1
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Bodnar AK, Newhouse TR. Accessing Z-Enynes via Cobalt-Catalyzed Propargylic Dehydrogenation. Angew Chem Int Ed Engl 2024; 63:e202402638. [PMID: 38591826 DOI: 10.1002/anie.202402638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 03/27/2024] [Accepted: 03/28/2024] [Indexed: 04/10/2024]
Abstract
Alkenes constitute an enabling motif in organic synthesis, as they can be functionalized to form highly substituted molecules. Z-alkenes are generally challenging to access due to the thermodynamic preference for the formation of E-alkenes compared to Z-alkenes. Dehydrogenation methodologies to selectively form Z-alkenes have not yet been reported. Herein, we report a Z-selective, propargylic dehydrogenation that provides 1,3-enynes through the invention of a Co-catalyzed oxidation system. Observation of a kinetic isotope effect (KIE) revealed that deprotonation of the propargylic position is the rate limiting step. Additionally, isomerization experiments were conducted and confirmed that the observed Z-selectivity is a kinetic effect. A proposed stereomechanistic model for the Z-selectivity is included.
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Affiliation(s)
- Alexandra K Bodnar
- Department of Chemistry, Yale University, 225 Prospect St, New Haven, Connecticut, 06520-8107, United States
| | - Timothy R Newhouse
- Department of Chemistry, Yale University, 225 Prospect St, New Haven, Connecticut, 06520-8107, United States
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2
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Barkale HV, Dey N. Tuning Sensing Efficacy of Oligo(phenylenevinylene) Based Chromogenic Probes: Effect of Alkyl Substituents on Metal Ion Detection at Micelle-Water Interface. Chem Asian J 2024; 19:e202400058. [PMID: 38436497 DOI: 10.1002/asia.202400058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 02/15/2024] [Accepted: 02/25/2024] [Indexed: 03/05/2024]
Abstract
In this work, we conducted a comparative analysis of the metal ion sensing capabilities of two pyridine-end oligo p-phenylenevinylene compounds featuring different alkyl substituents (-C4H9 and -C16H33) within a micelle medium. Our findings revealed a correlation between the positioning of the probe molecules within the micelle and the length of the alkyl chains, impacting their self-assembly tendencies and optical characteristics. The compound with shorter alkyl chains demonstrated a superior affinity towards Hg2+ ions, whereas exposure to the compound with longer alkyl substituent resulted in a color-changing response with both Cu2+and Hg2+ ions. Intriguingly, the sensitivity towards Hg2+ ions heightened with increasing alkyl chain length. This trend persisted in non-polar solvents like THF. The capacity to modulate sensing efficacy solely by adjusting the length of the alkyl chains represents a relatively uncommon occurrence in the existing literature. This discovery suggests promising prospects for engineering sensory devices equipped with adaptable sensitivity.
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Affiliation(s)
- Harshal V Barkale
- Department of Chemistry, Birla Institute of Technology and Science Pilani, Hyderabad, 500078, Telangana, India
| | - Nilanjan Dey
- Department of Chemistry, Birla Institute of Technology and Science Pilani, Hyderabad, 500078, Telangana, India
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3
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Rinkovec T, Kalebic D, Dehaen W, Whitelam S, Harvey JN, De Feyter S. On the origin of cooperativity effects in the formation of self-assembled molecular networks at the liquid/solid interface. Chem Sci 2024; 15:6076-6087. [PMID: 38665531 PMCID: PMC11041291 DOI: 10.1039/d4sc00284a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Accepted: 03/12/2024] [Indexed: 04/28/2024] Open
Abstract
In this work we investigate the behaviour of molecules at the nanoscale using scanning tunnelling microscopy in order to explore the origin of the cooperativity in the formation of self-assembled molecular networks (SAMNs) at the liquid/solid interface. By studying concentration dependence of alkoxylated dimethylbenzene, a molecular analogue to 5-alkoxylated isophthalic derivatives, but without hydrogen bonding moieties, we show that the cooperativity effect can be experimentally evaluated even for low-interacting systems and that the cooperativity in SAMN formation is its fundamental trait. We conclude that cooperativity must be a local effect and use the nearest-neighbor Ising model to reproduce the coverage vs. concentration curves. The Ising model offers a direct link between statistical thermodynamics and experimental parameters, making it a valuable tool for assessing the thermodynamics of SAMN formation.
