Monitoring individual tree-based change with airborne lidar

Tracking tree demography and forest dynamics at scale using remote sensing

Capturing how tree growth and survival vary through space and time is critical to understanding the structure and dynamics of tree-dominated ecosystems. However, characterising demographic processes at scale is inherently challenging, as trees are slow-growing, long-lived and cover vast expanses of land. We used repeat airborne laser scanning data acquired across 25 km2 of semi-arid, old-growth temperate woodland in Western Australia to track the height growth, crown expansion and mortality of 42 213 individual trees over 9 yr. We found that demographic rates are constrained by a combination of tree size, competition and topography. After initially investing in height growth, trees progressively shifted to crown expansion as they grew larger, while mortality risk decreased considerably with size. Across the landscape, both tree growth and survival increased with topographic wetness, resulting in vegetation patterns that are strongly spatially structured. Moreover, biomass gains from woody growth generally outpaced losses from mortality, suggesting these old-growth woodlands remain a net carbon sink in the absence of wildfires. Our study sheds new light on the processes that shape the dynamics and spatial structure of semi-arid woody ecosystems and provides a roadmap for using emerging remote sensing technologies to track tree demography at scale.

Cross-Comparison of Individual Tree Detection Methods Using Low and High Pulse Density Airborne Laser Scanning Data

Numerous individual tree detection (ITD) methods have been developed for use with airborne laser scanning (ALS) data to provide tree-scale forest inventories across large spatial extents. Despite the growing number of methods, relatively few have been comparatively assessed using a single benchmark forest inventory validation dataset, limiting their operational application. In this study, we assessed seven ITD methods, representing three common approaches (point-cloud-based, raster-based, hybrid), across coniferous forest stands with diverse structure and composition to understand how ITD and height measurement accuracy vary with method, input parameters and data, and stand density. There was little variability in accuracy between the ITD methods where the average F-score and standard deviation (±SD) were 0.47 ± 0.03 using a lower pulse density ALS dataset with an average of 8 pulses per square meter (ppm2) and 0.50 ± 0.02 using a higher pulse density ALS dataset with an average of 22 ppm2. Using higher ALS pulse density data produced higher ITD accuracies (F-score increase of 10–13%) in some of the methods versus more modest gains in other methods (F-score increase of 1–3%). Omission errors were strongly related with stand density and largely consisted of suppressed trees underneath the dominant canopy. Simple canopy height model (CHM)-based methods that utilized fixed-size local maximum filters had the lowest omission errors for trees across all canopy positions. ITD accuracy had large intra-method variation depending on input parameters; however, the highest accuracies were obtained when parameters such as search window size and spacing thresholds were equal to or less than the average crown diameter of trees in the study area. All ITD methods produced height measurements for the detected trees that had low RMSE (<1.1 m) and bias (<0.5 m). Overall, the results from this study may help guide end-users with ITD method application and highlight future ITD method improvements.

LiDAR as a Tool for Assessing Change in Vertical Fuel Continuity Following Restoration

The need for fuel reduction treatments and the restoration of ecosystem resilience has become widespread in forest management given fuel accumulation across many forested landscapes and a growing risk of high-intensity wildfire. However, there has been little research on methods of assessing the effectiveness of those treatments at landscape scales. Most research has involved small-scale opportunistic case studies focused on incidents where wildland fires encountered recent restoration projects. It is important to assess whether restoration practices are successful at a landscape scale so improvements may be made as treatments are expanded and their individual effectiveness ages. This study used LiDAR acquisitions taken before and after a large-scale forest restoration project in the Malheur National Forest in eastern Oregon to broadly assess changes in fuel structure. The results showed some areas where treatments appeared effective, and other areas where treatments appeared less effective. While some aspects could be modified to improve accuracy, the methods investigated in this study offer forest managers a new option for evaluating the effectiveness of fuel reduction treatments in reducing potential damage due to wildland fire.

What Factors Shape Spatial Distribution of Biomass in Riparian Forests? Insights from a LiDAR Survey over a Large Area

Riparian ecosystems are home to a remarkable biodiversity, but have been degraded in many regions of the world. Vegetation biomass is central to several key functions of riparian systems. It is influenced by multiple factors, such as soil waterlogging, sediment input, flood, and human disturbance. However, knowledge is lacking on how these factors interact to shape spatial distribution of biomass in riparian forests. In this study, LiDAR data were used in an individual tree approach to map the aboveground biomass in riparian forests along 200 km of rivers in the Meuse catchment, in southern Belgium (Western Europe). Two approaches were tested, relying either on a LiDAR Canopy Height Model alone or in conjunction with a LiDAR point cloud. Cross-validated biomass relative mean square error for 0.3 ha plots were, respectively, 27% and 22% for the two approaches. Spatial distribution of biomass patterns were driven by parcel history (and particularly vegetation age), followed by land use and topographical or geomorphological variables. Overall, anthropogenic factors were dominant over natural factors. However, vegetation patches located in the lower parts of the riparian zone exhibited a lower biomass than those in higher locations at the same age, presumably due to a combination of a more intense disturbance regime and more limiting growing conditions in the lower parts of the riparian zone. Similar approaches to ours could be deployed in other regions in order to better understand how biomass distribution patterns vary according to the climatic, geological or cultural contexts.

A remote sensing derived data set of 100 million individual tree crowns for the National Ecological Observatory Network

Forests provide biodiversity, ecosystem, and economic services. Information on individual trees is important for understanding forest ecosystems but obtaining individual-level data at broad scales is challenging due to the costs and logistics of data collection. While advances in remote sensing techniques allow surveys of individual trees at unprecedented extents, there remain technical challenges in turning sensor data into tangible information. Using deep learning methods, we produced an open-source data set of individual-level crown estimates for 100 million trees at 37 sites across the United States surveyed by the National Ecological Observatory Network's Airborne Observation Platform. Each canopy tree crown is represented by a rectangular bounding box and includes information on the height, crown area, and spatial location of the tree. These data have the potential to drive significant expansion of individual-level research on trees by facilitating both regional analyses and cross-region comparisons encompassing forest types from most of the United States.

