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Kapinusova G, Lopez Marin MA, Uhlik O. Reaching unreachables: Obstacles and successes of microbial cultivation and their reasons. Front Microbiol 2023; 14:1089630. [PMID: 36960281 PMCID: PMC10027941 DOI: 10.3389/fmicb.2023.1089630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 02/10/2023] [Indexed: 03/09/2023] Open
Abstract
In terms of the number and diversity of living units, the prokaryotic empire is the most represented form of life on Earth, and yet it is still to a significant degree shrouded in darkness. This microbial "dark matter" hides a great deal of potential in terms of phylogenetically or metabolically diverse microorganisms, and thus it is important to acquire them in pure culture. However, do we know what microorganisms really need for their growth, and what the obstacles are to the cultivation of previously unidentified taxa? Here we review common and sometimes unexpected requirements of environmental microorganisms, especially soil-harbored bacteria, needed for their replication and cultivation. These requirements include resuscitation stimuli, physical and chemical factors aiding cultivation, growth factors, and co-cultivation in a laboratory and natural microbial neighborhood.
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Affiliation(s)
| | | | - Ondrej Uhlik
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Czechia
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2
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Szittner Z, Péter B, Kurunczi S, Székács I, Horváth R. Functional blood cell analysis by label-free biosensors and single-cell technologies. Adv Colloid Interface Sci 2022; 308:102727. [DOI: 10.1016/j.cis.2022.102727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 05/25/2022] [Accepted: 06/27/2022] [Indexed: 11/01/2022]
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3
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N M, Lukose J, Mohan G, Shastry S, Chidangil S. Single cell spectroscopy of red blood cells in intravenous crystalloid fluids. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 257:119726. [PMID: 33848954 DOI: 10.1016/j.saa.2021.119726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 03/06/2021] [Accepted: 03/15/2021] [Indexed: 06/12/2023]
Abstract
Crystalloid fluids, a subset of intravenous (IV) fluid solutions are commonly used in clinical settings. The influence of these fluids on the functions of blood components are least explored. Raman spectroscopy combined with optical trapping has been widely used to evaluate the impact of external stress agents on red blood cells. The present study investigates the impact of commonly used crystalloid fluids on red blood cells in comparison with that of blood plasma using Raman Tweezers spectroscopy. The red blood cells suspended in crystalloid fluids undergo deoxygenation readily than that in blood plasma. In addition, cells in blood plasma were able to withstand laser induced deoxygenation comparatively better than that in crystalloid fluids at higher laser powers. Principle component analysis of the Raman spectral data has clearly demonstrated the discrimination of cells in plasma with that of crystalloid fluids demonstrating the effect of external induced stress on RBCs.
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Affiliation(s)
- Mithun N
- Centre of Excellence for Biophotonics, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, Manipal, Karnataka 576104, India
| | - Jijo Lukose
- Centre of Excellence for Biophotonics, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, Manipal, Karnataka 576104, India
| | - Ganesh Mohan
- Department of Immunohematology and Blood Transfusion, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Karnataka 576104, India
| | - Shamee Shastry
- Department of Immunohematology and Blood Transfusion, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Karnataka 576104, India
| | - Santhosh Chidangil
- Centre of Excellence for Biophotonics, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, Manipal, Karnataka 576104, India.
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Dong A, Islam MS, Albin S, Deo M. Accurate Estimation of Refractive Indices of Organic Microparticles in Dual-Beam Optical Trap. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:2213-2216. [PMID: 33018447 DOI: 10.1109/embc44109.2020.9176338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The Refractive Index (RI) is an important parameter of characterizing optical properties of particles. In a dual-beam optical trap, two counter-propagating laser beams are used to trap micro-particles suspended in an aqueous medium. When a ray of light passes from one medium of lower RI (e.g. aqueous suspension medium) to another medium of higher RI (e.g. suspended particle), its momentum changes which exerts a proportional trapping force on the surface of the particle. Thus, accurate knowledge of RI of the particles and the surrounding medium is needed to determine the behavior of particles in an optical trap. The RI of micro-sized beads can be experimentally measured using traditional optical methods such as absorption microscopy. We developed an alternative theoretical method to estimate the RI of trapped particles based on non-contact optical trapping experimental outcomes. In our study, a theoretical model was formulated based on the experimentally measured minimum trapping powers for polystyrene and polyethylene beads using a dual-beam optical setup. The tendencies of trapping power-RI curves predicted by our model agreed very well with those measured experimentally. Our technique provides an alternative approach to determining the RI of a certain micro-size particle regardless of its size or density. Our method is especially advantageous over traditional methods to determine RI of biological particles which exhibit significant variations based on physiological and environmental conditions.
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Huang H, Dai C, Shen H, Gu M, Wang Y, Liu J, Chen L, Sun L. Recent Advances on the Model, Measurement Technique, and Application of Single Cell Mechanics. Int J Mol Sci 2020; 21:E6248. [PMID: 32872378 PMCID: PMC7504142 DOI: 10.3390/ijms21176248] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 08/19/2020] [Accepted: 08/27/2020] [Indexed: 02/06/2023] Open
Abstract
Since the cell was discovered by humans, it has been an important research subject for researchers. The mechanical response of cells to external stimuli and the biomechanical response inside cells are of great significance for maintaining the life activities of cells. These biomechanical behaviors have wide applications in the fields of disease research and micromanipulation. In order to study the mechanical behavior of single cells, various cell mechanics models have been proposed. In addition, the measurement technologies of single cells have been greatly developed. These models, combined with experimental techniques, can effectively explain the biomechanical behavior and reaction mechanism of cells. In this review, we first introduce the basic concept and biomechanical background of cells, then summarize the research progress of internal force models and experimental techniques in the field of cell mechanics and discuss the latest mechanical models and experimental methods. We summarize the application directions of cell mechanics and put forward the future perspectives of a cell mechanics model.
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Affiliation(s)
| | | | | | | | | | - Jizhu Liu
- School of Mechanical and Electric Engineering, Jiangsu Provincial Key Laboratory of Advanced Robotics, Soochow University, Suzhou 215123, China; (H.H.); (C.D.); (H.S.); (M.G.); (Y.W.); (L.S.)
| | - Liguo Chen
- School of Mechanical and Electric Engineering, Jiangsu Provincial Key Laboratory of Advanced Robotics, Soochow University, Suzhou 215123, China; (H.H.); (C.D.); (H.S.); (M.G.); (Y.W.); (L.S.)
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Yadav A, Dutta A, Kumar P, Dahan Y, Aranovich A, Feingold M. Optimal trapping stability of Escherichia coli in oscillating optical tweezers. Phys Rev E 2020; 101:062402. [PMID: 32688596 DOI: 10.1103/physreve.101.062402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 04/07/2020] [Indexed: 11/07/2022]
Abstract
Single-beam oscillating optical tweezers can be used to trap rod-shaped bacterial cells and align them with their long axis lying within the focal plane. While such configuration is useful for imaging applications, the corresponding imaging resolution is limited by the fluctuations of the trapped cell. We study the fluctuations of four of the coordinates of the trapped cell, two for its center of mass position and two for its angular orientation, showing the way they depend on the trap length and the trapping beam power. We find that optimal trapping stability is obtained when the trap length is about the same as the cell length and that cell fluctuations in the focal plane decrease like the inverse of the trapping power.
