1
|
Gerwin J, Torres-Dowdall J, Brown TF, Meyer A. Expansion and Functional Diversification of Long-Wavelength-Sensitive Opsin in Anabantoid Fishes. J Mol Evol 2024; 92:432-448. [PMID: 38861038 PMCID: PMC11291592 DOI: 10.1007/s00239-024-10181-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 05/25/2024] [Indexed: 06/12/2024]
Abstract
Gene duplication is one of the most important sources of novel genotypic diversity and the subsequent evolution of phenotypic diversity. Determining the evolutionary history and functional changes of duplicated genes is crucial for a comprehensive understanding of adaptive evolution. The evolutionary history of visual opsin genes is very dynamic, with repeated duplication events followed by sub- or neofunctionalization. While duplication of the green-sensitive opsins rh2 is common in teleost fish, fewer cases of multiple duplication events of the red-sensitive opsin lws are known. In this study, we investigate the visual opsin gene repertoire of the anabantoid fishes, focusing on the five lws opsin genes found in the genus Betta. We determine the evolutionary history of the lws opsin gene by taking advantage of whole-genome sequences of nine anabantoid species, including the newly assembled genome of Betta imbellis. Our results show that at least two independent duplications of lws occurred in the Betta lineage. The analysis of amino acid sequences of the lws paralogs of Betta revealed high levels of diversification in four of the seven transmembrane regions of the lws protein. Amino acid substitutions at two key-tuning sites are predicted to lead to differentiation of absorption maxima (λmax) between the paralogs within Betta. Finally, eye transcriptomics of B. splendens at different developmental stages revealed expression shifts between paralogs for all cone opsin classes. The lws genes are expressed according to their relative position in the lws opsin cluster throughout ontogeny. We conclude that temporal collinearity of lws expression might have facilitated subfunctionalization of lws in Betta and teleost opsins in general.
Collapse
Affiliation(s)
- Jan Gerwin
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany
- German Cancer Research Center (DKFZ), Division Signaling and Functional Genomics and Department of Cell and Molecular Biology, Medical Faculty Mannheim, Heidelberg University, Heidelberg, Germany
| | - Julián Torres-Dowdall
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany.
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA.
| | - Thomas F Brown
- Max Planck Institute of Molecular Cellular Biology and Genetics, Dresden, Germany
- Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Axel Meyer
- Zoology and Evolutionary Biology, Department of Biology, University of Konstanz, Konstanz, Germany.
| |
Collapse
|
2
|
Irazábal-González L, Wright DS, Maan ME. Developmental and environmental plasticity in opsin gene expression in Lake Victoria cichlid fish. Evol Dev 2024; 26:e12465. [PMID: 38041513 DOI: 10.1111/ede.12465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 11/13/2023] [Accepted: 11/15/2023] [Indexed: 12/03/2023]
Abstract
In many organisms, sensory abilities develop and evolve according to the changing demands of navigating, foraging, and communication across different environments and life stages. Teleost fish inhabit heterogeneous light environments and exhibit a large diversity in visual system properties among species. Cichlids are a classic example of this diversity; visual system variation is generated by different tuning mechanisms that involve both genetic factors and phenotypic plasticity. Here, we document the developmental progression of visual pigment gene expression in Lake Victoria cichlids and test if these patterns are influenced by variation in light conditions. We reared two sister species of Pundamilia to adulthood in two distinct visual conditions that resemble the light environments that they naturally inhabit in Lake Victoria. We also included interspecific first-generation hybrids. We focused on the four opsins that are expressed in Pundamilia adults (using real-time quantitative polymerase chain reaction (RT-qPCR)) (SWS2B, SWS2A, RH2A, and LWS) at 17 time points. We find that opsin expression profiles progress from shorter-wavelength sensitive opsins to longer-wavelength sensitive opsins with increasing age, in both species and their hybrids. The developmental trajectories of opsin expression also responded plastically to the visual conditions. Developmental and environmental plasticity in opsin expression may provide an important stepping stone in the evolution of cichlid visual system diversity.
