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Escobar C, Artigas V, Bacho M, Trujillo A. π-halogen interaction on the crystalline packing of 1,3,5-tris(4-bromophenyl)-1,3,5-triazine-2,4,6-trione·[solvate]. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131307] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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2
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Cheng HB, Zhang S, Qi J, Liang XJ, Yoon J. Advances in Application of Azobenzene as a Trigger in Biomedicine: Molecular Design and Spontaneous Assembly. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2007290. [PMID: 34028901 DOI: 10.1002/adma.202007290] [Citation(s) in RCA: 82] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 12/10/2020] [Indexed: 06/12/2023]
Abstract
Azobenzene is a well-known derivative of stimulus-responsive molecular switches and has shown superior performance as a functional material in biomedical applications. The results of multiple studies have led to the development of light/hypoxia-responsive azobenzene for biomedical use. In recent years, long-wavelength-responsive azobenzene has been developed. Matching the longer wavelength absorption and hypoxia-response characteristics of the azobenzene switch unit to the bio-optical window results in a large and effective stimulus response. In addition, azobenzene has been used as a hypoxia-sensitive connector via biological cleavage under appropriate stimulus conditions. This has resulted in on/off state switching of properties such as pharmacology and fluorescence activity. Herein, recent advances in the design and fabrication of azobenzene as a trigger in biomedicine are summarized.
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Affiliation(s)
- Hong-Bo Cheng
- State Key Laboratory of Organic-Inorganic Composites, Beijing Laboratory of Biomedical Materials, College of Materials Science and Engineering, Beijing University of Chemical Technology, 15 North Third Ring Road, Beijing, 100029, P. R. China
| | - Shuchun Zhang
- State Key Laboratory of Organic-Inorganic Composites, Beijing Laboratory of Biomedical Materials, College of Materials Science and Engineering, Beijing University of Chemical Technology, 15 North Third Ring Road, Beijing, 100029, P. R. China
| | - Ji Qi
- State Key Laboratory of Organic-Inorganic Composites, Beijing Laboratory of Biomedical Materials, College of Materials Science and Engineering, Beijing University of Chemical Technology, 15 North Third Ring Road, Beijing, 100029, P. R. China
| | - Xing-Jie Liang
- CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology of China, No. 11, First North Road, Zhongguancun, Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Juyoung Yoon
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 03760, Korea
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3
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Sam M, Dekamin MG, Alirezvani Z. Dendrons containing boric acid and 1,3,5-tris(2-hydroxyethyl)isocyanurate covalently attached to silica-coated magnetite for the expeditious synthesis of Hantzsch esters. Sci Rep 2021; 11:2399. [PMID: 33504833 PMCID: PMC7840758 DOI: 10.1038/s41598-020-80884-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Accepted: 12/30/2020] [Indexed: 01/30/2023] Open
Abstract
A new multifunctional dendritic nanocatalyst containing boric acid and 1,3,5-tris(2-hydroxyethyl)isocyanurate covalently attached to core-shell silica-coated magnetite (Fe3O4@SiO2@PTS-THEIC-(CH2)3OB(OH)2) was designed and properly characterized by different spectroscopic or microscopic methods as well as analytical techniques used for mesoporous materials. It was found that the combination of both aromatic π-π stacking and boron-oxygen ligand interactions affords supramolecular arrays of dendrons. Furthermore, the use of boric acid makes this dendritic catalyst a good choice, from corrosion, recyclability and cost points of view. The catalytic activity of Fe3O4@SiO2@PTS-THEIC-(CH2)3OB(OH)2, as an efficient magnetically recoverable catalyst, was investigated for the synthesis of polyhydroacridines (PHAs) as well as polyhydroquinolines (PHQs) via one-pot multicomponent reactions of dimedone and/or ethyl acetoacetate, different aldehydes and ammonium acetate in EtOH under reflux conditions. Very low loading of the catalyst, high to quantitative yields of the desired PHAs or PHQs products, short reaction times, wide scope of the substrates, eliminating any toxic heavy metals or corrosive reagents for the modification of the catalyst, and simple work-up procedure are remarkable advantages of this green protocol. An additional advantage of this magnetic nanoparticles catalyst is its ability to be separated and recycled easily from the reaction mixture with minimal efforts in six subsequent runs without significant loss of its catalytic activity. This magnetic and dendritic catalyst can be extended to new two- and three-dimensional covalent organic frameworks with different applications.
