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Nguyen HTT, Le GTH, Park SG, Jadhav DA, Le TTQ, Kim H, Vinayak V, Lee G, Yoo K, Song YC, Chae KJ. Optimizing electrochemically active microorganisms as a key player in the bioelectrochemical system: Identification methods and pathways to large-scale implementation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 914:169766. [PMID: 38181955 DOI: 10.1016/j.scitotenv.2023.169766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 12/15/2023] [Accepted: 12/28/2023] [Indexed: 01/07/2024]
Abstract
The rapid global economic growth driven by industrialization and population expansion has resulted in significant issues, including reliance on fossil fuels, energy scarcity, water crises, and environmental emissions. To address these issues, bioelectrochemical systems (BES) have emerged as a dual-purpose solution, harnessing electrochemical processes and the capabilities of electrochemically active microorganisms (EAM) to simultaneously recover energy and treat wastewater. This review examines critical performance factors in BES, including inoculum selection, pretreatment methods, electrodes, and operational conditions. Further, authors explore innovative approaches to suppress methanogens and simultaneously enhance the EAM in mixed cultures. Additionally, advanced techniques for detecting EAM are discussed. The rapid detection of EAM facilitates the selection of suitable inoculum sources and optimization of enrichment strategies in BESs. This optimization is essential for facilitating the successful scaling up of BES applications, contributing substantially to the realization of clean energy and sustainable wastewater treatment. This analysis introduces a novel viewpoint by amalgamating contemporary research on the selective enrichment of EAM in mixed cultures. It encompasses identification and detection techniques, along with methodologies tailored for the selective enrichment of EAM, geared explicitly toward upscaling applications in BES.
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Affiliation(s)
- Ha T T Nguyen
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Department of Convergence Study on the Ocean Science and Technology, Ocean Science and Technology School (OST), Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Giang T H Le
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Sung-Gwan Park
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Dipak A Jadhav
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Trang T Q Le
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Hyunsu Kim
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Vandana Vinayak
- Diatom Nanoengineering and Metabolism Laboratory (DNM), School of Applied Science, Dr. Hari Singh Gour Central University, Sagar, MP 470003, India
| | - Gihan Lee
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Keunje Yoo
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea
| | - Young-Chae Song
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea.
| | - Kyu-Jung Chae
- Department of Environmental Engineering, College of Ocean Science and Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea; Interdisciplinary Major of Ocean Renewable Energy Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-gu, Busan 49112, Republic of Korea.
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Zhang B, Shi S, Tang R, Qiao C, Yang M, You Z, Shao S, Wu D, Yu H, Zhang J, Cao Y, Li F, Song H. Recent advances in enrichment, isolation, and bio-electrochemical activity evaluation of exoelectrogenic microorganisms. Biotechnol Adv 2023; 66:108175. [PMID: 37187358 DOI: 10.1016/j.biotechadv.2023.108175] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 05/10/2023] [Accepted: 05/10/2023] [Indexed: 05/17/2023]
Abstract
Exoelectrogenic microorganisms (EEMs) catalyzed the conversion of chemical energy to electrical energy via extracellular electron transfer (EET) mechanisms, which underlay diverse bio-electrochemical systems (BES) applications in clean energy development, environment and health monitoring, wearable/implantable devices powering, and sustainable chemicals production, thereby attracting increasing attentions from academic and industrial communities in the recent decades. However, knowledge of EEMs is still in its infancy as only ~100 EEMs of bacteria, archaea, and eukaryotes have been identified, motivating the screening and capture of new EEMs. This review presents a systematic summarization on EEM screening technologies in terms of enrichment, isolation, and bio-electrochemical activity evaluation. We first generalize the distribution characteristics of known EEMs, which provide a basis for EEM screening. Then, we summarize EET mechanisms and the principles underlying various technological approaches to the enrichment, isolation, and bio-electrochemical activity of EEMs, in which a comprehensive analysis of the applicability, accuracy, and efficiency of each technology is reviewed. Finally, we provide a future perspective on EEM screening and bio-electrochemical activity evaluation by focusing on (i) novel EET mechanisms for developing the next-generation EEM screening technologies, and (ii) integration of meta-omics approaches and bioinformatics analyses to explore nonculturable EEMs. This review promotes the development of advanced technologies to capture new EEMs.
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Affiliation(s)
- Baocai Zhang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Sicheng Shi
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Rui Tang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Chunxiao Qiao
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Meiyi Yang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Zixuan You
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Shulin Shao
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Deguang Wu
- Department of Brewing Engineering, Moutai Institute, Luban Ave, Renhuai 564507, Guizhou, PR China
| | - Huan Yu
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Junqi Zhang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Yingxiu Cao
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Feng Li
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China.
| | - Hao Song
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China.
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Pereira J, de Nooy S, Sleutels T, Ter Heijne A. Opportunities for visual techniques to determine characteristics and limitations of electro-active biofilms. Biotechnol Adv 2022; 60:108011. [PMID: 35753624 DOI: 10.1016/j.biotechadv.2022.108011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 05/10/2022] [Accepted: 06/18/2022] [Indexed: 11/02/2022]
Abstract
Optimization of bio-electrochemical systems (BESs) relies on a better understanding of electro-active biofilms (EABfs). These microbial communities are studied with a range of techniques, including electrochemical, visual and chemical techniques. Even though each of these techniques provides very valuable and wide-ranging information about EABfs, such as performance, morphology and biofilm composition, they are often destructive. Therefore, the information obtained from EABfs development and characterization studies are limited to a single characterization of EABfs and often limited to one time point that determines the end of the experiment. Despite being scarcer and not as commonly reported as destructive techniques, non-destructive visual techniques can be used to supplement EABfs characterization by adding in-situ information of EABfs functioning and its development throughout time. This opens the door to EABfs monitoring studies that can complement the information obtained with destructive techniques. In this review, we provide an overview of visual techniques and discuss the opportunities for combination with the established electrochemical techniques to study EABfs. By providing an overview of suitable visual techniques and discussing practical examples of combination of visual with electrochemical methods, this review aims at serving as a source of inspiration for future studies in the field of BESs.
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Affiliation(s)
- João Pereira
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands; Environmental Technology, Wageningen University, Bornse Weilanden 9, 6708, WG, Wageningen, the Netherlands
| | - Sam de Nooy
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands; Environmental Technology, Wageningen University, Bornse Weilanden 9, 6708, WG, Wageningen, the Netherlands
| | - Tom Sleutels
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911, MA, Leeuwarden, the Netherlands; Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, the Netherlands
| | - Annemiek Ter Heijne
- Environmental Technology, Wageningen University, Bornse Weilanden 9, 6708, WG, Wageningen, the Netherlands.