Collapse
Affiliation(s)
- Lucia Irazábal-González
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Daniel S Wright
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Martine E Maan
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| |
Collapse
|
3
|
Bahiense RN, Costa LS, de Oliveira Guilherme H, de Oliveira CG, Prado VGL, Fortes-Silva R, Perez Ribeiro PA. Feeding and locomotor rhythm of the ornamental cichlid fish Amatitlania sp. in different social groups. JOURNAL OF FISH BIOLOGY 2023; 102:340-348. [PMID: 36401827 DOI: 10.1111/jfb.15274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
Abstract
The aim of this study was to evaluate the feeding activity and the rhythm of daily locomotor activity of the convict cichlid (Amatitlania sp.) kept in different social groups under a self-feeding system. A total of 120 animals was distributed among six repetitions of four social groups, as follows: group 1 with one male and one female per tank; group 2 with three males and three females per tank; group 3 with six males per tank; and group 4 with six females per tank. Feeding activity (FA) and locomotor activity (LA) were evaluated using photoelectric presence-sensors connected to automatic feeders. The fish were fed a commercial extruded diet (46% crude protein and 3600 kcal kg-1 of digestible energy). Animal growth was evaluated for all groups. After 30 days of experimentation, the fish stabilized their demands by adjusting their consumption. Amatitlania sp. showed predominantly diurnal FA and LA. All groups showed a peak of activity when the light was turned on and when it was turned off. In summary, FA and LA of Amatitlania sp. are predominantly diurnal and independent of social group. Pairs and groups of males and females together consume less food in relation to groups of one sex or the other due to reproductive behaviour. On the other hand, groups of only males or females consume more food because they lack reproductive stimuli and thus prioritize growth. These results may support good feeding management practices for this ornamental cichlid. Studies relating feeding behaviour with different social groups are of great importance for determining effective feeding strategies for this species in captivity. Thus, such a study assists in a more efficient production of Amatitlania sp.
Collapse
Affiliation(s)
- Raphael Nogueira Bahiense
- Department of Animal Science, Aquaculture Laboratory, Federal University of Minas Gerais, School of Veterinary Science, Belo Horizonte, Brazil
| | | | - Helder de Oliveira Guilherme
- Department of Animal Science, Aquaculture Laboratory, Federal University of Minas Gerais, School of Veterinary Science, Belo Horizonte, Brazil
| | | | - Verônica Guimarães Landa Prado
- Department of Animal Science, Aquaculture Laboratory, Federal University of Minas Gerais, School of Veterinary Science, Belo Horizonte, Brazil
| | | | - Paula Adriane Perez Ribeiro
- Department of Animal Science, Aquaculture Laboratory, Federal University of Minas Gerais, School of Veterinary Science, Belo Horizonte, Brazil
| |
Collapse
|
4
|
Salgado D, Mariluz BR, Araujo M, Lorena J, Perez LN, Ribeiro RDL, Sousa JDF, Schneider PN. Light-induced shifts in opsin gene expression in the four-eyed fish Anableps anableps. Front Neurosci 2022; 16:995469. [PMID: 36248668 PMCID: PMC9556854 DOI: 10.3389/fnins.2022.995469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 09/08/2022] [Indexed: 11/13/2022] Open
Abstract
The development of the vertebrate eye is a complex process orchestrated by several conserved transcriptional and signaling regulators. Aside from partial or complete loss, examples of exceptional modifications to this intricate organ are scarce. The unique eye of the four-eyed fish Anableps anableps is composed of duplicated corneas and pupils, as well as specialized retina regions associated with simultaneous aerial and aquatic vision. In a previous transcriptomic study of the A. anableps developing eye we identified expression of twenty non-visual and eleven visual opsin genes. Here, we surveyed the expression territories of three non-visual melanopsins genes (opn4×1, opn4×2, opn4m3), one teleost multiple tissue opsin (tmt1b) and two visual opsins (lws and rh2-1) in dorsal and ventral retinas. Our data showed that asymmetry of non-visual opsin expression is only established after birth. During embryonic development, while inside pregnant females, the expression of opn4×1, opn4×2, and tmt1b spans the whole retina. In juvenile fish (post birth), the expression of opn4×1, opn4×2, opn4m3, and tmt1b genes becomes restricted to the ventral retina, which receives aerial light. Raising juvenile fish in clear water instead of the murky waters found in its natural habitat is sufficient to change gene expression territories of opn4×1, opn4×2, opn4m3, tmt1b, and rh2-1, demonstrating that different lighting conditions can shift opsin expression and potentially contribute to changes in spectral sensitivity in the four eyed fish.
