1
|
Dwivedi KC, Sabharwal G, Kote BS, Balakrishna MS. Ni II, Pd II and Pt II pincer complexes of 2-(diphenylphosphanyl)- N-(2-(diphenyl-phosphanyl)benzyl)benzamide: synthesis, reactivity and catalytic studies. Dalton Trans 2024. [PMID: 39453671 DOI: 10.1039/d4dt02611j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2024]
Abstract
In this article, the synthesis of bis(phosphine), o-Ph2PC6H4C(O)N(H)CH2C6H4PPh2-o (1) (hereafter referred to as "PCNHCP" and its anionic form as "PCNCP") and its group 10 metal chemistry and catalytic studies are described. PCNHCP (1) on reaction with NiCl2(DME) and PdCl2(COD) afforded pincer complexes, [MCl{(PCNCP)κ3-P,N,P}] (M = Ni, 2; Pd, 3). A similar reaction of 1 with PtCl2(COD) yielded a chelate complex, [PtCl2{(PCNHCP)κ2-P,P}] (4), which on further treatment with LiHMDS produced the 1,2-azaphospholene-phosphine complex, [PtCl(Ph){(o-P(Ph)C6H4CONCH2C6H4PPh2-o)κ2-P,P}] (5) via P-C/P-N bond metathesis. Passing dry HCl gas through the solution of 5 resulted in benzene elimination to form [PtCl2{(o-P(Ph)C6H4CONCH2C6H4PPh2-o)κ2-P,P}] (6). Treatment of 1 with PtCl2(COD) and Pt(Cl)(Me)(COD) in the presence of a base resulted in pincer complexes [PtX{(PCNCP)κ3-P,N,P}] (X = Cl, 7; Me, 8). Nickel complex 2 catalyzed the Suzuki-Miyaura cross coupling reaction between bromobenzene and phenyl boronic acid to give the corresponding biphenyls in good yield. The platinum complex 5 showed good catalytic activity towards regio- and stereoselective hydroboration of terminal alkynes. Both the catalytic reactions were performed under mild reaction conditions with a very low catalyst loading.
Collapse
Affiliation(s)
- Khilesh C Dwivedi
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology, Bombay, Powai, Mumbai 400076, India.
| | - Gazal Sabharwal
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology, Bombay, Powai, Mumbai 400076, India.
| | - Basvaraj S Kote
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology, Bombay, Powai, Mumbai 400076, India.
| | - Maravanji S Balakrishna
- Phosphorus Laboratory, Department of Chemistry, Indian Institute of Technology, Bombay, Powai, Mumbai 400076, India.
| |
Collapse
|
2
|
Shi C, Cheng Z, Leonardi A, Yang Y, Engel M, Jones MR, Han Y. Preserving surface strain in nanocatalysts via morphology control. SCIENCE ADVANCES 2024; 10:eadp3788. [PMID: 39321292 PMCID: PMC11423881 DOI: 10.1126/sciadv.adp3788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 08/19/2024] [Indexed: 09/27/2024]
Abstract
Engineering strain critically affects the properties of materials and has extensive applications in semiconductors and quantum systems. However, the deployment of strain-engineered nanocatalysts faces challenges, in particular in maintaining highly strained nanocrystals under reaction conditions. Here, we introduce a morphology-dependent effect that stabilizes surface strain even under harsh reaction conditions. Using four-dimensional scanning transmission electron microscopy (4D-STEM), we found that cube-shaped core-shell Au@Pd nanoparticles with sharp-edged morphologies sustain coherent heteroepitaxial interfaces with larger critical thicknesses than morphologies with rounded edges. This configuration inhibits dislocation nucleation due to reduced shear stress at corners, as indicated by molecular dynamics simulations. A Suzuki-type cross-coupling reaction shows that our approach achieves a fourfold increase in activity over conventional nanocatalysts, owing to the enhanced stability of surface strain. These findings contribute to advancing the development of advanced nanocatalysts and indicate broader applications for strain engineering in various fields.
Collapse
Affiliation(s)
- Chuqiao Shi
- Department of Materials Science and NanoEngineering, Rice University, Houston, TX 77006, USA
| | - Zhihua Cheng
- Department of Chemistry, Rice University, Houston, TX 77006, USA
| | - Alberto Leonardi
- Diamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, UK
- Institute for Multiscale Simulation, IZNF, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany
- Department of Earth and Atmospheric Sciences, Indiana University, 1001 East 10th Street, Bloomington, IN 47405, USA
| | - Yao Yang
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14850, USA
| | - Michael Engel
- Institute for Multiscale Simulation, IZNF, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany
| | - Matthew R Jones
- Department of Materials Science and NanoEngineering, Rice University, Houston, TX 77006, USA
- Department of Chemistry, Rice University, Houston, TX 77006, USA
| | - Yimo Han
- Department of Materials Science and NanoEngineering, Rice University, Houston, TX 77006, USA
| |
Collapse
|
3
|
Ma Q, Wang F, Zhang P, Li G, Li Y, Xu X, Jin Z. Pd(0)/Xantphos-Catalyzed Benzylic C(sp 3)-O Arylation of Benzyl Heteroaryl Ethers: Reduction of Pd(II) to Pd(0) by Xantphos. J Org Chem 2024; 89:13703-13708. [PMID: 39197853 DOI: 10.1021/acs.joc.4c00966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2024]
Abstract
Herein, we report the synthesis of 1,1-diarylmethanes via palladium-catalyzed benzylic C(sp3)-O arylation of benzyl alcohol derivatives. An efficient, straightforward approach to synthesizing Pd(0)(xantphos)2 was developed through in situ reduction of Pd(II) to Pd(0) with the bidentate tertiary phosphine xantphos, which proved to be a highly active precatalyst in the Suzuki-Miyaura cross-coupling reaction of benzyl heteroaryl ethers.
Collapse
Affiliation(s)
- Qingxue Ma
- College of Chemistry, National Engineering Research Center of Pesticide, State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Fengdong Wang
- College of Chemistry, Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education), Nankai University, Tianjin 300071, China
| | - Pengfei Zhang
- College of Chemistry, National Engineering Research Center of Pesticide, State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Guoshuai Li
- College of Chemistry, National Engineering Research Center of Pesticide, State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Yang Li
- College of Chemistry, National Engineering Research Center of Pesticide, State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Xiaohua Xu
- College of Chemistry, National Engineering Research Center of Pesticide, State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Zhong Jin
- College of Chemistry, National Engineering Research Center of Pesticide, State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
- Key Laboratory of Xinjiang Native Medicinal and Edible Plant Resource Chemistry, College of Chemistry and Environmental Sciences, Kashi University, Kashgar 844000, China
| |
Collapse
|
4
|
Sun Y, Zhao T, Wang H, Pan Y, Huang L, Feng H. Precision Propargylic Substitution Reaction: Pd-Catalyzed Suzuki-Miyaura Coupling of Nonactivated Propargylamines with Boronic Acids. J Org Chem 2024; 89:13774-13781. [PMID: 39215753 DOI: 10.1021/acs.joc.4c01519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Palladium-catalyzed Suzuki-Miyaura cross-coupling is an efficient approach for C-C bond construction. Here we report a deaminative Suzuki-Miyaura reaction to achieve chemo- and regioselectivity in the cross-coupling of nonactivated propargylamines with boronic acids, in which methyl propiolate is introduced to promote the cleavage of the C-N bond to form the C-C bond. This method features a wide range of substrates, good functional group tolerance, and ease of operation, providing an alternative approach to accessing valuable propargylated aromatic compounds.
Collapse
Affiliation(s)
- Yan Sun
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, Shanghai 201620, China
| | - Tao Zhao
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, Shanghai 201620, China
| | - Haixiang Wang
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, Shanghai 201620, China
| | - Ya Pan
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, Shanghai 201620, China
| | - Liliang Huang
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, Shanghai 201620, China
| | - Huangdi Feng
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, Shanghai 201620, China
| |
Collapse
|
5
|
Lu J, Celuszak H, Paci I, Leitch DC. Interrogating Explicit Solvent Effects on the Mechanism and Site-Selectivity of Aryl Halide Oxidative Addition to L 2Pd(0). Chemistry 2024:e202402283. [PMID: 39160135 DOI: 10.1002/chem.202402283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 08/02/2024] [Accepted: 08/16/2024] [Indexed: 08/21/2024]
Abstract
We report a study of solvent effects on the rate, selectivity, and mechanism of (hetero)aryl (pseudo)halide oxidative addition to Pd(PCy3)2 as an exemplar of L2Pd(0) species. First, 2-chloro-3-aminopyridine is observed to undergo faster oxidative addition in toluene compared to more polar solvents, which is not consistent with the trend we observe with many other 2-halopyridines. We attribute this to solvent basicity hydrogen bonding between solvent and substrate. Greater hydrogen bond donation from the substrate leads to a more electron-rich aromatic system, and therefore slower oxidative addition. We demonstrate how this affects rate and site-selectivity for hydrogen bond donating substrates. Second, electron-deficient multihalogenated pyridines exhibit improved site-selectivity in polar solvents, which we attribute to different C-X sites undergoing oxidative addition by two different mechanisms. The C-X site that favours the more polar nucleophilic displacement transition state is preferred over the site that favours a less-polar 3-centered transition state. Finally, (hetero)aryl triflates consistently undergo faster oxidative addition in more polar solvents, which we attribute to highly polar nucleophilic displacement transition states. This leads to improved site-selectivity for C-OTf oxidative addition, even in the presence of highly reactive 2-pyridyl halides.
Collapse
Affiliation(s)
- Jingru Lu
- Department of Chemistry, University of Victoria, 3800 Finnerty Rd., Victoria, BC V8P 5 C2, Canada
| | - Holly Celuszak
- Department of Chemistry, University of Victoria, 3800 Finnerty Rd., Victoria, BC V8P 5 C2, Canada
| | - Irina Paci
- Department of Chemistry, University of Victoria, 3800 Finnerty Rd., Victoria, BC V8P 5 C2, Canada
| | - David C Leitch
- Department of Chemistry, University of Victoria, 3800 Finnerty Rd., Victoria, BC V8P 5 C2, Canada
| |
Collapse
|
6
|
Shi Y, Derasp JS, Guzman SM, Patrick BO, Hein JE. Halide Salts Alleviate TMSOK Inhibition in Suzuki-Miyaura Cross-Couplings. ACS Catal 2024; 14:12671-12680. [PMID: 39169912 PMCID: PMC11334106 DOI: 10.1021/acscatal.4c02407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 07/28/2024] [Accepted: 07/29/2024] [Indexed: 08/23/2024]
Abstract
The Suzuki-Miyaura cross-coupling (SMC) remains one of the most widely used transformations available to chemists. Recently, robust new conditions achieving rapid reactivity under homogeneous aprotic conditions enabled by the use of potassium trimethylsilanolate (TMSOK) as a base were reported. However, the strong inhibitory effect of TMSOK restricts the generality of such conditions. Moreover, the basic nature of TMSOK impedes the use of protic heterocycles as substrates, as these latter anionic species are even more potent catalyst inhibitors. Herein, we report a thorough mechanistic study of these novel SMC conditions. Halide salt additives were found to provide a dramatic rate acceleration and mitigate the inhibitory effect of TMSOK. NMR experiments revealed that this is largely achieved by impacting the unexpected formation of inactive [LnPd(Ar)(μ-OH)]2, favoring the formation of active LnPd(Ar)(X) instead. These findings enabled an impressive substrate scope even at low catalyst loadings (0.1 mol %). Finally, halide additives were observed to enable the use of protic heterocyclic substrates, which could otherwise completely inhibit reactivity.