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Affiliation(s)
- Mahsa Sam
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology, 1684613114, Tehran, Iran
| | - Mohammad G Dekamin
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology, 1684613114, Tehran, Iran.
| | - Zahra Alirezvani
- Pharmaceutical and Heterocyclic Compounds Research Laboratory, Department of Chemistry, Iran University of Science and Technology, 1684613114, Tehran, Iran
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Dudek M, Tarnowicz-Staniak N, Deiana M, Pokładek Z, Samoć M, Matczyszyn K. Two-photon absorption and two-photon-induced isomerization of azobenzene compounds. RSC Adv 2020; 10:40489-40507. [PMID: 35520821 PMCID: PMC9057575 DOI: 10.1039/d0ra07693g] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 10/18/2020] [Indexed: 01/05/2023] Open
Abstract
The process of two-photon-induced isomerization occurring in various organic molecules, among which azobenzene derivatives hold a prominent position, offers a wide range of functionalities, which can be used in both material and life sciences. This review provides a comprehensive description of nonlinear optical (NLO) properties of azobenzene (AB) derivatives whose geometries can be switched through two-photon absorption (TPA). Employing the nonlinear excitation process allows for deeper penetration of light into the tissues and provides opportunities to regulate biological systems in a non-invasive manner. At the same time, the tight focus of the beam needed to induce nonlinear absorption helps to improve the spatial resolution of the photoinduced structures. Since near-infrared (NIR) wavelengths are employed, the lower photon energies compared to usual one-photon excitation (typically, the azobenzene geometry change from trans to cis form requires the use of UV photons) cause less damage to the biological samples. Herein, we present an overview of the strategies for optimizing azobenzene-based photoswitches for efficient two-photon excitation (TPE) and the potential applications of two-photon-induced isomerization of azobenzenes in biological systems: control of ion flow in ion channels or control of drug release, as well as in materials science, to fabricate data storage media, optical filters, diffraction elements etc., based on phenomena like photoinduced anisotropy, mass transport and phase transition. The extant challenges in the field of two-photon switchable azomolecules are discussed.
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Affiliation(s)
- Marta Dudek
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw Unviersity of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Nina Tarnowicz-Staniak
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw Unviersity of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Marco Deiana
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw Unviersity of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Ziemowit Pokładek
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw Unviersity of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Marek Samoć
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw Unviersity of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Katarzyna Matczyszyn
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw Unviersity of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
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5
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Gautier Y, Argouarch G, Malvolti F, Blondeau B, Richy N, Amar A, Boucekkine A, Nawara K, Chlebowicz K, Orzanowska G, Dudek M, Matczyszyn K, Samoc M, Blanchard‐Desce M, Mongin O, Waluk J, Paul F. Triarylisocyanurate‐Based Fluorescent Two‐Photon Absorbers. Chempluschem 2020; 85:411-425. [DOI: 10.1002/cplu.202000036] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Revised: 02/03/2020] [Indexed: 12/20/2022]
Affiliation(s)
- Yohan Gautier
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Gilles Argouarch
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Floriane Malvolti
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Benjamin Blondeau
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Nicolas Richy
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Anissa Amar
- Département de Chimie Faculté des SciencesUniversité Mouloud Mammeri 15000 Tizi-Ouzou Algeria
| | - Abdou Boucekkine
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Krzysztof Nawara
- Faculty of Mathematics and ScienceCardinal Stefan Wyszyński University 01-815 Warsaw Poland
| | - Katarzyna Chlebowicz
- Faculty of Mathematics and ScienceCardinal Stefan Wyszyński University 01-815 Warsaw Poland
| | - Grażyna Orzanowska
- Institute of Physical ChemistryPolish Academy of Sciences Dear author, please add 01-224 Warsaw Poland
| | - Marta Dudek
- Advanced Materials Engineering and Modelling GroupWroclaw University of Science and Technology 50-370 Wroclaw Poland
| | - Katarzyna Matczyszyn
- Advanced Materials Engineering and Modelling GroupWroclaw University of Science and Technology 50-370 Wroclaw Poland
| | - Marek Samoc
- Advanced Materials Engineering and Modelling GroupWroclaw University of Science and Technology 50-370 Wroclaw Poland
| | | | - Olivier Mongin
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
| | - Jacek Waluk
- Faculty of Mathematics and ScienceCardinal Stefan Wyszyński University 01-815 Warsaw Poland
- Institute of Physical ChemistryPolish Academy of Sciences Dear author, please add 01-224 Warsaw Poland
| | - Frédéric Paul
- Univ Rennes, CNRSISCR (Institut des Sciences Chimiques de Rennes), UMR 6226 35000 Rennes France