Collapse
Affiliation(s)
- Daniele Salgado
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Bertha R. Mariluz
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Maysa Araujo
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
| | - Jamily Lorena
- Department of Integrative Biology, Michigan State University, East Lansing, MI, United States
| | - Louise N. Perez
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
| | | | - Josane de F. Sousa
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
| | - Patricia N. Schneider
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
- *Correspondence: Patricia N. Schneider,
| |
Collapse
|
5
|
Wilwert E, Etienne RS, van de Zande L, Maan ME. Contribution of opsins and chromophores to cone pigment variation across populations of Lake Victoria cichlids. JOURNAL OF FISH BIOLOGY 2022; 101:365-377. [PMID: 34860424 PMCID: PMC9543281 DOI: 10.1111/jfb.14969] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 09/24/2021] [Accepted: 11/25/2021] [Indexed: 06/13/2023]
Abstract
Adaptation to heterogeneous sensory environments has been implicated as a key parameter in speciation. Cichlid fish are a textbook example of divergent visual adaptation, mediated by variation in the sequences and expression levels of cone opsin genes (encoding the protein component of visual pigments). In some vertebrates including fish, visual sensitivity is also tuned by the ratio of vitamin A1 /A2 -derived chromophores (i.e., the light-sensitive component of the visual pigment bound to the opsin protein), where higher proportions of A2 cause a more red-shifted wavelength absorbance. This study explores the variation in chromophore ratios across multiple cichlid populations in Lake Victoria, using as a proxy the expression of the gene Cyp27c1, which has been shown to regulate the conversion of vitamin A1 into vitamin A2 in several vertebrates. This study focuses on sympatric Pundamilia cichlids, where species with blue or red male coloration co-occur at multiple islands but occupy different depths and consequently different visual habitats. In the red species, we found higher cyp27c1 expression in populations from turbid waters than from clear waters, but there was no such pattern in the blue species. Across populations, differences between the sympatric species in cyp27c1 expression had a consistent relationship with species differences in opsin expression patterns, but the red/blue identity reversed between clear and turbid waters. To assess the contribution of heritable vs. environmental causes of variation, we tested whether light manipulations induce a change in cyp27c1 expression in the laboratory. We found that cyp27c1 expression was not influenced by experimental light conditions, suggesting that the observed variation in the wild is due to genetic differences. Nonetheless, compared to other cichlid species, cyp27c1 is expressed at very low levels in Pundamilia, suggesting that it may not be relevant for visual adaptation in this species. Conclusively, establishing the biological importance of this variation requires testing of actual A1 /A2 ratios in the eye, as well as its consequences for visual performance.