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Scarabotti F, Bühler K, Schmidt M, Harnisch F. Thickness and roughness of transparent gold-palladium anodes have no impact on growth kinetics and yield coefficients of early-stage Geobacter sulfurreducens biofilms. Bioelectrochemistry 2022; 144:108043. [PMID: 34959027 DOI: 10.1016/j.bioelechem.2021.108043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Revised: 11/24/2021] [Accepted: 12/13/2021] [Indexed: 01/05/2023]
Abstract
Geobacter sulfurreducens is the model organism for electroactive microorganisms performing direct extracellular electron transfer and forming thick mature biofilm electrodes. Although numerous physiological properties of mature biofilm electrodes are deciphered, there is an extensive gap of knowledge on the early-stage biofilm formation. We have shown recently that transparent gold-palladium (AuPd) electrodes allow for analysis of early-stage biofilm formation using confocal laser scanning microscopy. Here we analysed the influence of thickness (ranging from 12.5 to 200 nm) and roughness of AuPd electrodes on physiological parameters of G. sulfurreducens early-stage biofilms. We show that when grown potentiostatically at -200 mV vs. Ag/ AgCl sat. KCl neither maximum current density (jmax of ∼ 80-150 µA cm-2) nor lag time (lag t of ∼ 0.2-0.4 days) or single cell yield coefficients (YNe of 1.43 × 1012 cells mole--1) of the biofilms are influenced by the electrode preparation. This confirms the robustness of the experimental approach, which is an inevitable prerequisite for obtaining reliable results in follow-up experiments.
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Affiliation(s)
- Francesco Scarabotti
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Katja Bühler
- Department Solar Materials, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Matthias Schmidt
- Department of Isotope Biogeochemistry, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany.
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Jo J, Price-Whelan A, Dietrich LEP. Gradients and consequences of heterogeneity in biofilms. Nat Rev Microbiol 2022; 20:593-607. [PMID: 35149841 DOI: 10.1038/s41579-022-00692-2] [Citation(s) in RCA: 70] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/11/2022] [Indexed: 12/15/2022]
Abstract
Historically, appreciation for the roles of resource gradients in biology has fluctuated inversely to the popularity of genetic mechanisms. Nevertheless, in microbiology specifically, widespread recognition of the multicellular lifestyle has recently brought new emphasis to the importance of resource gradients. Most microorganisms grow in assemblages such as biofilms or spatially constrained communities with gradients that influence, and are influenced by, metabolism. In this Review, we discuss examples of gradient formation and physiological differentiation in microbial assemblages growing in diverse settings. We highlight consequences of physiological heterogeneity in microbial assemblages, including division of labour and increased resistance to stress. Our impressions of microbial behaviour in various ecosystems are not complete without complementary maps of the chemical and physical geographies that influence cellular activities. A holistic view, incorporating these geographies and the genetically encoded functions that operate within them, will be essential for understanding microbial assemblages in their many roles and potential applications.
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Affiliation(s)
- Jeanyoung Jo
- Department of Biological Sciences, Columbia University, New York, NY, USA
| | - Alexa Price-Whelan
- Department of Biological Sciences, Columbia University, New York, NY, USA
| | - Lars E P Dietrich
- Department of Biological Sciences, Columbia University, New York, NY, USA.
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Yang K, Zhao Y, Zhou X, Wang Q, Pedersen TH, Jia Z, Cabrera J, Ji M. "Self-degradation" of 2-chlorophenol in a sequential cathode-anode cascade mode bioelectrochemical system. WATER RESEARCH 2021; 206:117740. [PMID: 34688096 DOI: 10.1016/j.watres.2021.117740] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 09/14/2021] [Accepted: 10/03/2021] [Indexed: 06/13/2023]
Abstract
A sequential cathode-anode cascade mode bioelectrochemical system (BES) was designed and developed to achieve the "self-degradation" of 2-chlorophenol (2-CP). With the cooperation of cathode and anode, the electrons supplied for the cathode 2-CP dechlorination come from its own dechlorinated product in the anode, phenol. Separate degradation experiments of cathode 2-CP and anode phenol were firstly conducted. The optimum concentration ratio of anode acetate to phenolic compound (3.66/1.56) and the phenolic compound degradation ability of BES were investigated. With the formation of the bioanode able to degrade phenol, the sequential cathode-anode cascade mode BES was further developed, where 2-CP could achieve sequential dechlorination and ring-cleavage degradation. When applied voltage was 0.6 V and cathode influent pH was 7, 1.56 mM 2-CP reached 80.15% cathode dechlorination efficiency and 58.91% total cathode-anode phenolic compounds degradation efficiency. The bioanodes played a decisive role in BES. Different operating conditions would affect the overall performance of BES by changing the electrochemical activity and microbial community structure of the bioanodes. This study demonstrated the feasibility of the sequential cathode-anode cascade mode BES to degrade 2-CP wastewater and provided perspectives for the cooperation of cathode and anode, aiming to explore more potential of BES in wastewater treatment field.
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Affiliation(s)
- Kaichao Yang
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China
| | - Yingxin Zhao
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China.
| | - Xu Zhou
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China
| | - Qian Wang
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China
| | - Thomas Helmer Pedersen
- Department of Energy Technology, Aalborg University, Pontoppidanstræde 111, 9220 Aalborg Øst, Denmark
| | - Zhichao Jia
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China
| | - Jonnathan Cabrera
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China
| | - Min Ji
- School of Environmental Science and Engineering, Tianjin University, No. 135 Yaguan Road, Jinnan District, Tianjin 300350, China
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Joshi K, Chan CH, Bond DR. Geobacter sulfurreducens inner membrane cytochrome CbcBA controls electron transfer and growth yield near the energetic limit of respiration. Mol Microbiol 2021; 116:1124-1139. [PMID: 34423503 DOI: 10.1111/mmi.14801] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/18/2021] [Accepted: 08/19/2021] [Indexed: 12/24/2022]
Abstract
Geobacter sulfurreducens utilizes extracellular electron acceptors such as Mn(IV), Fe(III), syntrophic partners, and electrodes that vary from +0.4 to -0.3 V versus standard hydrogen electrode (SHE), representing a potential energy span that should require a highly branched electron transfer chain. Here we describe CbcBA, a bc-type cytochrome essential near the thermodynamic limit of respiration when acetate is the electron donor. Mutants-lacking cbcBA ceased Fe(III) reduction at -0.21 V versus SHE, could not transfer electrons to electrodes between -0.21 and -0.28 V, and could not reduce the final 10%-35% of Fe(III) minerals. As redox potential decreased during Fe(III) reduction, cbcBA was induced with the aid of the regulator BccR to become one of the most highly expressed genes in G. sulfurreducens. Growth yield (CFU/mM Fe(II)) was 112% of WT in ∆cbcBA, and deletion of cbcL (an unrelated bc-cytochrome essential near -0.15 V) in ΔcbcBA increased yield to 220%. Together with ImcH, which is required at high redox potentials, CbcBA represents a third cytoplasmic membrane oxidoreductase in G. sulfurreducens. This expanding list shows how metal-reducing bacteria may constantly sense redox potential to adjust growth efficiency in changing environments.
