1
|
Pohle J, Signer J, Eccard JA, Dammhahn M, Schlägel UE. How to account for behavioral states in step-selection analysis: a model comparison. PeerJ 2024; 12:e16509. [PMID: 38426131 PMCID: PMC10903358 DOI: 10.7717/peerj.16509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 11/01/2023] [Indexed: 03/02/2024] Open
Abstract
Step-selection models are widely used to study animals' fine-scale habitat selection based on movement data. Resource preferences and movement patterns, however, often depend on the animal's unobserved behavioral states, such as resting or foraging. As this is ignored in standard (integrated) step-selection analyses (SSA, iSSA), different approaches have emerged to account for such states in the analysis. The performance of these approaches and the consequences of ignoring the states in step-selection analysis, however, have rarely been quantified. We evaluate the recent idea of combining iSSAs with hidden Markov models (HMMs), which allows for a joint estimation of the unobserved behavioral states and the associated state-dependent habitat selection. Besides theoretical considerations, we use an extensive simulation study and a case study on fine-scale interactions of simultaneously tracked bank voles (Myodes glareolus) to compare this HMM-iSSA empirically to both the standard and a widely used classification-based iSSA (i.e., a two-step approach based on a separate prior state classification). Moreover, to facilitate its use, we implemented the basic HMM-iSSA approach in the R package HMMiSSA available on GitHub.
Collapse
Affiliation(s)
- Jennifer Pohle
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Johannes Signer
- Wildlife Sciences, Faculty of Forest Sciences and Forest Ecology, University of Goettingen, Göttingen, Germany
| | - Jana A. Eccard
- Animal Ecology, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Melanie Dammhahn
- Department of Behavioural Biology, University of Münster, Münster, Germany
| | - Ulrike E. Schlägel
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| |
Collapse
|
2
|
Shaw P, Ogada D, Dunn L, Buij R, Amar A, Garbett R, Herremans M, Virani MZ, Kendall CJ, Croes BM, Odino M, Kapila S, Wairasho P, Rutz C, Botha A, Gallo-Orsi U, Murn C, Maude G, Thomsett S. African savanna raptors show evidence of widespread population collapse and a growing dependence on protected areas. Nat Ecol Evol 2024; 8:45-56. [PMID: 38177689 PMCID: PMC10781635 DOI: 10.1038/s41559-023-02236-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 09/14/2023] [Indexed: 01/06/2024]
Abstract
The conversion of natural habitats to farmland is a major cause of biodiversity loss and poses the greatest extinction risk to birds worldwide. Tropical raptors are of particular concern, being relatively slow-breeding apex predators and scavengers, whose disappearance can trigger extensive cascading effects. Many of Africa's raptors are at considerable risk from habitat conversion, prey-base depletion and persecution, driven principally by human population expansion. Here we describe multiregional trends among 42 African raptor species, 88% of which have declined over a ca. 20-40-yr period, with 69% exceeding the International Union for Conservation of Nature criteria classifying species at risk of extinction. Large raptors had experienced significantly steeper declines than smaller species, and this disparity was more pronounced on unprotected land. Declines were greater in West Africa than elsewhere, and more than twice as severe outside of protected areas (PAs) than within. Worryingly, species suffering the steepest declines had become significantly more dependent on PAs, demonstrating the importance of expanding conservation areas to cover 30% of land by 2030-a key target agreed at the UN Convention on Biological Diversity COP15. Our findings also highlight the significance of a recent African-led proposal to strengthen PA management-initiatives considered fundamental to safeguarding global biodiversity, ecosystem functioning and climate resilience.
Collapse
Affiliation(s)
- Phil Shaw
- Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, UK.
| | - Darcy Ogada
- The Peregrine Fund, Boise, ID, USA.
