Biomimetic Thiolate Alkylation with Zinc Pyrazolylbis(thioimidazolyl)borate Complexes

Symmetric and non-symmetric anthracen-diyl bis(alkylidynes)

Three examples of 9-bromo-10-(alkylidynyl)anthracenes, [W{CC(C₆H₄)₂CBr}(CO)₂(L)] (L = hydrotris(dimethylpyrazol-1-yl)borate Tp*, hydrotris(pyrazol-1-yl)borate Tp, hydrotris(2-mercapto-N-methylimidazol-1-yl)borate Tm) were prepared via modified Fischer-Mayr acyl oxide-abstraction protocols. With a sufficiently bulky ancillary ligand (L = Tp*) the aryl bromide is ammenable to cross-coupling reactions that enable more elaborate derivatives to be prepared. These including symmetric bis(alkylidynyl)anthracenes as well as non-palindromic examples bearing disparate metals and/or co-ligands. In contrast, these couplings fail for smaller ligands (L = Tp, Tm) where it was found that Pd⁰ or Pt⁰ were instead able to coordinate across two WC bonds to give trimetallic bow-tie complexes, [W₂M{μ-CC(C₆H₄)₂CBr}₂(CO)₄(L)₂] (M = Pd, Pt; L = Tp, Tm).

Spectroscopic, electrochemical, and alkylation reactions: tert-butyl N-(2-mercaptoethyl)carbamate copper(II) and nickel(II) complexes as structural mimics for the active site of thiolate-alkylating enzymes

Two new dithiolate copper(II) and nickel(II) complexes with the ligand tert-butyl N-(2-mercaptoethyl)-carbamate (Boc-SH) were prepared. Their structures were established to be [(Boc-S)2M], where M=Cu (1) and Ni (2) by using elemental analysis, thermal analysis, molar conductivity, FT-IR, Raman, UV/VIS, and ESR as well as EI-mass spectroscopic methods. The X-ray structure of the ligand Boc-SH was also determined. Spectral data showed that the carbamate ligand act as anioinic bidentate through one immine nitrogen and one thiolate sulfur donor atoms. The spectral techniques suggest that both complexes appear to have square planar geometries. The very low electrical conductance of the two complexes supports their neutral nature. The redox behaviors of the obtained complexes were also investigated by cyclic voltammetry. The monomeric nature of both complexes was assessed from their magnetic susceptibility values. The thermoanalytical data evidence that complex (2) is stable up to 165°C and undergo complete decomposition, resulting in NiO as a residual product. The TEM image of the obtained oxide residue showed its nanosize cluster, suggesting that complex (2) may be used as a precursor for the formation of nanooxide. The methylation reactions of the two dithiolate complexes (1) and (2) with methyl iodide appear to occur intramolecularly at the metal(II)-bound dithiolates, forming the metal(II)-bound dithioether complexes [M(Boc-SCH3)2]I2 with clean second-order constants of 7.95×10(-2) and 10.59×10(-2) M(-1) s(-1), respectively.

Synthesis, Physical Properties, Structural, and Electrochemical Characterization of Methimidazolium and Imidazolium-based Tetracyanoquinodimethane Anion Radical Salts

Two methimazolium and two imidazolium-based salts derived from combination with the tetracyanoquinodimethane (TCNQ) radical anion have been synthesized (1–4). The 1:1 (cation:anion) stoichiometry of the chemically synthesized materials is fully supported by steady-state voltammetric measurements at a microdisc electrode in acetonitrile. The methimazolium TCNQ salts (1 and 2), which contain an acidic proton on the cation, exhibit a protonation step coupled to the TCNQ1–/2– charge-transfer process. Solid–solid transformations at a TCNQ-modified electrode also lead to electrochemical synthesis of 1–4, but also indicate that other cation:anion stoichiometries are accessible. Atomic force microscopy for electrochemically synthesized samples exhibit rod-like morphology. Conductivity measurements on chemically and electrochemically prepared salts are in the semiconducting range. Scanning electrochemical microscopy approach curve data support the substantial conductivity of these solids. Extensive physicochemical characterization of these materials is in complete accordance with the X-ray crystal structure of 1-acetonitrile-3-methylimidazolium tetracyanoquinodimethane, [AMim+][TCNQ1–], 4.

Zinc-promoted alkyl transfer: a new role for zinc

The roles of zinc in biology are often thought to be limited to activating water, as in hydrolytic enzymes, and conferring structure, as in the zinc finger proteins. Over the past 15 years, it has been shown that there are many zinc-containing proteins that have 'structural-like' zinc sites with multiple cysteine ligands but in which the site promotes the alkylation of a zinc-bound thiolate. Recent work continues to extend the range of proteins showing zinc-promoted alkytransfer activity, and has refined the structural details of these sites. Of particular interest are recent crystal structures suggesting that in most cases the endogenous ligand that is displaced when the substrate thiol bind is an endogenous amino acid and not water, as had been previously thought. Despite extensive study, it remains unclear whether these enzymes function via an associative mechanism (direct alkylation of a zinc-bound thiolate) or a dissociate mechanism (nucleophilic attack by a free thiolate that has dissociated from the zinc).