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Affiliation(s)
- Tamara Rinkovec
- Department of Chemistry, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
| | - Demian Kalebic
- Department of Chemistry, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
| | - Wim Dehaen
- Department of Chemistry, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
| | - Stephen Whitelam
- Molecular Foundry, Lawrence Berkeley National Laboratory 1 Cyclotron Road Berkeley CA 94720 USA
| | - Jeremy N Harvey
- Department of Chemistry, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
| | - Steven De Feyter
- Department of Chemistry, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
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4
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Stähler C, Reynaerts R, Rinkovec T, Verstraete L, Heideman GH, Minoia A, Harvey JN, Mali KS, De Feyter S, Feringa BL. Highly Ordered Co-Assembly of Bisurea Functionalized Molecular Switches at the Solid-Liquid Interface. Chemistry 2024:e202303994. [PMID: 38323675 DOI: 10.1002/chem.202303994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Indexed: 02/08/2024]
Abstract
Immobilization of stimulus-responsive systems on solid surfaces is beneficial for controlled signal transmission and adaptive behavior while allowing the characterization of the functional interface with high sensitivity and high spatial resolution. Positioning of the stimuli-responsive units with nanometer-scale precision across the adaptive surface remains one of the bottlenecks in the extraction of cooperative function. Nanoscale organization, cooperativity, and amplification remain key challenges in bridging the molecular and the macroscopic worlds. Here we report on the design, synthesis, and scanning tunneling microscopy (STM) characterization of overcrowded alkene photoswitches merged in self-assembled networks physisorbed at the solid-liquid interface. A detailed anchoring strategy that ensures appropriate orientation of the switches with respect to the solid surface through the use of bis-urea groups is presented. We implement a co-assembly strategy that enables the merging of the photoswitches within physisorbed monolayers of structurally similar 'spacer' molecules. The self-assembly of the individual components and the co-assemblies was examined in detail using (sub)molecular resolution STM which confirms the robust immobilization and controlled orientation of the photoswitches within the spacer monolayers. The experimental STM data is supported by detailed molecular mechanics (MM) simulations. Different designs of the switches and the spacers were investigated which allowed us to formulate guidelines that enable the precise organization of the photoswitches in crystalline physisorbed self-assembled molecular networks.
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Affiliation(s)
- Cosima Stähler
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Robby Reynaerts
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
| | - Tamara Rinkovec
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
| | - Lander Verstraete
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
- imec, Kapeldreef 75, 3001, Leuven, Belgium
| | - G Henrieke Heideman
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Andrea Minoia
- Laboratory for Chemistry of Novel Materials, Materials Research Institute, University of Mons, Place du Parc 20, 7000, Mons, Belgium
| | - Jeremy N Harvey
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
| | - Kunal S Mali
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
| | - Steven De Feyter
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001, Leuven, Belgium
| | - Ben L Feringa
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
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5
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Liu S, Norikane Y, Kikkawa Y. Two-dimensional molecular networks at the solid/liquid interface and the role of alkyl chains in their building blocks. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2023; 14:872-892. [PMID: 37674543 PMCID: PMC10477993 DOI: 10.3762/bjnano.14.72] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 07/25/2023] [Indexed: 09/08/2023]
Abstract
Nanoarchitectonics has attracted increasing attention owing to its potential applications in nanomachines, nanoelectronics, catalysis, and nanopatterning, which can contribute to overcoming global problems related to energy and environment, among others. However, the fabrication of ordered nanoarchitectures remains a challenge, even in two dimensions. Therefore, a deeper understanding of the self-assembly processes and substantial factors for building ordered structures is critical for tailoring flexible and desirable nanoarchitectures. Scanning tunneling microscopy is a powerful tool for revealing the molecular conformations, arrangements, and orientations of two-dimensional (2D) networks on surfaces. The fabrication of 2D assemblies involves non-covalent interactions that play a significant role in the molecular arrangement and orientation. Among the non-covalent interactions, dispersion interactions that derive from alkyl chain units are believed to be weak. However, alkyl chains play an important role in the adsorption onto substrates, as well as in the in-plane intermolecular interactions. In this review, we focus on the role of alkyl chains in the formation of ordered 2D assemblies at the solid/liquid interface. The alkyl chain effects on the 2D assemblies are introduced together with examples documented in the past decades.
