1
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Jensen SK, Neumann MS, Frederiksen R, Skavenborg ML, Larsen MC, Wessel SE, Jeppesen JO. Mechanistic studies of isomeric [2]rotaxanes consisting of two different tetrathiafulvalene units reveal that the movement of cyclobis(paraquat- p-phenylene) can be controlled. Chem Sci 2023; 14:12366-12378. [PMID: 37969595 PMCID: PMC10631196 DOI: 10.1039/d3sc04408d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 10/23/2023] [Indexed: 11/17/2023] Open
Abstract
Controlling the movement in artificial molecular machines is a key challenge that needs to be solved before their full potential can be harnessed. In this study, two isomeric tri-stable [2]rotaxanes 1·4PF6 and 2·4PF6 incorporating both a tetrathiafulvalene (TTF) and a monopyrrolotetrathiafulvalene (MPTTF) unit in the dumbbell component have been synthesised to measure the energy barriers when the tetracationic cyclobis(paraquat-p-phenylene) (CBPQT4+) ring moves across either a TTF2+ or an MPTTF2+ dication. By strategically exchanging one of the thiomethyl barriers on either the TTF unit or the MPTTF unit with the bulkier thioethyl group, the movement of the CBPQT4+ ring in 14+ and 24+ can be controlled to take place in only one direction upon tetra-oxidation. Cyclic voltammetry and 1H NMR spectroscopy were used to investigate the switching mechanism and it was found that upon tetra-oxidation of 14+ and 24+, the CBPQT4+ ring moves first to a position where it is located between the TTF2+ and MPTTF2+ dications producing high-energy co-conformations which slowly interconvert into thermodynamically more stable co-conformations. The kinetics of the movement occurring in the tetra-oxidised [2]rotaxanes 18+ and 28+ were studied at different temperatures allowing the free energy of the transition state, when CBPQT4+ moves across TTF2+ (21.5 kcal mol-1) and MPTTF2+ (20.3 kcal mol-1) at 298 K, to be determined. These results demonstrate for the first time that the combination of a TTF and an MPTTF unit can be used to induce directional movement of the CBPQT4+ ring in molecular machines with a 90% efficiency.
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Affiliation(s)
- Sofie K Jensen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
| | - Mathias S Neumann
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
| | - Rikke Frederiksen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
| | - Mathias L Skavenborg
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
| | - Mads C Larsen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
| | - Stinne E Wessel
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
| | - Jan O Jeppesen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55 5230 Odense Denmark
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2
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Neumann MS, Smith AF, Jensen SK, Frederiksen R, Skavenborg ML, Jeppesen JO. Evaluating the energy landscape of an out-of-equilibrium bistable [2]rotaxane containing monopyrrolotetrathiafulvalene. Chem Commun (Camb) 2023; 59:6335-6338. [PMID: 37067575 DOI: 10.1039/d3cc00360d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2023]
Abstract
The unique redox properties of monopyrrolotetrathiafulvalene can be used to induce directional movement in interlocked molecules. In this study, the kinetics for the directional movement of cyclobis(paraquat-p-phenylene) across the dioxidised monopyrrolotetrathiafulvalene in a [2]rotaxane is quantified by time-resolved 1H NMR spectroscopy.
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Affiliation(s)
- Mathias S Neumann
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
| | - Amanda F Smith
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
| | - Sofie K Jensen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
| | - Rikke Frederiksen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
| | - Mathias L Skavenborg
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
| | - Jan O Jeppesen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.
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3
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Chen X, Chen H, Fraser Stoddart J. The Story of the Little Blue Box: A Tribute to Siegfried Hünig. Angew Chem Int Ed Engl 2023; 62:e202211387. [PMID: 36131604 PMCID: PMC10099103 DOI: 10.1002/anie.202211387] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Indexed: 02/02/2023]
Abstract
The tetracationic cyclophane, cyclobis(paraquat-p-phenylene), also known as the little blue box, constitutes a modular receptor that has facilitated the discovery of many host-guest complexes and mechanically interlocked molecules during the past 35 years. Its versatility in binding small π-donors in its tetracationic state, as well as forming trisradical tricationic complexes with viologen radical cations in its doubly reduced bisradical dicationic state, renders it valuable for the construction of various stimuli-responsive materials. Since the first reports in 1988, the little blue box has been featured in over 500 publications in the literature. All this research activity would not have been possible without the seminal contributions carried out by Siegfried Hünig, who not only pioneered the syntheses of viologen-containing cyclophanes, but also revealed their rich redox chemistry in addition to their ability to undergo intramolecular π-dimerization. This Review describes how his pioneering research led to the design and synthesis of the little blue box, and how this redox-active host evolved into the key component of molecular shuttles, switches, and machines.