Collapse
Affiliation(s)
- Elodie Wilwert
- Groningen Institute for Evolutionary Life Sciences (GELIFES)GroningenThe Netherlands
| | - Rampal S. Etienne
- Groningen Institute for Evolutionary Life Sciences (GELIFES)GroningenThe Netherlands
| | - Louis van de Zande
- Groningen Institute for Evolutionary Life Sciences (GELIFES)GroningenThe Netherlands
| | - Martine E. Maan
- Groningen Institute for Evolutionary Life Sciences (GELIFES)GroningenThe Netherlands
| |
Collapse
|
6
|
Munds RA, Cooper EB, Janiak MC, Lam LG, DeCasien AR, Bauman Surratt S, Montague MJ, Martinez MI, Research Unit CB, Kawamura S, Higham JP, Melin AD. Variation and heritability of retinal cone ratios in a free-ranging population of rhesus macaques. Evolution 2022; 76:1776-1789. [PMID: 35790204 PMCID: PMC9544366 DOI: 10.1111/evo.14552] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 05/03/2022] [Accepted: 05/12/2022] [Indexed: 01/22/2023]
Abstract
A defining feature of catarrhine primates is uniform trichromacy-the ability to distinguish red (long; L), green (medium; M), and blue (short; S) wavelengths of light. Although the tuning of photoreceptors is conserved, the ratio of L:M cones in the retina is variable within and between species, with human cone ratios differing from other catarrhines. Yet, the sources and structure of variation in cone ratios are poorly understood, precluding a broader understanding of color vision variability. Here, we report a large-scale study of a pedigreed population of rhesus macaques (Macaca mulatta). We collected foveal RNA and analyzed opsin gene expression using cDNA and estimated additive genetic variance of cone ratios. The average L:M ratio and standard error was 1.03:1 ± 0.02. There was no age effect, and genetic contribution to variation was negligible. We found marginal sex effects with females having larger ratios than males. S cone ratios (0.143:1 ± 0.002) had significant genetic variance with a heritability estimate of 43% but did not differ between sexes or age groups. Our results contextualize the derived human condition of L-cone dominance and provide new information about the heritability of cone ratios and variation in primate color vision.
Collapse
Affiliation(s)
- Rachel A. Munds
- Department of Anthropology and ArchaeologyUniversity of CalgaryCalgaryABT2N 1N4Canada
| | - Eve B. Cooper
- Department of AnthropologyNew York UniversityNew YorkNew York10003,New York Consortium in Evolutionary PrimatologyNew YorkNew York10460
| | - Mareike C. Janiak
- Department of Anthropology and ArchaeologyUniversity of CalgaryCalgaryABT2N 1N4Canada,Department of AnthropologyNew York UniversityNew YorkNew York10003,School of Science, Engineering and EnvironmentUniversity of SalfordSalfordM5 4NTUnited Kingdom
| | - Linh Gia Lam
- Department of Anthropology and ArchaeologyUniversity of CalgaryCalgaryABT2N 1N4Canada
| | - Alex R. DeCasien
- Department of AnthropologyNew York UniversityNew YorkNew York10003,New York Consortium in Evolutionary PrimatologyNew YorkNew York10460,Section on Developmental NeurogenomicsNational Institute of Mental HealthBethesdaMaryland20892
| | | | - Michael J. Montague
- Department of NeuroscienceUniversity of PennsylvaniaPhiladelphiaPennsylvania19104
| | - Melween I. Martinez
- Caribbean Primate Research CenterUniversity of Puerto RicoSan JuanPuerto Rico00936
| | | | - Shoji Kawamura
- Department of Integrated BiosciencesUniversity of TokyoKashiwa277‐8562Japan
| | - James P. Higham
- Department of AnthropologyNew York UniversityNew YorkNew York10003,New York Consortium in Evolutionary PrimatologyNew YorkNew York10460
| | - Amanda D. Melin
- Department of Anthropology and ArchaeologyUniversity of CalgaryCalgaryABT2N 1N4Canada,Department of Medical GeneticsUniversity of CalgaryCalgaryABT2N 1N4Canada,Alberta Children's Hospital Research InstituteUniversity of CalgaryCalgaryABT2N 1N4Canada
| |
Collapse
|
7
|
Gobbin TP, Tiemersma R, Leone G, Seehausen O, Maan ME. Patterns of ectoparasite infection in wild-caught and laboratory-bred cichlid fish, and their hybrids, implicate extrinsic rather than intrinsic causes of species differences in infection. HYDROBIOLOGIA 2020; 848:3817-3831. [PMID: 34720171 PMCID: PMC8550742 DOI: 10.1007/s10750-020-04423-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 09/07/2020] [Accepted: 09/22/2020] [Indexed: 06/13/2023]
Abstract