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Affiliation(s)
- Amarjeet Yadav
- Department of Physics and The Ilse Katz Center for Nanotechnology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Anindita Dutta
- Department of Physics and The Ilse Katz Center for Nanotechnology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Pramod Kumar
- Department of Physics and The Ilse Katz Center for Nanotechnology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel.,Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan 52900, Israel
| | - Yuval Dahan
- Department of Physics and The Ilse Katz Center for Nanotechnology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Alexander Aranovich
- Department of Physics and The Ilse Katz Center for Nanotechnology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Mario Feingold
- Department of Physics and The Ilse Katz Center for Nanotechnology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel
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Glass DG, McAlinden N, Millington OR, Wright AJ. A minimally invasive optical trapping system to understand cellular interactions at onset of an immune response. PLoS One 2017; 12:e0188581. [PMID: 29220398 PMCID: PMC5722315 DOI: 10.1371/journal.pone.0188581] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Accepted: 11/09/2017] [Indexed: 02/02/2023] Open
Abstract
T-cells and antigen presenting cells are an essential part of the adaptive immune response system and how they interact is crucial in how the body effectively fights infection or responds to vaccines. Much of the experimental work studying interaction forces between cells has looked at the average properties of bulk samples of cells or applied microscopy to image the dynamic contact between these cells. In this paper we present a novel optical trapping technique for interrogating the force of this interaction and measuring relative interaction forces at the single-cell level. A triple-spot optical trap is used to directly manipulate the cells of interest without introducing foreign bodies such as beads to the system. The optical trap is used to directly control the initiation of cell-cell contact and, subsequently to terminate the interaction at a defined time point. The laser beam power required to separate immune cell pairs is determined and correlates with the force applied by the optical trap. As proof of concept, the antigen-specific increase in interaction force between a dendritic cell and a specific T-cell is demonstrated. Furthermore, it is demonstrated that this interaction force is completely abrogated when T-cell signalling is blocked. As a result the potential of using optical trapping to interrogate cellular interactions at the single cell level without the need to introduce foreign bodies such as beads is clearly demonstrated.
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Affiliation(s)
- David G. Glass
- Institute of Photonics, SUPA, The University of Strathclyde, Glasgow, United Kingdom
- Strathclyde Institute of Pharmacy and Biomedical Sciences, The University of Strathclyde, Glasgow, United Kingdom
| | - Niall McAlinden
- Institute of Photonics, SUPA, The University of Strathclyde, Glasgow, United Kingdom
| | - Owain R. Millington
- Strathclyde Institute of Pharmacy and Biomedical Sciences, The University of Strathclyde, Glasgow, United Kingdom
| | - Amanda J. Wright
- Optics and Photonics Group, Department of Electrical and Electronic Engineering, The University of Nottingham, Nottingham, United Kingdom
- * E-mail:
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8
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Greulich KO. Manipulation of cells with laser microbeam scissors and optical tweezers: a review. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2017; 80:026601. [PMID: 28008877 DOI: 10.1088/1361-6633/80/2/026601] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The use of laser microbeams and optical tweezers in a wide field of biological applications from genomic to immunology is discussed. Microperforation is used to introduce a well-defined amount of molecules into cells for genetic engineering and optical imaging. The microwelding of two cells induced by a laser microbeam combines their genetic outfit. Microdissection allows specific regions of genomes to be isolated from a whole set of chromosomes. Handling the cells with optical tweezers supports investigation on the attack of immune systems against diseased or cancerous cells. With the help of laser microbeams, heart infarction can be simulated, and optical tweezers support studies on the heartbeat. Finally, laser microbeams are used to induce DNA damage in living cells for studies on cancer and ageing.
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9
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Jo Y, Shen F, Hahn YK, Park JH, Park JK. Magnetophoretic Sorting of Single Cell-Containing Microdroplets. MICROMACHINES 2016; 7:mi7040056. [PMID: 30407429 PMCID: PMC6190288 DOI: 10.3390/mi7040056] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2016] [Revised: 03/23/2016] [Accepted: 03/28/2016] [Indexed: 11/16/2022]
Abstract
Droplet microfluidics is a promising tool for single-cell analysis since single cell can be comparted inside a tiny volume. However, droplet encapsulation of single cells still remains a challenging issue due to the low ratio of droplets containing single cells. Here, we introduce a simple and robust single cell sorting platform based on a magnetophoretic method using monodisperse magnetic nanoparticles (MNPs) and droplet microfluidics with >94% purity. There is an approximately equal amount of MNPs in the same-sized droplet, which has the same magnetic force under the magnetic field. However, the droplets containing single cells have a reduced number of MNPs, as much as the volume of the cell inside the droplet, resulting in a low magnetic force. Based on this simple principle, this platform enables the separation of single cell-encapsulated droplets from the droplets with no cells. Additionally, this device uses only a permanent magnet without any complex additional apparatus; hence, this new platform can be integrated into a single cell analysis system considering its effectiveness and convenience.
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Affiliation(s)
- Younggeun Jo
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
| | - Fengshan Shen
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
| | - Young Ki Hahn
- Samsung Electronics, 4 Seocho-daero 74-gil, Seocho-gu, Seoul 06620, Republic of Korea.
| | - Ji-Ho Park
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
| | - Je-Kyun Park
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
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10
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Xu J, Lei Z, Guo J, Huang J, Wang W, Reibetanz U, Xu S. Trapping and Driving Individual Charged Micro-particles in Fluid with an Electrostatic Device. NANO-MICRO LETTERS 2016; 8:270-281. [PMID: 30460287 PMCID: PMC6223688 DOI: 10.1007/s40820-016-0087-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Accepted: 02/05/2016] [Indexed: 05/04/2023]
Abstract
A variety of micro-tweezers techniques, such as optical tweezers, magnetic tweezers, and dielectrophoresis technique, have been applied intensively in precise characterization of micro/nanoparticles and bio-molecules. They have contributed remarkably in better understanding of working mechanisms of individual sub-cell organelles, proteins, and DNA. In this paper, we present a controllable electrostatic device embedded in a microchannel, which is capable of driving, trapping, and releasing charged micro-particles suspended in microfluid, demonstrating the basic concepts of electrostatic tweezers. Such a device is scalable to smaller size and offers an alternative to currently used micro-tweezers for application in sorting, selecting, manipulating, and analyzing individual micro/nanoparticles. Furthermore, the system offers the potential in being combined with dielectrophoresis and other techniques to create hybrid micro-manipulation systems.