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Affiliation(s)
- Xiao‐Yang Chen
- Department of ChemistryNorthwestern University2145 Sheridan RoadEvanstonIllinois 60208USA
| | - Hongliang Chen
- Stoddart Institute of Molecular ScienceDepartment of ChemistryZhejiang UniversityHangzhou310027China
- ZJU-Hangzhou Global Scientific and Technological Innovation CenterHangzhou311215China
| | - J. Fraser Stoddart
- Department of ChemistryNorthwestern University2145 Sheridan RoadEvanstonIllinois 60208USA
- Stoddart Institute of Molecular ScienceDepartment of ChemistryZhejiang UniversityHangzhou310027China
- ZJU-Hangzhou Global Scientific and Technological Innovation CenterHangzhou311215China
- School of ChemistryUniversity of New South WalesSydneyNSW 2052Australia
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4
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Kristensen R, Neumann MS, Andersen SS, Stein PC, Flood AH, Jeppesen JO. Quantifying the barrier for the movement of cyclobis(paraquat- p-phenylene) over the dication of monopyrrolotetrathiafulvalene. Org Biomol Chem 2022; 20:2233-2248. [PMID: 35107116 DOI: 10.1039/d1ob02263f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A bistable [2]pseudorotaxane 1⊂CBPQT·4PF6 and a bistable [2]rotaxane 2·4PF6 have been synthesised to measure the height of an electrostatic barrier produced by double molecular oxidation (0 to +2). Both systems have monopyrrolotetrathiafulvalene (MPTTF) and oxyphenylene (OP) as stations for cyclobis(paraquat-p-phenylene) (CBPQT4+). They have a large stopper at one end while the second stopper in 24+ is composed of a thioethyl (SEt) group and a thiodiethyleneglycol (TDEG) substituent, whereas in 1⊂CBPQT4+, the SEt group has been replaced with a less bulky thiomethyl (SMe) group. This seemingly small difference in the substituents on the MPTTF unit leads to profound changes when comparing the physical properties of the two systems allowing for the first measurement of the deslipping of the CBPQT4+ ring over an MPTTF2+ unit in the [2]pseudorotaxane. Cyclic voltammetry and 1H NMR spectroscopy were used to investigate the switching mechanism for 1⊂CBPQT·MPTTF4+ and 2·MPTTF4+, and it was found that CBPQT4+ moves first to the OP station producing 1⊂CBPQT·OP6+ and 2·OP6+, respectively, upon oxidation of the MPTTF unit. The kinetics of the complexation/decomplexation process occurring in 1⊂CBPQT·MPTTF4+ and in 1⊂CBPQT·OP6+ were studied, allowing the free energy of the transition state when CBPQT4+ moves across a neutral MPTTF unit (17.0 kcal mol-1) or a di-oxidised MPTTF2+ unit (24.0 kcal mol-1) to be determined. These results demonstrate that oxidation of the MPTTF unit to MPTTF2+ increases the energy barrier that the CBPQT4+ ring must overcome for decomplexation to occur by 7.0 kcal mol-1.
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Affiliation(s)
- Rikke Kristensen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark.
| | - Mathias S Neumann
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark.
| | - Sissel S Andersen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark.
| | - Paul C Stein
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark.
| | - Amar H Flood
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, IN 47405-7102, USA
| | - Jan O Jeppesen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark.