Collapse
Affiliation(s)
- Yao Shi
- Department
of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - Joshua S. Derasp
- Department
of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - Sara M. Guzman
- Department
of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - Brian O. Patrick
- Department
of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - Jason E. Hein
- Department
of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Department
of Chemistry, University of Bergen, Allégaten 41, N-5007 Bergen, Norway
- Acceleration
Consortium, University of Toronto, Toronto, Ontario M5G 3H6, Canada
| |
Collapse
|
7
|
Sarmah D, Choudhury A, Bora U. Palladium nanoparticle catalyzed synthesis of indoles via intramolecular Heck cyclisation. Org Biomol Chem 2024; 22:6419-6431. [PMID: 39069947 DOI: 10.1039/d4ob01177e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
A system utilizing palladium(II)-PEG has been devised for the intramolecular Heck cyclization of N-vinyl and N-allyl-2-haloanilines. The synthesis of a variety of indoles, including 2,3-diester substituted ones and 3-methyl indoles, has been accomplished using this catalytic system. The N-vinyl starting materials are obtained by the aza-Michael addition of 2-haloanilines with alkynecarboxylate esters, which, upon cyclization, yield ester-substituted indoles. Conversely, N-allyl-2-haloanilines yield 3-methylated indoles as the major products. The high activity of the system is owed to the in situ generation of Pd nanoparticles.
Collapse
Affiliation(s)
- Debasish Sarmah
- Dept of Chemical Sciences, Tezpur University, Napam, Sonitpur, Assam, India.
- Department of Chemistry, Dakshin Kamup College, Mirza, Kamrup, Assam, India
| | - Anup Choudhury
- Department of Chemistry, Handique Girls' College, Guwahati, Assam, India
| | - Utpal Bora
- Dept of Chemical Sciences, Tezpur University, Napam, Sonitpur, Assam, India.
| |
Collapse
|
8
|
Riley C, Ammar U, Alsfouk A, Anthony NG, Baiget J, Berretta G, Breen D, Huggan J, Lawson C, McIntosh K, Plevin R, Suckling CJ, Young LC, Paul A, Mackay SP. Design and Synthesis of Novel Aminoindazole-pyrrolo[2,3- b]pyridine Inhibitors of IKKα That Selectively Perturb Cellular Non-Canonical NF-κB Signalling. Molecules 2024; 29:3515. [PMID: 39124921 PMCID: PMC11314561 DOI: 10.3390/molecules29153515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 07/11/2024] [Accepted: 07/18/2024] [Indexed: 08/12/2024] Open
Abstract
The inhibitory-kappaB kinases (IKKs) IKKα and IKKβ play central roles in regulating the non-canonical and canonical NF-κB signalling pathways. Whilst the proteins that transduce the signals of each pathway have been extensively characterised, the clear dissection of the functional roles of IKKα-mediated non-canonical NF-κB signalling versus IKKβ-driven canonical signalling remains to be fully elucidated. Progress has relied upon complementary molecular and pharmacological tools; however, the lack of highly potent and selective IKKα inhibitors has limited advances. Herein, we report the development of an aminoindazole-pyrrolo[2,3-b]pyridine scaffold into a novel series of IKKα inhibitors. We demonstrate high potency and selectivity against IKKα over IKKβ in vitro and explain the structure-activity relationships using structure-based molecular modelling. We show selective target engagement with IKKα in the non-canonical NF-κB pathway for both U2OS osteosarcoma and PC-3M prostate cancer cells by employing isoform-related pharmacodynamic markers from both pathways. Two compounds (SU1261 [IKKα Ki = 10 nM; IKKβ Ki = 680 nM] and SU1349 [IKKα Ki = 16 nM; IKKβ Ki = 3352 nM]) represent the first selective and potent pharmacological tools that can be used to interrogate the different signalling functions of IKKα and IKKβ in cells. Our understanding of the regulatory role of IKKα in various inflammatory-based conditions will be advanced using these pharmacological agents.
Collapse
Affiliation(s)
- Christopher Riley
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Usama Ammar
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Aisha Alsfouk
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Nahoum G. Anthony
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Jessica Baiget
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Giacomo Berretta
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - David Breen
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Judith Huggan
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Christopher Lawson
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Kathryn McIntosh
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Robin Plevin
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Colin J. Suckling
- Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, UK
| | - Louise C. Young
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Andrew Paul
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| | - Simon P. Mackay
- Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow G4 0RE, UK
| |
Collapse
|
9
|
Castiñeiras A, García-Santos I. Palladium(II) and Platinum(II) Complexes Bearing ONS-Type Pincer Ligands: Synthesis, Characterization and Catalytic Investigations. Molecules 2024; 29:3425. [PMID: 39065003 PMCID: PMC11280083 DOI: 10.3390/molecules29143425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Revised: 07/19/2024] [Accepted: 07/20/2024] [Indexed: 07/28/2024] Open
Abstract
This work describes the synthesis of eight new Pd(II) and Pt(II) complexes with the general formula [M(TSC)Cl], where TSC represents the 4N-monosubstituted thiosemicarbazone derived from 2-acetylpyridine N-oxide with the substituents CH3 (H4MLO), C2H5 (H4ELO), phenyl (H4PLO) and (CH3)2 (H4DMLO). These complexes have been characterized by elemental analysis, molar conductivity, IR spectroscopy, 1H, 13C, 195Pt and ESI-MS. The complexes exhibit a square planar geometry around the metallic center coordinated by a thiosemicarbazone molecule acting as a donor ONS-type pincer ligand and by a chloride, as confirmed by the molecular structures of the complexes, [Pd(4ELO)Cl] (3) and [Pd(4PLO)Cl] (5), determined by single-crystal X-ray diffraction. The 195Pt NMR spectra of the complexes of formulae [Pt(4PLO)Cl] (6) and [Pt(4DMLO)Cl] (8) in DMSO show a single signal at -2420.4 ppm, confirming the absence of solvolysis products. Complexes 3 and 5 have been tested as catalysts in the Suzuki-Miyaura cross-coupling reactions of aryl bromides with phenylboronic acid, with yields of between 50 and 90.
Collapse
Affiliation(s)
- Alfonso Castiñeiras
- Department of Inorganic Chemistry, Faculty of Pharmacy, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain;
| | | |
Collapse
|
10
|
Tiessler-Sala L, Maréchal JD, Lledós A. Rationalization of a Streptavidin Based Enantioselective Artificial Suzukiase: An Integrative Computational Approach. Chemistry 2024; 30:e202401165. [PMID: 38752552 DOI: 10.1002/chem.202401165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Indexed: 06/06/2024]
Abstract
An Artificial Metalloenzyme (ArM) built employing the streptavidin-biotin technology has been used for the enantioselective synthesis of binaphthyls by means of asymmetric Suzuki-Miyaura cross-coupling reactions. Despite its success, it remains a challenge to understand how the length of the biotin cofactors or the introduction of mutations to streptavidin leads the preferential synthesis of one atropisomer over the other. In this study, we apply an integrated computational modeling approach, including DFT calculations, protein-ligand dockings and molecular dynamics to rationalize the impact of mutations and length of the biotion cofactor on the enantioselectivities of the biaryl product. The results unravel that the enantiomeric differences found experimentally can be rationalized by the disposition of the first intermediate, coming from the oxidative addition step, and the entrance of the second substrate. The work also showcases the difficulties facing to control the enantioselection when engineering ArM to catalyze enantioselective Suzuki-Miyaura couplings and how the combination of DFT calculations, molecular dockings and MD simulations can be used to rationalize artificial metalloenzymes.
Collapse
Affiliation(s)
- Laura Tiessler-Sala
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - Jean-Didier Maréchal
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - Agustí Lledós
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
| |
Collapse
|
11
|
Zhu Y, Yang S, Zhou T, Szostak M. [(NHC)Pd(OAc) 2]: Highly Active Carboxylate Pd(II)-NHC (NHC = N-Heterocyclic Carbene) Precatalysts for Suzuki-Miyaura and Buchwald-Hartwig Cross-Coupling of Amides by N-C(O) Activation. J Org Chem 2024. [PMID: 38950123 DOI: 10.1021/acs.joc.4c00103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
In the past eight years, the selective cross-coupling of amides by N-C(O) bond activation has emerged as a highly attractive manifold for the manipulation of traditionally unreactive amide bonds. In this Special Issue on Next-Generation Cross-Coupling Chemistry, we report the Suzuki-Miyaura and Buchwald-Hartwig cross-coupling of amides by selective N-C(O) cleavage catalyzed by bench-stable, well-defined carboxylate Pd(II)-NHC (NHC = N-heterocyclic carbene) catalysts {[(NHC)Pd(O2CR)2]}. This class of Pd(II)-NHCs promotes cross-coupling under exceedingly mild room-temperature conditions owing to the facile dissociation of the carboxylate ligands to form the active complex. These readily accessible Pd(II)-NHC precatalysts show excellent functional group tolerance and are compatible with a broad range of amide activating groups. Considering the mild conditions for the cross-coupling and the facile access to carboxylate Pd(II)-NHC complexes, we anticipate that this class of bench-stable complexes will find wide application in the activation of amide N-C(O) and related acyl X-C(O) bonds.
Collapse
Affiliation(s)
- Yawei Zhu
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Shiyi Yang
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Tongliang Zhou
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| |
Collapse
|
12
|
Shi Y, Derasp JS, Maschmeyer T, Hein JE. Phase transfer catalysts shift the pathway to transmetalation in biphasic Suzuki-Miyaura cross-couplings. Nat Commun 2024; 15:5436. [PMID: 38937470 PMCID: PMC11211432 DOI: 10.1038/s41467-024-49681-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 06/14/2024] [Indexed: 06/29/2024] Open
Abstract
The Suzuki-Miyaura coupling is a widely used C-C bond forming reaction. Numerous mechanistic studies have enabled the use of low catalyst loadings and broad functional group tolerance. However, the dominant mode of transmetalation remains controversial and likely depends on the conditions employed. Herein we detail a mechanistic study of the palladium-catalyzed Suzuki-Miyaura coupling under biphasic conditions. The use of phase transfer catalysts results in a remarkable 12-fold rate enhancement in the targeted system. A shift from an oxo-palladium based transmetalation to a boronate-based pathway lies at the root of this activity. Furthermore, a study of the impact of different water loadings reveals reducing the proportion of the aqueous phase increases the reaction rate, contrary to reaction conditions typically employed in the literature. The importance of these findings is highlighted by achieving an exceptionally broad substrate scope with benzylic electrophiles using a 10-fold reduction in catalyst loading relative to literature precedent.
Collapse
Affiliation(s)
- Yao Shi
- Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada
| | - Joshua S Derasp
- Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada.
| | - Tristan Maschmeyer
- Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada
| | - Jason E Hein
- Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada.
- Department of Chemistry, University of Bergen, Bergen, Norway.
- Acceleration Consortium, University of Toronto, Toronto, ON, Canada.
| |
Collapse
|
13
|
D'Amico F, Papucci C, Franchi D, Reginato G, Taddei M, Mordini A, Zani L, Dessì A, Calamante M. Pd-Catalyzed Miyaura Borylation and Telescopic Borylation/Suzuki-Miyaura Cross-Coupling Processes in Deep-Eutectic Solvents. J Org Chem 2024; 89:6991-7003. [PMID: 38716702 DOI: 10.1021/acs.joc.4c00357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
We report an efficient procedure to carry out palladium-catalyzed Miyaura borylation reactions of (hetero)aromatic halides and triflates in choline chloride (ChCl)-based deep eutectic solvents (DESs). The procedure employs bis(pinacolato)diboron as a boron source and a catalyst prepared in situ from readily available Pd2(dba)3 and the phosphine ligand XPhos. Reactions proceed well in different ChCl-based DESs, among which the best results were provided by environmentally friendly and biodegradable mixtures with glycerol and glucose. The reaction tolerates both EDG and EWG substituents on the substrates and can be run on different halides (chloride, bromide, iodide) and pseudohalides (triflate). Furthermore, for several substrates, the catalyst loading can be reduced to 1 mol % Pd (0.5% mol Pd2(dba)3) without compromising the reaction yield. Moreover, we show that the Miyaura borylation protocol in DES can be combined with a subsequent Suzuki-Miyaura cross-coupling reaction in a one-pot procedure, allowing access to various biaryl products and demonstrating its synthetic utility by preparing the precursors of two compounds with reported applications in the photovoltaics sector. Finally, two green metrics (E-factor and EcoScale) of the new one-pot procedure in DES were calculated and compared with literature values to assess the potential advantages in terms of waste reduction, safety, and energy consumption.