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Affiliation(s)
- Jingjing Xu
- Key Laboratory for the Physics & Chemistry of Nanodevices, and Department of Electronics, Peking University, Beijing, 100871 People’s Republic of China
| | - Zijing Lei
- Key Laboratory for the Physics & Chemistry of Nanodevices, and Department of Electronics, Peking University, Beijing, 100871 People’s Republic of China
| | - Jingkun Guo
- Key Laboratory for the Physics & Chemistry of Nanodevices, and Department of Electronics, Peking University, Beijing, 100871 People’s Republic of China
| | - Jie Huang
- Institute of Microelectronics, Peking University, Beijing, 100871 People’s Republic of China
| | - Wei Wang
- Institute of Microelectronics, Peking University, Beijing, 100871 People’s Republic of China
| | - Uta Reibetanz
- Medical Faculty, Institute for Medical Physics and Biophysics, University of Leipzig, 04103 Leipzig, Germany
| | - Shengyong Xu
- Key Laboratory for the Physics & Chemistry of Nanodevices, and Department of Electronics, Peking University, Beijing, 100871 People’s Republic of China
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11
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Saito K, Tanabe T, Oyama Y. Concept of annular vector beam generation at terahertz wavelengths via a nonlinear parametric process. APPLIED OPTICS 2015; 54:2769-2775. [PMID: 25967188 DOI: 10.1364/ao.54.002769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2014] [Accepted: 03/03/2015] [Indexed: 06/04/2023]
Abstract
In this paper, we describe our theoretical investigation and calculations for a terahertz (THz)-wave profile generated by difference frequency mixing (DFM) of focused, cylindrically symmetric, and polarized optical vector beams. Using vector diffraction theory, the second-order nonlinear polarization was estimated from the electric field components of the optical pump beams penetrating uniaxial, birefringent nonlinear optics (NLO) crystals, GaSe and CdSe. The approximate beam patterns of the THz waves were simulated using DFM formulation. The intensity patterns of the THz waves for GaSe and CdSe showed sixfold symmetry and cylindrical symmetry, respectively, based on the nonlinear susceptibility tensor of the crystals. As the phase-matching angle θ(PM) was constant with respect to the c axis of the NLO crystals, an annular vector beam with a narrow width was expected.
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12
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Seeger S, Sick V, Volpp HR, Wolfrum J. Laser Applications in Chemistry and Biology: Stimulation, Observation, and Manipulation. Isr J Chem 2013. [DOI: 10.1002/ijch.199400004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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13
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He J, Wang X, Hu D, Ye J, Feng S, Kan Q, Zhang Y. Generation and evolution of the terahertz vortex beam. OPTICS EXPRESS 2013; 21:20230-20239. [PMID: 24105568 DOI: 10.1364/oe.21.020230] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Based on the complementary V-shaped antenna structure, ultrathin vortex phase plates are designed to achieve the terahertz (THz) optical vortices with different topological charges. Utilizing a THz holographic imaging system, the two dimensional complex field information of the generated THz vortex beam with the topological number l=1 is directly obtained. Its far field propagation properties are analyzed in detail, including the rotation, the twist direction, and the Gouy phase shift of the vortex phase. An analytic Laguerre-Gaussian mode is used to simulate and explain the measured phenomena. The experimental and simulation results overlap each other very well.
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15
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Aziz MS, Suwanpayak N, Jalil MA, Jomtarak R, Saktioto T, Ali J, Yupapin PP. Gold nanoparticle trapping and delivery for therapeutic applications. Int J Nanomedicine 2011; 7:11-7. [PMID: 22275818 PMCID: PMC3260946 DOI: 10.2147/ijn.s27417] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2011] [Indexed: 02/01/2023] Open
Abstract
A new optical trapping design to transport gold nanoparticles using a PANDA ring resonator system is proposed. Intense optical fields in the form of dark solitons controlled by Gaussian pulses are used to trap and transport nanoscopic volumes of matter to the desired destination via an optical waveguide. Theoretically, the gradient and scattering forces are responsible for this trapping phenomenon, where in practice such systems can be fabricated and a thin-film device formed on the specific artificial medical materials, for instance, an artificial bone. The dynamic behavior of the tweezers can be tuned by controlling the optical pulse input power and parameters of the ring resonator system. Different trap sizes can be generated to trap different gold nanoparticles sizes, which is useful for gold nanoparticle therapy. In this paper, we have shown the utility of gold nanoparticle trapping and delivery for therapy, which may be useful for cosmetic therapy and related applications.
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Affiliation(s)
- MS Aziz
- Institute of Advanced Photonics Science
| | - Nathaporn Suwanpayak
- King Mongkut’s Institute of Technology Ladkrabang, Chump on Campus, Chumphon
- Nanoscale Science and Engineering Research Alliance (N’SERA), Faculty of Science, King Mongkut’s Institute of Technology Ladkrabang, Bangkok, Thailand
| | - Muhammad Arif Jalil
- Ibnu Sina Institute of Fundamental Science Studies, Nanotechnology Research Alliance, Universiti Teknologi Malaysia, Johor Bahru, Malaysia
| | - R Jomtarak
- Nanoscale Science and Engineering Research Alliance (N’SERA), Faculty of Science, King Mongkut’s Institute of Technology Ladkrabang, Bangkok, Thailand
| | - T Saktioto
- Ibnu Sina Institute of Fundamental Science Studies, Nanotechnology Research Alliance, Universiti Teknologi Malaysia, Johor Bahru, Malaysia
| | - Jalil Ali
- Institute of Advanced Photonics Science
| | - PP Yupapin
- Nanoscale Science and Engineering Research Alliance (N’SERA), Faculty of Science, King Mongkut’s Institute of Technology Ladkrabang, Bangkok, Thailand
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16
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Greulich KO. Photons bring light into DNA repair: the comet assay and laser microbeams for studying photogenotoxicity of drugs and ageing. JOURNAL OF BIOPHOTONICS 2011; 4:165-171. [PMID: 21287688 DOI: 10.1002/jbio.201000102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2010] [Revised: 10/17/2010] [Accepted: 11/19/2010] [Indexed: 05/30/2023]
Abstract
This contribution reviews recent applications of micromanipulation, by UV photons, in DNA repair and ageing research as well as in the evaluation of the phototoxicity of drugs. In some cases, micromanipulation is combined with the comet assay, a technique, which allows a direct view on DNA damages. It is shown that, in humans, the sensitivity of DNA to UV induced damage and its subsequent repair is surprisingly stable up to high age and that drugs which are usually non-toxic induce DNA damage when irradiated in parallel by UV irradiation. Using the immune fluorescent comet assay, IFCA, a variant of the comet assay, direct comparison of the effects of ionizing (137) Cs radiation with those of localized UV radiation is possible. When a laser microbeam is used to damage DNA in a cell nucleus with high temporal and spatial resolution, it can be observed directly how repair molecules accumulate (are recruited) at the site of damage. Comparison of the recruitment speed allows establishing an order of DNA repair events.
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Affiliation(s)
- Karl Otto Greulich
- Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany.
