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Manser S, Keck S, Vitacolonna M, Wuehler F, Rudolf R, Raedle M. Innovative Imaging Techniques: A Conceptual Exploration of Multi-Modal Raman Light Sheet Microscopy. MICROMACHINES 2023; 14:1739. [PMID: 37763902 PMCID: PMC10536344 DOI: 10.3390/mi14091739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 09/01/2023] [Accepted: 09/02/2023] [Indexed: 09/29/2023]
Abstract
Advances in imaging of microscopic structures are supported and complemented by adaptive visualization tools. These tools enable researchers to precisely capture and analyze complex three-dimensional structures of different kinds such as crystals, microchannels and electronic or biological material. In this contribution, we focus on 3D cell cultures. The new possibilities can play a particularly important role in biomedical research, especially here in the study of 3D cell cultures such as spheroids in the field of histology. By applying advanced imaging techniques, detailed information about the spatial arrangement and interactions between cells can be obtained. These insights help to gain a better understanding of cellular organization and function and have potential implications for the development of new therapies and drugs. In this context, this study presents a multi-modal light sheet microscope designed for the detection of elastic and inelastic light scattering, particularly Rayleigh scattering as well as the Stokes Raman effect and fluorescence for imaging purposes. By combining multiple modalities and stitching their individual results, three-dimensional objects are created combining complementary information for greater insight into spatial and molecular information. The individual components of the microscope are specifically selected to this end. Both Rayleigh and Stokes Raman scattering are inherent molecule properties and accordingly facilitate marker-free imaging. Consequently, altering influences on the sample by external factors are minimized. Furthermore, this article will give an outlook on possible future applications of the prototype microscope.
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Affiliation(s)
| | | | | | | | | | - Matthias Raedle
- Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), University of Applied Science Mannheim, 68163 Mannheim, Germany
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Pajić T, Todorović NV, Živić M, Nikolić SN, Rabasović MD, Clayton AHA, Krmpot AJ. Label-free third harmonic generation imaging and quantification of lipid droplets in live filamentous fungi. Sci Rep 2022; 12:18760. [PMID: 36335164 PMCID: PMC9637149 DOI: 10.1038/s41598-022-23502-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 11/01/2022] [Indexed: 11/07/2022] Open
Abstract
We report the utilization of Third-Harmonic Generation microscopy for label-free live cell imaging of lipid droplets in the hypha of filamentous fungus Phycomyces blakesleeanus. THG microscopy images showed bright spherical features dispersed throughout the hypha cytoplasm in control conditions and a transient increase in the number of bright features after complete nitrogen starvation. Colocalization analysis of THG and lipid-counterstained images disclosed that the cytoplasmic particles were lipid droplets. Particle Size Analysis and Image Correlation Spectroscopy were used to quantify the number density and size of lipid droplets. The two analysis methods both revealed an increase from 16 × 10-3 to 23 × 10-3 lipid droplets/µm2 after nitrogen starvation and a decrease in the average size of the droplets (range: 0.5-0.8 µm diameter). In conclusion, THG imaging, followed by PSA and ICS, can be reliably used for filamentous fungi for the in vivo quantification of lipid droplets without the need for labeling and/or fixation. In addition, it has been demonstrated that ICS is suitable for THG microscopy.