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Affiliation(s)
- Komal Joshi
- The BioTechnology Institute, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA.,Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA
| | - Chi Ho Chan
- The BioTechnology Institute, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA
| | - Daniel R Bond
- The BioTechnology Institute, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA.,Department of Plant and Microbial Biology, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA
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Evidence of a Streamlined Extracellular Electron Transfer Pathway from Biofilm Structure, Metabolic Stratification, and Long-Range Electron Transfer Parameters. Appl Environ Microbiol 2021; 87:e0070621. [PMID: 34190605 PMCID: PMC8357294 DOI: 10.1128/aem.00706-21] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
A strain of Geobacter sulfurreducens, an organism capable of respiring solid extracellular substrates, lacking four of five outer membrane cytochrome complexes (extABCD+ strain) grows faster and produces greater current density than the wild type grown under identical conditions. To understand cellular and biofilm modifications in the extABCD+ strain responsible for this increased performance, biofilms grown using electrodes as terminal electron acceptors were sectioned and imaged using electron microscopy to determine changes in thickness and cell density, while parallel biofilms incubated in the presence of nitrogen and carbon isotopes were analyzed using NanoSIMS (nanoscale secondary ion mass spectrometry) to quantify and localize anabolic activity. Long-distance electron transfer parameters were measured for wild-type and extABCD+ biofilms spanning 5-μm gaps. Our results reveal that extABCD+ biofilms achieved higher current densities through the additive effects of denser cell packing close to the electrode (based on electron microscopy), combined with higher metabolic rates per cell compared to the wild type (based on increased rates of 15N incorporation). We also observed an increased rate of electron transfer through extABCD+ versus wild-type biofilms, suggesting that denser biofilms resulting from the deletion of unnecessary multiheme cytochromes streamline electron transfer to electrodes. The combination of imaging, physiological, and electrochemical data confirms that engineered electrogenic bacteria are capable of producing more current per cell and, in combination with higher biofilm density and electron diffusion rates, can produce a higher final current density than the wild type. IMPORTANCE Current-producing biofilms in microbial electrochemical systems could potentially sustain technologies ranging from wastewater treatment to bioproduction of electricity if the maximum current produced could be increased and current production start-up times after inoculation could be reduced. Enhancing the current output of microbial electrochemical systems has been mostly approached by engineering physical components of reactors and electrodes. Here, we show that biofilms formed by a Geobacter sulfurreducens strain producing ∼1.4× higher current than the wild type results from a combination of denser cell packing and higher anabolic activity, enabled by an increased rate of electron diffusion through the biofilms. Our results confirm that it is possible to engineer electrode-specific G. sulfurreducens strains with both faster growth on electrodes and streamlined electron transfer pathways for enhanced current production.
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Nath D, Das S, Ghangrekar MM. High throughput techniques for the rapid identification of electroactive microorganisms. CHEMOSPHERE 2021; 285:131489. [PMID: 34265713 DOI: 10.1016/j.chemosphere.2021.131489] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 06/20/2021] [Accepted: 07/06/2021] [Indexed: 02/08/2023]
Abstract
Electroactive microorganisms (EAM), capable of executing extracellular electron transfer (EET) in/out of a cell, are employed in microbial electrochemical technologies (MET) and bioelectronics for harnessing electricity from wastewater, bioremediation and as biosensors. Thus, investigation on EAM is becoming a topic of interest for multidisciplinary areas, such as environmental science, energy and health sectors. Though, EAM are widespread in three domains of life, nevertheless, only a few hundred EAM have been identified so far and hence, the rapid identification of EAM is imperative. In this review, the techniques that are developed for the direct identification of EAM, such as azo dye and WO3 based techniques, dielectrophoresis, potentiostatic/galvanometric techniques, and other indirect methods, such as spectroscopy and molecular biology techniques, are highlighted with a special focus on time required for the detection of these EAM. The bottlenecks for identifying EAM and the knowledge gaps based on the present investigations are also discussed. Thus, this review is intended to encourage researchers for devolving high-throughput techniques for identifying EAM with more accuracy, while consuming less time.
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Affiliation(s)
- Dibyojyoty Nath
- School of Environmental Science & Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Sovik Das
- Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - M M Ghangrekar
- School of Environmental Science & Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India; Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
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He X, Chadwick G, Jiménez Otero F, Orphan V, Meile C. Spatially Resolved Electron Transport through Anode‐Respiring
Geobacter sulfurreducens
Biofilms: Controls and Constraints. ChemElectroChem 2021. [DOI: 10.1002/celc.202100111] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Xiaojia He
- Department of Marine Sciences University of Georgia Athens GA USA
| | - Grayson Chadwick
- Division of Geological and Planetary Sciences California Institute of Technology Pasadena CA USA
| | | | - Victoria Orphan
- Division of Geological and Planetary Sciences California Institute of Technology Pasadena CA USA
| | - Christof Meile
- Department of Marine Sciences University of Georgia Athens GA USA
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Abstract
Electricity-producing bacteria are potential power sources, fermentation platforms, and desalination systems, if current densities could be increased. These organisms form conductive biofilms on electrodes, allowing new cell layers to contribute to current production until a limit is reached, but the biological underpinning of this limit is not well-understood. We investigated the limitation behind this phenomenon using stable isotope probing and nanoscale secondary ion mass spectrometry, showing active cells are restricted to layers closest to the electrode. This metabolic observation fundamentally changes our understanding of electron flow and cell growth within current-producing biofilms and provides constraints on the physical structure of natural communities reliant on this process for growth. We predict improvements in biofilm conductivity will yield higher current-producing systems. Metal-reducing bacteria direct electrons to their outer surfaces, where insoluble metal oxides or electrodes act as terminal electron acceptors, generating electrical current from anaerobic respiration. Geobacter sulfurreducens is a commonly enriched electricity-producing organism, forming thick conductive biofilms that magnify total activity by supporting respiration of cells not in direct contact with electrodes. Hypotheses explaining why these biofilms fail to produce higher current densities suggest inhibition by formation of pH, nutrient, or redox potential gradients; but these explanations are often contradictory, and a lack of direct measurements of cellular growth within biofilms prevents discrimination between these models. To address this fundamental question, we measured the anabolic activity of G. sulfurreducens biofilms using stable isotope probing coupled to nanoscale secondary ion mass spectrometry (nanoSIMS). Our results demonstrate that the most active cells are at the anode surface, and that this activity decreases with distance, reaching a minimum 10 µm from the electrode. Cells nearest the electrode continue to grow at their maximum rate in weeks-old biofilms 80-µm-thick, indicating nutrient or buffer diffusion into the biofilm is not rate-limiting. This pattern, where highest activity occurs at the electrode and declines with each cell layer, is present in thin biofilms (<5 µm) and fully grown biofilms (>20 µm), and at different anode redox potentials. These results suggest a growth penalty is associated with respiring insoluble electron acceptors at micron distances, which has important implications for improving microbial electrochemical devices as well as our understanding of syntrophic associations harnessing the phenomenon of microbial conductivity.