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17
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Stevenson DJ, Gunn-Moore F, Dholakia K. Light forces the pace: optical manipulation for biophotonics. JOURNAL OF BIOMEDICAL OPTICS 2010; 15:041503. [PMID: 20799781 DOI: 10.1117/1.3475958] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The biomedical sciences have benefited immensely from photonics technologies in the last 50 years. This includes the application of minute forces that enable the trapping and manipulation of cells and single molecules. In terms of the area of biophotonics, optical manipulation has made a seminal contribution to our understanding of the dynamics of single molecules and the microrheology of cells. Here we present a review of optical manipulation, emphasizing its impact on the areas of single-molecule studies and single-cell biology, and indicating some of the key experiments in the fields.
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Affiliation(s)
- David James Stevenson
- University of St Andrews, Scottish Universities Physics Alliance, School of Physics and Astronomy, North Haugh, Fife, United Kingdom.
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18
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Abstract
In the last decade optical manipulation has evolved from a field of interest for physicists to a versatile tool widely used within life sciences. This has been made possible in particular due to the development of a large variety of imaging techniques that allow detailed information to be gained from investigations of single cells. The use of multiple optical traps has high potential within single-cell analysis since parallel measurements provide good statistics. Multifunctional optical tweezers are, for instance, used to study cell heterogeneity in an ensemble, and force measurements are used to investigate the mechanical properties of individual cells. Investigations of molecular motors and forces on the single-molecule level have led to discoveries that would have been difficult to make with other techniques. Optical manipulation has prospects within the field of cell signalling and tissue engineering. When combined with microfluidic systems the chemical environment of cells can be precisely controlled. Hence the influence of pH, salt concentration, drugs and temperature can be investigated in real time. Fast advancing technical developments of automated and user-friendly optical manipulation tools and cross-disciplinary collaboration will contribute to the routinely use of optical manipulation techniques within the life sciences.
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Affiliation(s)
- Kerstin Ramser
- Department of Computer Science and Electrical Engineering, Luleå University of Technology, Luleå, Sweden
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19
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Pine PS. Overview of laser microbeam applications as related to antibody targeting. Methods Mol Biol 2010; 588:203-217. [PMID: 20012833 DOI: 10.1007/978-1-59745-324-0_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
This chapter reviews several techniques which combine the use of laser microbeams with antibodies to study molecular and cellular biology. An overview of the basic properties of lasers and their integration with microscopes and computers is provided. Biophysical applications, such as fluorescence recovery after photobleaching to measure molecular mobility and fluorescence resonance energy transfer to measure molecular distances, as well as ablative applications for the selective inactivation of proteins or the selective killing of cells are described. Other techniques, such as optical trapping, that do not rely on the interaction of the laser with the targeting antibody, are also discussed.
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Affiliation(s)
- P Scott Pine
- Division of Applied Pharmacology and Research, Center for Drug Evaluation and Research, Food and Drug Administration, Sliver Spring, MD, USA
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20
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Kim DH, Wong PK, Park J, Levchenko A, Sun Y. Microengineered platforms for cell mechanobiology. Annu Rev Biomed Eng 2009; 11:203-33. [PMID: 19400708 DOI: 10.1146/annurev-bioeng-061008-124915] [Citation(s) in RCA: 236] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Mechanical forces play important roles in the regulation of various biological processes at the molecular and cellular level, such as gene expression, adhesion, migration, and cell fate, which are essential to the maintenance of tissue homeostasis. In this review, we discuss emerging bioengineered tools enabled by microscale technologies for studying the roles of mechanical forces in cell biology. In addition to traditional mechanobiology experimental techniques, we review recent advances of microelectromechanical systems (MEMS)-based approaches for cell mechanobiology and discuss how microengineered platforms can be used to generate in vivo-like micromechanical environment in in vitro settings for investigating cellular processes in normal and pathophysiological contexts. These capabilities also have significant implications for mechanical control of cell and tissue development and cell-based regenerative therapies.
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Affiliation(s)
- Deok-Ho Kim
- Department of Biomedical Engineering, The Johns Hopkins University, Baltimore, Maryland 21218, USA.
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Grigaravicius P, Greulich KO, Monajembashi S. Laser microbeams and optical tweezers in ageing research. Chemphyschem 2009; 10:79-85. [PMID: 19090523 DOI: 10.1002/cphc.200800725] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We show how a technique developed within the framework of physics and physical chemistry-in a true interdisciplinary approach-can answer questions in life sciences that are not solvable by using other techniques. Herein, we focus on blood-pressure regulation and DNA repair in ageing studies. Laser microbeams and optical tweezers are now established tools in many fields of science, particularly in the life sciences. A short glimpse is given on the wide field of non-age-research applications in life sciences. Then, optical tweezers are used to show that exerting a vertical pressure on cells representing the inner lining of blood vessels results in bursts of NO liberation concomitant with large changes in cell morphology. Repeated treatment of such human umbilical vein endothelial cells (HUVEC) results in stiffening, a hallmark of manifest high blood pressure, a disease primarily of the elderly. As a second application in ageing research, a laser microbeam is used to induce, with high spatial and temporal resolution, DNA damages in the nuclei of U2OS human osteosarcoma cells. A pairwise study of the recruitment kinetics of different DNA repair proteins reveals that DNA repair starts with non-homologous end joining (NHEJ), a repair pathway, and may only after several minutes switch to the error-free homologous recombination repair (HRR) pathway. Since DNA damages-when incorrectly repaired-accumulate with time, laser microbeams are becoming well-used tools in ageing research.
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22
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Dhar P, Tierno P, Hare J, Johansen TH, Fischer TM. Curvature Driven Transport of Mouse Macrophages in a Pulsating Magnetic Garnet Film Ratchet. J Phys Chem B 2007; 111:13097-100. [DOI: 10.1021/jp0764485] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Prajnaparamita Dhar
- Department of Chemistry and Biochemistry, The Florida State University, Tallahassee, Florida 32306, Departament de Química Física, Universitat de Barcelona, Martí i Franquès 1, E-08028 Barcelona, Spain, Institute of Molecular Biophysics, The Florida State University, Tallahassee, Florida 32304, Department of Physics, University of Oslo, Blindern, Norway, and Physikalisches Institut für Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth
| | - Pietro Tierno
- Department of Chemistry and Biochemistry, The Florida State University, Tallahassee, Florida 32306, Departament de Química Física, Universitat de Barcelona, Martí i Franquès 1, E-08028 Barcelona, Spain, Institute of Molecular Biophysics, The Florida State University, Tallahassee, Florida 32304, Department of Physics, University of Oslo, Blindern, Norway, and Physikalisches Institut für Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth
| | - Joan Hare
- Department of Chemistry and Biochemistry, The Florida State University, Tallahassee, Florida 32306, Departament de Química Física, Universitat de Barcelona, Martí i Franquès 1, E-08028 Barcelona, Spain, Institute of Molecular Biophysics, The Florida State University, Tallahassee, Florida 32304, Department of Physics, University of Oslo, Blindern, Norway, and Physikalisches Institut für Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth
| | - Tom H. Johansen
- Department of Chemistry and Biochemistry, The Florida State University, Tallahassee, Florida 32306, Departament de Química Física, Universitat de Barcelona, Martí i Franquès 1, E-08028 Barcelona, Spain, Institute of Molecular Biophysics, The Florida State University, Tallahassee, Florida 32304, Department of Physics, University of Oslo, Blindern, Norway, and Physikalisches Institut für Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth
| | - Thomas M. Fischer
- Department of Chemistry and Biochemistry, The Florida State University, Tallahassee, Florida 32306, Departament de Química Física, Universitat de Barcelona, Martí i Franquès 1, E-08028 Barcelona, Spain, Institute of Molecular Biophysics, The Florida State University, Tallahassee, Florida 32304, Department of Physics, University of Oslo, Blindern, Norway, and Physikalisches Institut für Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth
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Sponner A, Vater W, Monajembashi S, Unger E, Grosse F, Weisshart K. Composition and hierarchical organisation of a spider silk. PLoS One 2007; 2:e998. [PMID: 17912375 PMCID: PMC1994588 DOI: 10.1371/journal.pone.0000998] [Citation(s) in RCA: 127] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2007] [Accepted: 09/11/2007] [Indexed: 11/19/2022] Open
Abstract
Albeit silks are fairly well understood on a molecular level, their hierarchical organisation and the full complexity of constituents in the spun fibre remain poorly defined. Here we link morphological defined structural elements in dragline silk of Nephila clavipes to their biochemical composition and physicochemical properties. Five layers of different make-ups could be distinguished. Of these only the two core layers contained the known silk proteins, but all can vitally contribute to the mechanical performance or properties of the silk fibre. Understanding the composite nature of silk and its supra-molecular organisation will open avenues in the production of high performance fibres based on artificially spun silk material.
