Perspectives in Inorganic Structural Genomics: A Trafficking Route for Copper

Architecture of Easy-to-Synthesize and Superior Probe Based on Aminoquinoline Appended Naphthoquinone: Instant and On-Site Cu2+ Ion Quantification in Real Samples and Unusual Crystal Structure and Logic Gate Operations

Easy-to-synthesize aminoquinoline (AQ) appended naphthoquinone (NQ)-based colorimetric and ratiometric probe (AQNQ) was successfully synthesized in one step with high yield and low cost, and was utilized to supply an effective solution to critical shortcomings encountered in Cu2+ analysis. The structure of AQNQ and its interaction with Cu2+ forming an unusual AQNQ-Cu complex were enlightened with single-crystal X-ray diffraction analysis and different spectroscopic methods. AQNQ-Cu complex is the first Cu2+ containing dinuclear crystal where the octahedral coordination sphere is fulfilled through the coordination of a NQ oxygen atom. AQNQ exhibited long-term stability (more than 1 month), superior probe ability toward Cu2+ with quite fast response (30 s), high selectivity among many ions, and limit of detection of 12.13 ppb that is significantly below the highest amount of Cu2+ allowed in drinking water established by both WHO and EPA. Ratiometric determination of Cu2+ using AQNQ was performed with high recovery and low RSD values for drinking water, tap water, lake water, cherry, and watermelon samples. Colorimetric on-site determination including smartphone and paper strip applications, IMPLICATION, and INHIBIT logic gate applications were successfully carried out. The reversibility and reusability of the response to Cu2+ ions with the paper strip application were examined for the first time.

A fluorescent sensor based on the cascade signal amplification strategy for ultra-sensitive detection of Cu2

Copper is an essential element in the human body, participating in various physiological activities in the bodies of organisms. However, an excessive load of Cu²⁺ is associated with several neurodegenerative diseases and prion diseases, also identified as a symptom of Wilson's disease (WD). A straightforward, rapid, sensitive, and specific copper sensor is highly required but remains a challenge. In this study, guided by the simulation, we developed a chemical sensor using a cascade signal amplification strategy based on the Cu-catalyzed click reaction, combined with a fluorescence-enhanced substrate with gold nanorods coupled with silver nanoislands. The sensor can selectively detect Cu²⁺ as low as 3.87 nM within 10 min. We have demonstrated that this method can be directly employed for WD diagnosis in urine samples. In addition, using antibiotic susceptibility testing (AST) as an example, we verify whether this assay can be adapted to other targets where Cu is designed as an indirect indicator.

Design and optimization of sensitive analytical spectrophotometric method for micro determination of copper(II) from e-waste by using of novel chromogenic extractant

In this article, a novel spectrophotometric reagent 1-(pyrimidine)-4, 4, 6-trimethyl-1,4-dihydropyrimidine-2-thiol [PTPT] has been synthesized for liquid-liquid extraction and spectrophotometric determination of copper(II). The as-synthesized ligand has been selectively forms stable complex with copper(II) in basic medium (pH 9.0), in presence of mild pyridine the extraction and color stability has found to be synergistically enhanced. The equilibrium time is 10 min for effective extraction of copper(II) from organic phase and absorbance of colored organic complex in carbon tetrachloride is measured spectrophotometrically at λ_max 615 nm against reagent blank. The ternary complex of Cu(II)-PTPT-Py having molar ratio 1:2:2 (M:L:Py) showed green colored complex. The main factors influencing the achievement of synergistic extraction; i.e. pH, ligand concentration, type and volume of the dispersive organic solvents, equilibrium time, synergent concentration and foreign ions were investigated. The Beer's law was obeyed in the concentration range 1-20 μg mL^-1 of copper(II) and optimum concentration range is evaluated by Ringbom's plot and it is found that 2.5-25 μg mL^-1. In presence of pyridine, molar absorptivity and Sandell's sensitivity of copper(II)-PTPT complex is 2.80 × 10³ L mol^-1 cm^-1 and 0.226 μg cm^-2, respectively and in absence of pyridine, molar absorptivity and Sandell's sensitivity of copper(II)-PTPT complex is 1.35 × 10³ L mol^-1 cm^-1 and 0.469 μg cm^-2, respectively. The stoichiometry of the copper(II)-PTPT-pyridine complex was calculated by slope ratio method, mole ratio method and Job's method of continuous variation and it has been found as 1:2:2. No significant effects of potentially interfering species i.e. cations and anions were observed. The optimized method was applied for the determination of copper(II) in binary, synthetic mixtures and successfully applied for determination of copper(II) from e-waste samples. The standard deviation (R.S.D.) is 0.11% for n = 5 repetition. The reliability of the developed method is confirmed by comparison of experimental results with atomic absorption spectrophotometer.