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Affiliation(s)
- Suyi Liu
- Graduate School of Science and Technology, University of Tsukuba, Ibaraki, 305-8571, Japan
- National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Yasuo Norikane
- National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
- Faculty of Pure and Applied Sciences, University of Tsukuba, Ibaraki, 305-8571, Japan
| | - Yoshihiro Kikkawa
- National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
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6
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Graphene transistors for real-time monitoring molecular self-assembly dynamics. Nat Commun 2020; 11:4731. [PMID: 32948763 PMCID: PMC7501237 DOI: 10.1038/s41467-020-18604-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Accepted: 08/28/2020] [Indexed: 01/17/2023] Open
Abstract
Mastering the dynamics of molecular assembly on surfaces enables the engineering of predictable structural motifs to bestow programmable properties upon target substrates. Yet, monitoring self-assembly in real time on technologically relevant interfaces between a substrate and a solution is challenging, due to experimental complexity of disentangling interfacial from bulk phenomena. Here, we show that graphene devices can be used as highly sensitive detectors to read out the dynamics of molecular self-assembly at the solid/liquid interface in-situ. Irradiation of a photochromic molecule is used to trigger the formation of a metastable self-assembled adlayer on graphene and the dynamics of this process are monitored by tracking the current in the device over time. In perspective, the electrical readout in graphene devices is a diagnostic and highly sensitive means to resolve molecular ensemble dynamics occurring down to the nanosecond time scale, thereby providing a practical and powerful tool to investigate molecular self-organization in 2D. Molecular self-assembly provides the desired functions to substrates, but investigation and control of its dynamics is challenging for the large area over which it must be detected. Here the authors report the use of graphene field effect devices to monitor with sub-second time resolution the photoinduced supramolecular assembly of a spiropyran derivative on graphene, covering an area of 100 × 100 μm2.
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7
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Dela Cruz Calupitan JP, Galangau O, Nakashima T, Kawai T, Rapenne G. Photochromic Diarylethenes Designed for Surface Deposition: From Self-Assembled Monolayers to Single Molecules. Chempluschem 2020; 84:564-577. [PMID: 31944023 DOI: 10.1002/cplu.201800640] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 02/06/2019] [Indexed: 11/05/2022]
Abstract
The efficient switching that can occur between two stable isomers of diarylethenes makes them particularly promising targets for opto- and molecular electronics. To examine these classes of molecules for electronics applications, they have been subjected to a series of scanning tunneling microscopy (STM) experiments, which are the focus of this Review. A brief introduction to the chemical design of diarylethenes in terms of their switching capabilities along with the basics of STM are presented. Next, initial STM studies on these compounds under ambient conditions are discussed. An overview of how molecular design affects the isomerization and self-assembly of diarylethenes at the solid-liquid interface as investigated by STM is then presented, as well as single-molecule studies under ultrahigh vacuum. The last section presents further prospects for molecular design in the field.
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Affiliation(s)
- Jan Patrick Dela Cruz Calupitan
- Division of Materials Science, Nara Institute of Science and Technology 8916-5 Takayama-cho, Ikoma, Nara, 630-0192, Japan.,International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, 29 rue Marvig, 31055, Toulouse, France.,Université de Toulouse CNRS, 29 rue Marvig, 31055, Toulouse, France
| | - Olivier Galangau
- Division of Materials Science, Nara Institute of Science and Technology 8916-5 Takayama-cho, Ikoma, Nara, 630-0192, Japan.,International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, 29 rue Marvig, 31055, Toulouse, France
| | - Takuya Nakashima
- Division of Materials Science, Nara Institute of Science and Technology 8916-5 Takayama-cho, Ikoma, Nara, 630-0192, Japan
| | - Tsuyoshi Kawai
- Division of Materials Science, Nara Institute of Science and Technology 8916-5 Takayama-cho, Ikoma, Nara, 630-0192, Japan.,International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, 29 rue Marvig, 31055, Toulouse, France
| | - Gwénaël Rapenne
- Division of Materials Science, Nara Institute of Science and Technology 8916-5 Takayama-cho, Ikoma, Nara, 630-0192, Japan.,International Collaborative Laboratory for Supraphotoactive Systems, NAIST-CEMES, 29 rue Marvig, 31055, Toulouse, France.,Université de Toulouse CNRS, 29 rue Marvig, 31055, Toulouse, France
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8
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Zhao H, Yang Q, Wang Z, Zhao H, Liu B, Chen Q, Dong M. Fabrication of 2D Hetero-Complexes With Nucleic-Acid-Base Adenine and Fatty-Acid Stearic Acid at Liquid/Solid Interface. Front Chem 2019; 7:513. [PMID: 31403041 PMCID: PMC6669938 DOI: 10.3389/fchem.2019.00513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2019] [Accepted: 07/04/2019] [Indexed: 02/05/2023] Open