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Affiliation(s)
- Alexander Sponner
- Department of Zoology, University of Oxford, Oxford, United Kingdom
- Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany
| | - Wolfram Vater
- Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany
| | | | - Eberhard Unger
- Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany
| | - Frank Grosse
- Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany
| | - Klaus Weisshart
- Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany
- * To whom correspondence should be addressed. E-mail:
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24
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Greulich KO. Selected applications of laser scissors and tweezers and new applications in heart research. Methods Cell Biol 2007; 82:59-80. [PMID: 17586254 DOI: 10.1016/s0091-679x(06)82002-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
This contribution bridges the gap from early European contributions via laser micromanipulation to recent work on the use of laser microbeams and optical tweezers in studies of basic aspects of heart infarction. Laser transfection, particularly of plant cells and their chloroplasts, and laser microdissection of chromosomes with subsequent generation of chromosome segment-specific DNA libraries and laser-induced cell fusion are reported. With optical tweezers, microgravity can be simulated in roots of the alga Chara. Surprisingly, microgravity reduces growth. In some plant cells, CW lasers, in principle suited primarily for optical tweezers, can be used as microbeam. Also, it is shown that natural killer cells mount an attack on leukemia cells even in the absence of specificity, just induced by exerting force with optical tweezers. Finally, with the help of a laser microbeam, lesions can be induced to study wound healing after heart infarction. A modification of optical tweezers, the erythrocyte-mediated force application (EMFA) technique can be used to induce calcium waves not only in tissue reconstituted from excitable heart muscle cells but also from nonexcitable fibroblasts.
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Affiliation(s)
- Karl Otto Greulich
- Leibniz Institute for Age Research/Fritz Lipmann Institute, D-07745 Jena, Germany
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25
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Hormeño S, Arias-Gonzalez JR. Exploring mechanochemical processes in the cell with optical tweezers. Biol Cell 2007; 98:679-95. [PMID: 17105446 DOI: 10.1042/bc20060036] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Force and torque, stress and strain or work are examples of mechanical and elastic actions which are intimately linked to chemical reactions in the cell. Optical tweezers are a light-based method which allows the real-time manipulation of single molecules and cells to measure their interactions. We describe the technique, briefly reviewing the operating principles and the potential capabilities to the study of biological processes. Additional emphasis is given to the importance of fluctuations in biology and how single-molecule techniques allow access to them. We illustrate the applications by addressing experimental configurations and recent progresses in molecular and cell biology.
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Affiliation(s)
- Silvia Hormeño
- Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, 28049 Madrid, Spain
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Abstract
This introductory chapter reviews the history of microbeams starting with the original UV microbeam work of Tchakhotine in 1912 and covers the progress and application of microbeams through 2006. The main focus of the chapter is on laser "scissors" starting with Marcel Bessis' and colleagues work with the ruby laser microbeam in Paris in 1962. Following this introduction, a section is devoted to describing the different laser microbeam systems and then the rest of the chapter is devoted to applications in cell and developmental biology. The approach is to focus on the organelle/structure and describe how the laser microbeam has been applied to studying its structure and/or function. Since considerable work has been done on chromosomes and the mitotic spindle (Section V.A and C), these topics have been divided in distinct subsections. Other topics discussed are injection of foreign DNA through the cell membrane (optoporation/optoinjection), cell migration, the nucleolus, mitochondria, cytoplasmic filaments, and embryos fate-mapping. A final technology section is devoted to discussing the pros and cons of building/buying your own laser microbeam system and the option of using the Internet-based RoboLase system. Throughout the chapter, reference is made to other chapters in the book that go into more detail on the subjects briefly mentioned.
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Affiliation(s)
- Michael W Berns
- Department of Biomedical Engineering, Beckman Laser Institute, University of California, Irvine, California 92612, USA
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Liu X, Wang H, Li Y, Tang Y, Liu Y, Hu X, Jia P, Ying K, Feng Q, Guan J, Jin C, Zhang L, Lou L, Zhou Z, Han B. Preparation of single rice chromosome for construction of a DNA library using a laser microbeam trap. J Biotechnol 2004; 109:217-26. [PMID: 15066759 DOI: 10.1016/j.jbiotec.2003.12.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2003] [Revised: 12/09/2003] [Accepted: 12/18/2003] [Indexed: 10/26/2022]
Abstract
We report the development of a laser micromanipulation system and its application in the isolation of individual rice chromosomes directly from a metaphase cell. Microdissection and flow sorting are two major methods for the isolation of single chromosome. These methods are dependent on the techniques of chromosome spread and chromosome suspension, respectively. In the development of this system, we avoided using chromosome spread and cell suspension was used instead. The cell wall of metaphase rice cell was cut by optical scissors. The released single chromosome was captured by an optical trap and transported to an area without cell debris. The isolated single chromosome was then collected and specific library was constructed by linker adaptor PCR. The average insert size of the library was about 300 bp. Two hundred inserts of chromosome 4 library were sequenced, and 96.5% were aligned to the corresponding sequences of rice chromosome 4. These results suggest the possible application of this method for the preparation of other subcellular structures and for the cloning of single macromolecule through a laser microbeam trap.