Collapse
Affiliation(s)
- Francesco D'Amico
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
- Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy
| | - Costanza Papucci
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
- Department of Chemistry "U. Schiff", University of Florence, 50019 Sesto Fiorentino, Italy
| | - Daniele Franchi
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
| | - Gianna Reginato
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
| | - Maurizio Taddei
- Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy
| | - Alessandro Mordini
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
- Department of Chemistry "U. Schiff", University of Florence, 50019 Sesto Fiorentino, Italy
| | - Lorenzo Zani
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
| | - Alessio Dessì
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
| | - Massimo Calamante
- Institute of Chemistry of Organometallic Compounds (CNR-ICCOM), 50019 Sesto Fiorentino, Italy
- Department of Chemistry "U. Schiff", University of Florence, 50019 Sesto Fiorentino, Italy
| |
Collapse
|
14
|
Guevara UJ, Núñez J, Pérez LM, Tiutiunnyk A, Urdaneta N, Cisternas E, Laroze D. Optoelectronic Response to the Fluor Ion Bond on 4-(4,4,5,5-Tetramethyl-1,3,2-dioxoborolan-2-yl)benzaldehyde. Int J Mol Sci 2024; 25:5000. [PMID: 38732218 PMCID: PMC11084352 DOI: 10.3390/ijms25095000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 04/08/2024] [Accepted: 04/11/2024] [Indexed: 05/13/2024] Open
Abstract
Boronate esters are a class of compounds containing a boron atom bonded to two oxygen atoms in an ester group, often being used as precursors in the synthesis of other materials. The characterization of the structure and properties of esters is usually carried out by UV-visible, infrared, and nuclear magnetic resonance (NMR) spectroscopic techniques. With the aim to better understand our experimental data, in this article, the density functional theory (DFT) is used to analyze the UV-visible and infrared spectra, as well as the isotropic shielding and chemical shifts of the hydrogen atoms 1H, carbon 13C and boron 11B in the compound 4-(4,4,5,5-tetramethyl-1,3,2-dioxoborolan-2-yl)benzaldehyde. Furthermore, this study considers the change in its electronic and spectroscopic properties of this particular ester, when its boron atom is coordinated with a fluoride anion. The calculations were carried out using the LSDA and B3LYP functionals in Gaussian-16, and PBE in CASTEP. The results show that the B3LYP functional gives the best approximation to the experimental data. The formation of a coordinated covalent B-F bond highlights the remarkable sensitivity of the NMR chemical shifts of carbon, oxygen, and boron atoms and their surroundings. Furthermore, this bond also highlights the changes in the electron transitions bands n → π* and π → π* during the absorption and emission of a photon in the UV-vis, and in the stretching bands of the C=C bonds, and bending of BO2 in the infrared spectrum. This study not only contributes to the understanding of the properties of boronate esters but also provides important information on the interactions and responses optoelectronic of the compound when is bonded to a fluorine atom.
Collapse
Affiliation(s)
- Ulises J. Guevara
- Instituto de Alta Investigación, Universidad de Tarapacá, Arica 1000000, Chile; (U.J.G.)
| | - Jesús Núñez
- Departamento de Biología, Universidad Politécnica Territorial del Oeste de Sucre “Clodosbaldo Russian”, Cumaná 6101, Venezuela
| | - Laura M. Pérez
- Departamento de Ingeniería Industrial y de Sistemas, Universidad de Tarapacá, Arica 1000000, Chile
| | - Anton Tiutiunnyk
- Departamento de Física, FACI, Universidad de Tarapacá, Arica 1000000, Chile
| | - Neudo Urdaneta
- Departamento de Química, Universidad Simón Bolívar (USB), Caracas 1020-A, Venezuela
| | - Eduardo Cisternas
- Departamento de Ciencias Físicas, Universidad de La Frontera, Casilla 54-D, Temuco 4811230, Chile;
| | - David Laroze
- Instituto de Alta Investigación, Universidad de Tarapacá, Arica 1000000, Chile; (U.J.G.)
| |
Collapse
|
15
|
Nikulshin PV, Makarov AY, Koskin IP, Becker CS, Kazantsev MS, Beckmann J, Balmohammadi Y, Grabowsky S, Mebs S, Naumova OV, Protasov DY, Svit KA, Irtegova IG, Radiush EA, Bagryanskaya IY, Shundrin LA, Zibarev AV. 1,2,3,4-Tetrafluorobiphenylene: A Prototype Janus-Headed Scaffold for Ambipolar Materials. Chempluschem 2024; 89:e202300692. [PMID: 38052725 DOI: 10.1002/cplu.202300692] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Revised: 12/01/2023] [Accepted: 12/05/2023] [Indexed: 12/07/2023]
Abstract
The title compound was synthesized by Ullmann cross-coupling in low yield as the first representative of [n]phenylene containing hydrocarbon and fluorocarbon rings. Stille/Suzuki-Miyaura cross-coupling reactions, as well as substitution of fluorine in suitable starting compounds, failed to give the same product. The geometric and electronic structures of the title compound were studied by X-ray diffraction, cyclic voltammetry and density functional theory calculations, together with Hirshfeld surface and reduced density gradient analyses. The crystal structure features head-to-tail π-stacking and other fluorine-related secondary bonding interactions. From the nucleus-independent chemical shifts descriptor, the four-membered ring of the title compound is antiaromatic, and the six-membered rings are aromatic. The Janus molecule is highly polarized; and the six-membered fluoro- and hydrocarbon rings are Lewis π-acidic and π-basic, respectively. The electrochemically-generated radical cation of the title compound is long-lived as characterized by electron paramagnetic resonance, whereas the radical anion is unstable in solution. The title compound reveals electrical properties of an insulator. On expanding its molecular scaffold towards partially fluorinated [n]phenylenes (n≥2), the properties presumably can be transformed into those of semiconductors. In this context, the title compound is suggested as a prototype scaffold for ambipolar materials for organic electronics and spintronics.
Collapse
Affiliation(s)
- Pavel V Nikulshin
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
- Current address: Topchiev Institute of Petrochemical Synthesis, Russian Academy of Sciences, 119991, Moscow, Russia
| | - Alexander Yu Makarov
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Igor P Koskin
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Christina S Becker
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Maxim S Kazantsev
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Jens Beckmann
- Institute for Inorganic Chemistry and Crystallography, University of Bremen, 28359, Bremen, Germany
| | - Yaser Balmohammadi
- Department of Chemistry, Biochemistry and Pharmaceutical Science, University of Bern, 3012, Bern, Switzerland
| | - Simon Grabowsky
- Department of Chemistry, Biochemistry and Pharmaceutical Science, University of Bern, 3012, Bern, Switzerland
| | - Stefan Mebs
- Institute for Experimental Physics, Free University of Berlin, 14195, Berlin, Germany
| | - Olga V Naumova
- Rzhanov Institute of Semiconductor Physics, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Dmitry Yu Protasov
- Rzhanov Institute of Semiconductor Physics, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Kirill A Svit
- Rzhanov Institute of Semiconductor Physics, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Irina G Irtegova
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Ekaterina A Radiush
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Irina Yu Bagryanskaya
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Leonid A Shundrin
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| | - Andrey V Zibarev
- Vorozhtsov Novosibirsk Institute of Organic Chemistry, Siberian Branch of the Russian Academy of Sciences, 630090, Novosibirsk, Russia
| |
Collapse
|
16
|
Ban K, Nozaki S, Aijima T, Oyama S, Tsujino H, Kanematsu Y, Akai S, Sawama Y. Furanyl bis(indolyl)methane as a palladium ion-selective chromogenic agent. Org Biomol Chem 2024; 22:2734-2738. [PMID: 38356415 DOI: 10.1039/d4ob00046c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2024]
Abstract
The colorless solution of furan-2-yl bis(indolyl)methane (BIM) is newly revealed to work as a palladium (Pd2+) ion-selective chromogenic agent by turning orange. 5-(N-Methyl-N-phenyl-aminomethyl)-furan-2-yl BIM could be synthesized from 5-chloromethylfurfural as a biorenewable feedstock via one-pot and double functionalization, and a mixture of its solution and Pd2+ ions showed the highest absorbance at 465 nm in UV-Vis analysis. On the other hand, other metal ions (Cu2+, Cr2+, Cr3+, Fe2+, Fe3+, Ni2+, Zn2+, In2+, Pt2+, or Ce3+) exhibited no response.
Collapse
Affiliation(s)
- Kazuho Ban
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| | - Shiho Nozaki
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| | - Takaaki Aijima
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| | - Shuki Oyama
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| | - Hirofumi Tsujino
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| | - Yusuke Kanematsu
- Graduate School of Advanced Science and Engineering, Hiroshima University, 1-4-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8527, Japan
| | - Shuji Akai
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| | - Yoshinari Sawama
- Graduate School of Pharmaceutical Sciences, Osaka University, 1-6, Yamada-oka, Suita, Osaka 565-0871, Japan.
| |
Collapse
|
17
|
Chantrain V, Rensch T, Pickhardt W, Grätz S, Borchardt L. Continuous Direct Mechanocatalytic Suzuki-Miyaura Coupling via Twin-Screw Extrusion. Chemistry 2024; 30:e202304060. [PMID: 38206188 DOI: 10.1002/chem.202304060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 01/11/2024] [Accepted: 01/11/2024] [Indexed: 01/12/2024]
Abstract
This work establishes the first direct mechanocatalytic reaction protocol within an extruder, focusing on the Suzuki-Miyaura reaction. Through the coating of either the extruder screws or barrel with Pd, we executed the cross-coupling reaction without the reliance on molecular catalyst compounds or powders, and solvents continuously. We identified the influence and interplay of crucial reaction parameters such as temperature, mechanical energy input, residence time, rheology, and catalyst contact time and finally obtained 36 % and 75 % of the reaction product after one and four reactor passes respectively.
Collapse
Affiliation(s)
- Viviene Chantrain
- Inorganic Chemistry I, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Tilo Rensch
- Inorganic Chemistry I, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Wilm Pickhardt
- Inorganic Chemistry I, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Sven Grätz
- Inorganic Chemistry I, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Lars Borchardt
- Inorganic Chemistry I, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| |
Collapse
|
18
|
Xie X, Zhang J, Song XQ, Li W, Cao F, Zhou C, Zhu H, Li L. Unveiling Pre-Transmetalation Intermediates in Base-Free Suzuki-Miyaura Cross-Couplings: A Computational Study. Inorg Chem 2024; 63:2606-2615. [PMID: 38267390 DOI: 10.1021/acs.inorgchem.3c03855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
The pre-transmetalation intermediates are critically important in Suzuki-Miyaura cross-coupling (SMC) reactions and have become a hot spot of the current research. However, the pre-transmetalation intermediates under base-free conditions have not been clear. Herein, a comprehensive theoretical study is performed on the base-free Pd-catalyzed desulfonative SMC reaction. The fragile coordination feature and the acceleration role of the RuPhos chelate ligand are revealed. The hydrogen-bond complex between the Pd-F complex and aryl boronic acid is identified as an important pre-transmetalation intermediate, which increases the energy span to 32.5 kcal/mol. The controlling factor for the formation of the hydrogen-bond complexes is attributed to the electronegativities of halogen atoms in the metal halide complexes. What is more, other reported SMC reaction systems involving metal halide complexes and aryl boronic acids are reconsidered and suggest that the hydrogen-bond complexes widely exist as stable pre-transmetalation intermediates with influencing the catalytic activities. The earth-abundant Ni-catalyzed desulfonative SMC reaction is further designed and predicted to have a higher activity than the original Pd-catalyzed SMC reaction.