Abstract
Designing and fabricating hetero-complexes composed of organic and biological compounds had become an exciting area referring to biological recognition, molecular devices etc. Here, hydrogen-bonded complex of nucleic-acid-base (adenine, A) and fatty-acid (stearic acid, SA) was designed, fabricated and investigated at liquid/solid interface. The interesting striped-shaped structure composed of SA-A-SA trimers was formed after introducing adenine molecules. Meanwhile, the primary lamella-shape characteristic of the assembly of SA molecules was kept because of the collaboration of non-covalent interactions of molecule-molecule and molecule-substrate. With a series of experimental characterization and theoretical simulation, the origination of the as-prepared 2D hetero-complexes was gradually exhibited from the assembled structures of two building blocks of stearic acid and adenine. Our study provides a blueprint for designing additional multi-component complexes based on the existing molecular assembled architectures.
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Affiliation(s)
- Huiling Zhao
- School of Physics and Electronics, Henan University, Kaifeng, China.,Interdisciplinary Nanoscience Centre (iNANO), Sino-Danish Center for Education and Research (SDC), Aarhus University, Aarhus, Denmark
| | - Qian Yang
- Interdisciplinary Nanoscience Centre (iNANO), Sino-Danish Center for Education and Research (SDC), Aarhus University, Aarhus, Denmark
| | - Zegao Wang
- Interdisciplinary Nanoscience Centre (iNANO), Sino-Danish Center for Education and Research (SDC), Aarhus University, Aarhus, Denmark.,College of Materials Science and Engineering, Sichuan University, Chengdu, China
| | - Hang Zhao
- State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China
| | - Bo Liu
- School of Physics and Electronics, Henan University, Kaifeng, China
| | - Qianming Chen
- State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China
| | - Mingdong Dong
- Interdisciplinary Nanoscience Centre (iNANO), Sino-Danish Center for Education and Research (SDC), Aarhus University, Aarhus, Denmark
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9
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Nishitani N, Hirose T, Matsuda K. Self-assembly of photochromic diarylethene-peptide conjugates stabilized by β-sheet formation at the liquid/graphite interface. Chem Commun (Camb) 2019; 55:5099-5102. [PMID: 30968929 DOI: 10.1039/c9cc02093d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two-dimensional (2-D) self-assembly of diarylethene (DAE)-peptide conjugates at the octanoic acid/graphite interface was investigated by scanning tunnelling microscopy (STM). The open-ring isomer of a DAE-peptide conjugate formed a stable 2-D molecular assembly with an antiparallel β-sheet structure. Quantitative analysis of surface coverage depending on concentration revealed a stronger stabilization effect of the oligopeptide than that of the alkyl group with a similar side chain length.
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Affiliation(s)
- Nobuhiko Nishitani
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan.
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10
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Nishitani N, Hirose T, Matsuda K. 2-D Self-assembly of Alkyl-substituted Oligophenylene Derivatives at the Liquid/Solid Interface: Influence of Core Size and Hydrogen Bonds on the Nucleation–Elongation Process. CHEM LETT 2019. [DOI: 10.1246/cl.180944] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Nobuhiko Nishitani
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Takashi Hirose
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Kenji Matsuda
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
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11
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Kawai S, Kuni M, Sugiyasu K. Regression Analysis for Nucleation-Elongation Model of Supramolecular Assembly: How To Determine Nucleus Size. J Phys Chem B 2018; 122:9592-9604. [PMID: 30216068 DOI: 10.1021/acs.jpcb.8b07651] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Nucleation-elongation is known to give satisfactory descriptions of many supramolecular polymerization systems in thermal equilibrium. Its key feature is the necessity to form a "nucleus" consisting of a certain number of monomer units before being able to grow into a longer polymer chain. The size of the nucleus has significant implications for the understanding of the supramolecular polymerization mechanism. Here we investigate how experiments can give information on the nucleus size by regression analysis of various types of measurements. The measurements of free monomer concentrations, diffusion coefficients, and calorimetric response as functions of concentration or temperature are considered. The nucleation-elongation model with a general value for the nucleus size is used to provide mathematical expressions for these experimental observables. Numerical experiments are performed where experimental errors are simulated by computer-generated random numbers, and it is investigated whether least-squares fitting analyses can give the correct values of the nucleus size in the presence of experimental errors. It is recommended that the calorimetric measurements such as differential scanning calorimetry (DSC) or isothermal titration calorimetry (ITC) be performed under various conditions to correctly determine the nucleus size experimentally.