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Affiliation(s)
- Xiaohui Liu
- National Center for Gene Research, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China
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Wang H, Liu X, Li Y, Han B, Lou L, Wang K. Isolation of a single rice chromosome by optical micromanipulation. ACTA ACUST UNITED AC 2003. [DOI: 10.1088/1464-4258/6/1/016] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Gale JM, Romero CP, Tafoya GB, Conia J. Application of optical trapping for cells grown on plates: optimization of PCR and fidelity of DNA sequencing of p53 gene from a single cell. Clin Chem 2003; 49:415-24. [PMID: 12600953 DOI: 10.1373/49.3.415] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
BACKGROUND Optical trapping has traditionally been used to visually select and isolate nonadherent cells grown in suspension because cells grown in monolayers will rapidly reattach to surfaces if suspended in solution. We explored methods to slow cell reattachment that are also compatible with high-fidelity PCR. METHODS Using HeLa cells grown on plates and suspended after trypsinization, we measured the efficiency of capture by retention and movement of the cell by the laser. Success for removing a captured cell by pipette was determined by PCR amplification of the 5S rRNA gene. After optimizing PCR amplification of a 2049-bp region of the p53 gene, we determined PCR fidelity by DNA sequencing. RESULTS Addition of bovine serum albumin to suspended cells slowed reattachment from seconds to minutes and allowed efficient trapping. The success rate of removing a cell from the trap by pipette to a PCR tube was 91.5%. The 5S PCR assay also revealed that DNA and RNA that copurify with polymerases could give false-positive results. Sequence analysis of four clones derived from a single cell showed only three polymerase errors in 7200 bp of sequence read and revealed difficulties in reading the correct number in a run of 16 A:T. Comparison of the HeLa and wild-type human sequences revealed several previously unreported base differences and an (A:T)(n) length polymorphism in p53 introns. CONCLUSIONS These results represent the first use of optical trapping on adherent cells and demonstrate the high accuracy of DNA sequencing that can be achieved from a single cell.
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Affiliation(s)
- James M Gale
- Department of Cell Biology and Physiology, Steve Schiff Center for Skin Cancer University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.
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30
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Haruff H, Munakata-Marr J, Marr D. Directed bacterial surface attachment via optical trapping. Colloids Surf B Biointerfaces 2003. [DOI: 10.1016/s0927-7765(02)00069-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Rohrbach A, Stelzer EHK. Trapping forces, force constants, and potential depths for dielectric spheres in the presence of spherical aberrations. APPLIED OPTICS 2002; 41:2494-507. [PMID: 12009161 DOI: 10.1364/ao.41.002494] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
We present and verify a theoretical model that predicts trapping forces (escape forces), force constants (trap stiffnesses), and trapping potential depths for dielectric spheres with diameters smaller than or equal to the wavelength of the trapping light. Optical forces can be calculated for arbitrary incident light distributions with a two-component approach that determines the gradient and the scattering force separately. We investigate the influence of spherical aberrations that are due to refractive-index mismatch on the maximum trapping force, the force constant, and the potential depth of a trap, which are important for optical tweezer applications. The relationships between the three parameters are explained and studied for different degrees of spherical aberration and various spheres (refractive indices n(s) = 1.39-1.57, radii a = 0.1-0.5 microm, lambda(0) = 1.064 microm). We find that all three parameters decrease when the distance to the coverslip increases. Effects that could make the interpretation of experimental results ambiguous are simulated and explained. Computational results are compared with the experimental data found in the literature. A good coincidence can be established.
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32
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Mohanty SK, Rapp A, Monajembashi S, Gupta PK, Greulich KO. Comet assay measurements of DNA damage in cells by laser microbeams and trapping beams with wavelengths spanning a range of 308 nm to 1064 nm. Radiat Res 2002; 157:378-85. [PMID: 11893239 DOI: 10.1667/0033-7587(2002)157[0378:camodd]2.0.co;2] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
DNA damage induced in NC37 lymphoblasts by optical tweezers with a continuous-wave Ti:sapphire laser and a continuous-wave Nd:YAG laser (60-240 mW; 10-50 TJ/m2; 30-120 s irradiation) was studied with the comet assay, a single-cell technique used to detect DNA fragmentation in genomes. Over the wavelength range of 750-1064 nm, the amount of damage in DNA peaks at around 760 nm, with the fraction of DNA damage within the range of 750-780 nm being a factor of two larger than the fraction of DNA damage within the range of 800-1064 nm. The variation in DNA damage was not significant over the range of 800-1064 nm. When the logarithm of damage thresholds measured in the present work, as well as values reported previously in the UV range, was plotted as a function of wavelength, a dramatic wavelength dependence became apparent. The damage threshold values can be fitted on two straight lines, one for continuous-wave sources and the other for pulsed sources, irrespective of the type of source used (e.g. classical lamp or laser). The damage threshold around 760 nm falls on the line extrapolated from values for UV-radiation-induced damage, while the data for 800-1064 nm fall on a line that has a different slope. The change in the slope between 320 and 340 nm observed earlier is consistent with a well-known change in DNA-damaging mechanisms. The change observed around 780 nm is therefore suggestive of a further change in the mechanism(s). The data from this work together with our previous measurements provide, to the best of our knowledge, the most comprehensive view available of the DNA damage produced by microfocused light.
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Affiliation(s)
- S K Mohanty
- Biomedical Applications Section, Center for Advanced Technology, Indore, India-452013
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Rohrbach A, Stelzer EH. Optical trapping of dielectric particles in arbitrary fields. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2001; 18:839-853. [PMID: 11318334 DOI: 10.1364/josaa.18.000839] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
We present a new method to calculate trapping forces of dielectric particles with diameters D < or = lambda in arbitrary electromagnetic, time-invariant fields. The two components of the optical force, the gradient force and the scattering force, are determined separately. Both the arbitrary incident field and the scatterer are represented by plane-wave spectra. The scattering force is determined by means of the momentum transfer in either single- or double-scattering processes. Therefore the second-order Born series is evaluated and solved in the frequency domain by Ewald constructions. Numerical results of our two-force-component approach and an established calculation method are compared and show satisfying agreement. Our procedure is applied to investigate axial trapping by focused waves experiencing effects of aperture illumination and refractive-index mismatch.
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Affiliation(s)
- A Rohrbach
- European Molecular Biology Laboratory, Heidelberg, Germany.
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Shirahata Y, Ohkohchi N, Itagak H, Satomi S. New technique for gene transfection using laser irradiation. J Investig Med 2001; 49:184-90. [PMID: 11288759 DOI: 10.2310/6650.2001.34045] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
BACKGROUND We have developed a gene transfection system using laser beams. The principle of this procedure is that a small hole is made in a cell membrane by pulse laser irradiation, and a gene contained in a medium is transferred into the cytoplasm through the hole. This hole disappears immediately with the application of laser irradiation of the appropriate power. METHODS A pulse-wave Nd:YAG laser with a wavelength of 355 nm was used to make a hole in a cell membrane. To trap a cell, a continuous-wave Nd:YAG laser with a wavelength of 1015 nm was used. Plasmids that encode the enhanced green fluorescent protein (EGFP) gene were contained in a medium and transferred to HuH-7 and NIH/3T3 cells with pulse laser irradiation. We evaluated transfection efficiency on the basis of the number of cells that expressed EGFP. Stimulatory protein 2 cells in suspension were fixed using a trapping laser and the neomycin-resistance gene was transfected by pulse laser irradiation. We examined cell proliferation in the selection medium. RESULTS Cells that expressed EGFP were recognized in the group that was irradiated by pulse laser. No cells expressed EGFP without irradiation. Transfection efficiency was approximately 10% at a plasmid concentration of 10.0 microg/mL. At concentrations greater than 20 microg/mL, the transfection rate reached a plateau. We also successfully transfected neomycin-resistance genes to cells floating in suspension after fixation that was achieved with trapping laser irradiation. CONCLUSIONS This method enables us to transfect targeted cells, ie, cells in suspension as well as attached cells, with a simple technique that does not involve harmful vectors. The present method is very useful for gene transfection in cellular biotechnology.