Collapse
Affiliation(s)
- Xiaofeng Xie
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Jiejing Zhang
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Xue-Qing Song
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Wan Li
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Fei Cao
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Chengyan Zhou
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Huajie Zhu
- School of Chemical and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei 050018, P. R. China
| | - Longfei Li
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| |
Collapse
|
19
|
Escayola S, Bahri-Laleh N, Poater A. % VBur index and steric maps: from predictive catalysis to machine learning. Chem Soc Rev 2024; 53:853-882. [PMID: 38113051 DOI: 10.1039/d3cs00725a] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
Steric indices are parameters used in chemistry to describe the spatial arrangement of atoms or groups of atoms in molecules. They are important in determining the reactivity, stability, and physical properties of chemical compounds. One commonly used steric index is the steric hindrance, which refers to the obstruction or hindrance of movement in a molecule caused by bulky substituents or functional groups. Steric hindrance can affect the reactivity of a molecule by altering the accessibility of its reactive sites and influencing the geometry of its transition states. Notably, the Tolman cone angle and %VBur are prominent among these indices. Actually, steric effects can also be described using the concept of steric bulk, which refers to the space occupied by a molecule or functional group. Steric bulk can affect the solubility, melting point, boiling point, and viscosity of a substance. Even though electronic indices are more widely used, they have certain drawbacks that might shift preferences towards others. They present a higher computational cost, and often, the weight of electronics in correlation with chemical properties, e.g. binding energies, falls short in comparison to %VBur. However, it is worth noting that this may be because the steric index inherently captures part of the electronic content. Overall, steric indices play an important role in understanding the behaviour of chemical compounds and can be used to predict their reactivity, stability, and physical properties. Predictive chemistry is an approach to chemical research that uses computational methods to anticipate the properties and behaviour of these compounds and reactions, facilitating the design of new compounds and reactivities. Within this domain, predictive catalysis specifically targets the prediction of the performance and behaviour of catalysts. Ultimately, the goal is to identify new catalysts with optimal properties, leading to chemical processes that are both more efficient and sustainable. In this framework, %VBur can be a key metric for deepening our understanding of catalysis, emphasizing predictive catalysis and sustainability. Those latter concepts are needed to direct our efforts toward identifying the optimal catalyst for any reaction, minimizing waste, and reducing experimental efforts while maximizing the efficacy of the computational methods.
Collapse
Affiliation(s)
- Sílvia Escayola
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Mª Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain.
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain
| | - Naeimeh Bahri-Laleh
- Iran Polymer and Petrochemical Institute (IPPI), P.O. Box 14965/115, Tehran, Iran
- Institute for Sustainability with Knotted Chiral Meta Matter (WPI-SKCM), Hiroshima University, Hiroshima, 739-8526, Japan
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Mª Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain.
| |
Collapse
|
20
|
Zhang Q, Kuang G, Wang L, Duan P, Sun W, Ye F. Designing Bioorthogonal Reactions for Biomedical Applications. RESEARCH (WASHINGTON, D.C.) 2023; 6:0251. [PMID: 38107023 PMCID: PMC10723801 DOI: 10.34133/research.0251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 09/25/2023] [Indexed: 12/19/2023]
Abstract
Bioorthogonal reactions are a class of chemical reactions that can be carried out in living organisms without interfering with other reactions, possessing high yield, high selectivity, and high efficiency. Since the first proposal of the conception by Professor Carolyn Bertozzi in 2003, bioorthogonal chemistry has attracted great attention and has been quickly developed. As an important chemical biology tool, bioorthogonal reactions have been applied broadly in biomedicine, including bio-labeling, nucleic acid functionalization, drug discovery, drug activation, synthesis of antibody-drug conjugates, and proteolysis-targeting chimeras. Given this, we summarized the basic knowledge, development history, research status, and prospects of bioorthogonal reactions and their biomedical applications. The main purpose of this paper is to furnish an overview of the intriguing bioorthogonal reactions in a variety of biomedical applications and to provide guidance for the design of novel reactions to enrich bioorthogonal chemistry toolkits.
Collapse
Affiliation(s)
- Qingfei Zhang
- Wenzhou Institute,
University of Chinese Academy of Sciences, Wenzhou 325001, China
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics,
Chinese Academy of Sciences, Beijing 100190, China
| | - Gaizhen Kuang
- Wenzhou Institute,
University of Chinese Academy of Sciences, Wenzhou 325001, China
| | - Li Wang
- Wenzhou Institute,
University of Chinese Academy of Sciences, Wenzhou 325001, China
| | - Ping Duan
- Department of Obstetrics and Gynecology, The Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical University, Wenzhou, Zhejiang 325027, China
| | - Weijian Sun
- Wenzhou Institute,
University of Chinese Academy of Sciences, Wenzhou 325001, China
- Department of Gastrointestinal Surgery, The Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical University, Wenzhou, 325027, China
| | - Fangfu Ye
- Wenzhou Institute,
University of Chinese Academy of Sciences, Wenzhou 325001, China
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics,
Chinese Academy of Sciences, Beijing 100190, China
| |
Collapse
|
21
|
Reusser E, Albrecht M. Electronically flexible PYA ligands for efficient palladium-catalyzed α-arylation of ketones. Dalton Trans 2023; 52:16688-16697. [PMID: 37882141 PMCID: PMC10660196 DOI: 10.1039/d3dt03182a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 10/17/2023] [Indexed: 10/27/2023]
Abstract
Palladium-catalyzed cross-coupling chemistry and in particular ketone α-arylation has been relying on a rather narrow range of supporting ligands with almost no alternatives to phosphines and N-heterocyclic carbenes. Here we introduce a class of well-defined palladium(II) complexes supported by N,N'-chelating and electronically flexible pyridylidene amide (PYA)-pyridyl ligands as catalysts for efficient α-arylation of ketones. Steric and electronic variations of the N,N'-bidentate ligand indicate that the introduction of an ortho-methyl group on the pyridinum heterocycle of the PYA ligand enhances the arylation rate and prevents catalyst deactivation, reaching turnover numbers up to 7300 and turnover frequencies of almost 10 000 h-1, which is similar to that of the best phosphine complexes known to date. Introducing a shielding xylyl substituent accelerates catalysis further, however at the expense of lower selectivity towards arylated ketones. Substrate scope investigations revealed that both electron-rich and -poor aryl bromides as well as a broad range of electronically and sterically modified ketones are efficiently converted, including aliphatic ketones. Mechanistic investigations using Hammett and Eyring analyses indicated that both, oxidative addition and reductive elimination are relatively fast, presumably as a consequence of the electronic flexibility of the PYA ligand, while enolate coordination was identified as the turnover-limiting step.
Collapse
Affiliation(s)
- Esaïe Reusser
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland.
| | - Martin Albrecht
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland.
| |
Collapse
|
22
|
Du L, Wilson BAP, Li N, Shah R, Dalilian M, Wang D, Smith EA, Wamiru A, Goncharova EI, Zhang P, O’Keefe BR. Discovery and Synthesis of a Naturally Derived Protein Kinase Inhibitor that Selectively Inhibits Distinct Classes of Serine/Threonine Kinases. JOURNAL OF NATURAL PRODUCTS 2023; 86:2283-2293. [PMID: 37843072 PMCID: PMC10616853 DOI: 10.1021/acs.jnatprod.3c00394] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Indexed: 10/17/2023]
Abstract
The DNAJB1-PRKACA oncogenic gene fusion results in an active kinase enzyme, J-PKAcα, that has been identified as an attractive antitumor target for fibrolamellar hepatocellular carcinoma (FLHCC). A high-throughput assay was used to identify inhibitors of J-PKAcα catalytic activity by screening the NCI Program for Natural Product Discovery (NPNPD) prefractionated natural product library. Purification of the active agent from a single fraction of an Aplidium sp. marine tunicate led to the discovery of two unprecedented alkaloids, aplithianines A (1) and B (2). Aplithianine A (1) showed potent inhibition against J-PKAcα with an IC50 of ∼1 μM in the primary screening assay. In kinome screening, 1 inhibited wild-type PKA with an IC50 of 84 nM. Further mechanistic studies including cocrystallization and X-ray diffraction experiments revealed that 1 inhibited PKAcα catalytic activity by competitively binding to the ATP pocket. Human kinome profiling of 1 against a panel of 370 kinases revealed potent inhibition of select serine/threonine kinases in the CLK and PKG families with IC50 values in the range ∼11-90 nM. An efficient, four-step total synthesis of 1 has been accomplished, enabling further evaluation of aplithianines as biologically relevant kinase inhibitors.
Collapse
Affiliation(s)
- Lin Du
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
| | - Brice A. P. Wilson
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
| | - Ning Li
- Center
for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
| | - Rohan Shah
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
| | - Masoumeh Dalilian
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
- Leidos
Biomedical Research, Frederick National
Laboratory for Cancer Research, Frederick, Maryland 21702, United States
| | - Dongdong Wang
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
| | - Emily A. Smith
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
- Leidos
Biomedical Research, Frederick National
Laboratory for Cancer Research, Frederick, Maryland 21702, United States
| | - Antony Wamiru
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
- Leidos
Biomedical Research, Frederick National
Laboratory for Cancer Research, Frederick, Maryland 21702, United States
| | - Ekaterina I. Goncharova
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
- Leidos
Biomedical Research, Frederick National
Laboratory for Cancer Research, Frederick, Maryland 21702, United States
| | - Ping Zhang
- Center
for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
| | - Barry R. O’Keefe
- Molecular
Targets Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States
- Natural
Products Branch, Development Therapeutics Program, Division of Cancer
Treatment and Diagnosis, National Cancer
Institute, Frederick, Maryland 21702, United States
| |
Collapse
|
23
|
Malyk K, Pillai VG, Brennessel WW, Leon Baxin R, Silk ES, Nakamura DT, Kennedy CR. Distinguishing Competing Mechanistic Manifolds for C(acyl)-N Functionalization by a Ni/ N-Heterocyclic Carbene Catalyst System. JACS AU 2023; 3:2451-2457. [PMID: 37772178 PMCID: PMC10523494 DOI: 10.1021/jacsau.3c00283] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 07/31/2023] [Accepted: 08/16/2023] [Indexed: 09/30/2023]
Abstract
Carboxylic acid derivatives are appealing alternatives to organohalides as cross-coupling electrophiles for fine chemical synthesis due to their prevalence in biomass and bioactive small molecules as well as their ease of preparation and handling. Within this family, carboxamides comprise a versatile electrophile class for nickel-catalyzed coupling with carbon and heteroatom nucleophiles. However, even state-of-the-art C(acyl)-N functionalization and cross-coupling reactions typically require high catalyst loadings and specific substitution patterns. These challenges have proven difficult to overcome, in large part due to limited experimental mechanistic insight. In this work, we describe a detailed mechanistic case study of acylative coupling reactions catalyzed by the commonly employed Ni/SIPr catalyst system (SIPr = 1,3-bis(2,6-di-isopropylphenyl)-4,5-dihydroimidazol-2-ylidine). Stoichiometric organometallic studies, in situ spectroscopic measurements, and crossover experiments demonstrate the accessibility of Ni(0), Ni(I), and Ni(II) resting states. Although in situ precatalyst activation limits reaction efficiency, the low concentrations of active, SIPr-supported Ni(0) select for electrophile-first (closed-shell) over competing nucleophile-first (open-shell) mechanistic manifolds. We anticipate that the experimental insights into the nature and controlling features of these distinct pathways will accelerate rational improvements to cross-coupling methodologies involving pervasive carboxamide substrate motifs.
