial biofilms in the bioremediation of different environment-threatening organic pollutants.
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Affiliation(s)
- Jayesh M Sonawane
- Department of Chemistry, Alexandre-Vachon Pavilion, Laval University, Quebec G1V 0A6, Canada
| | - Ashutosh Kumar Rai
- Department of Biochemistry, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia
| | - Minaxi Sharma
- Department of Applied Biology, University of Science and Technology, Meghalaya, 793101, India
| | - Manikant Tripathi
- Biotechnology Program, Dr. Rammanohar Lohia Avadh University, Ayodhya 224001, Uttar Pradesh, India
| | - Ram Prasad
- Department of Botany, Mahatma Gandhi Central University, Motihari 845401, Bihar, India.
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26
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Fanesi A, Martin T, Breton C, Bernard O, Briandet R, Lopes F. The architecture and metabolic traits of monospecific photosynthetic biofilms studied in a custom flow-through system. Biotechnol Bioeng 2022; 119:2459-2470. [PMID: 35643824 DOI: 10.1002/bit.28147] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 04/28/2022] [Accepted: 05/19/2022] [Indexed: 11/07/2022]
Abstract
Microalgae biofilms have great ecological importance and high biotechnological potential. Nevertheless, an in-depth and combined structural (i.e., the architecture of the biofilm) and physiological characterization of microalgae biofilms is still missing. An approach able to provide the same time physiological and structural information during biofilm growth would be of paramount importance to understand these complex biological systems and to optimize their productivity. In this study, monospecific biofilms of a diatom and a green alga were grown under dynamic conditions in custom flow cells represented by UV/Vis spectroscopic cuvettes. Such flow cells were conceived to characterize the biofilms by several techniques mostly in situ and in a nondestructive way. Physiological traits were obtained by measuring variable chlorophyll a fluorescence by pulse amplitude modulated fluorometry and by scanning the biofilms in a spectrometer to obtain in vivo pigments spectral signatures. The architectural features were obtained by imaging the biofilms with a confocal laser scanning microscopy and an optical coherence tomography. Overall, this experimental setup allowed us to follow the growth of two biofilm-forming microalgae showing that cell physiology is more affected in complex biofilms likely as a consequence of alterations in local environmental conditions.
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Affiliation(s)
- Andrea Fanesi
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Thierry Martin
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Cyril Breton
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Olivier Bernard
- Biocore, INRIA, Université Côte d'Azur, Sophia Antipolis Cedex, France
| | - Romain Briandet
- Micalis Institute, AgroParisTech, INRAE, Université Paris-Saclay, Jouy-en-Josas, France
| | - Filipa Lopes
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, Gif-sur-Yvette, France
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27
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Zhang Y, Lin S, Fu J, Zhang W, Shu G, Lin J, Li H, Xu F, Tang H, Peng G, Zhao L, Chen S, Fu H. Nanocarriers for combating biofilms: advantages and challenges. J Appl Microbiol 2022; 133:1273-1287. [PMID: 35621701 DOI: 10.1111/jam.15640] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 03/08/2022] [Accepted: 05/19/2022] [Indexed: 11/27/2022]
Abstract
Bacterial biofilms are highly resistant to antibiotics and pose a great threat to human and animal health. The control and removal of bacterial biofilms have become an important topic in the field of bacterial infectious diseases. Nanocarriers show great anti-biofilm potential because of their small particle size and strong permeability. In this review, the advantages of nanocarriers for combating biofilms are analyzed. Nanocarriers can act on all stages of bacterial biofilm formation and diffusion. They can improve the scavenging effect of biofilm by targeting biofilm, destroying extracellular polymeric substances, and enhancing the biofilm permeability of antimicrobial substances. Nanocarriers can also improve the antibacterial ability of antimicrobial drugs against bacteria in biofilm by protecting the loaded drugs and controlling the release of antimicrobial substances. Additionally, we emphasize the challenges faced in using nanocarrier formulations and translating them from a preclinical level to the clinical setting.
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Affiliation(s)
- Yuning Zhang
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Shiyu Lin
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Jingyuan Fu
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Wei Zhang
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Gang Shu
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Juchun Lin
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Haohuan Li
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Funeng Xu
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Huaqiao Tang
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Guangneng Peng
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Ling Zhao
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Shiqi Chen
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Hualin Fu
- Innovative Engineering Research Center of Veterinary Pharmaceutics, Department of Pharmacy, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
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28
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Borges MMB, Dijkstra RJB, Andrade FB, Duarte MAH, Versluis M, van der Sluis LWM, Petridis X. The response of dual-species bacterial biofilm to 2% and 5% NaOCl mixed with etidronic acid: a laboratory real-time evaluation using optical coherence tomography. Int Endod J 2022; 55:758-771. [PMID: 35470434 PMCID: PMC9325035 DOI: 10.1111/iej.13754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 04/19/2022] [Accepted: 04/20/2022] [Indexed: 11/29/2022]
Abstract
Aim The addition of etidronic acid (HEDP) to sodium hypochlorite (NaOCl) could increase the antibiofilm potency of the irrigant, whilst maintaining the benefits of continuous chelation. Studies conducted so far have shown that mixing HEDP with NaOCl solutions of relatively low concentration does not compromise the antibiofilm efficacy of the irrigant. However, the working lifespan of NaOCl may decrease resulting in a reduction of its antibiofilm efficacy over time (efficiency). In this regard, continuous irrigant replenishment needs to be examined. This study investigated the response of a dual‐species biofilm when challenged with 2% and 5% NaOCl mixed with HEDP for a prolonged timespan and under steady laminar flow. Methodology Dual‐species biofilms comprised of Streptococcus oralis J22 and Actinomyces naeslundii T14V‐J1 were grown on human dentine discs in a constant depth film fermenter (CDFF) for 96 h. Biofilms were treated with 2% and 5% NaOCl, alone or mixed with HEDP. Irrigants were applied under steady laminar flow for 8 min. Biofilm response was evaluated by means of optical coherence tomography (OCT). Biofilm removal, biofilm disruption, rate of biofilm loss and disruption as well as bubble formation were assessed. One‐way anova, Wilcoxon's signed‐rank test and Kruskal–Wallis H test were performed for statistical analysis of the data. The level of significance was set at a ≤.05. Results Increasing NaOCl concentration resulted in increased biofilm removal and disruption, higher rate of biofilm loss and disruption and increased bubble formation. Mixing HEDP with NaOCl caused a delay in the antibiofilm action of the latter, without compromising its antibiofilm efficacy. Conclusions NaOCl concentration dictates the biofilm response irrespective of the presence of HEDP. The addition of HEDP resulted in a delay in the antibiofilm action of NaOCl. This delay affects the efficiency, but not the efficacy of the irrigant over time.