Applications of Tripodal [S(3)] and [Se(3)] L(2)X Donor Ligands to Zinc, Cadmium and Mercury Chemistry: Organometallic and Bioinorganic Perspectives

The tripodal tris(2-mercapto-1-R-imidazolyl)hydroborato ligand system, [Tm(R)], and its selenium counterpart, [Tse(R)], provide useful platforms for investigating organometallic and bioinorganic aspects of the chemistry of zinc, cadmium and mercury in sulfur-rich and selenium-rich coordination environments. For example, the tridentate [Tm(R)] ligand provides an [S(3)] donor array that is of use for mimicking aspects of zinc enzymes and proteins that have sulfur-rich active sites, such as the Ada DNA repair protein. With respect to mercury, an interesting application of the [Tm(Bu(t) )] ligand is the synthesis of the mercury alkyl compounds [Tm(Bu(t) )]HgR (R = Me, Et) that react with PhSH to yield [Tm(Bu(t) )]HgSPh and RH, a reaction that emulates mercury detoxification by the organomercurial lyase, MerB. In addition to the tridentate [Tm(R)] and [Tse(R)] ligands, applications of the bidentate counterparts, [Bm(R)] and [Bse(R)] are also described.

Zn−OH2 and Zn−OH Complexes with Hydroborate-Derived Tripod Ligands: A Comprehensive Study

The complete array of those hydrotris(pyrazolyl/thioimidazolyl)borate ligands that were developed and used in the author's laboratories, with N3, N2S, NS2, and S3 donor sets, was scanned for their ability to form Zn-OH2 and Zn-OH complexes. The coordination motifs found were Zn-OH2, Zn-OH, Zn-OH-Zn, and Zn-O2H3-Zn. Of these, the well-established Zn-OH motif was complemented with novel species bearing N3, NS2, and S3 tripods. The Zn-OH2 motif was observed only with pyrazolylborate ligands and only in unusual situations with coordination numbers higher than 4 for zinc. The new Zn-OH-Zn motif was realized for three different pyrazolylborates, for one NS2 tripod, and for two S3 tripods. Finally, it was verified that the Zn-O2H3-Zn motif again occurs only with pyrazolylborate ligands. The new complexes were identified by a total of 11 structure determinations.

Thiolate Alkylation in Tripod Zinc Complexes: A Comparative Kinetic Study

The biologically relevant alkylations of the thiolate ligands in tripod zinc thiolates by methyl iodide were studied kinetically. Five tripod ligands of the pyrazolyl/thioimidazolyl borate type were employed, offering N3, N2S, NS2, and S3 donor sets. For each of them, the ethyl-, benzyl-, phenyl-, and p-nitrophenylthiolate zinc complexes were investigated, yielding a total of 20 second-order rate constants. The comparison of these rate constants shows three effects: (1) the electronic effect among the thiolates, i.e., the ethanethiolates react about 3 orders of magnitude faster than the p-nitrophenylthiolates; (2) the steric effect among the pyrazolylborates, i.e., the phenyl-substituted ones react about 2 orders of magnitude faster than the tert-butyl-substituted ones; and (3) the strong acceleration by the sulfur donors in the tripods, reaching 4 orders of magnitude between the reaction times of the (N3)Zn-SR and (S3)Zn-SR complexes.

Thiolate exchange in [TmR]ZnSR' complexes and relevance to the mechanisms of thiolate alkylation reactions involving zinc enzymes and proteins

The zinc and cadmium thiolate complexes [TmBut]MSCH2C(O)N(H)Ph (M = Zn, Cd) may be obtained via treatment of the respective methyl complex [TmBut]MMe with PhN(H)C(O)CH2SH. The molecular structure of [TmBut]ZnSCH2C(O)N(H)Ph has been determined by X-ray diffraction, thereby demonstrating the presence of an intramolecular N-H S hydrogen bond between the amide N-H group and thiolate sulfur atom. [TmBut]ZnSCH2C(O)N(H)Ph mimics the function of the Ada DNA repair protein by undergoing alkylation with MeI to give [TmBut]ZnI and MeSCH2C(O)N(H)Ph. A series of crossover experiments and 1H NMR magnetization transfer studies establish that thiolate exchange between [TmR]ZnSR' derivatives is facile in this system, an observation that supports the previous suggestion that the alkylation of [TmPh]ZnSCH2C(O)N(H)Ph by MeI may proceed via a sequence that involves dissociation of [PhN(H)C(O)CH2S]-.