Collapse
Affiliation(s)
| | | | - William W. Brennessel
- University of Rochester, Department of Chemistry, Rochester, New York 14627, United States
| | - Roberto Leon Baxin
- University of Rochester, Department of Chemistry, Rochester, New York 14627, United States
| | - Elliot S. Silk
- University of Rochester, Department of Chemistry, Rochester, New York 14627, United States
| | - Daniel T. Nakamura
- University of Rochester, Department of Chemistry, Rochester, New York 14627, United States
| | - C. Rose Kennedy
- University of Rochester, Department of Chemistry, Rochester, New York 14627, United States
| |
Collapse
|
24
|
Yang S, Yu X, Liu Y, Tomasini M, Caporaso L, Poater A, Cavallo L, Cazin CSJ, Nolan SP, Szostak M. Suzuki-Miyaura Cross-Coupling of Amides by N-C Cleavage Mediated by Air-Stable, Well-Defined [Pd(NHC)(sulfide)Cl2] Catalysts: Reaction Development, Scope, and Mechanism. J Org Chem 2023. [PMID: 37467445 DOI: 10.1021/acs.joc.3c00912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2023]
Abstract
The Suzuki-Miyaura cross-coupling of amides by selective N-C acyl bond cleavage represents a powerful tool for constructing biaryl ketones from historically inert amide bonds. These amide bond activation reactions hinge upon efficient oxidative addition of the N-C acyl bond to Pd(0). However, in contrast to the well-researched activation of aryl halides by C(sp2)-X oxidative addition, very few studies on the mechanism of C(acyl)-N bond oxidative addition and catalyst effect have been reported. Herein, we report a study on [Pd(NHC)(sulfide)Cl2] catalysts in amide N-C bond activation. These readily prepared, well-defined, air- and moisture-stable Pd(II)-NHC catalysts feature SMe2 (DMS = dimethylsulfide) or S(CH2CH2)2 (THT = tetrahydrothiophene) as ancillary ligands. The reaction development, kinetic studies, and reaction scope are presented. Extensive DFT studies were conducted to gain insight into the mechanism of C(acyl)-N bond oxidative addition and catalyst activation. We expect that [Pd(NHC)(sulfide)Cl2] precatalysts featuring sulfides as well-defined, readily accessible ancillary ligands will find application in C(acyl)-X bond activation in organic synthesis and catalysis.
Collapse
Affiliation(s)
- Shiyi Yang
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Xiang Yu
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Yaxu Liu
- Department of Chemistry and Center for Sustainable Chemistry, Ghent University, Krijgslaan 281, S-3, B-9000 Ghent, Belgium
| | - Michele Tomasini
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Maria Aurèlia Capmany 69, Campus Montilivi, Girona, Catalonia 17003, Spain
- Department of Chemistry, University of Salerno, Via Ponte don Melillo, Fisciano, 84084 SA, Italy
| | - Lucia Caporaso
- Department of Chemistry, University of Salerno, Via Ponte don Melillo, Fisciano, 84084 SA, Italy
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Maria Aurèlia Capmany 69, Campus Montilivi, Girona, Catalonia 17003, Spain
| | - Luigi Cavallo
- Department of Chemistry, University of Salerno, Via Ponte don Melillo, Fisciano, 84084 SA, Italy
- KAUST Catalysis Center (KCC), King Abdullah University of Science & Technology, 23955-6900 Thuwal, Saudi Arabia
| | - Catherine S J Cazin
- Department of Chemistry and Center for Sustainable Chemistry, Ghent University, Krijgslaan 281, S-3, B-9000 Ghent, Belgium
| | - Steven P Nolan
- Department of Chemistry and Center for Sustainable Chemistry, Ghent University, Krijgslaan 281, S-3, B-9000 Ghent, Belgium
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| |
Collapse
|
25
|
Keskin E, Arslan H. Palladium complexes containing NNN pincer type ligands and their activities in Suzuki-Miyaura cross coupling reaction. Heliyon 2023; 9:e17608. [PMID: 37519671 PMCID: PMC10372205 DOI: 10.1016/j.heliyon.2023.e17608] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 06/22/2023] [Accepted: 06/22/2023] [Indexed: 08/01/2023] Open
Abstract
Five new NNN pincer-type ligands and their palladium complexes were successfully synthesised and characterised by FT-IR, 1H NMR, 13C NMR, and UV-vis analyses. TEM analysis was used to observe the morphological character of the black residues obtained from the fourth cycle of the reusability test. Furthermore, suitable crystals of the N2,N6-bis(2-tert-butylphenyl)pyridine-2,6-dicarboxamide and its palladium complex were elucidated with the X-ray single crystal diffraction method. Both the ligand and its palladium complex crystallise in a monoclinic system with space group P21/c for the H2L4 and C2/c for the palladium complex. The structure of the pincer ligand and its palladium complex were stabilised by intramolecular and intermolecular C-H⋅⋅⋅O, C-H⋅⋅⋅N, and N-H⋅⋅⋅N contacts. A Suzuki-Miyaura cross-coupling reaction between aryl halides and phenylboronic acid was used to assess the catalytic abilities of the palladium pincer complexes. All of the prepared complexes exhibited considerable catalytic activity. However, complexes 4 (Acetonitrile-N2,N6-bis(2-tert-butylphenyl)pyridine-2,6-dicarboxamidopalladium(II)) and 5 (Acetonitrile-N2,N6-bis(2-nitrophenyl)pyridine-2,6-dicarboxamidopalladium(II)) provided almost 100% conversion with nearly 100% yield in the reaction between 4-bromotoluene and phenylboronic acid. Furthermore, these active complexes catalysed the reaction of the sterically hindered and deactivated substrates (1-Bromo-4-izobutylbenzene and 2-bromo-6-methoxynaphthalene) with phenylboronic acid, and complete conversion and yields up to 100% were achieved in a short time with the 2-bromo-6-methoxynaphthalene.
Collapse
|
26
|
Sonsona IG, Carrera M, Más-Montoya M, Sánchez RS, Serafini P, Barea EM, Mora-Seró I, Curiel D. 2D-Self-Assembled Organic Materials in Undoped Hole Transport Bilayers for Efficient Inverted Perovskite Solar Cells. ACS APPLIED MATERIALS & INTERFACES 2023; 15:22310-22319. [PMID: 37099614 PMCID: PMC10176319 DOI: 10.1021/acsami.2c23010] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Interfaces between photoactive perovskite layer and selective contacts play a key role in the performance of perovskite solar cells (PSCs). The properties of the interface can be modified by the introduction of molecular interlayers between the halide perovskite and the transporting layers. Herein, two novel structurally related molecules, 1,3,5-tris(α-carbolin-6-yl)benzene (TACB) and the hexamethylated derivative of truxenotris(7-azaindole) (TTAI), are reported. Both molecules have the ability to self-assemble through reciprocal hydrogen bond interactions, but they have different degrees of conformational freedom. The benefits of combining these tripodal 2D-self-assembled small molecular materials with well-known hole transporting layers (HTLs), such as PEDOT:PSS and PTAA, in PSCs with inverted configuration are described. The use of these molecules, particularly the more rigid TTAI, enhanced the charge extraction efficiency and reduced the charge recombination. Consequently, an improved photovoltaic performance was achieved in comparison to the devices fabricated with the standard HTLs.
Collapse
Affiliation(s)
- Isaac G Sonsona
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, 30100 Murcia, Spain
| | - Manuel Carrera
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, 30100 Murcia, Spain
| | - Miriam Más-Montoya
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, 30100 Murcia, Spain
| | - Rafael S Sánchez
- Institute of Advanced Materials, University Jaume I, Avenida de Vicent Sos Baynat, s/n, 12071 Castelló de la Plana, Spain
| | - Patricio Serafini
- Institute of Advanced Materials, University Jaume I, Avenida de Vicent Sos Baynat, s/n, 12071 Castelló de la Plana, Spain
| | - Eva M Barea
- Institute of Advanced Materials, University Jaume I, Avenida de Vicent Sos Baynat, s/n, 12071 Castelló de la Plana, Spain
| | - Iván Mora-Seró
- Institute of Advanced Materials, University Jaume I, Avenida de Vicent Sos Baynat, s/n, 12071 Castelló de la Plana, Spain
| | - David Curiel
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, 30100 Murcia, Spain
| |
Collapse
|
27
|
Molyneux S, Goss RJM. Fully Aqueous and Air-Compatible Cross-Coupling of Primary Alkyl Halides with Aryl Boronic Species: A Possible and Facile Method. ACS Catal 2023; 13:6365-6374. [PMID: 37180963 PMCID: PMC10167655 DOI: 10.1021/acscatal.3c00252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 04/04/2023] [Indexed: 05/16/2023]
Abstract
Aqueous transformations confer many advantages, including decreased environmental impact and increased opportunity for biomolecule modulation. Although several studies have been conducted to enable the cross-coupling of aryl halides in aqueous conditions, until now a process for the cross-coupling of primary alkyl halides in aqueous conditions was missing from the catalytic toolbox and considered impossible. Alkyl halide coupling in water suffers from severe problems. The reasons for this include the strong propensity for β-hydride elimination, the need for highly air- and water-sensitive catalysts and reagents, and the intolerance of many hydrophilic groups to cross-coupling conditions. Here, we report a broadly applicable and readily accessible process for the cross-coupling of water-soluble alkyl halides in water and air by using simple and commercially available bench-stable reagents. The trisulfonated aryl phosphine TXPTS in combination with a water-soluble palladium salt Na2PdCl4 allowed for the Suzuki-Miyaura coupling of water-soluble alkyl halides with aryl boronic acids, boronic esters, and borofluorate salts in mild, fully aqueous conditions. Multiple challenging functionalities, including unprotected amino acids, an unnatural halogenated amino acid within a peptide, and herbicides can be diversified in water. Structurally complex natural products were used as testbeds to showcase the late-stage tagging methodology of marine natural products to enable liquid chromatography-mass spectrometry (LC-MS) detection. This enabling methodology therefore provides a general method for the environmentally friendly and biocompatible derivatization of sp3 alkyl halide bonds.
Collapse
Affiliation(s)
- Samuel Molyneux
- School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, U.K.
| | - Rebecca J. M. Goss
- School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, U.K.
| |
Collapse
|
28
|
Guevara UJ, R. JBN, Lozada-Yavina R, Tiutiunnyk A, Pérez LM, Díaz P, Urdaneta N, Laroze D. Characterization of the 1-(5-(4,5-Dimethyl-1,3,2-dioxoborolan-2-yl)thiophen-2-yl)ethanone Using NMR 13C, 1H and 11B through the Density Functional Theory. MATERIALS (BASEL, SWITZERLAND) 2023; 16:3037. [PMID: 37109875 PMCID: PMC10140964 DOI: 10.3390/ma16083037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 02/21/2023] [Accepted: 02/23/2023] [Indexed: 06/19/2023]
Abstract
The use of computational methods that allow us to perform characterization on new compounds is not a novelty; nevertheless, the degree of complexity of the structures makes their study more challenging since new techniques and methods are required to adjust to the new structural model. The case of nuclear magnetic resonance characterization of boronate esters is fascinating because of its widespread use in materials science. In this paper, we use density functional theory to characterize the structure of the compound 1-[5-(4,5-Dimethyl-1,3,2-dioxaborolan-2-yl)thiophen-2-yl]ethanonea by means of nuclear magnetic resonance. We studied the compound in its solid form with the PBE-GGA and PBEsol-GGA functionals, with a set of plane wave functions and an augmented wave projector, which included gauge in CASTEP and its molecular structure with the B3LYP functional using the package Gaussian 09. In addition, we performed the optimization and calculation of the chemical shifts and isotropic nuclear magnetic resonance shielding of 1H, 13C, and 11B. Finally, we analyzed and compared the theoretical results with experimental diffractometric data observing a good approximation.