A naked-eye colorimetric sensor based on chalcone for the sequential recognition of copper(ii) and sulfide ions in semi-aqueous solution: spectroscopic and theoretical approaches

A chalcone-based new colorimetric sensor A01 for the sequential detection of Cu²⁺ and S²⁻ ions.

Ultrasensitive Optical Chemosensor for Cu(II) Detection

Herein, the main objective of this research is to design and synthesize a novel optical chemosensor, 2,6-Bis(4-dimethylaminophenyl)-4-(dicyanomethylene)-cyclohexane-1,1-dicarbo-nitrile (BDC), for detection of one of the most significant metal ions Cu(II). This novel fluorescent chemosensor exhibits unique optical properties with large Stokes shift (about 170 nm) approximately. The fluorescence and UV–vis absorption performance among the BDC probe and Cu(II) ions were examined in 1:9 (v/v) methanol–HEPES buffer (pH = 7.2) solution. Also, BDC displays high selectivity for Cu(II) concerning other cations. Moreover, this probe provides high selectivity and sensitivity based on their fluorescence properties and recognition abilities within a detection limit of the Cu(II) contents (LOD 2.3 x 10⁻⁷ M). The suggested mechanism of BDC sensor is attributed to the chelation process with Cu(II), to establish a 1:1 metal-ligand ratio complex with a binding constant (K_bind = 7.16 x 10⁴ M⁻¹). The detection process is accompanied by quenching the main emission peak of the BDC at 571 nm. All the experimental data were collected to investigate the effects of several important parameters such as reversibility and the concentration limits. Besides, we study the interference of various metal ions on selectivity and detection capacity of this significant Cu (II) ion. This novel chemosensor shows ultrasensitive, fast tracing of Cu(II) in the physiological pH range (pH 7.2) and therefore may propose a novel promising method for the investigation of the biological functions of Cu(II) in living cells.

A new highly selective diarylethene with near-infrared fluorochrome unit for sequential detection of copper ion

A new-synthesized diarylethene with near-infrared fluorochrome unit exhibited excellent photochromism under the irradiation of UV light (297 nm) and visible light (λ > 500 nm). When Cu²⁺ was added to the diarylethene solution, a fluorescent emission band centered at 736 nm appeared, indicating that the emission peak wavelength of compound is in near-infrared region. According to data of NMR, MS and other experiments, the complex ratio of the target compound to Cu²⁺ was 1:1 in the CH₃CN-H₂O solution (v/v = 9:1) with a limit of detection (LOD) of 0.10 μM. Furthermore, a logic circuit was constructed with four input signals (ultraviolet stimulus, visible light stimulus, Cu²⁺ and EDTA) and one output signal (fluorescent intensity at 736 nm).

A visible chemosensor based on carbohydrazide for Fe(ii), Co(ii) and Cu(ii) in aqueous solution

A colorless sensor with pyridyl and carbohydrazide components shows a unique photoresponse when exposed to Fe²⁺, Cu²⁺ and Co²⁺. The sensor's colorimetric response is unique to these metal ions and is stable around neutral pH.