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Affiliation(s)
- Tanja Pajić
- grid.7149.b0000 0001 2166 9385Faculty of Biology, Institute of Physiology and Biochemistry, University of Belgrade, Studentski trg 16, Belgrade, 11158 Serbia
| | - Nataša V. Todorović
- grid.7149.b0000 0001 2166 9385Institute for Biological Research “Siniša Stanković”, University of Belgrade, National Institute of the Republic of Serbia, Bulevar Despota Stefana 142, Belgrade, 11000 Serbia
| | - Miroslav Živić
- grid.7149.b0000 0001 2166 9385Faculty of Biology, Institute of Physiology and Biochemistry, University of Belgrade, Studentski trg 16, Belgrade, 11158 Serbia
| | - Stanko N. Nikolić
- grid.7149.b0000 0001 2166 9385Institute of Physics Belgrade, University of Belgrade, National Institute of the Republic of Serbia, Pregrevica 118, Belgrade, 11080 Serbia
| | - Mihailo D. Rabasović
- grid.7149.b0000 0001 2166 9385Institute of Physics Belgrade, University of Belgrade, National Institute of the Republic of Serbia, Pregrevica 118, Belgrade, 11080 Serbia
| | - Andrew H. A. Clayton
- grid.1027.40000 0004 0409 2862Department of Physics and Astronomy, Optical Sciences Centre, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Melbourne, VIC 3122 Australia
| | - Aleksandar J. Krmpot
- grid.7149.b0000 0001 2166 9385Institute of Physics Belgrade, University of Belgrade, National Institute of the Republic of Serbia, Pregrevica 118, Belgrade, 11080 Serbia
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Rahman SU, Khalid M, Kayani SI, Tang K. The ameliorative effects of exogenous inoculation of Piriformospora indica on molecular, biochemical and physiological parameters of Artemisia annua L. under arsenic stress condition. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 206:111202. [PMID: 32889311 PMCID: PMC7646201 DOI: 10.1016/j.ecoenv.2020.111202] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Revised: 08/17/2020] [Accepted: 08/19/2020] [Indexed: 05/11/2023]
Abstract
Aim of the current study was to investigate the effect of exogenously inoculated root endophytic fungus, Piriformospora indica, on molecular, biochemical, morphological and physiological parameters of Artemisia annua L. treated with different concentrations (0, 50, 100 and 150 μmol/L) of arsenic (As) stress. As was significantly accumulated in the roots than shoots of P. indica-inoculated plants. As accumulation and immobilization in the roots is directly associated with the successful fungal colonization that restricts most of As as compared to the aerial parts. A total of 4.1, 11.2 and 25.6 mg/kg dry weight of As was accumulated in the roots of inoculated plants supplemented with 50, 100 and 150 μmol/L of As, respectively as shown by atomic absorption spectroscopy. P. indica showed significant tolerance in vitro to As toxicity even at high concentration. Furthermore, flavonoids, artemisinin and overall biomass were significantly increased in inoculated-stressed plants. Superoxide dismutase and peroxidase activities were increased 1.6 and 1.2 fold, respectively under 150 μmol/L stress in P. indica-colonized plants. Similar trend was followed by ascorbate peroxidase, catalase and glutathione reductase. Like that, phenolic acid and phenolic compounds showed a significant increase in colonized plants as compared to their respective control/un-colonize stressed plants. The real-time PCR revealed that transcriptional levels of artemisinin biosynthesis genes, isoprenoids, terpenes, flavonoids biosynthetic pathway genes and signal molecules were prominently enhanced in inoculated stressed plants than un-inoculated stressed plants.
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Affiliation(s)
- Saeed-Ur- Rahman
- Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Muhammad Khalid
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Sadaf-Ilyas Kayani
- Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Kexuan Tang
- Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
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Siddhanta S, Bhattacharjee S, Harrison SM, Scholz D, Barman I. Shedding Light on the Trehalose-Enabled Mucopermeation of Nanoparticles with Label-Free Raman Spectroscopy. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2019; 15:e1901679. [PMID: 31267720 PMCID: PMC6697627 DOI: 10.1002/smll.201901679] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 05/29/2019] [Indexed: 06/09/2023]
Abstract
Nanoparticle-based drug delivery systems have attracted significant interest owing to their promise as tunable platforms that offer improved intracellular release of cargo therapeutics. However, significant challenges remain in maintaining the physiological stability of the mucosal matrix due to the nanoparticle-induced reduction in the matrix diffusivity and promotion of mucin aggregation. Such aggregation also adversely impacts the permeability of the nanoparticles, and thus, diminishes the efficacy of nanoparticle-based formulations. Here, an entirely complementary approach is proposed to the existing nanoparticle functionalization methods to address these challenges by using trehalose, a naturally occurring disaccharide that offers exceptional protein stabilization. Plasmon-enhanced Raman spectroscopy and far-red fluorescence emission of the plasmonic silver nanoparticulate clusters are harnessed to create a unique dual-functional, aggregating, and imaging agent that obviates the need of an additional reporter to investigate mucus-nanoparticle interactions. These spectroscopy-based density mapping tools uncover the mechanism of mucus-nanoparticle interactions and establish the protective role of trehalose microenvironment in minimizing the nanoparticle aggregation. Thus, in contrast to the prevailing belief, these results demonstrate that nonfunctionalized nanoparticles may rapidly penetrate through mucus barriers, and by leveraging the bioprotectant attributes of trehalose, an in vivo milieu for efficient mucosal drug delivery can be generated.