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Lebedev N, Stroud RM, Yates MD, Tender LM. Spatially Resolved Chemical Analysis of Geobacter sulfurreducens Cell Surface. ACS NANO 2019; 13:4834-4842. [PMID: 30943001 DOI: 10.1021/acsnano.9b02032] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Geobacter sulfurreducens is of interest for the highest efficiency of power generation and extremely long extracellular electron transfer (EET) between the bacterium and electrodes. Despite more than 15 years of intensive molecular biological research, there is still no clear answer which molecules are responsible for these processes. In the present work, we look at the problem from another (atomic) perspective and identify the location and shape of the compounds that are known to be conductive, particularly those containing Fe atoms. By using highly sophisticated energy dispersive X-ray spectroscopy combined with high-angle annular dark-field transmission electron microscopy enabling detection, identification, and localization of chemical compounds on the surface at nearly atomic spatial resolution, we analyze Fe spatial distribution within the G. sulfurreducens community. We discover the presence of small Fe-containing particles on the surface of the bacterium cells. The size of the particles (diameter 5.6 nm) is highly reproducible and comparable with the size of a single protein. The particles cover about 2% of the cell surface, which is similar to that expected for molecular conductors responsible for electron transfer through the bacterium cell wall. We find that G. sulfurreducens filaments ("bacterial molecular wires") also contain Fe atoms in their bundles. We observe that the bacterium enable changing the distance between the Fe-containing bundles in the filaments from separated to attached (the latter is needed for the efficient electron transfer between the Fe-containing particles), depending on the bacterium metabolic activity and attachment to extracellular substrates. These results are consistent with the recently published research about the role of Fe atoms in protein molecular conductance ( Phys. Chem. Chem. Phys. , 2018 , 20 , 14072 - 14081 ) and show what type of Fe-containing particles are involved in the bacterial extracellular communication. They can be used for the design and construction of artificial biomolecular wires and bioinorganic interfaces.
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Affiliation(s)
- Nikolai Lebedev
- Center for Bio/Molecular Science and Engineering , U.S. Naval Research Laboratory , Washington , DC 20375 , United States
| | - Rhonda M Stroud
- Materials Science and Technology Division , U.S. Naval Research Laboratory , Washington , DC 20375 , United States
| | - Matthew D Yates
- Center for Bio/Molecular Science and Engineering , U.S. Naval Research Laboratory , Washington , DC 20375 , United States
| | - Leonard Martin Tender
- Center for Bio/Molecular Science and Engineering , U.S. Naval Research Laboratory , Washington , DC 20375 , United States
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13
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Stöckl M, Teubner NC, Holtmann D, Mangold KM, Sand W. Extracellular Polymeric Substances from Geobacter sulfurreducens Biofilms in Microbial Fuel Cells. ACS APPLIED MATERIALS & INTERFACES 2019; 11:8961-8968. [PMID: 30730701 DOI: 10.1021/acsami.8b14340] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Bioelectrochemical systems (BESs) are hybrid systems using electroactive bacteria and solid electrodes, which serve as electron donor or acceptor for microorganisms. When forming a biofilm on the electrode, bacteria secrete extracellular polymeric substances (EPSs). However, EPS excretion of electroactive biofilms in BES has been rarely studied so far. Consequently, the aim of this study is to develop a routine including the electrochemical cultivation, biofilm harvesting, fractionation, and biochemical analysis of the EPS secreted by Geobacter sulfurreducens under electroactive conditions. G. sulfurreducens was cultivated in microbial fuel cell mode on graphite-based electrodes polarized to +400 mV versus Ag/AgCl for 8 d. A maximum current density of 172 ± 29 μA cm-2 was reached after 7 d. The EPS secreted from the biofilms were harvested and fractioned into soluble, loosely bound, and tightly bound EPS and biochemically analyzed. Electroactive cultures secreted significantly more EPSs compared to cells grown under standard heterotrophic conditions (fumarate respiration). With 116 pg per cell, the highest amount of EPSs was measured for the soluble EPS fraction of G. sulfurreducens using anodic respiration, followed by the tightly bound (18 pg cell-1) and loosely bound (11 pg cell-1) fractions of the EPS. Proteins were found to dominate all EPS fractions of the biofilms grown under electrochemical conditions. To the best of the authors' knowledge, these experiments are the first approach toward a complete analysis of the main EPS components of G. sulfurreducens under anode-respiring conditions.
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Affiliation(s)
| | | | | | | | - Wolfgang Sand
- Biofilm Centre , University of Duisburg-Essen , Universitätsstr. 5 , 45141 Essen , Germany
- College of Environmental Science and Engineering , Donghua University , Shanghai 201620 , China
- Technical Universtiy and Mining Academy , 09599 Freiberg , Germany
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14
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On-Line Raman Spectroscopic Study of Cytochromes' Redox State of Biofilms in Microbial Fuel Cells. Molecules 2019; 24:molecules24030646. [PMID: 30759821 PMCID: PMC6384720 DOI: 10.3390/molecules24030646] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Revised: 02/07/2019] [Accepted: 02/09/2019] [Indexed: 11/17/2022] Open
Abstract
Bio-electrochemical systems such as microbial fuel cells and microbial electrosynthesis cells depend on efficient electron transfer between the microorganisms and the electrodes. Understanding the mechanisms and dynamics of the electron transfer is important in order to design more efficient reactors, as well as modifying microorganisms for enhanced electricity production. Geobacter are well known for their ability to form thick biofilms and transfer electrons to the surfaces of electrodes. Currently, there are not many “on-line” systems for monitoring the activity of the biofilm and the electron transfer process without harming the biofilm. Raman microscopy was shown to be capable of providing biochemical information, i.e., the redox state of C-type cytochromes, which is integral to external electron transfer, without harming the biofilm. In the current study, a custom 3D printed flow-through cuvette was used in order to analyze the oxidation state of the C-type cytochromes of suspended cultures of three Geobacter sulfurreducens strains (PCA, KN400 and ΔpilA). It was found that the oxidation state is a good indicator of the metabolic state of the cells. Furthermore, an anaerobic fluidic system enabling in situ Raman measurements was designed and applied successfully to monitor and characterize G. sulfurreducens biofilms during electricity generation, for both a wild strain, PCA, and a mutant, ΔS. The cytochrome redox state, monitored by the Raman peak areas, could be modulated by applying different poise voltages to the electrodes. This also correlated with the modulation of current transferred from the cytochromes to the electrode. The Raman peak area changed in a predictable and reversible manner, indicating that the system could be used for analyzing the oxidation state of the proteins responsible for the electron transfer process and the kinetics thereof in-situ.