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6
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Savchenko V, Koch M, Pavlov AS, Saphiannikova M, Guskova O. Stacks of Azobenzene Stars: Self-Assembly Scenario and Stabilising Forces Quantified in Computer Modelling. Molecules 2019; 24:E4387. [PMID: 31801297 PMCID: PMC6930662 DOI: 10.3390/molecules24234387] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 11/25/2019] [Accepted: 11/28/2019] [Indexed: 12/27/2022] Open
Abstract
In this paper, the columnar supramolecular aggregates of photosensitive star-shaped azobenzenes with benzene-1,3,5-tricarboxamide core and azobenzene arms are analyzed theoretically by applying a combination of computer simulation techniques. Without a light stimulus, the azobenzene arms adopt the trans-state and build one-dimensional columns of stacked molecules during the first stage of the noncovalent association. These columnar aggregates represent the structural elements of more complex experimentally observed morphologies-fibers, spheres, gels, and others. Here, we determine the most favorable mutual orientations of the trans-stars in the stack in terms of (i) the π - π distance between the cores lengthwise the aggregate, (ii) the lateral displacements due to slippage and (iii) the rotation promoting the helical twist and chirality of the aggregate. To this end, we calculate the binding energy diagrams using density functional theory. The model predictions are further compared with available experimental data. The intermolecular forces responsible for the stability of the stacks in crystals are quantified using Hirshfeld surface analysis. Finally, to characterize the self-assembly mechanism of the stars in solution, we calculate the hydrogen bond lengths, the normalized dipole moments and the binding energies as functions of the columnar length. For this, molecular dynamics trajectories are analyzed. Finally, we conclude about the cooperative nature of the self-assembly of star-shaped azobenzenes with benzene-1,3,5-tricarboxamide core in aqueous solution.
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Affiliation(s)
- Vladyslav Savchenko
- Dresden Center for Computational Materials Science (DCMS), Technische Universität Dresden, 01062 Dresden, Germany; (V.S.); (M.S.)
- Institute Theory of Polymers, Leibniz Institute of Polymer Research Dresden, Hohe Str. 6, 01069 Dresden, Germany;
| | - Markus Koch
- Institute Theory of Polymers, Leibniz Institute of Polymer Research Dresden, Hohe Str. 6, 01069 Dresden, Germany;
| | - Aleksander S. Pavlov
- Department of Physical Chemistry, Faculty of Chemistry and Technology, Tver State University, Sadovyj per. 35, Tver 170002, Russia;
| | - Marina Saphiannikova
- Dresden Center for Computational Materials Science (DCMS), Technische Universität Dresden, 01062 Dresden, Germany; (V.S.); (M.S.)
- Institute Theory of Polymers, Leibniz Institute of Polymer Research Dresden, Hohe Str. 6, 01069 Dresden, Germany;
| | - Olga Guskova
- Dresden Center for Computational Materials Science (DCMS), Technische Universität Dresden, 01062 Dresden, Germany; (V.S.); (M.S.)
- Institute Theory of Polymers, Leibniz Institute of Polymer Research Dresden, Hohe Str. 6, 01069 Dresden, Germany;
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7
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Sperner M, Tober N, Detert H. Tristriazolotriazines with Azobenzene Arms ‐ Acidochromic Dyes and Discotic Liquid Crystals. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900665] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Marcel Sperner
- Institute for Organic Chemistry Johannes Gutenberg‐University Mainz Duesbergweg, 10–14 55099 Mainz Germany
| | - Natalie Tober
- Institute for Organic Chemistry Johannes Gutenberg‐University Mainz Duesbergweg, 10–14 55099 Mainz Germany
| | - Heiner Detert
- Institute for Organic Chemistry Johannes Gutenberg‐University Mainz Duesbergweg, 10–14 55099 Mainz Germany
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8
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Cabré G, Garrido-Charles A, Moreno M, Bosch M, Porta-de-la-Riva M, Krieg M, Gascón-Moya M, Camarero N, Gelabert R, Lluch JM, Busqué F, Hernando J, Gorostiza P, Alibés R. Rationally designed azobenzene photoswitches for efficient two-photon neuronal excitation. Nat Commun 2019; 10:907. [PMID: 30796228 PMCID: PMC6385291 DOI: 10.1038/s41467-019-08796-9] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Accepted: 01/24/2019] [Indexed: 12/15/2022] Open
Abstract
Manipulation of neuronal activity using two-photon excitation of azobenzene photoswitches with near-infrared light has been recently demonstrated, but their practical use in neuronal tissue to photostimulate individual neurons with three-dimensional precision has been hampered by firstly, the low efficacy and reliability of NIR-induced azobenzene photoisomerization compared to one-photon excitation, and secondly, the short cis state lifetime of the two-photon responsive azo switches. Here we report the rational design based on theoretical calculations and the synthesis of azobenzene photoswitches endowed with both high two-photon absorption cross section and slow thermal back-isomerization. These compounds provide optimized and sustained two-photon neuronal stimulation both in light-scattering brain tissue and in Caenorhabditis elegans nematodes, displaying photoresponse intensities that are comparable to those achieved under one-photon excitation. This finding opens the way to use both genetically targeted and pharmacologically selective azobenzene photoswitches to dissect intact neuronal circuits in three dimensions.