Parasite-mediated selection may initiate or enhance differentiation between host populations that are exposed to different parasite infections. Variation in infection among populations may result from differences in host ecology (thereby exposure to certain parasites) and/or intrinsic immunological traits. Species of cichlid fish, even when recently diverged, often differ in parasite infection, but the contributions of intrinsic and extrinsic causes are unknown. Here, we compare infection patterns between two closely related host species from Lake Victoria (genus Pundamilia), using wild-caught and first-generation laboratory-reared fish, as well as laboratory-reared hybrids. Three of the commonest ectoparasite species observed in the wild were also present in the laboratory populations. However, the infection differences between the host species as observed in the wild were not maintained in laboratory conditions. In addition, hybrids did not differ in infection from either parental species. These findings suggest that the observed species differences in infection in the wild might be mainly driven by ecology-related effects (i.e. differential exposure), rather than by intrinsic species differences in immunological traits. Thus, while there is scope for parasite-mediated selection in Pundamilia in the wild, it has apparently not yet generated divergent evolutionary responses and may not enhance assortative mating among closely related species.
Collapse
Affiliation(s)
- Tiziana P. Gobbin
- Division of Aquatic Ecology & Evolution, Institute of Ecology and Evolution, Universitat Bern, Bern, Switzerland
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution and Biogeochemistry, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
| | - Ron Tiemersma
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
| | - Giulia Leone
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
| | - Ole Seehausen
- Division of Aquatic Ecology & Evolution, Institute of Ecology and Evolution, Universitat Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution and Biogeochemistry, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
| | - Martine E. Maan
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
| |
Collapse
|
8
|
Carleton KL, Escobar-Camacho D, Stieb SM, Cortesi F, Marshall NJ. Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes. J Exp Biol 2020; 223:jeb193334. [PMID: 32327561 PMCID: PMC7188444 DOI: 10.1242/jeb.193334] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Among vertebrates, teleost eye diversity exceeds that found in all other groups. Their spectral sensitivities range from ultraviolet to red, and the number of visual pigments varies from 1 to over 40. This variation is correlated with the different ecologies and life histories of fish species, including their variable aquatic habitats: murky lakes, clear oceans, deep seas and turbulent rivers. These ecotopes often change with the season, but fish may also migrate between ecotopes diurnally, seasonally or ontogenetically. To survive in these variable light habitats, fish visual systems have evolved a suite of mechanisms that modulate spectral sensitivities on a range of timescales. These mechanisms include: (1) optical media that filter light, (2) variations in photoreceptor type and size to vary absorbance and sensitivity, and (3) changes in photoreceptor visual pigments to optimize peak sensitivity. The visual pigment changes can result from changes in chromophore or changes to the opsin. Opsin variation results from changes in opsin sequence, opsin expression or co-expression, and opsin gene duplications and losses. Here, we review visual diversity in a number of teleost groups where the structural and molecular mechanisms underlying their spectral sensitivities have been relatively well determined. Although we document considerable variability, this alone does not imply functional difference per se. We therefore highlight the need for more studies that examine species with known sensitivity differences, emphasizing behavioral experiments to test whether such differences actually matter in the execution of visual tasks that are relevant to the fish.
Collapse
Affiliation(s)
- Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | | | - Sara M Stieb
- Centre of Ecology, Evolution and Biogeochemistry, EAWAG Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
- Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| | - Fabio Cortesi
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| | - N Justin Marshall
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| |
Collapse
|