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Jensen M, Kristensen R, Andersen SS, Bendixen D, Jeppesen JO. Probing the Electrostatic Barrier of Tetrathiafulvalene Dications using a Tetra-stable Donor-Acceptor [2]Rotaxane. Chemistry 2020; 26:6165-6175. [PMID: 32049376 DOI: 10.1002/chem.202000302] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2020] [Revised: 02/09/2020] [Indexed: 12/18/2022]
Abstract
A tetra-stable donor-acceptor [2]rotaxane 1⋅4PF6 has been synthesized. The dumbbell component is comprised of an oxyphenylene (OP), a tetrathiafulvalene (TTF), a monopyrrolo-TTF (MPTTF), and a hydroquinone (HQ) unit, which can act as recognition sites (stations) for the tetra-cationic cyclophane cyclobis(paraquat-p-phenylene) (CBPQT4+ ). The TTF and the MPTTF stations are located in the middle of the dumbbell component and are connected by a triethylene glycol (TEG) chain in such a way that the pyrrole moiety of the MPTTF station points toward the TTF station, while the TTF and MPTTF stations are flanked by the OP and HQ stations on their left hand side and right hand side, respectively. The [2]rotaxane was characterized in solution by 1 H NMR spectroscopy and cyclic voltammetry. The spectroscopic data revealed that the majority (77 %) of the tetra-stable [2]rotaxane 14+ exist as the translational isomer 1⋅MPTTF4+ in which the CBPQT4+ ring encircles the MPTTF station. The electrochemical studies showed that CBPQT4+ in 1⋅MPTTF4+ undergoes ring translation as result of electrostatic repulsion from the oxidized MPTTF unit. Following tetra-oxidation of 1⋅MPTTF4+ , a high-energy state of 18+ was obtained (i.e., 1⋅TEG8+ ) in which the CBPQT4+ ring was located on the TEG linker connecting the di-oxidized TTF2+ and MPTTF2+ units. 1 H NMR spectroscopy carried out in CD3 CN at 298 K on a chemically oxidized sample of 1⋅MPTTF4+ revealed that the metastable state 1⋅TEG8+ is only short-lived with a lifetime of a few minutes and it was found that 70 % of the positively charged CBPQT4+ ring moved from 1⋅TEG8+ to the HQ station, while 30 % moved to the much weaker OP station. These results clearly demonstrate that the CBPQT4+ ring can cross both an MPTTF2+ and a TTF2+ electrostatic barrier and that the free energy of activation required to cross MPTTF2+ is ca. 0.5 kcal mol-1 smaller as compared to TTF2+ .
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Affiliation(s)
- Morten Jensen
- Department of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
| | - Rikke Kristensen
- Department of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
| | - Sissel S Andersen
- Department of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
| | - Dan Bendixen
- Department of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
| | - Jan O Jeppesen
- Department of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230, Odense M, Denmark
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6
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Kristensen R, Andersen SS, Olsen G, Jeppesen JO. Probing the Role of Glycol Chain Lengths in π-Donor–Acceptor [2]Pseudorotaxanes Based on Monopyrrolo-Tetrathiafulvalene and Cyclobis(paraquat-p-phenylene). J Org Chem 2017; 82:1371-1379. [DOI: 10.1021/acs.joc.6b02466] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Rikke Kristensen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Sissel S. Andersen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Gunnar Olsen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Jan O. Jeppesen
- Department of Physics, Chemistry,
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
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7
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Matsuoka Y, Mutoh Y, Azumaya I, Kikkawa S, Kasama T, Saito S. Synthesis and Shuttling Behavior of [2]Rotaxanes with a Pyrrole Moiety. J Org Chem 2016; 81:3479-87. [PMID: 26949996 DOI: 10.1021/acs.joc.5b02911] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We synthesized [2]rotaxanes with a pyrrole moiety from a [2]rotaxane with a 1,3-diynyl moiety. The conversion of the 1,3-diynyl moiety of the axle component to the pyrrole moiety was accomplished by a Cu-mediated cycloaddition of anilines. The cycloaddition reaction was accelerated when the [2]rotaxane was used as the substrate. The effect of the structure of the pyrrole moiety on the rate of the shuttling was studied.