Collapse
Affiliation(s)
- Ulises J. Guevara
- Instituto de Alta Investigación, Universidad de Tarapacá, Arica 1000000, Chile
| | - Jesús B. Núñez R.
- Departamento de Biología, Universidad Politécnica Territorial del Oeste de Sucre “Clodosbaldo Russian”, Cumaná 6101, Venezuela
| | - Rafael Lozada-Yavina
- Facultad de Ciencias Básicas, Universidad Católica del Maule, Talca 3480112, Chile
- Facultad de Ciencias e Ingeniería, Universidad Tecnológica del Perú, Lima 15046, Peru
| | - Anton Tiutiunnyk
- Departamento de Física, FACI, Universidad de Tarapacá, Arica 1000000, Chile
| | - Laura M. Pérez
- Departamento de Física, FACI, Universidad de Tarapacá, Arica 1000000, Chile
| | - Pablo Díaz
- Departamento de Ciencias Físicas, Universidad de La Frontera, Casilla 54-D, Temuco 4780000, Chile
| | - Neudo Urdaneta
- Departamento de Química, Universidad Simón Bolívar (USB), Caracas 1020, Venezuela
| | - David Laroze
- Instituto de Alta Investigación, Universidad de Tarapacá, Arica 1000000, Chile
| |
Collapse
|
29
|
Arai N, Shibuya Y, Koguchi S, Yamamoto T. Halogen‐Substituted Mesoionic‐Carbene/Palladium Complexes for Catalytic Arylation of Aldehydes. ASIAN J ORG CHEM 2023. [DOI: 10.1002/ajoc.202300076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
Affiliation(s)
- Naoki Arai
- Department of Materials Science and Engineering Graduate School of Engineering Tokyo Denki University 5 Senju-Asahi-cho, Adachi-ku Tokyo 120-8551 Japan
| | - Yuga Shibuya
- Graduate School of Science Tokai University 4-1-1 Kitakaname, Hiratsuka-shi Kanagawa 259-1292 Japan
| | - Shinichi Koguchi
- Department of Chemistry Tokai University 4-1-1 Kitakaname, Hiratsuka-shi Kanagawa 259-1292 Japan
| | - Tetsuya Yamamoto
- Department of Materials Science and Engineering Graduate School of Engineering Tokyo Denki University 5 Senju-Asahi-cho, Adachi-ku Tokyo 120-8551 Japan
| |
Collapse
|
30
|
Al-Akhras AA, Zahra JA, El-Abadelah MM, Abu-Niaaj LF, Khanfar MA. 8-Amino-7-(aryl/hetaryl)fluoroquinolones. An emerging set of synthetic antibacterial agents. Z NATURFORSCH C 2023; 78:157-168. [PMID: 36278497 DOI: 10.1515/znc-2022-0143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Accepted: 09/28/2022] [Indexed: 11/15/2022]
Abstract
This study reports the synthesis of seven new 8-amino-7-(aryl/hetaryl)fluoroquinolones and their antibacterial activity against 10 bacteria associated with microbial infections and foodborne illnesses. These fluoroquinolones are prepared via the reactions of selected aryl(hetaryl)boronic acids with ethyl-7chloro-6-fluoro-8-nitroquinolone-3-carboxylate, under Suzuki-Miyaura cross-coupling conditions. Nitro group reduction of the latter resulted in the corresponding 8-aminoquinolone-3-esters which upon hydrolysis formed the respective 8-amino-7-(aryl/hetaryl)-quinolone-3-carboxylic acids. The latter compounds were tested against selected Gram-negative bacteria (Escherichia coli, Salmonella typhimurium, Pseudomonas aeruginosa, Acinetobacter baumannii, and Klebsiella pneumonia) and Gram-positive bacteria (Enterococcus feacalis, Listeria monocytogenes, Streptococcus agalactiae, Staphylococcus epidermidis, and Staphylococcus aureus). The tested fluoroquinolones showed a significant antimicrobial activity against most of the tested bacterial strains. The antimicrobial activity of some of the tested compounds were comparable to or higher than a wide range of standard antibiotics including ampicillin, ciprofloxacin, and imipenem. The results highlight the new synthesized 8-amino-7-(aryl/hetaryl)fluroquinolones as promising candidates for new antimicrobial drugs to treat bacterial infections. This study highlights that the newly synthetic 8-amino-7-(aryl/hetaryl)fluroquinolones are promising candidates for new antimicrobial drugs to treat human diseases including foodborne illnesses.
Collapse
Affiliation(s)
- Ala'a A Al-Akhras
- Chemistry Department, Faculty of Science, The University of Jordan, Amman, 11942, Jordan.,Chemistry Department, Faculty of Science, Jerash University, Jerash, Jordan
| | - Jalal A Zahra
- Chemistry Department, Faculty of Science, The University of Jordan, Amman, 11942, Jordan
| | - Mustafa M El-Abadelah
- Chemistry Department, Faculty of Science, The University of Jordan, Amman, 11942, Jordan
| | - Lubna F Abu-Niaaj
- Department of Agricultural and Life Sciences, College of Engineering, Science, Technology and Agriculture, Central State University, Wilberforce, OH 45384, USA
| | - Monther A Khanfar
- Chemistry Department, Faculty of Science, The University of Jordan, Amman, 11942, Jordan.,Department of Chemistry, Pure and Applied Chemistry Group, College of Sciences, University of Sharjah, Sharjah 27272, UAE
| |
Collapse
|
31
|
Kobatake M, Miyoshi N, Ueno M. One-Pot Tandem Coupling Method for the Short-Step Formal Synthesis of Riccardin C. Chemistry 2023; 29:e202203805. [PMID: 36573022 DOI: 10.1002/chem.202203805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Indexed: 12/28/2022]
Abstract
One-pot reactions reduce reagent amounts and circumvent process treatments, such as work-up and purifications in multi-step reactions. In this study, we achieved the formal total synthesis of riccardin C through a one-pot reaction by simultaneously linking four units through two Sonogashira coupling reactions and one Suzuki coupling reaction, followed by reduction and deprotection. Thus, this one-pot method comprised five steps and did not require the purification of intermediate reaction mixtures, which saves resources, such as reagents and solvents, and expedites the work process.
Collapse
Affiliation(s)
- Miho Kobatake
- Department of Natural Science, Graduate School of Sciences and Technology, Tokushima University, 2-1 Minami-jousanjima, Tokushima, 770-8506, Japan
| | - Norikazu Miyoshi
- Department of Natural Science, Graduate School of Sciences and Technology, Tokushima University, 2-1 Minami-jousanjima, Tokushima, 770-8506, Japan
| | - Masaharu Ueno
- Department of Natural Science, Graduate School of Sciences and Technology, Tokushima University, 2-1 Minami-jousanjima, Tokushima, 770-8506, Japan
| |
Collapse
|
32
|
Kinetic Aspects of Suzuki Cross-Coupling Using Ligandless Pd Nanoparticles Embedded in Aromatic Polymeric Matrix. Processes (Basel) 2023. [DOI: 10.3390/pr11030878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023] Open
Abstract
During the last decades, palladium nanoparticles (Pd(0) NPs) and Pd(II) compounds were shown to be attractive catalysts for fine organic synthesis. Nanostructured Pd(0) or Pd(II) catalysts have a relatively low environmental impact, but, at the same time, they are indispensable for such processes as Suzuki cross-coupling. This paper describes the preparation of Pd(0) or Pd(II) supported/embedded in hyper-cross-linked polystyrene (HPS) and compares their activity in Suzuki cross-coupling between phenylboronic acid and 4-bromoanisole. Obviously, the palladium charge (Pd(0) ↔ Pd(II)) changes continuously during the reaction catalytic cycle. It would seem that the use of the starting palladium in the form of Pd(0) or Pd(II) should not affect the reaction’s kinetic laws for both catalysts, but their special individuality is manifested between them. Nanoparticulate Pd(0) catalysts are stable during the reaction. In contrast, catalysts based on Pd(II) are extremely active in the initial period of the reaction, but then the “hot form” of the catalyst is rapidly converted into the form of Pd(0), whose activity is identical to that of the preliminarily reduced catalyst. This work discusses the possible nature of this phenomenon. A mathematical model for Suzuki cross-coupling reaction was suggested that was able to adequately describe experimental data. The level of reliability (R2) of the correlation between the experimental and calculated data was R2 = 0.97–0.99.
Collapse
|
33
|
Pérez-López AM, Belsom A, Fiedler L, Xin X, Rappsilber J. Dual-Bioorthogonal Catalysis by a Palladium Peptide Complex. J Med Chem 2023; 66:3301-3311. [PMID: 36820649 PMCID: PMC10009749 DOI: 10.1021/acs.jmedchem.2c01689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
Artificial metalloenzymes (ArMs) enrich bioorthogonal chemistry with new-to-nature reactions while limiting metal deactivation and toxicity. This enables biomedical applications such as activating therapeutics in situ. However, while combination therapies are becoming widespread anticancer treatments, dual catalysis by ArMs has not yet been shown. We present a heptapeptidic ArM with a novel peptide ligand carrying a methyl salicylate palladium complex. We observed that the peptide scaffold reduces metal toxicity while protecting the metal from deactivation by cellular components. Importantly, the peptide also improves catalysis, suggesting involvement in the catalytic reaction mechanism. Our work shows how a palladium-peptide homogeneous catalyst can simultaneously mediate two types of chemistry to synthesize anticancer drugs in human cells. Methyl salicylate palladium LLEYLKR peptide (2-Pd) succeeded to simultaneously produce paclitaxel by depropargylation, and linifanib by Suzuki-Miyaura cross-coupling in cell culture, thereby achieving combination therapy on non-small-cell lung cancer (NSCLC) A549 cells.
Collapse
Affiliation(s)
- Ana M Pérez-López
- Chair of Bioanalytics, Technische Universität Berlin, 10623 Berlin, Germany.,Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité─Universitätsmedizin Berlin, 10623 Berlin, Germany
| | - Adam Belsom
- Chair of Bioanalytics, Technische Universität Berlin, 10623 Berlin, Germany.,Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité─Universitätsmedizin Berlin, 10623 Berlin, Germany
| | - Linus Fiedler
- Chair of Bioanalytics, Technische Universität Berlin, 10623 Berlin, Germany.,Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité─Universitätsmedizin Berlin, 10623 Berlin, Germany
| | - Xiaoyi Xin
- Chair of Bioanalytics, Technische Universität Berlin, 10623 Berlin, Germany.,Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité─Universitätsmedizin Berlin, 10623 Berlin, Germany
| | - Juri Rappsilber
- Chair of Bioanalytics, Technische Universität Berlin, 10623 Berlin, Germany.,Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité─Universitätsmedizin Berlin, 10623 Berlin, Germany.,Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, U.K
| |
Collapse
|
34
|
Sumida A, Ogawa K, Imoto H, Naka K. Steric and electronic effects of arsa-Buchwald ligands on Suzuki-Miyaura coupling reaction. Dalton Trans 2023; 52:2838-2844. [PMID: 36756968 DOI: 10.1039/d2dt04139a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The Suzuki-Miyaura coupling (SMC) reaction is one of the most commonly used cross-coupling reactions. Bulky biaryldialkyl monophosphine ligands, i.e., Buchwald ligands, are beneficial for the SMC reaction. We recently developed a synthetic procedure for arsa-Buchwald ligands, arsenic analogs of Buchwald ligands, and found that these ligands are effective for sterically hindered substrates because of facilitating the transmetalation step owing to the longer arsenic-palladium bond. However, the relationship between the structure and steric/electronic properties of the arsa-Buchwald ligands has not yet been studied in detail. In this study, a series of arsa-Buchwald ligands with various alkyl substituents were synthesized. The cyclopentyl group afforded the highest catalytic activity for the SMC reaction, particularly with sterically hindered substrates. Furthermore, the steric/electronic properties of the arsa-Buchwald ligands were computationally analyzed.