A novel copper selective sensor based on ion imprinted 2-vinylpyridine polymer

A novel potentiometric Cu2+-selective microsensor has been developed that is based upon ion imprinted 2-vinylpyridine polymer. The polymer was synthesized using Cu(II) ions, 2-vinylpyridine, methacrylic acid, and ethylene glycol dimethacrylate as a template, functional monomer, and cross-linker, respectively. The resultant polymer was used as ionophore to obtain a selective potentiometric response towards Cu(II) ions in the structure of the PVC membrane. The detection limit of the microsensor was determined to be 8.4 × 10−7 mol/L, and its response time was considerably short (less than 15 s). The prepared microsensor exhibited a near-Nernstian response for Cu(II) ions over the concentration range of 10−1 to 10−6 mol/L, with a slope of 28.5 mV per decade over 2 months, and without any considerable divergence in potentials. The microsensor was effectively performed in a pH range between 4.0 and 7.0 and used as an indicator electrode in the potentiometric titration of Cu(II) ions with EDTA. The proposed microsensor has been successfully demonstrated for the determination of copper in a number of environmental water samples. The obtained potentiometric results were in good harmony with the results obtained by the AAS method.

Rapid Detection of Copper in Biological Systems Using Click Chemistry

A fast (1 min), straightforward but efficient, click chemistry-based system that enables the rapid detection of free copper (Cu) ions in either biological fluids or living cells without tedious pretreatment is provided. Cu can quickly induce the conjugation between graphene oxide (GO) and a fluorescent dye via click reaction. On the basis of the high specificity of bioorthogonal reaction and the effective quenching ability of GO, the assay studied in this paper can respond to Cu ions in less than 1 min with excellent selectivity and sensitivity, which is the fastest sensor for Cu as far as it is known. In addition, the application of this system is verified by performing assays in living cells and untreated urine samples from patients suffering from Wilson's Disease. Such a Cu detection system shows great promises in both fundamental research and routine clinical diagnostics.

A highly selective “ON–OFF” probe for colorimetric and fluorometric sensing of Cu2+in water

A new diformyl phenol based probe for selective detection of Cu²⁺in aqueous medium, applicable for cell imaging in Vero cells. Theoretical studies were performed to establish the underlying keto–enol tautomerism and optimization of the Cu²⁺complex.

A phthalazine-based two-in-one chromogenic receptor for detecting Co(2+) and Cu(2+) in an aqueous environment

A new multifunctional and highly selective chemosensor for Co(2+) and Cu(2+) was designed and synthesized. could simultaneously detect both Co(2+) and Cu(2+) by changing its color from pale yellow to pink and to orange in a near-perfect aqueous solution. The binding modes of to Co(2+) and Cu(2+) were determined to be a 2 : 1 complexation stoichiometry through Job's plot, ESI-mass spectrometry analysis and (1)H NMR titration. The detection limits (1.5 and 2.1 μM) of for Co(2+) and Cu(2+) were lower than the DEP guidelines (1.7 μM for Co(2+)) and the WHO guidelines (31.5 μM for Cu(2+)) for drinking water. The chemosensor could be used to quantify Co(2+) and Cu(2+) in water samples. Moreover, could be used as a practical, visible colorimetric test kit for both Co(2+) and Cu(2+). The sensing mechanisms of Co(2+) and Cu(2+) by were supported by theoretical calculations.

Unbound position II in MXCXXC metallochaperone model peptides impacts metal binding mode and reactivity: Distinct similarities to whole proteins

The effect of position II in the binding sequence of copper metallochaperones, which varies between Thr and His, was investigated through structural analysis and affinity and oxidation kinetic studies of model peptides. A first Cys-Cu(I)-Cys model obtained for the His peptide at acidic and neutral pH, correlated with higher affinity and more rapid oxidation of its complex; in contrast, the Thr peptide with the Cys-Cu(I)-Met coordination under neutral conditions demonstrated weaker and pH dependent binding. Studies with human antioxidant protein 1 (Atox1) and three of its mutants where S residues were replaced with Ala suggested that (a) the binding affinity is influenced more by the binding sequence than by the protein fold (b) pH may play a role in binding reactivity, and (c) mutating the Met impacted the affinity and oxidation rate more drastically than did mutating one of the Cys, supporting its important role in protein function. Position II thus plays a dominant role in metal binding and transport.

Azaacenes as active elements for sensing and bio applications

Recent progress in the application of azaacenes in sensing and bio-fields has been summarized.