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Affiliation(s)
- Yusuke Matsuoka
- Department of Chemistry, Faculty of Science, Tokyo University of Science , Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
| | - Yuichiro Mutoh
- Department of Chemistry, Faculty of Science, Tokyo University of Science , Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
| | - Isao Azumaya
- Faculty of Pharmaceutical Sciences, Toho University , 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
| | - Shoko Kikkawa
- Faculty of Pharmaceutical Sciences, Toho University , 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
| | - Takeshi Kasama
- Research Center for Medical and Dental Sciences, Tokyo Medical and Dental University , 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan
| | - Shinichi Saito
- Department of Chemistry, Faculty of Science, Tokyo University of Science , Kagurazaka, Shinjuku, Tokyo 162-8601, Japan
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8
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Affiliation(s)
- Sundus Erbas-Cakmak
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - David A. Leigh
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Charlie T. McTernan
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Alina
L. Nussbaumer
- School of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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9
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Rezaeivala M, Keypour H. Schiff base and non-Schiff base macrocyclic ligands and complexes incorporating the pyridine moiety – The first 50 years. Coord Chem Rev 2014. [DOI: 10.1016/j.ccr.2014.06.007] [Citation(s) in RCA: 173] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Young PG, Hirose K, Tobe Y. Axle length does not affect switching dynamics in degenerate molecular shuttles with rigid spacers. J Am Chem Soc 2014; 136:7899-906. [PMID: 24813375 DOI: 10.1021/ja412671k] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
For a series of [2]rotaxane molecular shuttles possessing linear rigid rod-like axles of varying lengths between degenerate recognition sites, the activation barrier for shuttling motion was clearly shown to be constant. Moreover, dynamic NMR studies have revealed that both the entropic and enthalpic contributions to the shuttling motion remain constant regardless of the actual length of the rigid rod-like axles employed herein.
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Affiliation(s)
- Philip G Young
- Division of Frontier Materials Science, Graduate School of Engineering Science, Osaka University , 1-3 Machikaneyama, Toyonaka 560-8531, Japan
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11
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Andersen SS, Share AI, Poulsen BLC, Kørner M, Duedal T, Benson CR, Hansen SW, Jeppesen JO, Flood AH. Mechanistic Evaluation of Motion in Redox-Driven Rotaxanes Reveals Longer Linkers Hasten Forward Escapes and Hinder Backward Translations. J Am Chem Soc 2014; 136:6373-84. [DOI: 10.1021/ja5013596] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sissel S. Andersen
- Department
of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
- Department
of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Andrew I. Share
- Department
of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Bjørn La Cour Poulsen
- Department
of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Mads Kørner
- Department
of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Troels Duedal
- Department
of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Christopher R. Benson
- Department
of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Stinne W. Hansen
- Department
of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Jan O. Jeppesen
- Department
of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - Amar H. Flood
- Department
of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, United States
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12
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Fahrenbach AC, Bruns CJ, Li H, Trabolsi A, Coskun A, Stoddart JF. Ground-state kinetics of bistable redox-active donor-acceptor mechanically interlocked molecules. Acc Chem Res 2014; 47:482-93. [PMID: 24341283 DOI: 10.1021/ar400161z] [Citation(s) in RCA: 94] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The ability to design and confer control over the kinetics of theprocesses involved in the mechanisms of artificial molecular machines is at the heart of the challenge to create ones that can carry out useful work on their environment, just as Nature is wont to do. As one of the more promising forerunners of prototypical artificial molecular machines, chemists have developed bistable redox-active donor-acceptor mechanically interlocked molecules (MIMs) over the past couple of decades. These bistable MIMs generally come in the form of [2]rotaxanes, molecular compounds that constitute a ring mechanically interlocked around a dumbbell-shaped component, or [2]catenanes, which are composed of two mechanically interlocked rings. As a result of their interlocked nature, bistable MIMs possess the inherent propensity to express controllable intramolecular, large-amplitude, and reversible motions in response to redox stimuli. In this Account, we rationalize the kinetic behavior in the ground state for a large assortment of these types of bistable MIMs, including both rotaxanes and catenanes. These structures have proven useful in a variety of applications ranging from drug delivery to molecular electronic devices. These bistable donor-acceptor MIMs can switch between two different isomeric states. The favored isomer, known as the ground-state co-conformation (GSCC) is in equilibrium with the less favored metastable state co-conformation (MSCC). The forward (kf) and backward (kb) rate constants associated with this ground-state equilibrium are intimately connected to each other through the ground-state distribution constant, KGS. Knowing the rate constants that govern the kinetics and bring about the equilibration between the MSCC and GSCC, allows researchers to understand the operation of these bistable MIMs in a device setting and apply them toward the construction of artificial molecular machines. The three biggest influences on the ground-state rate constants arise from (i) ground-state effects, the energy required to breakup the noncovalent bonding interactions that stabilize either the GSCC or MSCC, (ii) spacer effects, where the structures overcome additional barriers, either steric or electrostatic or both, en route from one co-conformation to the other, and (iii) the physical environment of the bistable MIMs. By managing all three of these effects, chemists can vary these rate constants over many orders of magnitude. We also discuss progress toward achieving mechanostereoselective motion, a key principle in the design and realization of artificial molecular machines capable of doing work at the molecular level, by the strategic implementation of free energy barriers to intramolecular motion.