Collapse
Affiliation(s)
- Akifumi Sumida
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology, Goshokaido-cho, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan.
| | - Kenta Ogawa
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology, Goshokaido-cho, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan.
| | - Hiroaki Imoto
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology, Goshokaido-cho, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan.
| | - Kensuke Naka
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology, Goshokaido-cho, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan. .,Materials Innovation Lab, Kyoto Institute of Technology, Goshokaido-cho, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan
| |
Collapse
|
35
|
Oda K, Nishiyama H, Nishida JI, Kawase T. 9,9-Bis[4-(N-aryl)phenyl]methylidene-xanthylidene Derivatives Displaying Mechano-, Crystallo-, and Thermochromism. Chempluschem 2023; 88:e202200360. [PMID: 36515279 DOI: 10.1002/cplu.202200360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/11/2022] [Indexed: 11/30/2022]
Abstract
Tetraphenylethylene (TPE) derivatives bearing a xanthene moiety are of interest because they have novel optical properties. 9,9-Bis[4-(N,N-diphenylamino)phenyl] and 9,9-bis[4-(9-carbazolyl)-phenyl]methylidene-xanthylidenes 3 and 4 were synthesized using Suzuki-Miyaura coupling of 9,9-dibromomethylidene-xanthylidene with the corresponding boronic acids. Diphenylamino derivative 3 exhibits mechanochromism and mechanofluorochromism (MC and MFC) reflected in absorption and fluorescence color changes. In contrast, carbazolyl derivative 4 displays thermo- and crystallo-chromism in addition to MC and MFC in the solid state. Powder X-ray diffraction and single crystal X-ray crystallographic analysis reveal that the solid state photophysical properties of these substances are governed by conformational changes rather by the creation of planar π-conjugation extended geometries.
Collapse
Affiliation(s)
- Kasane Oda
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo, 671-2280, Japan
| | - Hiroki Nishiyama
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo, 671-2280, Japan
| | - Jun-Ichi Nishida
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo, 671-2280, Japan
| | - Takeshi Kawase
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo, 671-2280, Japan
| |
Collapse
|
36
|
Preformed Pd(II) Catalysts Based on Monoanionic [N,O] Ligands for Suzuki-Miyaura Cross-Coupling at Low Temperature. Catalysts 2023. [DOI: 10.3390/catal13020303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
This paper describes the synthesis and catalytic testing of a palladium complex with a 5-membered chelating [N,O] ligand, derived from the condensation of 2,6-diisopropylphenyl aniline and maple lactone. This catalyst was active towards the Suzuki-Miyaura cross-coupling reaction, and its activity was optimised through the selection of base, solvent, catalytic loading and temperature. The optimised conditions are mild, occurring at room temperature and over a short timescale (1 h) using solvents considered to be ‘green’. A substrate scope was then carried out in which the catalyst showed good activity towards aryl bromides with electron-withdrawing groups. The catalyst was active across a broad scope of electron-donating and high-withdrawing aryl bromides with the highest activity shown for weak electron-withdrawing groups. The catalyst also showed good activity across a range of boronic acids and pinacol esters with even boronic acids featuring strong electron-withdrawing groups showing some activity. The catalyst was also a capable catalyst for the cross-coupling of aryl chlorides and phenylboronic acid. This more challenging reaction requires slightly elevated temperatures over a longer timescale but is still considered mild compared to similar examples in the literature.
Collapse
|
37
|
Palladium Supported on Bioinspired Materials as Catalysts for C–C Coupling Reactions. Catalysts 2023. [DOI: 10.3390/catal13010210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
In recent years, the immobilization of palladium nanoparticles on solid supports to prepare active and stable catalytic systems has been deeply investigated. Compared to inorganic materials, naturally occurring organic solids are inexpensive, available and abundant. Moreover, the surface of these solids is fully covered by chelating groups which can stabilize the metal nanoparticles. In the present review, we have focused our attention on natural biomaterials-supported metal catalysts applied to the formation of C–C bonds by Mizoroki–Heck, Suzuki–Miyaura and Sonogashira reactions. A systematic approach based on the nature of the organic matrix will be followed: (i) metal catalysts supported on cellulose; (ii) metal catalysts supported on starch; (iii) metal catalysts supported on pectin; (iv) metal catalysts supported on agarose; (v) metal catalysts supported on chitosan; (vi) metal catalysts supported on proteins and enzymes. We will emphasize the effective heterogeneity and recyclability of each catalyst, specifying which studies were carried out to evaluate these aspects.
Collapse
|
38
|
Sutar DJ, Zende SN, Kadam AN, Mali M, Mhaldar PM, Tapase A, Bathula C, Lee SW, Gokavi GS. Magnetically separable mixed metal oxide nanocomposite (Pd/MnFe2O4) for Suzuki cross-coupling in aqueous medium. J Organomet Chem 2023. [DOI: 10.1016/j.jorganchem.2022.122541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
39
|
Zhang Z, Fan K. Bioorthogonal nanozymes: an emerging strategy for disease therapy. NANOSCALE 2022; 15:41-62. [PMID: 36512377 DOI: 10.1039/d2nr05920g] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Transition metal catalysts (TMCs), capable of performing bioorthogonal reactions, have been engineered to trigger the formation of bioactive molecules in a controlled manner for biomedical applications. However, the widespread use of TMCs based biorthogonal reactions in vivo is still largely limited owing to their toxicity, poor stability, and insufficient targeting properties. The emergence of nanozymes (nanomaterials with enzyme-like activity), especially bioorthogonal nanozymes that combine the bioorthogonal catalytic activity of TMCs, the physicochemical properties of nanomaterials, and the enzymatic properties of classical nanozymes potentially provide opportunities to address these challenges. Thus, they can be used as multifunctional catalytic platforms for disease treatment and will be far-reaching. In this review, we first briefly recall the classical TMC-based bioorthogonal reactions. Furthermore, this review highlights the diverse strategies for manufacturing bioorthogonal nanozymes and their potential for therapeutic applications, with the goal of facilitating bioorthogonal catalysis in the clinic. Finally, we present challenges and the prospects of bioorthogonal nanozymes in bioorthogonal chemistry.
Collapse
Affiliation(s)
- Zheao Zhang
- CAS Engineering Laboratory for Nanozyme, Key Laboratory of Protein and Peptide Pharmaceutical, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, P. R. China.
| | - Kelong Fan
- CAS Engineering Laboratory for Nanozyme, Key Laboratory of Protein and Peptide Pharmaceutical, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, P. R. China.
- Nanozyme Medical Center, School of Basic Medical Sciences, Zhengzhou University, Zhengzhou 450052, China
- University of Chinese Academy of Sciences, Beijing 101408, China
| |
Collapse
|
40
|
Palladium-Catalyzed Synthesis of Novel Quinazolinylphenyl-1,3,4-thiadiazole Conjugates. Catalysts 2022. [DOI: 10.3390/catal12121586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Two novel series of symmetrical and unsymmetrical conjugates, in which 1,3,4-thiadiazole and 4-N,N-dimethylaminoquinazoline scaffolds were connected via 1,4-phenylene linker, were synthetized in high yields by Suzuki cross-coupling reactions. The elaborated protocol makes use of bromo-substituted quinazolines, boronic acid pinacol ester or diboronic acid bis(pinacol)ester of 2,5-diphenyl-1,3,4-thiadiazole, catalytic amounts of [1,10-bis(diphenylphosphino)ferrocene]dichloropalladium(II) Pd(dppf)Cl2, sodium carbonate, and tetrabutylammonium bromide, which plays the role of a phase-transfer catalyst. The structures of prepared compounds were confirmed by 1H NMR, 13C NMR, UV-VIS, IR and HRMS. For the target compounds, the fluorescence spectra were measured to determine their quantum yields and Stokes shifts. The study revealed that among the tested compounds, two highly-conjugated derivatives (8a, 9a), in which 1,3,4-thiadiazole core is connected to 4-(N,N-dimethylamino)quinazoline via a double 1,4-phenylene linker, exhibit high quantum yields of fluorescence and strong fluorescence emission.
Collapse
|
41
|
Single-Molecule Chemical Reactions Unveiled in Molecular Junctions. Processes (Basel) 2022. [DOI: 10.3390/pr10122574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022] Open
Abstract
Understanding chemical processes at the single-molecule scale represents the ultimate limit of analytical chemistry. Single-molecule detection techniques allow one to reveal the detailed dynamics and kinetics of a chemical reaction with unprecedented accuracy. It has also enabled the discoveries of new reaction pathways or intermediates/transition states that are inaccessible in conventional ensemble experiments, which is critical to elucidating their intrinsic mechanisms. Thanks to the rapid development of single-molecule junction (SMJ) techniques, detecting chemical reactions via monitoring the electrical current through single molecules has received an increasing amount of attention and has witnessed tremendous advances in recent years. Research efforts in this direction have opened a new route for probing chemical and physical processes with single-molecule precision. This review presents detailed advancements in probing single-molecule chemical reactions using SMJ techniques. We specifically highlight recent progress in investigating electric-field-driven reactions, reaction dynamics and kinetics, host–guest interactions, and redox reactions of different molecular systems. Finally, we discuss the potential of single-molecule detection using SMJs across various future applications.
Collapse
|
42
|
Rosadoni E, Banchini F, Bellini S, Lessi M, Pasquinelli L, Bellina F. Ligandless Palladium-Catalyzed Direct C-5 Arylation of Azoles Promoted by Benzoic Acid in Anisole. Molecules 2022; 27:molecules27238454. [PMID: 36500546 PMCID: PMC9735507 DOI: 10.3390/molecules27238454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 11/26/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022] Open
Abstract
The palladium-catalyzed direct arylation of azoles with (hetero)aryl halides is nowadays one of the most versatile and efficient procedures for the selective synthesis of heterobiaryls. Although this procedure is, due to its characteristics, also of great interest in the industrial field, the wide use of a reaction medium such as DMF or DMA, two polar aprotic solvents coded as dangerous according to environmental, health, safety (EHS) parameters, strongly limits its actual use. In contrast, the use of aromatic solvents as the reaction medium for direct arylations, although some of them show good EHS values, is poorly reported, probably due to their low solvent power against reagents and their potential involvement in undesired side reactions. In this paper we report an unprecedented selective C-5 arylation procedure involving anisole as an EHS green reaction solvent. In addition, the beneficial role of benzoic acid as an additive was also highlighted, a role that had never been previously described.