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Affiliation(s)
- Soumik Siddhanta
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Sourav Bhattacharjee
- School of Veterinary Medicine, University College Dublin (UCD), Dublin 4, Ireland
| | - Sabine M Harrison
- School of Agriculture & Food Science, University College Dublin (UCD), Dublin 4, Ireland
| | - Dimitri Scholz
- Conway Institute of Biomolecular & Biomedical Research, University College Dublin (UCD), Dublin 4, Ireland
| | - Ishan Barman
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA
- Department of Oncology, The Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA
- Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA
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Aziz N, Faraz M, Sherwani MA, Fatma T, Prasad R. Illuminating the Anticancerous Efficacy of a New Fungal Chassis for Silver Nanoparticle Synthesis. Front Chem 2019; 7:65. [PMID: 30800654 PMCID: PMC6375905 DOI: 10.3389/fchem.2019.00065] [Citation(s) in RCA: 114] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Accepted: 01/23/2019] [Indexed: 01/16/2023] Open
Abstract
Biogenic silver nanoparticles (Ag NPs) have supple platforms designed for biomedical and therapeutic intervention. Utilization of Ag NPs are preferred in the field of biomedicines and material science research because of their antioxidant, antimicrobial, and anticancerous activity along with their eco-friendly, biocompatible, and cost-effective nature. Here we present a novel fungus Piriformospora indica as an excellent source for obtaining facile and reliable Ag NPs with a high degree of consistent morphology. We demonstrated their cytotoxic property, coupled with their intrinsic characteristic that make these biogenic nanoparticles suitable for the anticancerous activity. In vitro cytotoxicity of biologically synthesized Ag NPs (BSNPs) and chemically synthesized Ag NPs (SNPs) was screened on various cancer cell lines, such as Human breast adenocarcinoma (MCF-7), Human cervical carcinoma (HeLa), Human liver hepatocellular carcinoma (HepG2) cell lines and embryonic kidney cell line (HEK-293) as normal cell lines. The antiproliferative outcome revealed that the BSNPs exhibited significant cytotoxic activity against MCF-7 followed by HeLa and HepG2 cell lines as compared to SNPs. The blend of cytotoxic properties, together with green and cost-effective characteristics make up these biogenic nanoparticles for their potential applications in cancer nanomedicine and fabrication coating of ambulatory and non-ambulatory medical devices.
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Affiliation(s)
- Nafe Aziz
- Department of Biosciences, Jamia Millia Islamia, New Delhi, India
| | - Mohd Faraz
- Department of Physics, Indian Institute of Technology Delhi, Haus Khas, New Delhi, India
| | - Mohd Asif Sherwani
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
| | - Tasneem Fatma
- Department of Biosciences, Jamia Millia Islamia, New Delhi, India
| | - Ram Prasad
- School of Environmental Science and Engineering, Sun Yat-Sen University, Guangzhou, China.,Amity Institute of Microbial Technology, Amity University, Noida, India
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Bajaj R, Huang Y, Gebrechristos S, Mikolajczyk B, Brown H, Prasad R, Varma A, Bushley KE. Transcriptional responses of soybean roots to colonization with the root endophytic fungus Piriformospora indica reveals altered phenylpropanoid and secondary metabolism. Sci Rep 2018; 8:10227. [PMID: 29980739 PMCID: PMC6035220 DOI: 10.1038/s41598-018-26809-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Accepted: 05/15/2018] [Indexed: 12/31/2022] Open
Abstract
Piriformospora indica, a root endophytic fungus, has been shown to enhance biomass production and confer tolerance to various abiotic and biotic stresses in many plant hosts. A growth chamber experiment of soybean (Glycine max) colonized by P. indica compared to uninoculated control plants showed that the fungus significantly increased shoot dry weight, nutrient content, and rhizobial biomass. RNA-Seq analyses of root tissue showed upregulation of 61 genes and downregulation of 238 genes in colonized plants. Gene Ontology (GO) enrichment analyses demonstrated that upregulated genes were most significantly enriched in GO categories related to lignin biosynthesis and regulation of iron transport and metabolism but also mapped to categories of nutrient acquisition, hormone signaling, and response to drought stress. Metabolic pathway analysis revealed upregulation of genes within the phenylpropanoid and derivative pathways such as biosynthesis of monolignol subunits, flavonoids and flavonols (luteolin and quercetin), and iron scavenging siderophores. Highly enriched downregulated GO categories included heat shock proteins involved in response to heat, high-light intensity, hydrogen peroxide, and several related to plant defense. Overall, these results suggest that soybean maintains an association with this root endosymbiotic fungus that improves plant growth and nutrient acquisition, modulates abiotic stress, and promotes synergistic interactions with rhizobia.