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Affiliation(s)
- Albert C. Fahrenbach
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Carson J. Bruns
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Hao Li
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Ali Trabolsi
- Department of Chemistry, New York University, Abu Dhabi, United Arab Emirates
| | - Ali Coskun
- NanoCentury Institute and Graduate School of Energy, Environment, Water, and Sustainability (World Class University), Korea Advanced Institute of Science and Technology (KAIST) 373-1 Guseong Dong, Yuseong Gu, Daejeon 305-701, Republic of Korea
| | - J. Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
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13
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Fahrenbach AC, Warren SC, Incorvati JT, Avestro AJ, Barnes JC, Stoddart JF, Grzybowski BA. Organic switches for surfaces and devices. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2013; 25:331-48. [PMID: 22933356 DOI: 10.1002/adma.201201912] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Indexed: 05/13/2023]
Abstract
The pursuit to achieve miniaturization has tantalized researchers across the fields of chemistry, physics, biology, materials science and engineering for over half a century because of its many alluring potential applications. As alternatives to traditional "top-down" manufacturing, "bottom-up" approaches, originating from the (supra)molecular level, have enabled researchers to develop switches which can be manipulated on surfaces at nanoscale dimensions with deft precision using simple external triggers. Once on surfaces, these organic switches have been shown to modulate both the physical and chemical surface properties. In this Progress Report, we shed light on recent advances made in our laboratories towards integrated systems using all-organic switches on a variety of substrates. Design concepts are revealed, as well as the overall impact of all-organic switches on the properties of their substrates, while emphasizing the considerable promise and formidable challenges these advanced composite materials pose when it comes to conferring function on them.
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Affiliation(s)
- Albert C Fahrenbach
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, IL 60208, USA
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14
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Zhang H, Zhou B, Li H, Qu DH, Tian H. A Ferrocene-Functionalized [2]Rotaxane with Two Fluorophores as Stoppers. J Org Chem 2012; 78:2091-8. [DOI: 10.1021/jo302107a] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Hui Zhang
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
| | - Bin Zhou
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
| | - Hong Li
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
| | - Da-Hui Qu
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
| | - He Tian
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
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15
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Fahrenbach AC, Zhu Z, Cao D, Liu WG, Li H, Dey SK, Basu S, Trabolsi A, Botros YY, Goddard WA, Stoddart JF. Radically Enhanced Molecular Switches. J Am Chem Soc 2012; 134:16275-88. [DOI: 10.1021/ja306044r] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Albert C. Fahrenbach
- NanoCentury
KAIST Institute and
Graduate School of EEWS (WCU), Korea Advanced Institute of Science and Technology (KAIST), 373-1 Guseong Dong,
Yuseong Gu, Daejeon 305-701 Republic of Korea
| | | | - Dennis Cao
- NanoCentury
KAIST Institute and
Graduate School of EEWS (WCU), Korea Advanced Institute of Science and Technology (KAIST), 373-1 Guseong Dong,
Yuseong Gu, Daejeon 305-701 Republic of Korea
| | - Wei-Guang Liu
- Materials and Process Simulation
Center, California Institute of Technology, Pasadena, California 91125, United States
| | | | | | | | - Ali Trabolsi
- Center for Science and Engineering, New York University Abu Dhabi, Abu Dhabi, United Arab
Emirates
| | - Youssry Y. Botros
- Intel Laboratories, Building RNB-6-61, 2200 Mission College Blvd., Santa Clara, California
95054-1549, United States
- National Center for Nano Technology Research, King Abdulaziz City for
Science and Technology, P.O. Box 6086, Riyadh 11442, Kingdom of Saudi
Arabia
| | - William A. Goddard
- NanoCentury
KAIST Institute and
Graduate School of EEWS (WCU), Korea Advanced Institute of Science and Technology (KAIST), 373-1 Guseong Dong,
Yuseong Gu, Daejeon 305-701 Republic of Korea
- Materials and Process Simulation