Collapse
Affiliation(s)
- Elisabetta Rosadoni
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Federico Banchini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Sara Bellini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Marco Lessi
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Luca Pasquinelli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Fabio Bellina
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
- Consorzio C.I.N.M.P.I.S., Via E. Orabona 4, 70125 Bari, Italy
- Correspondence:
| |
Collapse
|
43
|
Riva L, Nicastro G, Liu M, Battocchio C, Punta C, Sacchetti A. Pd-Loaded Cellulose NanoSponge as a Heterogeneous Catalyst for Suzuki-Miyaura Coupling Reactions. Gels 2022; 8:gels8120789. [PMID: 36547313 PMCID: PMC9778444 DOI: 10.3390/gels8120789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 11/23/2022] [Accepted: 11/29/2022] [Indexed: 12/03/2022] Open
Abstract
The (eco)design and synthesis of durable heterogeneous catalysts starting from renewable sources derived from biomass waste represents an important step for reducing environmental impacts of organic transformations. Herein, we report the efficient loading of Pd(II) ions on an eco-safe cellulose-based organic support (CNS), obtained by thermal cross-linking between TEMPO-oxidized cellulose nanofibers and branched polyethyleneimine in the presence of citric acid. A 22.7% w/w Pd-loading on CNS was determined by the ICP-OES technique, while the metal distribution on the xerogel was evidenced by SEM-EDS analysis. XPS analysis confirmed the direct chelation of Pd(II) ions by means of the high number of amino groups present in the network, so that further functionalization of the support with specific ligands was not necessary. The new composite turned to be an efficient heterogeneous pre-catalyst for promoting Suzuki-Miyaura coupling reactions between aryl halides and phenyl boronic acid in water, obtaining yields higher than 90% in 30 min, by operating in a microwave reactor at 100 °C and with just 2% w/w of CNS-Pd catalyst with respect to aryl halides (4.5‱ for Pd). At the end of first reaction cycle, Pd(II) ions on the support resulted in being reduced to Pd(0) while maintaining the same catalytic efficiency. In fact, no leaching was observed at the end of reactions, and five cycles of recycling and reusing of CNS-Pd catalyst provided excellent results in terms of yields and selectivity in the desired products.
Collapse
Affiliation(s)
- Laura Riva
- Department of Chemistry, Materials, and Chemical Engineering “G. Natta” and INSTM Local Unit, Politecnico di Milano, 20131 Milan, Italy
| | - Gloria Nicastro
- Department of Chemistry, Materials, and Chemical Engineering “G. Natta” and INSTM Local Unit, Politecnico di Milano, 20131 Milan, Italy
| | - Mingchong Liu
- Department of Chemistry, Materials, and Chemical Engineering “G. Natta” and INSTM Local Unit, Politecnico di Milano, 20131 Milan, Italy
| | - Chiara Battocchio
- Department of Science, Roma Tre University, Via della Vasca Navale 79, 00146 Rome, Italy
| | - Carlo Punta
- Department of Chemistry, Materials, and Chemical Engineering “G. Natta” and INSTM Local Unit, Politecnico di Milano, 20131 Milan, Italy
- Istituto di Scienze e Tecnologie Chimiche, “Giulio Natta” (SCITEC), National Research Council-CNR, 20131 Milan, Italy
| | - Alessandro Sacchetti
- Department of Chemistry, Materials, and Chemical Engineering “G. Natta” and INSTM Local Unit, Politecnico di Milano, 20131 Milan, Italy
- Correspondence: ; Tel.: +39-0223993017
| |
Collapse
|
44
|
Modified Boron Nitride Nanosheets-Loaded Palladium Nanoparticles: An Air-Stable, Highly Active, and Recyclable Multiphase Catalyst for the Suzuki Reaction. Catal Letters 2022. [DOI: 10.1007/s10562-022-04160-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
45
|
Polydentate P, N-based ligands for palladium-catalyzed cross-coupling reactions. MOLECULAR CATALYSIS 2022. [DOI: 10.1016/j.mcat.2022.112699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
46
|
Pan S, Gao C, Gui J, Hu B, Gai L, Qiao C, Liu C. Hierarchical TiO2 Microspheres Supported Ultrasmall Palladium Nanocrystals: a Highly Efficient Catalyst for Suzuki Reaction. ARAB J CHEM 2022. [DOI: 10.1016/j.arabjc.2022.104410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
|
47
|
Tomasini M, Caporaso L, Trouvé J, Poater J, Gramage‐Doria R, Poater A. Unravelling Enzymatic Features in a Supramolecular Iridium Catalyst by Computational Calculations. Chemistry 2022; 28:e202201970. [PMID: 35788999 PMCID: PMC9804516 DOI: 10.1002/chem.202201970] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Indexed: 01/05/2023]
Abstract
Non-biological catalysts following the governing principles of enzymes are attractive systems to disclose unprecedented reactivities. Most of those existing catalysts feature an adaptable molecular recognition site for substrate binding that are prone to undergo conformational selection pathways. Herein, we present a non-biological catalyst that is able to bind substrates via the induced fit model according to in-depth computational calculations. The system, which is constituted by an inflexible substrate-recognition site derived from a zinc-porphyrin in the second coordination sphere, features destabilization of ground states as well as stabilization of transition states for the relevant iridium-catalyzed C-H bond borylation of pyridine. In addition, this catalyst appears to be most suited to tightly bind the transition state rather than the substrate. Besides these features, which are reminiscent of the action modes of enzymes, new elementary catalytic steps (i. e. C-B bond formation and catalyst regeneration) have been disclosed owing to the unique distortions encountered in the different intermediates and transition states.
Collapse
Affiliation(s)
- Michele Tomasini
- Institut de Química Computacional i CatàlisiDepartament de QuímicaUniversitat de Gironac/Mª Aurèlia Capmany 6917003GironaCataloniaSpain,Department of ChemistryUniversity of SalernoVia Ponte Don Melillo84084FiscianoItaly
| | - Lucia Caporaso
- Department of ChemistryUniversity of SalernoVia Ponte Don Melillo84084FiscianoItaly
| | | | - Jordi Poater
- Departament de Química Inorgànica i Orgànica & IQTCUBUniversitat de Barcelona08028BarcelonaSpain,ICREA08010BarcelonaSpain
| | | | - Albert Poater
- Institut de Química Computacional i CatàlisiDepartament de QuímicaUniversitat de Gironac/Mª Aurèlia Capmany 6917003GironaCataloniaSpain
| |
Collapse
|
48
|
Cuccu F, De Luca L, Delogu F, Colacino E, Solin N, Mocci R, Porcheddu A. Mechanochemistry: New Tools to Navigate the Uncharted Territory of "Impossible" Reactions. CHEMSUSCHEM 2022; 15:e202200362. [PMID: 35867602 PMCID: PMC9542358 DOI: 10.1002/cssc.202200362] [Citation(s) in RCA: 50] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 06/01/2022] [Indexed: 05/10/2023]
Abstract
Mechanochemical transformations have made chemists enter unknown territories, forcing a different chemistry perspective. While questioning or revisiting familiar concepts belonging to solution chemistry, mechanochemistry has broken new ground, especially in the panorama of organic synthesis. Not only does it foster new "thinking outside the box", but it also has opened new reaction paths, allowing to overcome the weaknesses of traditional chemistry exactly where the use of well-established solution-based methodologies rules out progress. In this Review, the reader is introduced to an intriguing research subject not yet fully explored and waiting for improved understanding. Indeed, the study is mainly focused on organic transformations that, although impossible in solution, become possible under mechanochemical processing conditions, simultaneously entailing innovation and expanding the chemical space.
Collapse
Affiliation(s)
- Federico Cuccu
- Dipartimento di Scienze Chimiche e GeologicheUniversità degli Studi di CagliariCittadella Universitaria09042Monserrato, CagliariItaly
| | - Lidia De Luca
- Dipartimento di Chimica e FarmaciaUniversità degli Studi di Sassarivia Vienna 207100SassariItaly
| | - Francesco Delogu
- Dipartimento di Ingegneria Meccanica, Chimica e dei MaterialiUniversità degli Studi di CagliariVia Marengo 209123CagliariItaly
| | | | - Niclas Solin
- Department of PhysicsChemistry and Biology (IFM)Electronic and Photonic Materials (EFM)Building Fysikhuset, Room M319, CampusVallaSweden
| | - Rita Mocci
- Dipartimento di Scienze Chimiche e GeologicheUniversità degli Studi di CagliariCittadella Universitaria09042Monserrato, CagliariItaly
| | - Andrea Porcheddu
- Dipartimento di Scienze Chimiche e GeologicheUniversità degli Studi di CagliariCittadella Universitaria09042Monserrato, CagliariItaly
| |
Collapse
|
49
|
Tomasini M, Zhang J, Zhao H, Besalú E, Falivene L, Caporaso L, Szostak M, Poater A. A predictive journey towards trans-thioamides/amides. Chem Commun (Camb) 2022; 58:9950-9953. [PMID: 35983851 DOI: 10.1039/d2cc04228b] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cis-trans isomerization of (thio)amides was studied by DFT calculations to get the model for the higher preference for the cis conformation by guided predictive chemistry, suggesting how to select the alkyl/aryl substituents on the C/N atoms that lead to the trans isomer. Multilinear analysis, together with cross-validation analysis, helped to select the best fitting parameters to achieve the energy barriers of the cis to trans interconversion, as well as the relative stability between both isomers. Double experimental check led to the synthesis of the best trans candidate with sterically demanding t-butyl substituents, confirming the utility of predictive chemistry, bridging organic and computational chemistry.
Collapse
Affiliation(s)
- Michele Tomasini
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain. .,Dipartimento di Chimica e Biologia, Università di Salerno, Via Ponte don Melillo, 84084, Fisciano, Italy
| | - Jin Zhang
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, 6 Xuefu Road, Xi'an, 710021, China
| | - Hui Zhao
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, 6 Xuefu Road, Xi'an, 710021, China
| | - Emili Besalú
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain.
| | - Laura Falivene
- Dipartimento di Chimica e Biologia, Università di Salerno, Via Ponte don Melillo, 84084, Fisciano, Italy
| | - Lucia Caporaso
- Dipartimento di Chimica e Biologia, Università di Salerno, Via Ponte don Melillo, 84084, Fisciano, Italy
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ, 07102, USA
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain.
| |
Collapse
|
50
|
Banda P, Mucherla R. Palladium-Supported Polydopamine-Coated NiFe 2O 4@TiO 2: A Sole Photocatalyst for Suzuki and Sonogashira Coupling Reactions under Sunlight Irradiation. ACS OMEGA 2022; 7:29356-29368. [PMID: 36033688 PMCID: PMC9404510 DOI: 10.1021/acsomega.2c03603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 07/19/2022] [Indexed: 06/15/2023]
Abstract
The effective utilization of solar energy in synthetic organic chemistry has gained extensive attention owing to its enormous energy and environmentally benign nature. In this context, we designed and synthesized a magnetically retrievable, sole palladium (Pd)-supported polydopamine-coated core@shell (NiFe2O4@TiO2) heterogeneous nanophotocatalyst for Suzuki and Sonogashira coupling reactions under sunlight irradiation. The synthesized catalyst was characterized by powder X-ray diffraction (PXRD), Fourier-transform infrared, UV-vis, scanning electron microscopy, energy-dispersive X-ray spectroscopy, transmission electron microscopy, X-ray photoelectron spectroscopy, and vibrating sample magnetometer analysis. The photocatalytic activity of the synthesized nanocatalyst under sunlight irradiation was assessed for both Suzuki and Sonogashira coupling reactions, where it worked excellently well with a high yield of the product up to 98 and 96%, respectively. Its efficacy was also investigated in the conversion of substituted substrates in both the coupling reactions into desired biaryls and diarylacetylenes. Unique features of the synthesized catalyst are (i) its effective performance for both the aforesaid coupling reactions under ambient reaction conditions for a short reaction time in polar protic solvents (ethanolic water/EtOH) with good yield without any byproduct, (ii) magnetic retrieval of the catalyst from the reaction mixture employing an external magnet is an added advantage, and (iii) the retrieved catalyst could potentially be reutilized for up to five consecutive runs without appreciable diminution of catalytic efficacy, and its stability was confirmed by inductively coupled plasma optical emission spectroscopy analysis and XRD.
Collapse
|