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Affiliation(s)
- Y Shirahata
- Division of Advanced Surgical Science and Technology, Graduate School of Medicine, Tohoku University, Sendai, Japan.
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35
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Grover SC, Skirtach AG, Gauthier RC, Grover CP. Automated single-cell sorting system based on optical trapping. JOURNAL OF BIOMEDICAL OPTICS 2001; 6:14-22. [PMID: 11178576 DOI: 10.1117/1.1333676] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/1999] [Revised: 10/09/2000] [Accepted: 10/25/2000] [Indexed: 05/23/2023]
Abstract
We provide a basis for automated single-cell sorting based on optical trapping and manipulation using human peripheral blood as a model system. A counterpropagating dual-beam optical-trapping configuration is shown theoretically and experimentally to be preferred due to a greater ability to manipulate cells in three dimensions. Theoretical analysis performed by simulating the propagation of rays through the region containing an erythrocyte (red blood cell) divided into numerous elements confirms experimental results showing that a trapped erythrocyte orients with its longest axis in the direction of propagation of the beam. The single-cell sorting system includes an image-processing system using thresholding, background subtraction, and edge-enhancement algorithms, which allows for the identification of single cells. Erythrocytes have been identified and manipulated into designated volumes using the automated dual-beam trap. Potential applications of automated single-cell sorting, including the incorporation of molecular biology techniques, are discussed.
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Affiliation(s)
- S C Grover
- University of Toronto, Faculty of Medicine, Ontario, Canada
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36
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Zahn M, Renken J, Seeger S. Fluorimetric multiparameter cell assay at the single cell level fabricated by optical tweezers. FEBS Lett 1999; 443:337-40. [PMID: 10025959 DOI: 10.1016/s0014-5793(98)01693-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
A fluorimetric multi-parameter cell sensor at the single cell level is presented which makes it possible to observe the physiological behavior of different cell lines, different physiological parameters, and statistical data at the same time. Different cell types were immobilized at predefined positions with high accuracy using optical tweezers and adhesion promoting surface layers. The process is applicable to both adherent and non-adherent cells. Coating of the immobilization area with mussel adhesive protein was shown to be essential for the process. Intracellular proton and calcium concentrations in different cell classes were simultaneously imaged and the specific activation of T lymphocytes was demonstrated. This method should be especially useful for drug screening due to the small sample volume and high information density.
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Affiliation(s)
- M Zahn
- Institut für Analytische Chemie, Chemo- und Biosensorik, University of Regensburg, Germany
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37
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Angelova MI, Pouligny B. Trapping and levitation of a dielectric sphere with off-centred Gaussian beams. I. Experimental. ACTA ACUST UNITED AC 1999. [DOI: 10.1088/0963-9659/2/4/001] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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38
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Felgner H, Grolig F, Müller O, Schliwa M. In vivo manipulation of internal cell organelles. Methods Cell Biol 1997; 55:195-203. [PMID: 9352518 DOI: 10.1016/s0091-679x(08)60409-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- H Felgner
- Adolf-Butenandt-Institut, University of Munich, Germany
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Abstract
The techniques of optical trapping and manipulation of neutral particles by lasers provide unique means to control the dynamics of small particles. These new experimental methods have played a revolutionary role in areas of the physical and biological sciences. This paper reviews the early developments in the field leading to the demonstration of cooling and trapping of neutral atoms in atomic physics and to the first use of optical tweezers traps in biology. Some further major achievements of these rapidly developing methods also are considered.
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Affiliation(s)
- A Ashkin
- Research Department, Bell Laboratories, Lucent Technologies (retired), Room 4B-405, Holmdel, NJ 07733-3030, USA
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40
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Fällman E, Axner O. Design for fully steerable dual-trap optical tweezers. APPLIED OPTICS 1997; 36:2107-13. [PMID: 18253180 DOI: 10.1364/ao.36.002107] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
A design for complete beam steering (in three dimensions) of one or two optical tweezers traps is presented. The two most important requirements for efficient and stable movement of an optical trap are identified. A detailed recipe for the construction of a movable optical tweezers trap that fulfills these requirements is given (exemplified with an inverted microscope). The system has been found to allow for precise and free movements of both traps in all three dimensions in a dual-trap optical tweezers configuration and to be robust and reliable, as well as forgiving of small misalignments in the optical system.
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41
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Liu Y, Sonek GJ, Berns MW, Tromberg BJ. Physiological monitoring of optically trapped cells: assessing the effects of confinement by 1064-nm laser tweezers using microfluorometry. Biophys J 1996; 71:2158-67. [PMID: 8889192 PMCID: PMC1233684 DOI: 10.1016/s0006-3495(96)79417-1] [Citation(s) in RCA: 153] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
We report the results of microfluorometric measurements of physiological changes in optically trapped immotile Chinese hamster ovary cells (CHOs) and motile human sperm cells under continuous-wave (CW) and pulsed-mode trapping conditions at 1064 nm. The fluorescence spectra derived from the exogenous fluorescent probes laurdan, acridine orange, propidium iodide, and Snarf are used to assess the effects of optical confinement with respect to temperature, DNA structure, cell viability, and intracellular pH, respectively. In the latter three cases, fluorescence is excited via a two-photon process, using a CW laser trap as the fluorescence excitation source. An average temperature increase of < 0.1 +/- 0.30 degrees C/100 mW is measured for cells when held stationary with CW optical tweezers at powers of up to 400 mW. The same trapping conditions do not appear to alter DNA structure or cellular pH. In contrast, a pulsed 1064-nm laser trap (100-ns pulses at 40 microJ/pulse and average power of 40 mW) produced significant fluorescence spectral alterations in acridine orange, perhaps because of thermally induced DNA structural changes or laser-induced multiphoton processes. The techniques and results presented herein demonstrate the ability to perform in situ monitoring of cellular physiology during CW and pulsed laser trapping, and should prove useful in studying mechanisms by which optical tweezers and microbeams perturb metabolic function and cellular viability.