Center, California Institute of Technology, Pasadena, California 91125, United States
| | - J. Fraser Stoddart
- NanoCentury
KAIST Institute and
Graduate School of EEWS (WCU), Korea Advanced Institute of Science and Technology (KAIST), 373-1 Guseong Dong,
Yuseong Gu, Daejeon 305-701 Republic of Korea
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Zhang KD, Zhao X, Wang GT, Liu Y, Zhang Y, Lu HJ, Jiang XK, Li ZT. Foldamers in pseudo[2]rotaxanes and [2]rotaxanes: tuning the switching kinetics and metastability. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.10.116] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Wang C, Cao D, Fahrenbach AC, Fang L, Olson MA, Friedman DC, Basu S, Dey SK, Botros YY, Stoddart JF. Solvent-dependent ground-state distributions in a donor-acceptor redox-active bistable [2]catenane. J PHYS ORG CHEM 2012. [DOI: 10.1002/poc.1960] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Cheng Wang
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
| | - Dennis Cao
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
- NanoCentury KAIST Institute and Graduate School of EEWS (WCU); Korea Advanced Institute of Science and Technology (KAIST)373-1; Guseong Dong Yuseong Gu Daejeon 305-701 Korea
| | - Albert C. Fahrenbach
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
- NanoCentury KAIST Institute and Graduate School of EEWS (WCU); Korea Advanced Institute of Science and Technology (KAIST)373-1; Guseong Dong Yuseong Gu Daejeon 305-701 Korea
| | - Lei Fang
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
| | - Mark A. Olson
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
| | - Douglas C. Friedman
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
| | - Subhadeep Basu
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
| | - Sanjeev K. Dey
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
| | - Youssry Y. Botros
- Department of Materials Science and Engineering; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
- Intel Labs; Building RNB-6-61, 2200 Mission College Blvd. Santa Clara CA 95054 USA
- National Center for Nano Technology Research; King Abdulaziz City for Science and Technology (KACST); Riyadh 11442 Saudi Arabia
| | - J. Fraser Stoddart
- Department of Chemistry; Northwestern University; 2145 Sheridan Road Evanston IL 60208 USA
- NanoCentury KAIST Institute and Graduate School of EEWS (WCU); Korea Advanced Institute of Science and Technology (KAIST)373-1; Guseong Dong Yuseong Gu Daejeon 305-701 Korea
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18
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Andersen SS, Jensen M, Sørensen A, Miyazaki E, Takimiya K, Laursen BW, Flood AH, Jeppesen JO. Anion effects on the cyclobis(paraquat-p-phenylene) host. Chem Commun (Camb) 2012; 48:5157-9. [DOI: 10.1039/c2cc31225e] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Coskun A, Spruell JM, Barin G, Dichtel WR, Flood AH, Botros YY, Stoddart JF. High hopes: can molecular electronics realise its potential? Chem Soc Rev 2012; 41:4827-59. [PMID: 22648395 DOI: 10.1039/c2cs35053j] [Citation(s) in RCA: 261] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Ali Coskun
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, IL 60208, USA
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20
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Wang C, Olson MA, Fang L, Benítez D, Tkatchouk E, Basu S, Basuray AN, Zhang D, Zhu D, Goddard WA, Stoddart JF. Isolation by crystallization of translational isomers of a bistable donor-acceptor [2]catenane. Proc Natl Acad Sci U S A 2010; 107:13991-6. [PMID: 20663950 PMCID: PMC2922539 DOI: 10.1073/pnas.1009302107] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The template-directed synthesis of a bistable donor-acceptor [2]catenane wherein both translational isomers--one in which a tetrathiafulvalene unit in a mechanically interlocked crown ether occupies the cavity of a cyclobis(paraquat-p-phenylene) ring and the other in which a 1,5-dioxynaphthalene unit in the crown ether resides inside the cavity of the tetracationic cyclophane--exist in equilibrium in solution, has led to the isolation and separation by hand picking of single crystals colored red and green, respectively. These two crystalline co-conformations have been characterized separately at both the molecular and supramolecular levels, and also by dynamic NMR spectroscopy in solution where there is compelling evidence that the mechanically interlocked molecules are present as a complex mixture of translational, configurational, and conformational isomers wherein the isomerization is best described as being a highly dynamic and adaptable phenomenon.
