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Matczak P, Buday P, Kupfer S, Görls H, Mlostoń G, Weigand W. Probing the performance of DFT in the structural characterization of [FeFe] hydrogenase models. J Comput Chem 2025; 46:e27515. [PMID: 39417365 DOI: 10.1002/jcc.27515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 09/20/2024] [Accepted: 10/01/2024] [Indexed: 10/19/2024]
Abstract
In this work, a series of DFT and DFT-D methods is combined with double-ζ basis sets to benchmark their performance in predicting the structures of five newly synthesized hexacarbonyl diiron complexes with a bridging ligand featuring a μ-S2C3 motif in a ring-containing unit functionalized with aromatic groups. Such complexes have been considered as [FeFe] hydrogenase catalytic site models with potential for eco-friendly energetic applications. According to this assessment, r2SCAN is identified as the density functional recommended for the reliable description of the molecular and crystal structures of the herein studied models. However, the butterfly (μ-S)2Fe2 core of the models demonstrates a minor deformation of its optimized geometry obtained from both molecular and periodic calculations. The FeFe bond length is slightly underestimated while the FeS bonds tend to be too long. Adding the D3(BJ) correction to r2SCAN does not lead to any improvement in the calculated structures.
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Affiliation(s)
- Piotr Matczak
- Department of Physical Chemistry, Faculty of Chemistry, University of Lodz, Lodz, Poland
| | - Philipp Buday
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Stephan Kupfer
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Helmar Görls
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Grzegorz Mlostoń
- Department of Organic and Applied Chemistry, Faculty of Chemistry, University of Lodz, Lodz, Poland
| | - Wolfgang Weigand
- Institute of Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Jena, Germany
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2
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Daraosheh AQ, Abul-Futouh H, Murakami N, Ziems KM, Görls H, Kupfer S, Gräfe S, Ishii A, Celeda M, Mlostoń G, Weigand W. Novel [FeFe]-Hydrogenase Mimics: Unexpected Course of the Reaction of Ferrocenyl α-Thienyl Thioketone with Fe 3(CO) 12. MATERIALS 2022; 15:ma15082867. [PMID: 35454560 PMCID: PMC9029206 DOI: 10.3390/ma15082867] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 03/28/2022] [Accepted: 04/11/2022] [Indexed: 01/27/2023]
Abstract
The influence of the substitution pattern in ferrocenyl α-thienyl thioketone used as a proligand in complexation reactions with Fe3(CO)12 was investigated. As a result, two new sulfur–iron complexes, considered [FeFe]-hydrogenase mimics, were obtained and characterized by spectroscopic techniques (1H, 13C{1H} NMR, IR, MS), as well as by elemental analysis and X-ray single crystal diffraction methods. The electrochemical properties of both complexes were studied and compared using cyclic voltammetry in the absence and in presence of acetic acid as a proton source. The performed measurements demonstrated that both complexes can catalyze the reduction of protons to molecular hydrogen H2. Moreover, the obtained results showed that the presence of the ferrocene moiety at the backbone of the linker of both complexes improved the stability of the reduced species.
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Affiliation(s)
- Ahmad Q. Daraosheh
- Department of Chemistry, College of Arts and Sciences, University of Petra, P.O. Box 961343, Amman 11196, Jordan;
| | - Hassan Abul-Futouh
- Department of Chemistry, Faculty of Science, The Hashemite University, P.O. Box 330127, Zarqa 13133, Jordan
- Correspondence: (H.A.-F.); (G.M.); (W.W.)
| | - Natsuki Murakami
- Department of Chemistry, Graduate School of Science and Engineering, Saitama University, Shimo-okubo, Sakura-ku, Saitama 338-8570, Japan; (N.M.); (A.I.)
| | - Karl Michael Ziems
- Institut für Physikalische Chemie und Abbe Center of Photonics, Friedrich-Schiller-Universität Jena, Helmholtzweg 4, 07743 Jena, Germany; (K.M.Z.); (S.K.); (S.G.)
| | - Helmar Görls
- Institut für Anorganische und Analytische Chemie, Friedrich-Schiller-Universität Jena, Humboldt Str. 8, 07743 Jena, Germany;
| | - Stephan Kupfer
- Institut für Physikalische Chemie und Abbe Center of Photonics, Friedrich-Schiller-Universität Jena, Helmholtzweg 4, 07743 Jena, Germany; (K.M.Z.); (S.K.); (S.G.)