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Affiliation(s)
- M M B Borges
- Department of Dentistry, Endodontics and Dental Materials, Bauru School of Dentistry, University of São Paulo, Bauru, Brazil
| | - R J B Dijkstra
- Department of Conservative Dentistry, Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - F B Andrade
- Department of Dentistry, Endodontics and Dental Materials, Bauru School of Dentistry, University of São Paulo, Bauru, Brazil
| | - M A H Duarte
- Department of Dentistry, Endodontics and Dental Materials, Bauru School of Dentistry, University of São Paulo, Bauru, Brazil
| | - M Versluis
- Physics of Fluids group, Technical Medical (TechMed) Center and MESA+ Institute for Nanotechnology, University of Twente, Enschede
| | - L W M van der Sluis
- Department of Conservative Dentistry, Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - X Petridis
- Department of Conservative Dentistry, Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
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29
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Boutsioukis C, Arias‐Moliz MT, Chávez de Paz LE. A critical analysis of research methods and experimental models to study irrigants and irrigation systems. Int Endod J 2022; 55 Suppl 2:295-329. [PMID: 35171506 PMCID: PMC9314845 DOI: 10.1111/iej.13710] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 02/07/2022] [Accepted: 02/08/2022] [Indexed: 11/28/2022]
Abstract
Irrigation plays an essential role in root canal treatment. The purpose of this narrative review was to critically appraise the experimental methods and models used to study irrigants and irrigation systems and to provide directions for future research. Studies on the antimicrobial effect of irrigants should use mature multispecies biofilms grown on dentine or inside root canals and should combine at least two complementary evaluation methods. Dissolution of pulp tissue remnants should be examined in the presence of dentine and, preferably, inside human root canals. Micro-computed tomography is currently the method of choice for the assessment of accumulated dentine debris and their removal. A combination of experiments in transparent root canals and numerical modeling is needed to address irrigant penetration. Finally, models to evaluate irrigant extrusion through the apical foramen should simulate the periapical tissues and provide quantitative data on the amount of extruded irrigant. Mimicking the in vivo conditions as close as possible and standardization of the specimens and experimental protocols are universal requirements irrespective of the surrogate endpoint studied. Obsolete and unrealistic models must be abandoned in favour of more appropriate and valid ones that have more direct application and translation to clinical Endodontics.
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Affiliation(s)
- Christos Boutsioukis
- Department of EndodontologyAcademic Centre for Dentistry Amsterdam (ACTA)University of Amsterdam and Vrije Universiteit AmsterdamAmsterdamThe Netherlands
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30
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Krujatz F, Dani S, Windisch J, Emmermacher J, Hahn F, Mosshammer M, Murthy S, Steingroewer J, Walther T, Kühl M, Gelinsky M, Lode A. Think outside the box: 3D bioprinting concepts for biotechnological applications – recent developments and future perspectives. Biotechnol Adv 2022; 58:107930. [DOI: 10.1016/j.biotechadv.2022.107930] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 02/17/2022] [Indexed: 12/14/2022]
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31
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Iron amended gravity-driven membrane (IGDM) system for heavy-metal-containing groundwater treatment. J Memb Sci 2022. [DOI: 10.1016/j.memsci.2021.120067] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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32
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Desmond P, Huisman KT, Sanawar H, Farhat NM, Traber J, Fridjonsson EO, Johns ML, Flemming HC, Picioreanu C, Vrouwenvelder JS. Controlling the hydraulic resistance of membrane biofilms by engineering biofilm physical structure. WATER RESEARCH 2022; 210:118031. [PMID: 34998071 DOI: 10.1016/j.watres.2021.118031] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 11/26/2021] [Accepted: 12/29/2021] [Indexed: 06/14/2023]
Abstract
The application of membrane technology for water treatment and reuse is hampered by the development of a microbial biofilm. Biofilm growth in micro-and ultrafiltration (MF/UF) membrane modules, on both the membrane surface and feed spacer, can form a secondary membrane and exert resistance to permeation and crossflow, increasing energy demand and decreasing permeate quantity and quality. In recent years, exhaustive efforts were made to understand the chemical, structural and hydraulic characteristics of membrane biofilms. In this review, we critically assess which specific structural features of membrane biofilms exert resistance to forced water passage in MF/UF membranes systems applied to water and wastewater treatment, and how biofilm physical structure can be engineered by process operation to impose less hydraulic resistance ("below-the-pain threshold"). Counter-intuitively, biofilms with greater thickness do not always cause a higher hydraulic resistance than thinner biofilms. Dense biofilms, however, had consistently higher hydraulic resistances compared to less dense biofilms. The mechanism by which density exerts hydraulic resistance is reported in the literature to be dependant on the biofilms' internal packing structure and EPS chemical composition (e.g., porosity, polymer concentration). Current reports of internal porosity in membrane biofilms are not supported by adequate experimental evidence or by a reliable methodology, limiting a unified understanding of biofilm internal structure. Identifying the dependency of hydraulic resistance on biofilm density invites efforts to control the hydraulic resistance of membrane biofilms by engineering internal biofilm structure. Regulation of biofilm internal structure is possible by alteration of key determinants such as feed water nutrient composition/concentration, hydraulic shear stress and resistance and can engineer biofilm structural development to decrease density and therein hydraulic resistance. Future efforts should seek to determine the extent to which the concept of "biofilm engineering" can be extended to other biofilm parameters such as mechanical stability and the implication for biofilm control/removal in engineered water systems (e.g., pipelines and/or, cooling towers) susceptible to biofouling.