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Affiliation(s)
- Shinnosuke Kawai
- Department of Chemistry, Faculty of Science , Shizuoka University , 836 Ohya, Suruga-ku , Shizuoka 422-8529 , Japan
| | - Mikako Kuni
- Department of Chemistry, Faculty of Science , Shizuoka University , 836 Ohya, Suruga-ku , Shizuoka 422-8529 , Japan
| | - Kazunori Sugiyasu
- Molecular Design & Function Group , National Institute for Material Science , 1-2-1 Sengen , Tsukuba , Ibaraki 305-0047 , Japan
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12
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Frath D, Yokoyama S, Hirose T, Matsuda K. Photoresponsive supramolecular self-assemblies at the liquid/solid interface. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C: PHOTOCHEMISTRY REVIEWS 2018. [DOI: 10.1016/j.jphotochemrev.2017.12.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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13
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Nishitani N, Hirose T, Matsuda K. Influence of Multidirectional Interactions on Domain Size and Shape of 2-D Molecular Assemblies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:9151-9159. [PMID: 28783345 DOI: 10.1021/acs.langmuir.7b02094] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The effect of molecule-molecule interactions on the size and shape of two-dimensional (2-D) ordering domains was investigated using scanning tunneling microscopy (STM) at the liquid/solid interface. Synthesized alkoxybenzene derivatives bearing amide group tend to form very large domains of 2-D orderings (>0.25 μm2), whereas the domain size of corresponding urea derivatives was significantly small in the same condition. The quantitative analysis of the concentration dependence of surface coverage using a nucleation-elongation model suggests that the replacement of amide functionality by urea increased the equilibrium constant of the nucleation process of 2-D self-assembly, which is a key factor for the domain size at the liquid/solid interface. Interestingly, the STM observation revealed that a slight difference of molecular structure influences the shape of 2-D ordering domains, and needle-shaped domains with large aspect ratio around 10 were observed by tuning molecule-molecule intramolecular interactions in 2-D self-assembly formed at a liquid/graphite interface.
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Affiliation(s)
- Nobuhiko Nishitani
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University , Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Takashi Hirose
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University , Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Kenji Matsuda
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University , Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
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14
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Dela Cruz Calupitan JP, Galangau O, Guillermet O, Coratger R, Nakashima T, Rapenne G, Kawai T. Synthesis and Photochromism of Chloro- and tert
-Butyl-Functionalized Terarylene Derivatives for Surface Deposition. European J Org Chem 2017. [DOI: 10.1002/ejoc.201601657] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Jan Patrick Dela Cruz Calupitan
- CEMES-CNRS (UPR 8011); NAIST-CEMES International Collaborative Laboratory; 29 rue Jeanne Marvig, BP94347 31055 Toulouse France
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma, Nara Japan
- Université de Toulouse; 29 rue Marvig, BP94347 31055 Toulouse Cedex 4 France
| | - Olivier Galangau
- CEMES-CNRS (UPR 8011); NAIST-CEMES International Collaborative Laboratory; 29 rue Jeanne Marvig, BP94347 31055 Toulouse France
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma, Nara Japan
| | - Olivier Guillermet
- Université de Toulouse; 29 rue Marvig, BP94347 31055 Toulouse Cedex 4 France
| | - Roland Coratger
- Université de Toulouse; 29 rue Marvig, BP94347 31055 Toulouse Cedex 4 France
| | - Takuya Nakashima
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma, Nara Japan
| | - Gwénaël Rapenne
- CEMES-CNRS (UPR 8011); NAIST-CEMES International Collaborative Laboratory; 29 rue Jeanne Marvig, BP94347 31055 Toulouse France
- Université de Toulouse; 29 rue Marvig, BP94347 31055 Toulouse Cedex 4 France
| | - Tsuyoshi Kawai
- CEMES-CNRS (UPR 8011); NAIST-CEMES International Collaborative Laboratory; 29 rue Jeanne Marvig, BP94347 31055 Toulouse France
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma, Nara Japan
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15
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Control over differentiation of a metastable supramolecular assembly in one and two dimensions. Nat Chem 2016; 9:493-499. [PMID: 28430199 DOI: 10.1038/nchem.2684] [Citation(s) in RCA: 335] [Impact Index Per Article: 41.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 10/24/2016] [Indexed: 12/24/2022]