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Affiliation(s)
- Cheng Wang
- Department of Chemistry, Northwestern University, Evanston, IL 60208
| | - Mark A. Olson
- Department of Chemistry, Northwestern University, Evanston, IL 60208
| | - Lei Fang
- Department of Chemistry, Northwestern University, Evanston, IL 60208
| | - Diego Benítez
- Materials and Process Simulation Center, California Institute of Technology, Pasadena, CA 91125; and
| | - Ekaterina Tkatchouk
- Materials and Process Simulation Center, California Institute of Technology, Pasadena, CA 91125; and
| | - Subhadeep Basu
- Department of Chemistry, Northwestern University, Evanston, IL 60208
| | - Ashish N. Basuray
- Department of Chemistry, Northwestern University, Evanston, IL 60208
| | - Deqing Zhang
- Beijing National Laboratory for Molecular Sciences, Organic Solids Laboratory, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Daoben Zhu
- Beijing National Laboratory for Molecular Sciences, Organic Solids Laboratory, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - William A. Goddard
- Materials and Process Simulation Center, California Institute of Technology, Pasadena, CA 91125; and
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21
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Share AI, Parimal K, Flood AH. Bilability is defined when one electron is used to switch between concerted and stepwise pathways in Cu(I)-based bistable [2/3]pseudorotaxanes. J Am Chem Soc 2010; 132:1665-75. [PMID: 20070081 DOI: 10.1021/ja908877d] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Supramolecular switches operate as simple machines by using a stimulus to turn stations off and on, generating thermodynamic differences that define bistability and enable motion. What has not been previously investigated, yet is required to gain further control over molecular movements for complex operations, is an understanding of how the same stimulus can also switch pathways off and on, thus, defining the kinetic property of bilability. To address this challenge, the mechanisms of the forward and return reactions of redox-switchable Cu(I)-based [2/3]pseudorotaxanes have been quantitatively characterized utilizing mechanistic cyclic voltammetry and employing a series of isosteric bis-bidentate ligands. First, the bistability of the switch is retained across the series of ligands: Reduction of the ligand drives the reaction forward where a [2]pseudorotaxane switches into a reduced [3]pseudorotaxane and reoxidation drives the switching cycle back to the beginning. Second, the switch is bilabile with the forward reaction following an association-activated interchange pathway (concerted), whereas the reverse reaction follows a different dissociation-based dethreading pathway (stepwise). The forward reaction is more sensitive to denticity (bidentate tetrazinyl ligand, k(2) = 12,000 M(-1) s(-1), versus the monodentate pyrazinyl ligand, k(2) = 1500 M(-1) s(-1)) than to electronics (k(2) = 12,000 M(-1) s(-1) for methyl and trifluoromethyl substituents). The rate of return with the pyrazinyl ligand is k(1) = 50 s(-1). Consequently, both the mechanism and the thermodynamics of switching are stimuli dependent; they change with the oxidation state of the ligand. These findings have implications for the future design of molecular motors, which can be built from systems displaying allosterically coupled bistability and bilability.