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Affiliation(s)
- Gisela Cabré
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - Aida Garrido-Charles
- Institut de Bioenginyeria de Catalunya (IBEC), Barcelona Institute of Science and Technology (BIST), Barcelona, 08028, Spain
| | - Miquel Moreno
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - Miquel Bosch
- Institut de Bioenginyeria de Catalunya (IBEC), Barcelona Institute of Science and Technology (BIST), Barcelona, 08028, Spain
| | - Montserrat Porta-de-la-Riva
- Institut de Ciències Fotòniques (ICFO), The Barcelona Institute of Science and Technology (BIST), Castelldefels, Barcelona, 08860, Spain
| | - Michael Krieg
- Institut de Ciències Fotòniques (ICFO), The Barcelona Institute of Science and Technology (BIST), Castelldefels, Barcelona, 08860, Spain
| | - Marta Gascón-Moya
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - Núria Camarero
- Institut de Bioenginyeria de Catalunya (IBEC), Barcelona Institute of Science and Technology (BIST), Barcelona, 08028, Spain
| | - Ricard Gelabert
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - José M Lluch
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - Félix Busqué
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - Jordi Hernando
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain
| | - Pau Gorostiza
- Institut de Bioenginyeria de Catalunya (IBEC), Barcelona Institute of Science and Technology (BIST), Barcelona, 08028, Spain.
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, 08010, Spain.
- Centro de Investigación Biomédica en Red en Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Zaragoza, 50018, Spain.
| | - Ramon Alibés
- Departament de Química, Universitat Autònoma de Barcelona (UAB), Cerdanyola del Vallès, 08193, Spain.
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9
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Dudek M, Deiana M, Pokladek Z, Pawlik K, Matczyszyn K. Reversible Photocontrol of DNA Melting by Visible-Light-Responsive F4-Coordinated Azobenzene Compounds. Chemistry 2018; 24:18963-18970. [PMID: 30198626 DOI: 10.1002/chem.201803529] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Indexed: 12/23/2022]
Abstract
Spatiotemporal control over the regulation of intra- and intermolecular motions in naturally occurring systems is systematically studied to expand the toolbox of mechanical operations in multicomponent nanoarchitectures. DNA is ideally suited for programming light-powered processes that are based on a minimalist molecular design. Here, the noncovalent incorporation of bistable photoswitches into B-like DNA moieties is shown to trigger the thermal transition midpoint of the duplexes by converting visible light into directed mechanical work by orchestrating the collective actions of the photoresponsive chromophores and the host DNA nanostructures. Besides its practical applications, the resulting hybrid nanosystem bears unique features of modulability, biocompatibility, reversibility, and addressability, which are key components for developing molecular photon-controlled programmed materials.
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Affiliation(s)
- Marta Dudek
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw University of Science and Technology, Wyb. Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Marco Deiana
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw University of Science and Technology, Wyb. Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Ziemowit Pokladek
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw University of Science and Technology, Wyb. Wyspianskiego 27, 50-370, Wroclaw, Poland
| | - Krzysztof Pawlik
- Ludwik Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Rudolfa Weigla 12, 53-114, Wroclaw, Poland
| | - Katarzyna Matczyszyn
- Advanced Materials Engineering and Modelling Group, Faculty of Chemistry, Wroclaw University of Science and Technology, Wyb. Wyspianskiego 27, 50-370, Wroclaw, Poland
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