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Affiliation(s)
- Peter Desmond
- Institute of Environmental Engineering, RWTH Aachen University, Mies-van-der-Rohe-Strasse 1, D52074 Aachen, Germany.
| | - Kees Theo Huisman
- Biological and Environmental Sciences and Engineering Division, Water Desalination and Reuse Center King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Huma Sanawar
- Biological and Environmental Sciences and Engineering Division, Water Desalination and Reuse Center King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Nadia M Farhat
- Biological and Environmental Sciences and Engineering Division, Water Desalination and Reuse Center King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Jacqueline Traber
- Department of Process Engineering, Swiss Federal Institute for Aquatic Science and Technology (EAWAG), Dübendorf 8600, Switzerland
| | - Einar O Fridjonsson
- Department of Chemical Engineering, The University of Western Australia, Crawley, WA 6009, Australia
| | - Michael L Johns
- Department of Chemical Engineering, The University of Western Australia, Crawley, WA 6009, Australia
| | - Hans-Curt Flemming
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE), 60 Nanyang Drive, 637551, Singapore; Biofilm Centre, Faculty of Chemistry, University of Duisburg-Essen, Universitätsstr. 5, 45141, Essen, Germany; IWW Water Centre, Moritzstrasse 26, 45476, Muelheim, Germany
| | - Cristian Picioreanu
- Biological and Environmental Sciences and Engineering Division, Water Desalination and Reuse Center King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Johannes S Vrouwenvelder
- Biological and Environmental Sciences and Engineering Division, Water Desalination and Reuse Center King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia; Department of Biotechnology, Faculty of Applied Sciences, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, Netherlands
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Azimi S, Lewin GR, Whiteley M. The biogeography of infection revisited. Nat Rev Microbiol 2022; 20:579-592. [PMID: 35136217 PMCID: PMC9357866 DOI: 10.1038/s41579-022-00683-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/04/2022] [Indexed: 01/01/2023]
Abstract
Many microbial communities, including those involved in chronic human infections, are patterned at the micron scale. In this Review, we summarize recent work that has defined the spatial arrangement of microorganisms in infection and begun to demonstrate how changes in spatial patterning correlate with disease. Advances in microscopy have refined our understanding of microbial micron-scale biogeography in samples from humans. These findings then serve as a benchmark for studying the role of spatial patterning in preclinical models, which provide experimental versatility to investigate the interplay between biogeography and pathogenesis. Experimentation using preclinical models has begun to show how spatial patterning influences the interactions between cells, their ability to coexist, their virulence and their recalcitrance to treatment. Future work to study the role of biogeography in infection and the functional biogeography of microorganisms will further refine our understanding of the interplay of spatial patterning, pathogen virulence and disease outcomes.
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Affiliation(s)
- Sheyda Azimi
- School of Biological Sciences and Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, USA
| | - Gina R Lewin
- Emory-Children's Cystic Fibrosis Center, Atlanta, GA, USA
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Li M, Matouš K, Nerenberg R. Data-driven modeling of heterogeneous viscoelastic biofilms. Biotechnol Bioeng 2022; 119:1301-1313. [PMID: 35129209 DOI: 10.1002/bit.28056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 01/21/2022] [Accepted: 01/30/2022] [Indexed: 11/06/2022]
Abstract
Biofilms are typically heterogeneous in morphology, structure, and composition, resulting in non-uniform mechanical properties. The distribution of mechanical properties, in turn, determines the biofilm behavior, such as deformation and detachment. Most biofilm models neglect biofilm heterogeneity, especially at the microscale. In this study, an image-based modeling approach was developed to transform two-dimensional optical coherence tomography (OCT) biofilm images to a pixel-scale non-Newtonian viscosity map of the biofilm. The map was calibrated using the bulk viscosity data from rheometer tests, based on assumed maximum and minimum viscosities and a relationship between OCT image intensity signals and non-Newtonian viscosity. While not quantitatively measuring biofilm viscosity for each pixel, it allows a rational spatial allocation of viscosities within the biofilm: areas with lower cell density, e.g., voids, are assigned lower viscosities, and areas with high cell densities are assigned higher viscosities. The spatial distribution of non-Newtonian viscosity was applied in an established Oldroyd-B constitutive model and implemented using the phase-field continuum approach for the deformation and stress analysis. The heterogeneous model was able to predict deformations more accurately than a homogenous one. Stress distribution in the heterogeneous biofilm displayed better characteristics than that in the homogeneous one, because it is highly dependent on the viscosity distribution. This work, using a pixel-scale, image-based approach to map the mechanical heterogeneity of biofilms for computational deformation and stress analysis, provides a novel modeling approach that allows the consideration of biofilm structural and mechanical heterogeneity. Future research should better characterize the relationship between OCT signal and viscosity, and consider other constitutive models for biofilm mechanical behavior. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Mengfei Li
- University of Notre Dame, Department of Civil and Environmental Engineering and Earth Sciences, 156 Fitzpatrick Hall, Notre Dame, IN, 46556, USA
| | - Karel Matouš
- University of Notre Dame, Department of Aerospace and Mechanical Engineering, Notre Dame, IN, 46556, USA
| | - Robert Nerenberg
- University of Notre Dame, Department of Civil and Environmental Engineering and Earth Sciences, 156 Fitzpatrick Hall, Notre Dame, IN, 46556, USA
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Sportelli MC, Kranz C, Mizaikoff B, Cioffi N. Recent advances on the spectroscopic characterization of microbial biofilms: A critical review. Anal Chim Acta 2022; 1195:339433. [DOI: 10.1016/j.aca.2022.339433] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 12/30/2021] [Accepted: 01/02/2022] [Indexed: 02/07/2023]
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Enrichment of phosphate-accumulating organisms (PAOs) in a microfluidic model biofilm system by mimicking a typical aerobic granular sludge feast/famine regime. Appl Microbiol Biotechnol 2022; 106:1313-1324. [PMID: 35032186 PMCID: PMC8816403 DOI: 10.1007/s00253-022-11759-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 10/26/2021] [Accepted: 12/28/2021] [Indexed: 11/03/2022]
Abstract
Abstract Wastewater treatment using aerobic granular sludge has gained increasing interest due to its advantages compared to conventional activated sludge. The technology allows simultaneous removal of organic carbon, nitrogen, and phosphorus in a single reactor system and is independent of space-intensive settling tanks. However, due to the microscale, an analysis of processes and microbial population along the radius of granules is challenging. Here, we introduce a model system for aerobic granular sludge on a small scale by using a machine-assisted microfluidic cultivation platform. With an implemented logic module that controls solenoid valves, we realized alternating oxic hunger and anoxic feeding phases for the biofilms growing within. Sampling during ongoing anoxic cultivation directly from the cultivation channel was achieved with a robotic sampling device. Analysis of the biofilms was conducted using optical coherence tomography, fluorescence in situ hybridization, and amplicon sequencing. Using this setup, it was possible to significantly enrich the percentage of polyphosphate-accumulating organisms (PAO) belonging to the family Rhodocyclaceae in the community compared to the starting inoculum. With the aid of this miniature model system, it is now possible to investigate the influence of a multitude of process parameters in a highly parallel way to understand and efficiently optimize aerobic granular sludge-based wastewater treatment systems.Key points• Development of a microfluidic model to study EBPR.• Feast-famine regime enriches polyphosphate-accumulating organisms (PAOs).• Microfluidics replace sequencing batch reactors for aerobic granular sludge research.