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15
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Li D, Li J, Liu D, Ma X, Cheng L, Li W, Qian C, Mu Y, Yu H. Potential regulates metabolism and extracellular respiration of electroactiveGeobacterbiofilm. Biotechnol Bioeng 2019; 116:961-971. [DOI: 10.1002/bit.26928] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 11/26/2018] [Accepted: 01/17/2019] [Indexed: 01/02/2023]
Affiliation(s)
- Dao‐Bo Li
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Jie Li
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Dong‐Feng Liu
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Xin Ma
- School of Life Sciences, University of Science and Technology of ChinaHefei China
| | - Lei Cheng
- School of Life Sciences, University of Science and Technology of ChinaHefei China
| | - Wen‐Wei Li
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Chen Qian
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Yang Mu
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Han‐Qing Yu
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
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16
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Golden J, Yates MD, Halsted M, Tender L. Application of electrochemical surface plasmon resonance (ESPR) to the study of electroactive microbial biofilms. Phys Chem Chem Phys 2018; 20:25648-25656. [PMID: 30289415 DOI: 10.1039/c8cp03898h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Electrochemical surface plasmon resonance (ESPR) monitors faradaic processes optically by the change in refractive index that occurs with a change in redox state at the electrode surface. Here we apply ESPR to investigate the anode-grown Geobacter sulfurreducens biofilm (GSB), a model system used to study electroactive microbial biofilms (EABFs) which perform electrochemical reactions using electrodes as metabolic electron acceptors or donors. A substantial body of evidence indicates that electron transfer reactions among hemes of c-type cytochromes (c-Cyt) play major roles in the extracellular electron transfer (EET) pathways that connect intracellular metabolic processes of cells in an EABF to the electrode surface. The results reported here reveal that when the potential of the electrode is changed from relatively oxidizing (0.40 V vs. SHE) to reducing (-0.55 V vs. SHE) and then back to oxidizing, 70% of c-Cyt residing closest to the biofilm/electrode (within hundreds of nm from the electrode surface) appear to remain trapped in the reduced state, requiring as long as 12 hours to be re-oxidized. c-Cyt storing electrons cannot contribute to EET, yet turnover current resulting from cellular oxidation of acetate coupled with EET to the electrode surface is unaffected. This suggests that a relatively small fraction of c-Cyt residing closest to the biofilm/electrode interface is involved in EET while the majority store electrons. The results also reveal that biomass density at the biofilm/electrode interface increases rapidly during lag phase, reaching its maximum value at the onset of exponential biofilm growth when turnover current begins to rapidly increase.
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Affiliation(s)
- Joel Golden
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington DC, 20375, USA.
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17
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Lebedev N, Yates MD, Griva I, Tender LM. Internal Redox Polarity of an Individual G. sulfurreducens Bacterial Cell Attached to an Inorganic Substrate. Chemphyschem 2018; 19:1820-1829. [PMID: 29873443 DOI: 10.1002/cphc.201800289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Indexed: 11/09/2022]
Abstract
Bacterial cell polarity is an internal asymmetric distribution of subcellular components, including proteins, lipids, and other molecules that correlates with the cell ability to sense energy and metabolite sources, chemical signals, quorum signals, toxins, and movement in the desired directions. This ability also plays central role in cell attachment to various surfaces and biofilm formation. Mechanisms and factors controlling formation of this cell internal asymmetry are not completely understood. As a step in this direction, in the present work, we develop an approach for analyzing how information about inorganic substrate can be non-genetically coded inside an individual bacterial cell. As a model system, we use G. sulfurreducens cells attached to an inorganic mineral, mica. The approach utilizes confocal Raman microscopy, Gaussian deconvolution, and Principal Component Analysis (PCA) and allows for quick label-free identification of the molecular signature of cytochrome intracellular location and the cell to substrate binding down to the level of individual bacterial cells. Our results describe a spectroscopic signature of cell adhesion and how the information about cell adhesion can be coded inside individual bacterial cells.
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Affiliation(s)
- Nikolai Lebedev
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, Washington, DC, 20375, USA
| | - Matthew D Yates
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, Washington, DC, 20375, USA
| | - Igor Griva
- Department of Mathematical Sciences and Center of Simulation and Modeling, George Mason University, Fairfax, VA, 22030, USA
| | - Leonard M Tender
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, Washington, DC, 20375, USA
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18
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Abstract
Electron transport within living cells is essential for energy conservation in all respiring and photosynthetic organisms. While a few bacteria transport electrons over micrometer distances to their surroundings, filaments of cable bacteria are hypothesized to conduct electric currents over centimeter distances. We used resonance Raman microscopy to analyze cytochrome redox states in living cable bacteria. Cable-bacteria filaments were placed in microscope chambers with sulfide as electron source and oxygen as electron sink at opposite ends. Along individual filaments a gradient in cytochrome redox potential was detected, which immediately broke down upon removal of oxygen or laser cutting of the filaments. Without access to oxygen, a rapid shift toward more reduced cytochromes was observed, as electrons were no longer drained from the filament but accumulated in the cellular cytochromes. These results provide direct evidence for long-distance electron transport in living multicellular bacteria.
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19
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Yates MD, Barr Engel S, Eddie BJ, Lebedev N, Malanoski AP, Tender LM. Redox-gradient driven electron transport in a mixed community anodic biofilm. FEMS Microbiol Ecol 2018; 94:4990946. [DOI: 10.1093/femsec/fiy081] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Accepted: 05/01/2018] [Indexed: 11/13/2022] Open
Affiliation(s)
- Matthew D Yates
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, 4555 Overlook Ave SW, Washington, DC, 20375, USA
| | - Sarah Barr Engel
- Department of Civil and Environmental Engineering, Cornell University, 220 Hollister Hall, Ithaca, NY, 14853, USA
| | - Brian J Eddie
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, 4555 Overlook Ave SW, Washington, DC, 20375, USA
| | - Nikolai Lebedev
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, 4555 Overlook Ave SW, Washington, DC, 20375, USA
| | - Anthony P Malanoski
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, 4555 Overlook Ave SW, Washington, DC, 20375, USA
| | - Leonard M Tender
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, 4555 Overlook Ave SW, Washington, DC, 20375, USA
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20
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Lee HS. Electrokinetic analyses in biofilm anodes: Ohmic conduction of extracellular electron transfer. BIORESOURCE TECHNOLOGY 2018; 256:509-514. [PMID: 29478785 DOI: 10.1016/j.biortech.2018.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 01/31/2018] [Accepted: 02/01/2018] [Indexed: 06/08/2023]
Abstract
This review explores electron transfer kinetics from an electron donor to the anode in electrically conductive biofilm anodes. Intracellular electron transfer (IET) from the donor to the anode is well described with the Monod equation. In comparison, mechanisms of extracellular electron transfer (EET) conduction are unclear yet, complicating EET kinetics. However, in biofilm anodes where potential gradient to saturated current density is less than ∼300 mV, Ohmic conduction successfully describe conductive EET mainly with biofilm conductivity (Kbio) and biofilm thickness (Lf). High Kbio essential for production of high current density is found in Geobacter pure or enriched biofilm anodes, but other exoelectrogens could make biofilms electrically conductive. IET is rate-limiting for current density in conductive biofilms, and biofilm density of active exoelectrogens and Lf are operating parameters that can be optimized further to improve current density.