Application and recognition behaviors of TPA-cored probes with subtle structural change

Two new triphenylamine-cored probes (L1, L2) with different receptor units have been synthesized and fully characterized by IR, NMR and MS spectra. Their photophysical properties have been investigated in detail. The recognition abilities of two probes were evaluated by a series of metal ions, which showed that L1 could recognize Cu(2+) over other metal ions. L2 could respond to Cu(2+), Hg(2+) in a short time, which interferes with a little each other. The Job's plot and (1)H NMR titration of L1 with Cu(2+) and L2 with Cu(2+) (Hg(2+)) in CD3CN verified the coordination mode of complexes L1-Cu(2+), L2-Cu(2+) and L2-Hg(2+), respectively. The limit of detection of L2 for Cu(2+) was lower than that of L1 towards Cu(2+). The results demonstrated that the receptor units in the probes had remarkable effect on recognizing metal ions. Meanwhile, L1 and L2 showed potential application in bio-imaging after mixing with Cu(2+).

Dual-channel detection of Cu(2+) and F(-) with a simple Schiff-based colorimetric and fluorescent sensor

A simple and easily synthesized colorimetric and fluorescent receptor 1, based on 4-diethylaminosalicylaldehyde moieties as a binding and signaling unit, has been synthesized and characterized. The receptor 1 has a selective colorimetric sensing ability for copper (II) ion by changing color from colorless to yellow in aqueous solution, and could be utilized to monitor Cu(II) over a wide pH range of 4-11. In addition, the detection limit (12μM) of 1 for Cu(2+) is much lower than that (30μM) recommended by WHO in drinking water, and its copper complex could be reversible simply through treatment with a proper reagent such as EDTA. Moreover, receptor 1 exhibited both a color change from colorless to yellow and fluorescence enhancement with a red shift upon addition to F(-) in DMSO. The recognition mechanism was attributed to the intermolecular proton transfer between the hydroxyl group of the receptor and the fluoride.

Effect of metal oxidation state on FRET: a Cu(i) silent but selectively Cu(ii) responsive fluorescent reporter and its bioimaging applications

A new structurally characterized cell permeable rhodamine-cinnamaldehyde hybrid (HL) behaves as a Cu(ii) ions selective chemosensor through FRET process which depends on +2 state of copper ion exclusively.

Coupling a novel spiro-rhodamine B lactam derivative to Fe3O4 nanoparticles for visual detection of free copper ions with high sensitivity and specificity

A novel spiro-rhodamine B lactam derivative, which can be coupled to Fe₃O₄ NPs and act as a Cu²⁺-selective visual sensor is reported. It can be used to directly detect as little as 50 nM of Cu²⁺ in river or tap water by only naked-eye observation.

Europium(iii) β-diketone complex as portable luminescent chemosensor for naked eye Cu2+ detection and recyclable on–off–on vapor response

A novel Eu³⁺ complex coordinated by polymers with β-diketone pendant groups (Eu³⁺–PDKMA) has been synthesized for Cu²⁺ cation and acid–base vapor detections.

Synthesis, characterization, and biological activities of two Cu(II) and Zn(II) complexes with one polyquinoline ligand

Two new complexes, [CuLCl]ClO4 (1) and [Zn2L2SO4(H2O)2](ClO4)2 (2) [L=N,N-bis(quinolin-2-ylmethyl)quinolin-8-amine], have been synthesized and structurally characterized. The interactions of two complexes with CT-DNA have been investigated by UV absorption, fluorescence spectroscopy, viscosity measurements and gel electrophoresis under physiological conditions. Results show that the complexes bind to CT-DNA with a moderate intercalative mode and exhibit efficient DNA cleavage activity on UV-A light of 365 nm. Furthermore, two complexes could quench the intrinsic fluorescence of BSA in a static quenching process based on BSA binding experiments. Notably, in vitro cytotoxicity study of two complexes on four human tumor cells lines (7404, HeLa, MCF-7, and HepG-2) indicate that both of them have the potential to act as effective anticancer drugs with low IC50 values.