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Shao S, Shi D, Hu J, Qing W, Li X, Li X, Ji B, Yang Z, Guo H, Tang CY. Unraveling the Kinetics and Mechanism of Surfactant-Induced Wetting in Membrane Distillation: An In Situ Observation with Optical Coherence Tomography. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:556-563. [PMID: 34928146 DOI: 10.1021/acs.est.1c05090] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
In this study, we performed a direct contact membrane distillation and successfully demonstrated the non-invasive imaging of surfactant-induced wetting using optical coherence tomography. This method enabled us to investigate the wetting kinetics, which was found to follow a "three-region" relationship between the wetting rate and surfactant concentration: the (i) nonwetted region, (ii) concentration-dependent region, and (iii) concentration-independent region at low, intermediate, and high surfactant concentrations, respectively. This wetting behavior was explained by the "autophilic effect", i.e., the wetting was caused by the transfer of surfactants from the water-vapor interface to the unwetted membrane and rendered this membrane hydrophilic, and then the wetting frontier moved forward under capillary forces. At region-(i), the surfactant concentration in the water-vapor interface (Clv) was too low to make the unwetted membrane sufficiently hydrophilic; thereby, the membrane could not be wetted. At region-(ii), due to the fast adsorption of the surfactant on the newly wetted membrane, the wetting rate was determined by the advection/diffusion of surfactants from the feed stream. Consequently, the wetting rate increased with the increases in the water flux and surfactant concentration. At region-(iii), the advection/diffusion provided excess surfactants for adsorption, and thus Clv reached its upper limit (maximum surface excess) and the wetting rate leveled off.
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Affiliation(s)
- Senlin Shao
- School of Civil Engineering, Wuhan University, Wuhan 430072, PR China
| | - Danting Shi
- School of Civil Engineering, Wuhan University, Wuhan 430072, PR China
| | - Jiangshuai Hu
- Department of Water and Wastewater Engineering, Wuhan University of Science and Technology, Wuhan 430081, PR China
| | - Weihua Qing
- Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Xianhui Li
- Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Xue Li
- School of Civil Engineering, Wuhan University, Wuhan 430072, PR China
| | - Bin Ji
- Department of Water and Wastewater Engineering, Wuhan University of Science and Technology, Wuhan 430081, PR China
| | - Zhe Yang
- Department of Civil Engineering, The University of Hong Kong, Pokfulam, Hong Kong SAR, China
| | - Hao Guo
- Department of Civil Engineering, The University of Hong Kong, Pokfulam, Hong Kong SAR, China
| | - Chuyang Y Tang
- Department of Civil Engineering, The University of Hong Kong, Pokfulam, Hong Kong SAR, China
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Zhu T, Zhou Z, Qu F, Liu B, Van der Bruggen B. Separation performance of ultrafiltration during the treatment of algae-laden water in the presence of an anionic surfactant. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2021.119894] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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On-Line Monitoring of Biofilm Accumulation on Graphite-Polypropylene Electrode Material Using a Heat Transfer Sensor. BIOSENSORS 2021; 12:bios12010018. [PMID: 35049646 PMCID: PMC8773567 DOI: 10.3390/bios12010018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 12/18/2021] [Accepted: 12/27/2021] [Indexed: 11/17/2022]
Abstract
Biofilms growing on electrodes are the heart piece of bioelectrochemical systems (BES). Moreover, the biofilm morphology is key for the efficient performance of BES and must be monitored and controlled for a stable operation. For the industrial use of BES (i.e., microbial fuel cells for energy production), monitoring of the biofilm accumulation directly on the electrodes during operation is desirable. In this study a commercially available on-line heat transfer biofilm sensor is applied to a graphite-polypropylene (C-PP) pipe and compared to its standard version where the sensor is applied to a stainless-steel pipe. The aim was to investigate the transferability of the sensor to a carbonaceous material (C-PP), that are preferably used as electrode materials for bioelectrochemical systems, thereby enabling biofilm monitoring directly on the electrode surface. The sensor signal was correlated to the gravimetrically determined biofilm thickness in order to identify the sensitivity of the sensor for the detection and quantification of biofilm on both materials. Results confirmed the transferability of the sensor to the C-PP material, despite the sensor sensitivity being decreased by a factor of approx. 5 compared to the default biofilm sensor applied to a stainless-steel pipe.