| | - Stefanie Gräfe
- Institut für Physikalische Chemie und Abbe Center of Photonics, Friedrich-Schiller-Universität Jena, Helmholtzweg 4, 07743 Jena, Germany; (K.M.Z.); (S.K.); (S.G.)
| | - Akihiko Ishii
- Department of Chemistry, Graduate School of Science and Engineering, Saitama University, Shimo-okubo, Sakura-ku, Saitama 338-8570, Japan; (N.M.); (A.I.)
| | - Małgorzata Celeda
- Department of Organic & Applied Chemistry, University of Lodz, Tamka 12, 91-403 Łódź, Poland;
| | - Grzegorz Mlostoń
- Department of Organic & Applied Chemistry, University of Lodz, Tamka 12, 91-403 Łódź, Poland;
- Correspondence: (H.A.-F.); (G.M.); (W.W.)
| | - Wolfgang Weigand
- Institut für Anorganische und Analytische Chemie, Friedrich-Schiller-Universität Jena, Humboldt Str. 8, 07743 Jena, Germany;
- Correspondence: (H.A.-F.); (G.M.); (W.W.)
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Daraosheh AQ, Abul‐Futouh H, Abdel‐Rahem RA, Görls H, Stachel H, Weigand W. Synthesis and Electrochemical Investigations of the [FeFe]‐Hydrogenase H‐Cluster Mimics Mediated by Bicyclic Dithiols Derivative. Z Anorg Allg Chem 2021. [DOI: 10.1002/zaac.202000439] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Ahmad Q. Daraosheh
- Department of Chemistry College of Arts and Sciences University of Petra P.O. Box: 961343 Amman 11196 Jordan
| | - Hassan Abul‐Futouh
- Department of Pharmacy Al-Zaytoonah University of Jordan P.O. Box 130 Amman 11733 Jordan
| | - Rami A. Abdel‐Rahem
- Department of Chemistry College of Arts and Sciences University of Petra P.O. Box: 961343 Amman 11196 Jordan
| | - Helmar Görls
- Institut für Anorganische und Analytische Chemie Friedrich-Schiller-Universität Jena Humboldt Str. 8 07743 Jena Germany
| | - Hans‐Dietrich Stachel
- Zentrum für Arzneiforschung Department Pharmazie Ludwig-Maximilians-Universität München Butenandtstr. 7, Haus C 81377 München Germany
| | - Wolfgang Weigand
- Institut für Anorganische und Analytische Chemie Friedrich-Schiller-Universität Jena Humboldt Str. 8 07743 Jena Germany
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Buday P, Seeber P, Zens C, Abul‐Futouh H, Görls H, Gräfe S, Matczak P, Kupfer S, Weigand W, Mloston G. Iron(0)-Mediated Stereoselective (3+2)-Cycloaddition of Thiochalcones via a Diradical Intermediate. Chemistry 2020; 26:11412-11416. [PMID: 32212185 PMCID: PMC7540601 DOI: 10.1002/chem.202001412] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Indexed: 01/05/2023]
Abstract
Reactions of α,β-unsaturated aromatic thioketones 1 (thiochalcones) with Fe3 (CO)12 leading to η4 -1-thia-1,3-diene iron tricarbonyl complexes 2, [FeFe] hydrogenase mimics 3, and the thiopyrane adduct 4 are described. Obtained products have been characterized by X-ray crystallography and by computational methods. Completely regio- and diastereoselective formation of the five-membered ring system in products 3, containing four stereogenic centers, can be explained by an unprecedented, stepwise (3+2)-cycloaddition of two thiochalcone molecules mediated by Fe3 (CO)12 . Quantum chemical calculations aimed at elucidation of the reaction mechanism, suggest that the formal (3+2)-cycloaddition proceeds via sequential intramolecular radical transfer events upon homolytic cleavage of one carbon-sulfur bond leading to a diradical intermediate.