Peptide models of Cu(I) and Zn(II) metallochaperones: the effect of pH on coordination and mechanistic implications

The first NMR structures of Cu(I) and Zn(II) peptide complexes as models of metallochaperones were derived with no predetermined binding mode. The cyclic peptide MDCSGCSRPG was reacted with Cu(I) and Zn(II) at low and moderate pH. This peptide features the conserved sequence of copper chaperones but with Asp at position 2 as appears in the zinc binding domain of ZntA. The structures were compared with those of the Cu(I) complexes of the wild-type sequence peptide MTCSGCSRPG. All analyses were conducted first with no metal-binding constraints to ensure accurate binding ligand assignment. Several structures included metal-Met binding, raising a possible role of Met in the metal transport mechanism. Both Cu(I) and Zn(II) gave different complexes when reacted with the peptide of the native-like sequence under different pH conditions, raising the possibility of pH-dependent transport mechanisms. Cu(I) bound the MTCSGCSRPG peptide through one Cys and the Met under acidic conditions and differently under basic conditions; Zn(II) bound the MDCSGCSRPG peptide through two Cys and the Met residues under acidic conditions and through one Cys and the Met under basic conditions, while Cu(I) bound the non-native Asp mutant peptide through the Asp and one Cys under both conditions, suggesting that Asp may inhibit pH-dependent binding for Cu(I). NOESY and ESI-HRMS supported the presence of an aqua ligand for Zn(II), which likely deprotonated under basic conditions to give a hydroxo group. Coordination similarities were detected among the model system and native proteins, which overall suggest that coordination flexibility is required for the function of metallochaperones.

NIR- and FRET-based sensing of Cu2+ and S2- in physiological conditions and in live cells

We have synthesized a new indole functionalized rhodamine derivative L(1) which specifically binds to Cu(2+) in the presence of large excess of other competing ions with visually observable changes in their electronic and fluorescence spectral behavior. These spectral changes are significant enough in the NIR and visible region of the spectrum and thus enable naked eye detection. The receptor, L(1), could be employed as a resonance energy transfer (RET) based sensor for detection of Cu(2+) based on the process involving the donor indole and the acceptor Cu(2+) bound xanthene fragment. Studies reveal that L(1)-Cu complex is selectively and fully reversible in presence of sulfide anions. Further, fluorescence microscopic studies confirmed that the reagent L(1) could also be used as an imaging probe for detection of uptake of these ions in HeLa cells.

Synthesis, characterization, and evaluation of five coordinated copper(II) complexes as antibacterial, artificial nuclease, and SOD mimics

The copper(II) complexes with ciprofloxacin (CFLH), levofloxacin (LFLH), norfloxacin (NFLH), and neutral bidentate ligands have been synthesized and characterized. The complexes have been evaluated for their antibacterial activity against selective species. Complexes have been also checked for their interacting behavior with DNA, and were found to have two different modes of interaction, classical and partial intercalation. Tested complexes were found to be better antioxidants with their IC(50) values ranging from 0.51 to 0.97 μM.

11B NMR sensing of d-block metal ions in vitro and in cells based on the carbon-boron bond cleavage of phenylboronic acid-pendant cyclen (cyclen = 1,4,7,10-tetraazacyclododecane)

Noninvasive magnetic resonance imaging (MRI) including the "chemical shift imaging (CSI)" technique based on (1)H NMR signals is a powerful method for the in vivo imaging of intracellular molecules and for monitoring various biological events. However, it has the drawback of low resolution because of background signals from intrinsic water protons. On the other hand, it is assumed that the (11)B NMR signals which can be applied to a CSI technique have certain advantages, since boron is an ultratrace element in animal cells and tissues. In this manuscript, we report on the sensing of biologically indispensable d-block metal cations such as zinc, copper, iron, cobalt, manganese, and nickel based on (11)B NMR signals of simple phenylboronic acid-pendant cyclen (cyclen = 1,4,7,10-tetraazacyclododecane), L(6) and L(7), in aqueous solution at physiological pH. The results indicate that the carbon-boron bond of L(6) is cleaved upon the addition of Zn(2+) and the broad (11)B NMR signal of L(6) at 31 ppm is shifted upfield to 19 ppm, which corresponds to the signal of B(OH)(3). (1)H NMR, X-ray single crystal structure analysis, and UV absorption spectra also provide support for the carbon-boron bond cleavage of ZnL(6). Because the cellular uptake of L(6) was very small, a more cell-membrane permeable ligand containing the boronic acid ester L(7) was synthesized and investigated for the sensing of d-block metal ions using (11)B NMR. Data on (11)B NMR sensing of Zn(2+) in Jurkat T cells using L(7) is also presented.