A Density-Based Algorithm for the Detection of Individual Trees from LiDAR Data

Nowadays, LiDAR is widely used for individual tree detection, usually providing higher accuracy in coniferous stands than in deciduous ones, where the rounded-crown, the presence of understory vegetation, and the random spatial tree distribution may affect the identification algorithms. In this work, we propose a novel algorithm that aims to overcome these difficulties and yield the coordinates and the height of the individual trees on the basis of the point density features of the input point cloud. The algorithm was tested on twelve deciduous areas, assessing its performance on both regular-patterned plantations and stands with randomly distributed trees. For all cases, the algorithm provides high accuracy tree count (F-score > 0.7) and satisfying stem locations (position error around 1.0 m). In comparison to other common tools, the algorithm is weakly sensitive to the parameter setup and can be applied with little knowledge of the study site, thus reducing the effort and cost of field campaigns. Furthermore, it demonstrates to require just 2 points·m−2 as minimum point density, allowing for the analysis of low-density point clouds. Despite its simplicity, it may set the basis for more complex tools, such as those for crown segmentation or biomass computation, with potential applications in forest modeling and management.

From Drones to Phenotype: Using UAV-LiDAR to Detect Species and Provenance Variation in Tree Productivity and Structure

The use of unmanned aerial vehicles (UAVs) for remote sensing of natural environments has increased over the last decade. However, applications of this technology for high-throughput individual tree phenotyping in a quantitative genetic framework are rare. We here demonstrate a two-phased analytical pipeline that rapidly phenotypes and filters for genetic signals in traditional and novel tree productivity and architectural traits derived from ultra-dense light detection and ranging (LiDAR) point clouds. The goal of this study was rapidly phenotype individual trees to understand the genetic basis of ecologically and economically significant traits important for guiding the management of natural resources. Individual tree point clouds were acquired using UAV-LiDAR captured over a multi-provenance common-garden restoration field trial located in Tasmania, Australia, established using two eucalypt species (Eucalyptus pauciflora and Eucalyptus tenuiramis). Twenty-five tree productivity and architectural traits were calculated for each individual tree point cloud. The first phase of the analytical pipeline found significant species differences in 13 of the 25 derived traits, revealing key structural differences in productivity and crown architecture between species. The second phase investigated the within species variation in the same 25 structural traits. Significant provenance variation was detected for 20 structural traits in E. pauciflora and 10 in E. tenuiramis, with signals of divergent selection found for 11 and 7 traits, respectively, putatively driven by the home-site environment shaping the observed variation. Our results highlight the genetic-based diversity within and between species for traits important for forest structure, such as crown density and structural complexity. As species and provenances are being increasingly translocated across the landscape to mitigate the effects of rapid climate change, our results that were achieved through rapid phenotyping using UAV-LiDAR, raise the need to understand the functional value of productivity and architectural traits reflecting species and provenance differences in crown structure and the interplay they have on the dependent biotic communities.

Standardizing Ecosystem Morphological Traits from 3D Information Sources

3D-imaging technologies provide measurements of terrestrial and aquatic ecosystems' structure, key for biodiversity studies. However, the practical use of these observations globally faces practical challenges. First, available 3D data are geographically biased, with significant gaps in the tropics. Second, no data source provides, by itself, global coverage at a suitable temporal recurrence. Thus, global monitoring initiatives, such as assessment of essential biodiversity variables (EBVs), will necessarily have to involve the combination of disparate data sets. We propose a standardized framework of ecosystem morphological traits - height, cover, and structural complexity - that could enable monitoring of globally consistent EBVs at regional scales, by flexibly integrating different information sources - satellites, aircrafts, drones, or ground data - allowing global biodiversity targets relating to ecosystem structure to be monitored and regularly reported.

Improving plant allometry by fusing forest models and remote sensing

Allometry determines how tree shape and function scale with each other, related through size. Allometric relationships help scale processes from the individual to the global scale and constitute a core component of vegetation models. Allometric relationships have been expected to emerge from optimisation theory, yet this does not suitably predict empirical data. Here we argue that the fusion of high-resolution data, such as those derived from airborne laser scanning, with individual-based forest modelling offers insight into how plant size contributes to large-scale biogeochemical processes. We review the challenges in allometric scaling, how they can be tackled by advances in data-model fusion, and how individual-based models can serve as data integrators for dynamic global vegetation models.

UAS-GEOBIA Approach to Sapling Identification in Jack Pine Barrens after Fire

Jack pine (pinus banksiana) forests are unique ecosystems controlled by wildfire. Understanding the traits of revegetation after wildfire is important for sustainable forest management, as these forests not only provide economic resources, but also are home to specialized species, like the Kirtland Warbler (Setophaga kirtlandii). Individual tree detection of jack pine saplings after fire events can provide information about an environment’s recovery. Traditional satellite and manned aerial sensors lack the flexibility and spatial resolution required for identifying saplings in early post-fire analysis. Here we evaluated the use of unmanned aerial systems and geographic object-based image analysis for jack pine sapling identification in a region burned during the 2012 Duck Lake Fire in the Upper Peninsula of Michigan. Results of this study indicate that sapling identification accuracies can top 90%, and that accuracy improves with the inclusion of red and near infrared spectral bands. Results also indicated that late season imagery performed best when discriminating between young (<5 years) jack pines and herbaceous ground cover in these environments.