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Affiliation(s)
- Philipp Buday
- Institute of Inorganic and Analytical ChemistryFriedrich Schiller University JenaHumboldtstrasse 807743JenaGermany
| | - Phillip Seeber
- Institute of Physical Chemistry and Abbe Center of PhotonicsFriedrich Schiller University JenaHelmholtzweg 407743JenaGermany
| | - Clara Zens
- Institute of Physical Chemistry and Abbe Center of PhotonicsFriedrich Schiller University JenaHelmholtzweg 407743JenaGermany
| | - Hassan Abul‐Futouh
- Faculty of PharmacyAl-Zaytoonah University of JordanP.O.Box 130Amman11733Jordan
| | - Helmar Görls
- Institute of Inorganic and Analytical ChemistryFriedrich Schiller University JenaHumboldtstrasse 807743JenaGermany
| | - Stefanie Gräfe
- Institute of Physical Chemistry and Abbe Center of PhotonicsFriedrich Schiller University JenaHelmholtzweg 407743JenaGermany
| | - Piotr Matczak
- Faculty of ChemistryUniversity of LodzTamka 1291403ŁódźPoland
| | - Stephan Kupfer
- Institute of Physical Chemistry and Abbe Center of PhotonicsFriedrich Schiller University JenaHelmholtzweg 407743JenaGermany
| | - Wolfgang Weigand
- Institute of Inorganic and Analytical ChemistryFriedrich Schiller University JenaHumboldtstrasse 807743JenaGermany
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Agarwal T, Kaur-Ghumaan S. Mono- and dinuclear mimics of the [FeFe] hydrogenase enzyme featuring bis(monothiolato) and 1,3,5-triaza-7-phosphaadamantane ligands. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2020.119442] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Daraosheh AQ, Abul-Futouh H, Görls H, Weigand W. Synthesis and electrochemical investigations of the ortho-metalated complexes [Fe2(CO)6{к,μ-S,η2-(R)}] and their substitution reactions. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2019.119377] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Diferrocenyl Thioketone: Reactions with (Bisphosphane)Pt(0) Complexes-Electrochemical and Computational Studies. MATERIALS 2019; 12:ma12172832. [PMID: 31484359 PMCID: PMC6747965 DOI: 10.3390/ma12172832] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 08/26/2019] [Accepted: 08/29/2019] [Indexed: 01/07/2023]
Abstract
Diferrocenyl thioketone reacts smoothly with (bisphosphane)Pt(0) complexes in toluene solution at room temperature yielding 1:1 adducts identified as ferrocenyl (Fc) functionalized platinathiiranes. Their structures were unambiguously confirmed by means of spectroscopic methods as well as by X-ray diffraction analysis. A unique, ferrocene-rich platinathiirane, bearing three Fc-units, was prepared starting with [bis(diphenylphosphino)ferrocene] Pt(0(η2-norbornene). For comparison, a similar platinathiirane with one Fc-unit was obtained from the reaction of the latter complex with thiobenzophenone. Quantum-chemical calculations were carried out to describe the bonding pattern and frontier molecular orbitals of the ferrocene-rich platinathiirane complexes. These calculations confirmed that the C=S bond loses its formally double-bond character upon complexation (bisphosphane)Pt(0). Cyclic voltammetry measurements were performed to characterize the obtained platinathiiranes in CH2Cl2 solutions. For comparison, the cyclic voltammogram for diferrocenyl thioketoneas a mixed-valent (FeII-FeIII) compound was also recorded and analyzed. The results point out to a diffusion controlled electrode process in case of differocenyl thioketone and mixed diffusion and adsorption controlled electrode process in the case of the studied platinathiiranes.
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Weigand W. [FeFe]-hydrogenase mimics: Bio-inspired hydrogen production. PHOSPHORUS SULFUR 2019. [DOI: 10.1080/10426507.2019.1603727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Wolfgang Weigand
- Instiut für Anorganische und Analytische Chemie, Friedrich-Schiller-Universität Jena, Jena, D-Germany
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9
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[Fe–Fe] hydrogenase models: Iron(I)-carbonyl clusters coupled to alpha- and para-toluenethiolate ligands. Polyhedron 2016. [DOI: 10.1016/j.poly.2015.12.031] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Abstract
Virtually all organosulfur compounds react with Fe(0) carbonyls to give the title complexes. These reactions are reviewed in light of major advances over the past few decades, spurred by interest in Fe2(μ-SR)2(CO)x centers at the active sites of the [FeFe]-hydrogenase enzymes. The most useful synthetic route to Fe2(μ-SR)2(CO)6 involves the reaction of thiols with Fe2(CO)9 and Fe3(CO)12. Such reactions can proceed via mono-, di-, and triiron intermediates. The reactivity of Fe(0) carbonyls toward thiols is highly chemoselective, and the resulting dithiolato complexes are fairly rugged. Thus, many complexes tolerate further synthetic elaboration directed at the organic substituents. A second major route involves alkylation of Fe2(μ-S2)(CO)6, Fe2(μ-SH)2(CO)6, and Li2Fe2(μ-S)2(CO)6. This approach is especially useful for azadithiolates Fe2[(μ-SCH2)2NR](CO)6. Elaborate complexes arise via addition of the FeSH group to electrophilic alkenes, alkynes, and carbonyls. Although the first example of Fe2(μ-SR)2(CO)6 was prepared from ferrous reagents, ferrous compounds are infrequently used, although the Fe(II)(SR)2 + Fe(0) condensation reaction is promising. Almost invariably low-yielding, the reaction of Fe3(CO)12, S8, and a variety of unsaturated substrates results in C-H activation, affording otherwise inaccessible derivatives. Thiones and related C═S-containing reagents are highly reactive toward Fe(0), often giving complexes derived from substituted methanedithiolates and C-H activation.