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Affiliation(s)
- Ruchika Bajaj
- Department of Plant Biology, University of Minnesota, Saint Paul, MN, USA
- Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida, India
| | - Yinyin Huang
- Department of Plant Biology, University of Minnesota, Saint Paul, MN, USA
| | - Sebhat Gebrechristos
- Master of Biological Sciences Program, University of Minnesota, Saint Paul, MN, USA
| | - Brian Mikolajczyk
- Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA
| | - Heather Brown
- Department of Chemistry, University of Minnesota, Minneapolis, MN, USA
| | - Ram Prasad
- Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida, India
| | - Ajit Varma
- Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida, India
| | - Kathryn E Bushley
- Department of Plant Biology, University of Minnesota, Saint Paul, MN, USA.
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Singhal U, Khanuja M, Prasad R, Varma A. Impact of Synergistic Association of ZnO-Nanorods and Symbiotic Fungus Piriformospora indica DSM 11827 on Brassica oleracea var. botrytis (Broccoli). Front Microbiol 2017; 8:1909. [PMID: 29089926 PMCID: PMC5651031 DOI: 10.3389/fmicb.2017.01909] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2017] [Accepted: 09/19/2017] [Indexed: 01/15/2023] Open
Abstract
In the present work, novel nanotool called 'nano-embedded fungus' formed by impact of synergistic association of ZnO-nanorods and fungus Piriformospora indica DSM 11827, for growth of Brassica oleracea var. botrytis (Broccoli) is reported. ZnO-nanorods were synthesized by mechanical assisted thermal decomposition process and characterized by scanning electron microscopy (SEM) for morphology, X-ray diffraction for structural studies and UV-vis absorption spectroscopy for band gap determination. Nanoembedded fungus is prepared by optimizing ZnO-nanorods concentration (500 ppm) which resulted in the increased biomass of P. indica, as confirmed by dry weight method, spore count, spread plate and microscopy techniques viz. SEM and confocal microscopy. Enhancement in B. oleracea var. botrytis is reported on treatment with nanoembedded fungus. According to the authors, this is the first holistic study focusing on the impact of ZnO-nanorods in the enhancement of fungal symbiont for enhanced biomass productivity of B. oleracea plant.
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Affiliation(s)
- Uma Singhal
- Amity Institute of Microbial Technology, Amity University, Noida, India
| | - Manika Khanuja
- Centre for Nanoscience and Nanotechnology, Jamia Millia Islamia, New Delhi, India
| | - Ram Prasad
- Amity Institute of Microbial Technology, Amity University, Noida, India
| | - Ajit Varma
- Amity Institute of Microbial Technology, Amity University, Noida, India
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Jin N, Paraskevaidi M, Semple KT, Martin FL, Zhang D. Infrared Spectroscopy Coupled with a Dispersion Model for Quantifying the Real-Time Dynamics of Kanamycin Resistance in Artificial Microbiota. Anal Chem 2017; 89:9814-9821. [DOI: 10.1021/acs.analchem.7b01765] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Naifu Jin
- Lancaster
Environment Centre, Lancaster University, Lancaster LA1 4YQ, United Kingdom
| | - Maria Paraskevaidi
- School
of Pharmacy and Biomedical Sciences, University of Central Lancashire, Preston PR1 2HE, United Kingdom
| | - Kirk T. Semple
- Lancaster
Environment Centre, Lancaster University, Lancaster LA1 4YQ, United Kingdom
| | - Francis L. Martin
- School
of Pharmacy and Biomedical Sciences, University of Central Lancashire, Preston PR1 2HE, United Kingdom
| | - Dayi Zhang
- Lancaster
Environment Centre, Lancaster University, Lancaster LA1 4YQ, United Kingdom
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Selwal MK, Selwal KK. Biogenic Synthesis of Silver Nanoparticles and Their Applications in Medicine. Fungal Biol 2017. [DOI: 10.1007/978-3-319-68424-6_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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