Abstract
Molecular self-assembly under kinetic control is expected to yield nanostructures that are inaccessible through the spontaneous thermodynamic process. Moreover, time-dependent evolution, which is reminiscent of biomolecular systems, may occur under such out-of-equilibrium conditions, allowing the synthesis of supramolecular assemblies with enhanced complexities. Here we report on the capacity of a metastable porphyrin supramolecular assembly to differentiate into nanofibre and nanosheet structures. Mechanistic studies of the relationship between the molecular design and pathway complexity in the self-assembly unveiled the energy landscape that governs the unique kinetic behaviour. Based on this understanding, we could control the differentiation phenomena and achieve both one- and two-dimensional living supramolecular polymerization using an identical monomer. Furthermore, we found that the obtained nanostructures are electronically distinct, which illustrates the pathway-dependent material properties.
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16
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Takai A, Kajitani T, Fukushima T, Kishikawa K, Yasuda T, Takeuchi M. Supramolecular Assemblies of Ferrocene-Hinged Naphthalenediimides: Multiple Conformational Changes in Film States. J Am Chem Soc 2016; 138:11245-53. [PMID: 27564327 DOI: 10.1021/jacs.6b05824] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
We design a new naphthalenediimide (NDI) π-system, NDI-Fc-NDI, having a ferrocene linker as a hinge unit and long alkyl chains as supramolecular assembling units. The NDI units are "directionally flexible" in concert with the pivoting motion of the ferrocene unit with a small rotational barrier. The NDI units rotate around the ferrocene unit faster than the NMR time scale in solution at room temperature. UV-vis absorption, synchrotron X-ray diffraction, and atomic force microscope studies reveal that NDI-Fc-NDI forms a fibrous supramolecular assembly in solution (methylcyclohexane and highly concentrated chloroform) and film states, wherein the NDI units are in the slipped-stack conformation. The NDI-Fc-NDI supramolecular assembly in the film state exhibits multiple phase transitions associated with conformational changes at different temperatures, which are confirmed by differential scanning calorimetry, polarized optical microscopy, and temperature-dependent X-ray diffraction. Such thermal transitions of NDI-Fc-NDI films also induce changes in the optical and electronic properties as revealed by UV-vis absorption and photoelectron yield spectroscopies, respectively. The thermal behaviors of NDI-Fc-NDI, realized by the unique molecular design, are considerably different from the reference compounds such as an NDI dimer connected with a flexible 1,4-butylene linker. These results provide us with a plausible strategy to propagate the molecular dynamics of the π-system into macroscopic properties in film states; the key factors are (i) the supramolecular alignment of molecular switching units and (ii) the directional motion of the switching units perpendicular to the supramolecular axis.
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Affiliation(s)
- Atsuro Takai
- International Center for Young Scientists, Semiconductor Nano-interfaces Group, and Molecular Design & Function Group, National Institute for Materials Science (NIMS) , 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
| | - Takashi Kajitani
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology , 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan.,RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan
| | - Takanori Fukushima
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology , 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Keiki Kishikawa
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, Chiba University , 1-33 Yayoi-cho, Inage-ku, Chiba 263-8522, Japan
| | - Takeshi Yasuda
- International Center for Young Scientists, Semiconductor Nano-interfaces Group, and Molecular Design & Function Group, National Institute for Materials Science (NIMS) , 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
| | - Masayuki Takeuchi
- International Center for Young Scientists, Semiconductor Nano-interfaces Group, and Molecular Design & Function Group, National Institute for Materials Science (NIMS) , 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
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Affiliation(s)
- A. Subha Mahadevi
- Centre for Molecular Modelling, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad, India 500607
| | - G. Narahari Sastry
- Centre for Molecular Modelling, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad, India 500607
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