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Affiliation(s)
- Y Liu
- Department of Electrical and Computer Engineering, University of California, Irvine 92717, USA
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Palumbo G, Caruso M, Crescenzi E, Tecce MF, Roberti G, Colasanti A. Targeted gene transfer in eucaryotic cells by dye-assisted laser optoporation. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 1996; 36:41-6. [PMID: 8988610 DOI: 10.1016/s1011-1344(96)07335-6] [Citation(s) in RCA: 80] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The blue beam of an Argon laser (488 nm) has been focused on the cell membrane in the presence of phenol-red, an usual component of cell culture media, through a 100 x objective. At the site of the beam impact, due probably to local temperature changes, the cell membrane modifies its permeability. As a consequence of the hit, circular areas, whose radius may be apparently regulated by changing the irradiation time and/or the radiation intensity (energy), appear on the wall, last for a short time and fade spontaneously within 1-2 minutes. No evident sings of cell injury or hurt have been observed afterward. Plasmid DNA, purposely added to culture fluid, easily slips in the cytoplasm; utilizing such approach, thereafter indicated as "optoporation', we have successfully transfected two genes, namely beta-galactosidase and chloramphenicol-acetyl-transferase in murine NIH3T3 fibroblasts. Therefore optoporation represents an additional procedure for gene transfer with several advantages over already available methods: (1) it only takes advantage of the presence of phenol-red, a normal cell medium component, with no need of addition of extraneous substances; (2) it is a very mild treatment virtually suitable for any cell type and (3) it allows transfection of selected cells even in the presence of cells of different type (providing that they are morphologically distinguishable).
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Affiliation(s)
- G Palumbo
- Dipartimento di Biologia e Patologia Molecolare e Cellulare L. Califano, Naples, Italy.
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43
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Endlich N, Greulich KO. Observation and manipulation of different structural variants of individual cation-DNA complexes in the light microscope. J Biotechnol 1995; 41:149-53. [PMID: 7654347 DOI: 10.1016/0168-1656(95)00008-e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Using different preparation protocols, different structures consisting of individual cation-DNA complexes are obtained. Vigorous mixing provides globular complexes, with different degrees of packing when poly-L-lysine or histone H1 is the cation. When hydrodynamic shearing is minimized by gentle handling, molecular networks or single cable like structures can be obtained. After 4',6-diamidino-2-phenyl indole (DAPI) fluorescence staining as well as with bright-field microscopy, the cables can be directly visualized in the light microscope. Using a pulsed ultraviolet laser coupled into the microscope (a laser microbeam) stretches of complex can be cut out from networks of poly-L-lysine-DNA complexes which may serve as models for highly extended chromosomes.
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Affiliation(s)
- N Endlich
- Phys. Chemie Institut, Universität Heidelberg, Germany
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44
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Abstract
The contact-free, non-invasive manipulation provided by optical trapping enables us not only to measure physical parameters of individual cells but also to initiate specific responses in a given cell in a defined environment.
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Affiliation(s)
- M Uchida
- Photodynamics Research Center, Institute of Physical and Chemical Research (RIKEN), Miyagi, Japan
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45
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Dai J, Sheetz MP. Mechanical properties of neuronal growth cone membranes studied by tether formation with laser optical tweezers. Biophys J 1995; 68:988-96. [PMID: 7756561 PMCID: PMC1281822 DOI: 10.1016/s0006-3495(95)80274-2] [Citation(s) in RCA: 254] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
Many cell phenomena involve major morphological changes, particularly in mitosis and the process of cell migration. For cells or neuronal growth cones to migrate, they must extend the leading edge of the plasma membrane as a lamellipodium or filopodium. During extension of filopodia, membrane must move across the surface creating shear and flow. Intracellular biochemical processes driving extension must work against the membrane mechanical properties, but the forces required to extend growth cones have not been measured. In this paper, laser optical tweezers and a nanometer-level analysis system were used to measure the neuronal growth cone membrane mechanical properties through the extension of filopodia-like tethers with IgG-coated beads. Although the probability of a bead attaching to the membrane was constant irrespective of treatment; the probability of forming a tether with a constant force increased dramatically with cytochalasin B or D and dimethylsulfoxide (DMSO). These are treatments that alter the organization of the actin cytoskeleton. The force required to hold a tether at zero velocity (F0) was greater than forces generated by single molecular motors, kinesin and myosin; and F0 decreased with cytochalasin B or D and DMSO in correlation with the changes in the probability of tether formation. The force of the tether on the bead increased linearly with the velocity of tether elongation. From the dependency of tether force on velocity of tether formation, we calculated a parameter related to membrane viscosity, which decreased with cytochalasin B or D, ATP depletion, nocodazole, and DMSO. These results indicate that the actin cytoskeleton affects the membrane mechanical properties, including the force required for membrane extension and the viscoelastic behavior.
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Affiliation(s)
- J Dai
- Department of Cell Biology, Duke University Medical Center, Durham, North Carolina 27710, USA
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46
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Ponelies N, Scheef J, Harim A, Leitz G, Greulich KO. Laser micromanipulators for biotechnology and genome research. J Biotechnol 1994; 35:109-20. [PMID: 7765052 DOI: 10.1016/0168-1656(94)90030-2] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The use of lasers for complete micromanipulation of metaphase chromosomes, cells and subcellular structures is reviewed. DNA probes from single microdissected chromosome segments can be prepared using Alu or Adaptor PCR. In plant biotechnology, laser microsurgery can be used to prepare non-enzymatically protoplasts from Medicago sativa. Microgravity can be simulated in the alga Chara by lifting intracellular gravity transmitting elements with the optical tweezers.
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Affiliation(s)
- N Ponelies
- Phys. Chemie Institut, Hiedelberg, Germany
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47
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Abstract
Still almost unbelievable, but true: light exerts force. With these forces it is indeed possible to catch and move cells or small particles and microsurgically to process them without any mechanical contact. As if by magic, objects are moved via focused laser light.
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48
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Affiliation(s)
- R M Simmons
- MRC Muscle & Cell Motility Unit, Randall Institute, King's College London, 26-29 Drury Lane, London, WC2B 5RL, UK
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49
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Schut TC, Schipper EF, de Grooth BG, Greve J. Optical-trapping micromanipulation using 780-nm diode lasers. OPTICS LETTERS 1993; 18:447-449. [PMID: 19802164 DOI: 10.1364/ol.18.000447] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
We have designed and implemented an optical-trapping configuration that uses near-infrared laser diodes. The highly divergent output beam of the diode laser was collimated by using only one aspheric compact disc lens. The resulting output beams are astigmatic and elliptic and have a flat, non-Gaussian intensity profile. Calculations and measurements were performed to investigate the influence of this profile on the trapping forces. The results show that use of a laser diode, collimated with a compact disc lens, provides a near-infrared light source that can be used for optical trapping. The light source is compact and relatively cheap and can be easily incorporated into an existing microscope.
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Abstract
Microscopic objects, including biological material, can be remotely manipulated with tightly focused beams of infrared laser light. The use of optical traps, or 'optical tweezers', holds great promise for noninvasive micromanipulation and mechanical measurement in cell biology. Optical tweezers are the 'tractor beams' of today's technology.
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Affiliation(s)
- S M Block
- Rowland Institute for Science, Cambridge, Massachusetts 02142
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