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Affiliation(s)
- Yulong Li
- School of Chemistry and Pharmaceutical Engineering, Sichuan University of Science & Engineering, Zigong 643000, China
- School of Chemical Sciences, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
| | - Thomas B. Rauchfuss
- School of Chemical Sciences, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
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Zhao P, Gray DL, Rauchfuss TB. Rational Synthesis of the Carbonyl(perthiolato)diiron [Fe 2(S 3CPh 2)(CO) 6] and Related Complexes. Eur J Inorg Chem 2016; 2016:2681-2683. [PMID: 27818613 PMCID: PMC5089076 DOI: 10.1002/ejic.201600366] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Indexed: 11/10/2022]
Abstract
The photochemical reaction of Fe2(S2)(CO)6 and Ph2CS affords the perthiolate Fe2(S3CPh2)(CO)6 (1) in good yield. As confirmed crystallographically, 1 contains a previously elusive perthiolate ligand. The related reaction of Fe2(S2)(CO)5-(PPh3) and Ph2CS gave Fe2(S3CPh2)(CO)5(PPh3). Although Fe3S2(CO)9 and Ph2CS failed to efficiently give Fe2(S2CPh2)(CO)6, this compound could be prepared by desulfurization of 1 using PPh3.
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Affiliation(s)
- Peihua Zhao
- School of Materials Science and Engineering, North University of China Taiyuan 030051, PRC
- School of Chemical Sciences, University of Illinois at Urbana-Champaign Urbana, IL 61801, USA
| | - Danielle L. Gray
- School of Chemical Sciences, University of Illinois at Urbana-Champaign Urbana, IL 61801, USA
| | - Thomas B. Rauchfuss
- School of Chemical Sciences, University of Illinois at Urbana-Champaign Urbana, IL 61801, USA
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Mlostoń G, Grzelak P, Mikina M, Linden A, Heimgartner H. Hetero-Diels-Alder reactions of hetaryl and aryl thioketones with acetylenic dienophiles. Beilstein J Org Chem 2015; 11:576-82. [PMID: 26124858 PMCID: PMC4464410 DOI: 10.3762/bjoc.11.63] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2015] [Accepted: 04/15/2015] [Indexed: 11/23/2022] Open
Abstract
Selected hetaryl and aryl thioketones react with acetylenecarboxylates under thermal conditions in the presence of LiClO4 or, alternatively, under high-pressure conditions (5 kbar) at room temperature yielding thiopyran derivatives. The hetero-Diels-Alder reaction occurs in a chemo- and regioselective manner. The initially formed [4 + 2] cycloadducts rearrange via a 1,3-hydrogen shift sequence to give the final products. The latter were smoothly oxidized by treatment with mCPBA to the corresponding sulfones.
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Affiliation(s)
- Grzegorz Mlostoń
- Department of Organic and Applied Chemistry, University of Łódź, Tamka 12, PL 91-403 Łódź, Poland
| | - Paulina Grzelak
- Department of Organic and Applied Chemistry, University of Łódź, Tamka 12, PL 91-403 Łódź, Poland
| | - Maciej Mikina
- Center of Molecular and Macromolecular Studies PAS, Sienkiewicza 112, PL 90-363 Łódź, Poland
| | - Anthony Linden
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Heinz Heimgartner
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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Mebi CA, Trujillo JJ, Rosenthal BL, Bowman RB, Noll BC, Desrochers PJ. Iron(I)-carbonyl clusters tethered to (trifluoromethyl)thiophenolates. TRANSIT METAL CHEM 2012. [DOI: 10.1007/s11243-012-9633-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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