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Rodríguez-Herrera J, Cabado AG, Bodelón G, Cunha SC, Pinto V, Fernandes JO, Lago J, Muñoz S, Pastoriza-Santos I, Sousa P, Gonçalves L, López-Cabo M, Pérez-Juste J, Santos J, Minas G. Methodological Approaches for Monitoring Five Major Food Safety Hazards Affecting Food Production in the Galicia-Northern Portugal Euroregion. Foods 2021; 11:84. [PMID: 35010210 PMCID: PMC8750003 DOI: 10.3390/foods11010084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 12/14/2021] [Accepted: 12/21/2021] [Indexed: 11/16/2022] Open
Abstract
The agri-food industry has historically determined the socioeconomic characteristics of Galicia and Northern Portugal, and it was recently identified as an area for collaboration in the Euroregion. In particular, there is a need for action to help to ensure the provision of safe and healthy foods by taking advantage of key enabling technologies. The goals of the FOODSENS project are aligned with this major objective, specifically with the development of biosensors able to monitor hazards relevant to the safety of food produced in the Euroregion. The present review addresses the state of the art of analytical methodologies and techniques-whether commercially available or in various stages of development-for monitoring food hazards, such as harmful algal blooms, mycotoxins, Listeria monocytogenes, allergens, and polycyclic aromatic hydrocarbons. We discuss the pros and cons of these methodologies and techniques and address lines of research for point-of-care detection. Accordingly, the development of miniaturized automated monitoring strategies is considered a priority in terms of health and economic interest, with a significant impact in several areas, such as food safety, water quality, pollution control, and public health. Finally, we present potential market opportunities that could result from the availability of rapid and reliable commercial methodologies.
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Affiliation(s)
- Juan Rodríguez-Herrera
- Instituto de Investigaciones Marinas, Consejo Superior de Investigaciones Científicas (IIM-CSIC), 36208 Vigo, Spain; (S.M.); (M.L.-C.)
| | - Ana G. Cabado
- ANFACO-CECOPESCA, Ctra. Colexio Universitario, 16, 36310 Vigo, Spain; (A.G.C.); (J.L.)
| | - Gustavo Bodelón
- CINBIO, Campus Universitario As Lagoas, Universidade de Vigo, 36310 Vigo, Spain; (G.B.); (I.P.-S.); (J.P.-J.)
- Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-UVIGO, 36310 Vigo, Spain
| | - Sara C. Cunha
- LAQV-REQUIMTE, Laboratory of Bromatology and Hidrology, Department of Chemical Sciences, Facultaty of Pharmacy, University of Porto, Jorge de Viterbo Ferreira 228, 4050-313 Porto, Portugal; (S.C.C.); (J.O.F.); (J.S.)
| | - Vânia Pinto
- Center for MicroElectromechanical Systems (CMEMS-UMinho), University of Minho, 4800-058 Guimarães, Portugal; (V.P.); (P.S.); (L.G.); (G.M.)
| | - José O. Fernandes
- LAQV-REQUIMTE, Laboratory of Bromatology and Hidrology, Department of Chemical Sciences, Facultaty of Pharmacy, University of Porto, Jorge de Viterbo Ferreira 228, 4050-313 Porto, Portugal; (S.C.C.); (J.O.F.); (J.S.)
| | - Jorge Lago
- ANFACO-CECOPESCA, Ctra. Colexio Universitario, 16, 36310 Vigo, Spain; (A.G.C.); (J.L.)
| | - Silvia Muñoz
- Instituto de Investigaciones Marinas, Consejo Superior de Investigaciones Científicas (IIM-CSIC), 36208 Vigo, Spain; (S.M.); (M.L.-C.)
| | - Isabel Pastoriza-Santos
- CINBIO, Campus Universitario As Lagoas, Universidade de Vigo, 36310 Vigo, Spain; (G.B.); (I.P.-S.); (J.P.-J.)
- Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-UVIGO, 36310 Vigo, Spain
| | - Paulo Sousa
- Center for MicroElectromechanical Systems (CMEMS-UMinho), University of Minho, 4800-058 Guimarães, Portugal; (V.P.); (P.S.); (L.G.); (G.M.)
| | - Luís Gonçalves
- Center for MicroElectromechanical Systems (CMEMS-UMinho), University of Minho, 4800-058 Guimarães, Portugal; (V.P.); (P.S.); (L.G.); (G.M.)
| | - Marta López-Cabo
- Instituto de Investigaciones Marinas, Consejo Superior de Investigaciones Científicas (IIM-CSIC), 36208 Vigo, Spain; (S.M.); (M.L.-C.)
| | - Jorge Pérez-Juste
- CINBIO, Campus Universitario As Lagoas, Universidade de Vigo, 36310 Vigo, Spain; (G.B.); (I.P.-S.); (J.P.-J.)
- Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-UVIGO, 36310 Vigo, Spain
| | - João Santos
- LAQV-REQUIMTE, Laboratory of Bromatology and Hidrology, Department of Chemical Sciences, Facultaty of Pharmacy, University of Porto, Jorge de Viterbo Ferreira 228, 4050-313 Porto, Portugal; (S.C.C.); (J.O.F.); (J.S.)
| | - Graça Minas
- Center for MicroElectromechanical Systems (CMEMS-UMinho), University of Minho, 4800-058 Guimarães, Portugal; (V.P.); (P.S.); (L.G.); (G.M.)
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Moreno Osorio JH, Pollio A, Frunzo L, Lens PNL, Esposito G. A Review of Microalgal Biofilm Technologies: Definition, Applications, Settings and Analysis. FRONTIERS IN CHEMICAL ENGINEERING 2021. [DOI: 10.3389/fceng.2021.737710] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Biofilm-based algal cultivation has many advantages over the conventional suspended growth methods and has received increased attention as a potential platform for algal production, wastewater treatment (nutrient removal), and a potential pathway to supply feedstock for microalgae-based biorefinery attempts. However, the attached cultivation by definition and application is a result of a complex interaction between the biotic and abiotic components involved. Therefore, the entire understanding of the biofilm nature is still a research challenge due to the need for real-time analysis of the system. In this review, the state of the art of biofilm definition, its life cycle, the proposed designs of bioreactors, screening of carrier materials, and non-destructive techniques for the study of biofilm formation and performance are summarized. Perspectives for future research needs are also discussed to provide a primary reference for the further development of microalgal biofilm systems.