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Affiliation(s)
- Hyung-Sool Lee
- Civil and Environmental Engineering, University of Waterloo, 200 University Avenue West Waterloo, Ontario N2L 3G, Canada.
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21
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Yates MD, Eddie BJ, Lebedev N, Kotloski NJ, Strycharz-Glaven SM, Tender LM. On the relationship between long-distance and heterogeneous electron transfer in electrode-grown Geobacter sulfurreducens biofilms. Bioelectrochemistry 2018; 119:111-118. [DOI: 10.1016/j.bioelechem.2017.09.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2017] [Revised: 09/12/2017] [Accepted: 09/14/2017] [Indexed: 02/05/2023]
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22
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Saratale RG, Saratale GD, Pugazhendhi A, Zhen G, Kumar G, Kadier A, Sivagurunathan P. Microbiome involved in microbial electrochemical systems (MESs): A review. CHEMOSPHERE 2017; 177:176-188. [PMID: 28288426 DOI: 10.1016/j.chemosphere.2017.02.143] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2016] [Revised: 02/22/2017] [Accepted: 02/27/2017] [Indexed: 06/06/2023]
Abstract
Microbial electrochemical systems (MESs) are an attracting technology for the disposal of wastewater treatment and simultaneous energy production. In MESs, at the anode microorganisms through the catalytic activity generates electrons that can be converted into electricity or other valuable chemical compounds. Microorganisms those having ability to donate and accept electrons to and from anode and cathode electrodes, respectively are recognized as 'exoelectrogens'. In the MESs, it renders an important function for its performance. In the present mini-review, we have discussed the role of microbiome including pure culture, enriched culture and mixed culture in different BESs application. The effects of operational and biological factors on microbiome development have been discussed. Further discussion about the molecular techniques for the evaluation of microbial community analysis is addressed. In addition different electrochemical techniques for extracellular electron transfer (EET) mechanism of electroactive biofilms have been discussed. This review highlights the importance of microbiome in the development of MESs, effective operational factors for exo-electrogens activities as well their key challenges and future technological aspects are also briefly discussed.
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Affiliation(s)
- Rijuta Ganesh Saratale
- Research Institute of Biotechnology and Medical Converged Science, Dongguk University- Seoul, Ilsandong-gu, Goyang-si, Gyeonggi-do, 10326, Republic of Korea
| | - Ganesh Dattatraya Saratale
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Ilsandong-gu, Goyang-si, Gyeonggi-do, 10326, Republic of Korea
| | - Arivalagan Pugazhendhi
- Department of Environmental Engineering, Daegu University, Jillyang, Gyeongsan, Gyeongbuk, Republic of Korea
| | - Guangyin Zhen
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Dongchuan Rd. 500, Shanghai 200241, China
| | - Gopalakrishnan Kumar
- Department of Environmental Engineering, Daegu University, Jillyang, Gyeongsan, Gyeongbuk, Republic of Korea
| | - Abudukeremu Kadier
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, National University of Malaysia (UKM), 43600 UKM Bangi, Selangor, Malaysia
| | - Periyasamy Sivagurunathan
- Green Energy Technology Research Group, Ton Duc Thang University, Ho Chi Minh City, Viet Nam; Faculty of Environment and Labour Safety, Ton Duc Thang University, Ho Chi Minh City, Viet Nam.
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23
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Robuschi L, Tomba JP, Busalmen JP. Proving Geobacter biofilm connectivity with confocal Raman microscopy. J Electroanal Chem (Lausanne) 2017. [DOI: 10.1016/j.jelechem.2016.11.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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24
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Raman microspectroscopy, surface-enhanced Raman scattering microspectroscopy, and stable-isotope Raman microspectroscopy for biofilm characterization. Anal Bioanal Chem 2017; 409:4353-4375. [DOI: 10.1007/s00216-017-0303-0] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Revised: 01/31/2017] [Accepted: 03/08/2017] [Indexed: 12/27/2022]
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25
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Zhang X, Philips J, Roume H, Guo K, Rabaey K, Prévoteau A. Rapid and Quantitative Assessment of Redox Conduction Across Electroactive Biofilms by using Double Potential Step Chronoamperometry. ChemElectroChem 2017. [DOI: 10.1002/celc.201600853] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Xu Zhang
- Center for Microbial Ecology and Technology (cmet); Ghent University; Coupure Links 653 9000 Ghent Belgium
| | - Jo Philips
- Center for Microbial Ecology and Technology (cmet); Ghent University; Coupure Links 653 9000 Ghent Belgium
| | - Hugo Roume
- Center for Microbial Ecology and Technology (cmet); Ghent University; Coupure Links 653 9000 Ghent Belgium
- MetaGenoPolis; INRA; Université Paris-Saclay Domaine de Vilvert; Bâtiment 325 78350 Jouy-en-Josas France
| | - Kun Guo
- Center for Microbial Ecology and Technology (cmet); Ghent University; Coupure Links 653 9000 Ghent Belgium
| | - Korneel Rabaey
- Center for Microbial Ecology and Technology (cmet); Ghent University; Coupure Links 653 9000 Ghent Belgium
| | - Antonin Prévoteau
- Center for Microbial Ecology and Technology (cmet); Ghent University; Coupure Links 653 9000 Ghent Belgium
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26
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Lee HS, Dhar BR, An J, Rittmann BE, Ryu H, Santo Domingo JW, Ren H, Chae J. The Roles of Biofilm Conductivity and Donor Substrate Kinetics in a Mixed-Culture Biofilm Anode. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016; 50:12799-12807. [PMID: 27797183 PMCID: PMC7388032 DOI: 10.1021/acs.est.6b04168] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We experimentally assessed the kinetics and thermodynamics of electron transfer (ET) from the donor substrate (acetate) to the anode for a mixed-culture biofilm anode. We interpreted the results with a modified biofilm-conduction model consisting of three ET steps in series: (1) intracellular ET, (2) non-Ohmic extracellular ET (EET) from an outer membrane protein to an extracellular cofactor (EC), and (3) ET from the EC to the anode by Ohmic-conduction in the biofilm matrix. The steady-state current density was 0.82 ± 0.03 A/m2 in a miniature microbial electrochemical cell operated at fixed anode potential of -0.15 V versus the standard hydrogen electrode. Illumina 16S-rDNA and -rRNA sequences showed that the Geobacter genus was less than 30% of the community of the biofilm anode. Biofilm conductivity was high at 2.44 ± 0.42 mS/cm, indicating that the maximum current density could be as high as 270 A/m2 if only Ohmic-conduction EET was limiting. Due to the high biofilm conductivity, the maximum energy loss for Ohmic-conduction EET was negligible, 0.085 mV. The energy loss in the second ET step also was small, only 20 mV, and the potential for the EC involved in the second ET was -0.15 V, a value documenting that >99% of the EC was in the oxidized state. Monod kinetics for utilization of acetate were relatively slow, and at least 87% of the energy loss was in the intracellular step. Thus, intracellular ET was the main kinetic and thermodynamic bottleneck to ET from donor substrate to the anode for a highly conductive biofilm.