- National Museums of Kenya, Nairobi, Kenya.
| | | | - Ralph Buij
- The Peregrine Fund, Boise, ID, USA
- Animal Ecology Group, Wageningen University and Research, Wageningen, the Netherlands
| | - Arjun Amar
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Cape Town, South Africa
| | - Rebecca Garbett
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Cape Town, South Africa
- Southern Africa Leopard Project, Panthera, Cape Town, Western Cape, South Africa
| | | | - Munir Z Virani
- Mohamed Bin Zayed Raptor Conservation Fund, Abu Dhabi, United Arab Emirates
| | - Corinne J Kendall
- North Carolina Zoo, Asheboro, NC, USA
- Department of Applied Ecology, North Carolina State University, Raleigh, NC, USA
| | - Barbara M Croes
- Institute of Environmental Sciences, Leiden University, Leiden, the Netherlands
| | - Martin Odino
- The Peregrine Fund, Boise, ID, USA
- National Museums of Kenya, Nairobi, Kenya
| | - Shiv Kapila
- The Kenya Bird of Prey Trust, Naivasha, Kenya
| | | | - Christian Rutz
- Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, UK
| | - André Botha
- Endangered Wildlife Trust, Gauteng, South Africa
| | - Umberto Gallo-Orsi
- Raptors MOU Coordinating Unit, Convention on Migratory Species (CMS), Abu Dhabi, United Arab Emirates
| | - Campbell Murn
- Hawk Conservancy Trust, Andover, Hampshire, UK
- School of Biological Sciences, University of Reading, Berkshire, UK
| | | | | |
Collapse
|
3
|
Cervantes F, Murgatroyd M, Allan DG, Farwig N, Kemp R, Krüger S, Maude G, Mendelsohn J, Rösner S, Schabo DG, Tate G, Wolter K, Amar A. A utilization distribution for the global population of Cape Vultures (Gyps coprotheres) to guide wind energy development. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2023; 33:e2809. [PMID: 36691259 DOI: 10.1002/eap.2809] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 11/18/2022] [Accepted: 12/01/2022] [Indexed: 06/17/2023]
Abstract
The rapid development of wind energy in southern Africa represents an additional threat to the already fragile populations of African vultures. The distribution of the vulnerable Cape Vulture Gyps coprotheres overlaps considerably with wind energy development areas in South Africa, creating conflicts that can hinder both vulture conservation and sustainable energy development. To help address this conflict and aid in the safe placement of wind energy facilities, we map the utilization distribution (UD) of this species across its distributional range. Using tracking data from 68 Cape Vultures collected over the last 20 years, we develop a spatially explicit habitat use model to estimate the expected UDs around known colonies. Scaling the UDs by the number of vultures expected to use each of the colonies, we estimate the Cape Vulture population utilization distribution (PUD) and determine its exposure to wind farm impacts. To complement our results, we model the probability of a vulture flying within the rotor sweep area of a wind turbine throughout the species range and use this to identify areas that are particularly prone to collisions. Overall, our estimated PUD correlates well with reporting rates of the species from the Southern African Bird Atlas Project, currently used to assess potential overlap between Cape Vultures and wind energy developments, but it adds important benefits, such as providing a spatial gradient of activity estimates over the entire species range. We illustrate the application of our maps by analyzing the exposure of Cape Vultures in the Renewable Energy Development Zones (REDZs) in South Africa. This application is a scalable procedure that can be applied at different planning phases, from strategic, nationwide planning to project-level assessments.
Collapse
Affiliation(s)
- Francisco Cervantes
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
| | - Megan Murgatroyd
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
- HawkWatch International, Salt Lake City, Utah, USA
- Birds of Prey Programme, Endangered Wildlife Trust, Midrand, South Africa
| | | | - Nina Farwig
- Faculty of Biology, Conservation Ecology, Philipps-University Marburg, Marburg, Germany
| | | | - Sonja Krüger
- Ezemvelo KwaZulu-Natal Wildlife, Cascades, South Africa
- Centre for Functional Biodiversity, School of Life Sciences, University of KwaZulu-Natal, Scottsville, South Africa
| | | | | | - Sascha Rösner
- Faculty of Biology, Conservation Ecology, Philipps-University Marburg, Marburg, Germany
| | - Dana G Schabo
- Faculty of Biology, Conservation Ecology, Philipps-University Marburg, Marburg, Germany
| | - Gareth Tate
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
- Birds of Prey Programme, Endangered Wildlife Trust, Midrand, South Africa
| | | | - Arjun Amar
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
| |
Collapse
|