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Romeu MJ, Domínguez-Pérez D, Almeida D, Morais J, Araújo MJ, Osório H, Campos A, Vasconcelos V, Mergulhão FJ. Quantitative proteomic analysis of marine biofilms formed by filamentous cyanobacterium. ENVIRONMENTAL RESEARCH 2021; 201:111566. [PMID: 34181917 DOI: 10.1016/j.envres.2021.111566] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 06/14/2021] [Accepted: 06/18/2021] [Indexed: 06/13/2023]
Abstract
Cyanobacterial molecular biology can identify pathways that affect the adhesion and settlement of biofouling organisms and, consequently, obtain novel antifouling strategies for marine applications. Proteomic analyses can provide an essential understanding of how cyanobacteria adapt to different environmental settings. However, only a few qualitative studies have been performed in some cyanobacterial strains. Considering the limited knowledge about protein expression in cyanobacteria in different growing conditions, a quantitative proteomic analysis by LC-MS/MS of biofilm cells from a filamentous strain was performed. Biofilms were also analysed through standard methodologies for following cyanobacterial biofilm development. Biofilms were formed on glass and perspex at two relevant hydrodynamic conditions for marine environments (average shear rates of 4 s-1 and 40 s-1). Biofilm development was higher at 4 s-1 and no significant differences were found between surfaces. Proteomic analysis identified 546 proteins and 41 were differentially expressed. Differences in protein expression were more noticeable between biofilms formed on glass and perspex at 4 s-1. When comparing biofilms formed on different surfaces, results suggest that biofilm development may be related to the expression of several proteins like a beta-propeller domain-containing protein, chaperone DnaK, SLH domain-containing proteins, an OMF family outer membrane protein, and/or additional uncharacterized proteins. Regarding the hydrodynamic effect, biofilm development can be related to SOD enzyme expression, to proteins related to photosynthetic processes and to a set of uncharacterized proteins with calcium binding domains, disordered proteins, and others involved in electron transfer activity. Studies that combine distinct approaches are essential for finding new targets for antibiofilm agents. The characterisation performed in this work provides new insights into how shear rate and surface affect cyanobacterial biofilm development and how cyanobacteria adapt to these different environmental settings from a macroscopic standpoint to a proteomics context.
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Affiliation(s)
- M J Romeu
- LEPABE, Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - D Domínguez-Pérez
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - D Almeida
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - J Morais
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - M J Araújo
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - H Osório
- i3S -Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4200-135, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, IPATIMUP, Rua Júlio Amaral de Carvalho 45, 4200-135, Porto, Portugal; Faculty of Medicine, University of Porto, Al. Prof. Hernâni Monteiro, 4200-319, Porto, Portugal
| | - A Campos
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - V Vasconcelos
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal; Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, 4169-007, Porto, Portugal
| | - F J Mergulhão
- LEPABE, Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal.
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Miehle M, Hackbarth M, Gescher J, Horn H, Hille-Reichel A. Biological biogas upgrading in a membrane biofilm reactor with and without organic carbon source. BIORESOURCE TECHNOLOGY 2021; 335:125287. [PMID: 34034065 DOI: 10.1016/j.biortech.2021.125287] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 05/05/2021] [Accepted: 05/09/2021] [Indexed: 06/12/2023]
Abstract
Biogas upgrading is a necessary step to minimize the CO2 of raw biogas and to make it suitable for gas liquefaction or introduction into the national gas grid. Biomethanation is a promising approach since it converts the CO2 to more methane on site, while taking advantage of the organisms responsible for biogas production in the first place. This study investigates the suitability of a pseudo-dead-end membrane biofilm reactor (MBfR) for ex-situ biogas upgrading using biogas as sole carbon source as well as for additional acetoclastic methanation when an organic carbon source is provided. Results prove that the concept of MBfR is especially advantageous for ex-situ hydrogenotrophic methanation of biogas CO2, yielding high product gas qualities of up to 99% methane. It is discussed that cross-flow membrane operation could reduce mass flux of inert methane through membranes, attached biofilms, and reactor liquid, and, thus, improve methanation space time yields.
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Affiliation(s)
- Maximilian Miehle
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, Karlsruhe 76131, Germany
| | - Max Hackbarth
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, Karlsruhe 76131, Germany; DVGW Research Centre at Engler-Bunte-Institut of Karlsruhe Institute of Technology (KIT), Water Chemistry, Engler-Bunte-Ring 9a, Karlsruhe 76131, Germany
| | - Johannes Gescher
- Karlsruhe Institute of Technology (KIT), Institute for Applied Biology (IAB), Fritz-Haber-Weg 2, Karlsruhe 76131, Germany
| | - Harald Horn
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, Karlsruhe 76131, Germany; DVGW Research Centre at Engler-Bunte-Institut of Karlsruhe Institute of Technology (KIT), Water Chemistry, Engler-Bunte-Ring 9a, Karlsruhe 76131, Germany
| | - Andrea Hille-Reichel
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, Karlsruhe 76131, Germany.
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Insights into the Development of Phototrophic Biofilms in a Bioreactor by a Combination of X-ray Microtomography and Optical Coherence Tomography. Microorganisms 2021; 9:microorganisms9081743. [PMID: 34442822 PMCID: PMC8398007 DOI: 10.3390/microorganisms9081743] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 08/06/2021] [Accepted: 08/12/2021] [Indexed: 11/29/2022] Open
Abstract
As productive biofilms are increasingly gaining interest in research, the quantitative monitoring of biofilm formation on- or offline for the process remains a challenge. Optical coherence tomography (OCT) is a fast and often used method for scanning biofilms, but it has difficulty scanning through more dense optical materials. X-ray microtomography (μCT) can measure biofilms in most geometries but is very time-consuming. By combining both methods for the first time, the weaknesses of both methods could be compensated. The phototrophic cyanobacterium Tolypothrix distorta was cultured in a moving bed photobioreactor inside a biocarrier with a semi-enclosed geometry. An automated workflow was developed to process µCT scans of the biocarriers. This allowed quantification of biomass volume and biofilm-coverage on the biocarrier, both globally and spatially resolved. At the beginning of the cultivation, a growth limitation was detected in the outer region of the carrier, presumably due to shear stress. In the later phase, light limitations could be found inside the biocarrier. µCT data and biofilm thicknesses measured by OCT displayed good correlation. The latter could therefore be used to rapidly measure the biofilm formation in a process. The methods presented here can help gain a deeper understanding of biofilms inside a process and detect any limitations.