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Affiliation(s)
- Hyung-Sool Lee
- Department of Civil and Environmental Engineering, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L3G1, Canada
| | - Bipro Ranjan Dhar
- Department of Civil and Environmental Engineering, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L3G1, Canada
| | - Junyeong An
- Department of Civil and Environmental Engineering, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L3G1, Canada
| | - Bruce E. Rittmann
- Swette Center for Environmental Biotechnology, The Biodesign Institute at Arizona State University, P.O. Box 875701, Tempe, Arizona 85287-5701, United States
| | - Hodon Ryu
- National Risk Management Research Laboratory, U.S. Environmental Protection Agency, 26 W. Martin Luther King Drive, Cincinnati, Ohio 45268, United States
| | - Jorge W. Santo Domingo
- National Risk Management Research Laboratory, U.S. Environmental Protection Agency, 26 W. Martin Luther King Drive, Cincinnati, Ohio 45268, United States
| | - Hao Ren
- School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, United States
| | - Junseok Chae
- School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, United States
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27
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Membrane Separated Flow Cell for Parallelized Electrochemical Impedance Spectroscopy and Confocal Laser Scanning Microscopy to Characterize Electro-Active Microorganisms. Electrochim Acta 2016. [DOI: 10.1016/j.electacta.2016.10.057] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Anodic biofilms as the interphase for electroactive bacterial growth on carbon veil. Biointerphases 2016; 11:031013. [PMID: 27609094 DOI: 10.1116/1.4962264] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The structure and activity of electrochemically active biofilms (EABs) are usually investigated on flat electrodes. However, real world applications such as wastewater treatment and bioelectrosynthesis require tridimensional electrodes to increase surface area and facilitate EAB attachment. The structure and activity of thick EABs grown on high surface area electrodes are difficult to characterize with electrochemical and microscopy methods. Here, the authors adopt a stacked electrode configuration to simulate the high surface and the tridimensional structure of an electrode for large-scale EAB applications. Each layer of the stacked electrode is independently characterized using confocal laser scanning microscopy (CLSM) and digital image processing. Shewanella oneidensis MR-1 biofilm on stacked carbon veil electrodes is grown under constant oxidative potentials (0, +200, and +400 mV versus Ag/AgCl) until a stable current output is obtained. The textural, aerial, and volumetric parameters extracted from CLSM images allow tracking of the evolution of morphological properties within the stacked electrodes. The electrode layers facing the bulk liquid show higher biovolumes compared with the inner layer of the stack. The electrochemical performance of S. oneidensis MR-1 is directly linked to the overall biofilm volume as well as connectivity between cell clusters.
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29
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Lebedev N, Griva I, Dressick WJ, Phelps J, Johnson JE, Meshcheriakova Y, Lomonossoff GP, Soto CM. A virus-based nanoplasmonic structure as a surface-enhanced Raman biosensor. Biosens Bioelectron 2016; 77:306-14. [DOI: 10.1016/j.bios.2015.09.032] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Revised: 09/10/2015] [Accepted: 09/13/2015] [Indexed: 02/05/2023]
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30
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Virdis B, Millo D, Donose BC, Lu Y, Batstone DJ, Krömer JO. Analysis of electron transfer dynamics in mixed community electroactive microbial biofilms. RSC Adv 2016. [DOI: 10.1039/c5ra15676a] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Electrochemically active microbial biofilms are capable to produce electric current when grown onto electrodes. This work investigates the dynamics of electron transfer inside the biofilm as well as at the biofilm/electrode interface.
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Affiliation(s)
- Bernardino Virdis
- The University of Queensland
- Centre for Microbial Electrochemical Systems (CEMES)
- Brisbane
- Australia
- The University of Queensland
| | - Diego Millo
- Biomolecular Spectroscopy/LaserLaB Amsterdam
- Vrije Universiteit Amsterdam
- NL-1081 HV Amsterdam
- The Netherlands
| | - Bogdan C. Donose
- The University of Queensland
- Centre for Microbial Electrochemical Systems (CEMES)
- Brisbane
- Australia
- The University of Queensland
| | - Yang Lu
- The University of Queensland
- Advanced Water Management Centre (AWMC)
- Brisbane
- Australia
| | - Damien J. Batstone
- The University of Queensland
- Advanced Water Management Centre (AWMC)
- Brisbane
- Australia
| | - Jens O. Krömer
- The University of Queensland
- Centre for Microbial Electrochemical Systems (CEMES)
- Brisbane
- Australia
- The University of Queensland
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In Situ Analysis of a Silver Nanoparticle-Precipitating Shewanella Biofilm by Surface Enhanced Confocal Raman Microscopy. PLoS One 2015; 10:e0145871. [PMID: 26709923 PMCID: PMC4692441 DOI: 10.1371/journal.pone.0145871] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Accepted: 12/09/2015] [Indexed: 11/19/2022] Open
Abstract
Shewanella oneidensis MR-1 is an electroactive bacterium, capable of reducing extracellular insoluble electron acceptors, making it important for both nutrient cycling in nature and microbial electrochemical technologies, such as microbial fuel cells and microbial electrosynthesis. When allowed to anaerobically colonize an Ag/AgCl solid interface, S. oneidensis has precipitated silver nanoparticles (AgNp), thus providing the means for a surface enhanced confocal Raman microscopy (SECRaM) investigation of its biofilm. The result is the in-situ chemical mapping of the biofilm as it developed over time, where the distribution of cytochromes, reduced and oxidized flavins, polysaccharides and phosphate in the undisturbed biofilm is monitored. Utilizing AgNp bio-produced by the bacteria colonizing the Ag/AgCl interface, we could perform SECRaM while avoiding the use of a patterned or roughened support or the introduction of noble metal salts and reducing agents. This new method will allow a spatially and temporally resolved chemical investigation not only of Shewanella biofilms at an insoluble electron acceptor, but also of other noble metal nanoparticle-precipitating bacteria in laboratory cultures or in complex microbial communities in their natural habitats.