Hepatocyte targeting and intracellular copper chelation by a thiol-containing glycocyclopeptide

Metal overload plays an important role in several diseases or intoxications, like in Wilson's disease, a major genetic disorder of copper metabolism in humans. To efficiently and selectively decrease copper concentration in the liver that is highly damaged, chelators should be targeted at the hepatocytes. In the present work, we synthesized a molecule able to both lower intracellular copper, namely Cu(I), and target hepatocytes, combining within the same structure a chelating unit and a carbohydrate recognition element. A cyclodecapeptide scaffold displaying a controlled conformation with two independent faces was chosen to introduce both units. One face displays a cluster of carbohydrates to ensure an efficient recognition of the asialoglycoprotein receptors, expressed on the surface of hepatocytes. The second face is devoted to metal ion complexation thanks to the thiolate functions of two cysteine side-chains. To obtain a chelator that is active only once inside the cells, the two thiol functions were oxidized in a disulfide bridge to afford the glycopeptide P(3). Two simple cyclodecapeptides modeling the reduced and complexing form of P(3) in cells proved a high affinity for Cu(I) and a high selectivity with respect to Zn(II). As expected, P(3) becomes an efficient Cu(I) chelator in the presence of glutathione that mimics the intracellular reducing environment. Finally, cellular uptake and ability to lower intracellular copper were demonstrated in hepatic cell lines, in particular in WIF-B9, making P(3) a good candidate to fight copper overload in the liver.

Development of next-generation photolabile copper cages with improved copper binding properties

Seven new nitrogen-donor ligands that contain a photoactive nitrophenyl group within the ligand backbone have been prepared and evaluated for their binding affinity for copper(ii) and zinc(ii). Among this series, the ligand 3Gcage (pyridine-2-carboxylic acid {1-(2-nitro-phenyl)-3-[(pyridin-2-ylmethyl)-amino]-propyl}-amide) has the best affinity for copper(ii), with an apparent dissociation constant at pH 7.4 of 0.18 fM. Exposure of buffered aqueous solutions of 3Gcage or Cu(ii)-bound 3Gcage to UV light induces bond cleavage in the ligand backbone, which reduces the denticity of the ligands. The quantum yields of photolysis for 3Gcage in the absence and presence of Cu(ii) are 0.66 and 0.43, respectively. Prior to photolysis, the 3Gcage ligand inhibits copper from generating hydroxyl radicals in the presence of hydrogen peroxide and ascorbic acid; however, hydroxyl radical formation increases by more than 300% following light activation, showing that the reactivity of the copper center can be triggered by light.

Insight in the transport behavior of copper glycinate complexes through the porcine gastrointestinal membrane using an Ussing chamber assisted by mass spectrometry analysis

An Ussing chamber study was conducted in order to investigate the transport behavior of copper glycinate complexes through a porcine gastrointestinal membrane. Organic copper complexes such as copper tri- and tetraglycinates (GGG-Cu(II) and GGGG-Cu(II)) were used as model system. In a novel analytical approach the Ussing chamber was combined with mass spectrometry. Therefore, relevant analytical methods based on MALDI-MS and a coupling of capillary electrophoresis to ICP-MS and ESI-MS were developed for the determination of copper complexes in the mucosal and serosal half-chambers. It was found that 86.1+/-8.5% of copper triglycinate but only 20.8+/-9.9% of copper tetraglycinate penetrated the digestive membrane without modification. Furthermore, inorganic copper species were not detected but a new copper complex (m/z 442) was found to be formed in both compartments of the Ussing chamber.

Aqua-[4-chloro-2-(2-pyridylmethyl-imino-meth-yl)phenolato]copper(II) nitrate monohydrate

In the title mononuclear complex, [Cu(C₁₃H₁₀ClN₂O)(H₂O)]­NO₃·H₂O, the Cu^II atom is four-coordinated by two N atoms and one O atom of the tridentate Schiff base ligand and one O atom from the coordinated water mol­ecule in a slightly distorted square-planar configuration. The nitrate ion inter­acts with the copper center [Cu1⋯O3 = 2.579 (4) Å]. In the crystal, the cations, anions and water mol­ecules are linked by O—H⋯O and O—H⋯N hydrogen bonds.