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Fan X, Zhu SS, Zhang XX, Ren HQ, Huang H. Revisiting the Microscopic Processes of Biofilm Formation on Organic Carriers: A Study under Variational Shear Stresses. ACS APPLIED BIO MATERIALS 2021; 4:5529-5541. [DOI: 10.1021/acsabm.1c00344] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xuan Fan
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Shan-Shan Zhu
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Xu-Xiang Zhang
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Hong-Qiang Ren
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Hui Huang
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
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Lequette K, Ait-Mouheb N, Adam N, Muffat-Jeandet M, Bru-Adan V, Wéry N. Effects of the chlorination and pressure flushing of drippers fed by reclaimed wastewater on biofouling. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 758:143598. [PMID: 33213927 DOI: 10.1016/j.scitotenv.2020.143598] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 10/29/2020] [Accepted: 10/29/2020] [Indexed: 06/11/2023]
Abstract
Milli-channel baffle labyrinths are widely used in drip irrigation systems. They induce a pressure drop enabling drip irrigation. However, with a section thickness that is measured in mm2, they are sensitive to clogging, which reduces the performance and service life of a drip irrigation system. The impact of chlorination (1.5 ppm of free chlorine during 1 h application) and pressure flushing (0.18 MPa) on the biofouling of non-pressure-compensating drippers, fed by real reclaimed wastewater, was studied at lab scale using optical coherence tomography. The effect of these treatments on microbial composition (bacteria and eukaryotes) was also investigated by High-throughput DNA sequencing. Biofouling was mainly observed in the inlet, outlet and return areas of the milli-labyrinth channel from drippers. Chlorination reduced biofilm development, particularly in the mainstream of the milli-labyrinth channel, and it was more efficient when combined with pressure flushing. Moreover, chlorination was more efficient in maintaining water distribution uniformity (CU < 95% compared to less than 85% for unchlorinated lines). It reduced more efficiently the bacterial concentration (≈1 log) and the diversity of the bacterial community in the dripper biofilms compared to the pressure flushing method. Chlorination significantly modified the microbial communities, promoting chlorine-resistant bacteria such as Comamonadaceae or Azospira. Inversely, several bacterial groups were identified as sensitive to chlorination such as Chloroflexi and Planctomycetes. Nevertheless, one month after stopping the treatments bacterial diversity recovered and the chlorine-sensitive bacteria such as Chloroflexi phylum and the Saprospiraceae, Spirochaetaceae, Christensenellaceae and Hydrogenophilaceae families re-emerged in conjunction with the growth of biofouling, highlighting the resilience of the bacteria originating from drippers. Based on PCoA analyses, the structure of the bacterial communities still clustered separately from non-chlorinated drippers, showing that the effect of chlorination was still detectable one month after stopping the treatment.
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Affiliation(s)
- Kévin Lequette
- INRAE, University of Montpellier, LBE, 102, Avenue des Etangs, 11100 Narbonne, France; INRAE, University of Montpellier, UMR G-EAU, Avenue Jean-François Breton, 34000 Montpellier, France
| | - Nassim Ait-Mouheb
- INRAE, University of Montpellier, UMR G-EAU, Avenue Jean-François Breton, 34000 Montpellier, France
| | - Nicolas Adam
- University of Toulouse, Centre de recherche Cerveau et Cognition, 31000 Toulouse, France
| | - Marine Muffat-Jeandet
- INRAE, University of Montpellier, UMR G-EAU, Avenue Jean-François Breton, 34000 Montpellier, France
| | - Valérie Bru-Adan
- INRAE, University of Montpellier, LBE, 102, Avenue des Etangs, 11100 Narbonne, France
| | - Nathalie Wéry
- INRAE, University of Montpellier, LBE, 102, Avenue des Etangs, 11100 Narbonne, France.
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Pratofiorito G, Hackbarth M, Mandel C, Madlanga S, West S, Horn H, Hille-Reichel A. A membrane biofilm reactor for hydrogenotrophic methanation. BIORESOURCE TECHNOLOGY 2021; 321:124444. [PMID: 33285505 DOI: 10.1016/j.biortech.2020.124444] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 11/20/2020] [Accepted: 11/21/2020] [Indexed: 06/12/2023]
Abstract
Biomethanation of CO2 has been proven to be a feasible way to produce methane with the employment of H2 as electron source. Subject of the present study is a custom-made membrane biofilm reactor for hydrogenotrophic methanation by archaeal biofilms cultivated on membrane surfaces. Reactor layout was adapted to allow for in situ biofilm analysis via optical coherence tomography. At a feeding ratio of H2/CO2 of 3.6, and despite the low membrane surface to reactor volume ratio of 57.9 m2 m-3, the maximum methane production per reactor volume reached up to 1.17 Nm3 m-3 d-1 at a methane content of the produced gas above 97% (v/v). These results demonstrate that the concept of membrane bound biofilms enables improved mass transfer by delivering substrate gases directly to the biofilm, thus, rendering the bottleneck of low solubility of hydrogen in water less drastic.
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Affiliation(s)
- Giorgio Pratofiorito
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
| | - Max Hackbarth
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany; DVGW Research Centre at Engler-Bunte-Institut of Karlsruhe Institute of Technology (KIT), Water Chemistry, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
| | - Carmen Mandel
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
| | - Siyavuya Madlanga
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany; DVGW Research Centre at Engler-Bunte-Institut of Karlsruhe Institute of Technology (KIT), Water Chemistry, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
| | - Stephanie West
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
| | - Harald Horn
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany; DVGW Research Centre at Engler-Bunte-Institut of Karlsruhe Institute of Technology (KIT), Water Chemistry, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
| | - Andrea Hille-Reichel
- Karlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131 Karlsruhe, Germany.