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Yates MD, Golden JP, Roy J, Strycharz-Glaven SM, Tsoi S, Erickson JS, El-Naggar MY, Calabrese Barton S, Tender LM. Thermally activated long range electron transport in living biofilms. Phys Chem Chem Phys 2015; 17:32564-70. [PMID: 26611733 DOI: 10.1039/c5cp05152e] [Citation(s) in RCA: 77] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Microbial biofilms grown utilizing electrodes as metabolic electron acceptors or donors are a new class of biomaterials with distinct electronic properties. Here we report that electron transport through living electrode-grown Geobacter sulfurreducens biofilms is a thermally activated process with incoherent redox conductivity. The temperature dependency of this process is consistent with electron-transfer reactions involving hemes of c-type cytochromes known to play important roles in G. sulfurreducens extracellular electron transport. While incoherent redox conductivity is ubiquitous in biological systems at molecular-length scales, it is unprecedented over distances it appears to occur through living G. sulfurreducens biofilms, which can exceed 100 microns in thickness.
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Affiliation(s)
- Matthew D Yates
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC 20375, USA.
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Yoho RA, Popat SC, Torres CI. Dynamic potential-dependent electron transport pathway shifts in anode biofilms of Geobacter sulfurreducens. CHEMSUSCHEM 2014; 7:3413-3419. [PMID: 25351488 DOI: 10.1002/cssc.201402589] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2014] [Revised: 08/31/2014] [Indexed: 06/04/2023]
Abstract
Biofilms of the anode-respiring bacterium Geobacter sulfurreducens (G. sulfurreducens) demonstrate dynamic potential-dependent changes between two electron transport pathways that are used selectively depending on the anode potential. Electrochemical impedance spectroscopy (EIS) measurements suggest that these pathways (both n=1), with midpoint potentials of -0.155 (± 0.005) and -0.095 (± 0.003) V versus standard hydrogen electrode, are not additive within the biofilm, but are preferentially used depending on the anode potential. Potential step voltammetry and cyclic voltammetry (CV) confirmed rapid changes between the two pathways in minutes when the anode potential is changed. We confirm that the electrochemical response observed in a slow-scan-rate CV (∼1 mV s(-1) ) is often composed of at least the two pathways characterized. Thus, beyond understanding the electron transport pathways in G. sulfurreducens, this study also has implications on the interpretation of previously collected and future potential-dependent datasets.
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Affiliation(s)
- Rachel A Yoho
- Swette Center for Environmental Biotechnology, Biodesign Institute, Arizona State University, 1001 S McAllister Avenue, Tempe, AZ 85287 (USA); School of Biological and Health Systems Engineering, Arizona State University, P.O. Box 879709, Tempe, AZ 85287 (USA).
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Aracic S, Semenec L, Franks AE. Investigating microbial activities of electrode-associated microorganisms in real-time. Front Microbiol 2014; 5:663. [PMID: 25506343 PMCID: PMC4246885 DOI: 10.3389/fmicb.2014.00663] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 11/15/2014] [Indexed: 01/28/2023] Open
Abstract
Electrode-associated microbial biofilms are essential to the function of bioelectrochemical systems (BESs). These systems exist in a number of different configurations but all rely on electroactive microorganisms utilizing an electrode as either an electron acceptor or an electron donor to catalyze biological processes. Investigations of the structure and function of electrode-associated biofilms are critical to further the understanding of how microbial communities are able to reduce and oxidize electrodes. The community structure of electrode-reducing biofilms is diverse and often dominated by Geobacter spp. whereas electrode-oxidizing biofilms are often dominated by other microorganisms. The application of a wide range of tools, such as high-throughput sequencing and metagenomic data analyses, provide insight into the structure and possible function of microbial communities on electrode surfaces. However, the development and application of techniques that monitor gene expression profiles in real-time are required for a more definite spatial and temporal understanding of the diversity and biological activities of these dynamic communities. This mini review summarizes the key gene expression techniques used in BESs research, which have led to a better understanding of population dynamics, cell–cell communication and molecule-surface interactions in mixed and pure BES communities.
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Affiliation(s)
- Sanja Aracic
- Applied and Environmental Microbiology Laboratory, Department of Microbiology, La Trobe University , Melbourne, VIC, Australia
| | - Lucie Semenec
- Applied and Environmental Microbiology Laboratory, Department of Microbiology, La Trobe University , Melbourne, VIC, Australia
| | - Ashley E Franks
- Applied and Environmental Microbiology Laboratory, Department of Microbiology, La Trobe University , Melbourne, VIC, Australia
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Strycharz-Glaven SM, Roy J, Boyd D, Snider R, Erickson JS, Tender LM. Electron Transport through Early Exponential-Phase Anode-GrownGeobacter sulfurreducensBiofilms. ChemElectroChem 2014. [DOI: 10.1002/celc.201402168] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Babauta JT, Beasley CA, Beyenal H. Investigation of Electron Transfer by Geobacter sulfurreducens Biofilms by using an Electrochemical Quartz Crystal Microbalance. ChemElectroChem 2014; 1:2007-2016. [PMID: 27525205 PMCID: PMC4964883 DOI: 10.1002/celc.201402127] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2014] [Revised: 06/17/2014] [Indexed: 01/05/2023]
Abstract
Both the short- and long-term electron-transfer processes of electrode-respiring Geobacter sulfurreducens biofilms are demonstrated by using an electrochemical quartz crystal microbalance (QCM). The QCM monitors the frequency shift from the initial resonant frequency (background) in real time, while the current increases, because of biofilm growth. In the short term, the frequency shift is linear with respect to current for the biofilm. In long-term biofilm growth up to the exponential phase, a second linear region of frequency shift with respect to current is observed. In addition to the frequency shift response at constant polarization, the frequency shift response is coupled to cyclic voltammetry experiments. During cyclic voltammetry, a reproducible, negative increase in frequency shift is observed at oxidizing potentials. The results suggest that a QCM can be used in applications in which it is useful to find the most efficient current producer.
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Affiliation(s)
- Jerome T Babauta
- The Gene and Linda Voiland School of Chemical Engineering and Bioengineering PO Box 646515, Washington State University, Pullman, WA 99164-6515 (USA) E-mail:
| | | | - Haluk Beyenal
- The Gene and Linda Voiland School of Chemical Engineering and Bioengineering PO Box 646515, Washington State University, Pullman, WA 99164-6515 (USA) E-mail:
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