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Jung T, Hackbarth M, Horn H, Gescher J. Improving the Cathodic Biofilm Growth Capabilities of Kyrpidia spormannii EA-1 by Undirected Mutagenesis. Microorganisms 2020; 9:microorganisms9010077. [PMID: 33396703 PMCID: PMC7823960 DOI: 10.3390/microorganisms9010077] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 12/23/2020] [Accepted: 12/25/2020] [Indexed: 12/18/2022] Open
Abstract
The biotechnological usage of carbon dioxide has become a relevant aim for future processes. Microbial electrosynthesis is a rather new technique to energize biological CO2 fixation with the advantage to establish a continuous process based on a cathodic biofilm that is supplied with renewable electrical energy as electron and energy source. In this study, the recently characterized cathodic biofilm forming microorganism Kyrpidia spormannii strain EA-1 was used in an adaptive laboratory evolution experiment to enhance its cathodic biofilm growth capabilities. At the end of the experiment, the adapted cathodic population exhibited an up to fourfold higher biofilm accumulation rate, as well as faster substratum coverage and a more uniform biofilm morphology compared to the progenitor strain. Genomic variant analysis revealed a genomically heterogeneous population with genetic variations occurring to various extends throughout the community. Via the conducted analysis we identified possible targets for future genetic engineering with the aim to further optimize cathodic growth. Moreover, the results assist in elucidating the underlying processes that enable cathodic biofilm formation.
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Affiliation(s)
- Tobias Jung
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Max Hackbarth
- Engler-Bunte-Institut, Chair of Water Chemistry and Water Technology, Karlsruhe Institute of Technology (KIT), Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany
| | - Harald Horn
- Engler-Bunte-Institut, Chair of Water Chemistry and Water Technology, Karlsruhe Institute of Technology (KIT), Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany
| | - Johannes Gescher
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
- Institute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
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Pereira TC, Dijkstra RJB, Petridis X, Sharma PK, van de Meer WJ, van der Sluis LWM, de Andrade FB. Chemical and mechanical influence of root canal irrigation on biofilm removal from lateral morphological features of simulated root canals, dentine discs and dentinal tubules. Int Endod J 2020; 54:112-129. [PMID: 32880989 PMCID: PMC7839520 DOI: 10.1111/iej.13399] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 08/26/2020] [Indexed: 01/08/2023]
Abstract
Aim To investigate the anti‐biofilm efficacy of irrigation using a simulated root canal model, the chemical effect of irrigants against biofilms grown on dentine discs and their impact on biofilm viscoelasticity, the efficacy of the irrigants in decontaminating infected dentinal tubules and the capacity of bacteria to regrow. Methodology Biofilm removal, viscoelastic analysis of remaining biofilms and bacterial viability were evaluated using a simulated root canal model with lateral morphological features, dentine discs and a dentinal tubule model, respectively. Experiments were conducted using a two‐phase irrigation protocol. Phase 1: a modified salt solution (RISA) and sodium hypochlorite (NaOCl) were used at a low flow rate to evaluate the chemical action of the irrigants. Ultrasonic activation (US) of a chemically inert solution (buffer) was used to evaluate the mechanical efficacy of irrigation. Phase 2: a final irrigation with buffer at a high flow rate was performed for all groups. Optical coherence tomography (OCT), low load compression testing (LLCT) and confocal scanning laser microscopy analysis were used in the different models. One‐way analysis of variance (anova) was performed for the OCT and LLCT analysis, whilst Kruskal–Wallis and Wilcoxon ranked tests for the dentinal tubule model. Results US and high flow rate removed significantly more biofilm from the artificial lateral canal. For biofilm removal from the artificial isthmus, no significant differences were found between the groups. Within‐group analysis revealed significant differences between the steps of the experiment, with the exception of NaOCl. For the dentine discs, no significant differences regarding biofilm removal and viscoelasticity were detected. In the dentinal tubule model, NaOCl exhibited the greatest anti‐biofilm efficacy. Conclusions The mechanical effect of irrigation is important for biofilm removal. An extra high flow irrigation rate resulted in greater biofilm removal than US in the artificial isthmus. The mechanical effect of US seemed to be more effective when the surface contact biofilm–irrigant was small. After the irrigation procedures, the remaining biofilm could survive after a 5‐day period. RISA and NaOCl seemed to alter post‐treatment remaining biofilms.
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Affiliation(s)
- T C Pereira
- Department of Dentistry, Endodontics and Dental Materials, Bauru School of Dentistry, University of São Paulo, Bauru, Brazil.,Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - R J B Dijkstra
- Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - X Petridis
- Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - P K Sharma
- Department of Biomedical Engineering, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - W J van de Meer
- Department of Orthodontics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - L W M van der Sluis
- Center for Dentistry and Oral Hygiene, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - F B de Andrade
- Department of Dentistry, Endodontics and Dental Materials, Bauru School of Dentistry, University of São Paulo, Bauru, Brazil
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50
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Locke A, Fitzgerald S, Mahadevan-Jansen A. Advances in Optical Detection of Human-Associated Pathogenic Bacteria. Molecules 2020; 25:E5256. [PMID: 33187331 PMCID: PMC7696695 DOI: 10.3390/molecules25225256] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Revised: 11/04/2020] [Accepted: 11/06/2020] [Indexed: 02/06/2023] Open
Abstract
Bacterial infection is a global burden that results in numerous hospital visits and deaths annually. The rise of multi-drug resistant bacteria has dramatically increased this burden. Therefore, there is a clinical need to detect and identify bacteria rapidly and accurately in their native state or a culture-free environment. Current diagnostic techniques lack speed and effectiveness in detecting bacteria that are culture-negative, as well as options for in vivo detection. The optical detection of bacteria offers the potential to overcome these obstacles by providing various platforms that can detect bacteria rapidly, with minimum sample preparation, and, in some cases, culture-free directly from patient fluids or even in vivo. These modalities include infrared, Raman, and fluorescence spectroscopy, along with optical coherence tomography, interference, polarization, and laser speckle. However, these techniques are not without their own set of limitations. This review summarizes the strengths and weaknesses of utilizing each of these optical tools for rapid bacteria detection and identification.
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Affiliation(s)
- Andrea Locke
- Vanderbilt Biophotonics Center, Nashville, TN 37232, USA; (A.L.); (S.F.)
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37232, USA
| | - Sean Fitzgerald
- Vanderbilt Biophotonics Center, Nashville, TN 37232, USA; (A.L.); (S.F.)
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37232, USA
| | - Anita Mahadevan-Jansen
- Vanderbilt Biophotonics Center, Nashville, TN 37232, USA; (A.L.); (S.F.)
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37232, USA
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