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Affiliation(s)
- Andrew I Share
- Department of Chemistry, University of Indiana, Bloomington, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, USA
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Affiliation(s)
- Akira Harada
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka 560-0043, Japan
| | - Akihito Hashidzume
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka 560-0043, Japan
| | - Hiroyasu Yamaguchi
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka 560-0043, Japan
| | - Yoshinori Takashima
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka 560-0043, Japan
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23
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Olson MA, Coskun A, Klajn R, Fang L, Dey SK, Browne KP, Grzybowski BA, Stoddart JF. Assembly of polygonal nanoparticle clusters directed by reversible noncovalent bonding interactions. NANO LETTERS 2009; 9:3185-3190. [PMID: 19694461 DOI: 10.1021/nl901385c] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The reversible molecular template-directed self-assembly of gold nanoparticles (AuNPs), a process which relies solely on noncovalent bonding interactions, has been demonstrated by high-resolution transmission electron microscopy (HR-TEM). By employing a well-known host-guest binding motif, the AuNPs have been systemized into discrete dimers, trimers, and tetramers. These nanoparticulate twins, triplets, and quadruplets, which can be disassembled and reassembled either chemically or electrochemically, can be coalesced into larger, permanent polygonal structures by thermal treatment using a focused HR-TEM electron beam.
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Affiliation(s)
- Mark A Olson
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
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24
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Juluri BK, Kumar AS, Liu Y, Ye T, Yang YW, Flood AH, Fang L, Stoddart JF, Weiss PS, Huang TJ. A mechanical actuator driven electrochemically by artificial molecular muscles. ACS NANO 2009; 3:291-300. [PMID: 19236063 DOI: 10.1021/nn8002373] [Citation(s) in RCA: 176] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
A microcantilever, coated with a monolayer of redox-controllable, bistable [3]rotaxane molecules (artificial molecular muscles), undergoes reversible deflections when subjected to alternating oxidizing and reducing electrochemical potentials. The microcantilever devices were prepared by precoating one surface with a gold film and allowing the palindromic [3]rotaxane molecules to adsorb selectively onto one side of the microcantilevers, utilizing thiol-gold chemistry. An electrochemical cell was employed in the experiments, and deflections were monitored both as a function of (i) the scan rate (< or =20 mV s(-1)) and (ii) the time for potential step experiments at oxidizing (>+0.4 V) and reducing (<+0.2 V) potentials. The different directions and magnitudes of the deflections for the microcantilevers, which were coated with artificial molecular muscles, were compared with (i) data from nominally bare microcantilevers precoated with gold and (ii) those coated with two types of control compounds, namely, dumbbell molecules to simulate the redox activity of the palindromic bistable [3]rotaxane molecules and inactive 1-dodecanethiol molecules. The comparisons demonstrate that the artificial molecular muscles are responsible for the deflections, which can be repeated over many cycles. The microcantilevers deflect in one direction following oxidation and in the opposite direction upon reduction. The approximately 550 nm deflections were calculated to be commensurate with forces per molecule of approximately 650 pN. The thermal relaxation that characterizes the device's deflection is consistent with the double bistability associated with the palindromic [3]rotaxane and reflects a metastable contracted state. The use of the cooperative forces generated by these self-assembled, nanometer-scale artificial molecular muscles that are electrically wired to an external power supply constitutes a seminal step toward molecular-machine-based nanoelectromechanical systems (NEMS).
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Affiliation(s)
- Bala Krishna Juluri
- Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, Pennsylvania 16802-6812, USA
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25
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Yoon I, Benítez D, Zhao YL, Miljanić OS, Kim SY, Tkatchouk E, Leung KCF, Khan SI, Goddard WA, Stoddart JF. Functionally rigid and degenerate molecular shuttles. Chemistry 2009; 15:1115-22. [PMID: 19105194 DOI: 10.1002/chem.200802096] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The preparation and dynamic behavior of two functionally rigid and degenerate [2]rotaxanes (14 PF(6) and 24 PF(6)) in which a pi-electron deficient tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPQT(4+)) ring, shuttles back and forth between two pi-electron-rich naphthalene (NP) stations by making the passage along an ethynyl-phenylene-(PH)-ethynyl or butadiyne rod, are described. The [2]rotaxanes were synthesized by using the clipping approach to template-directed synthesis, and were characterized by NMR spectroscopic and mass spectrometric analyses. (1)H NMR spectra of both [2]rotaxanes show evidence for the formation of mechanically interlocked structures, resulting in the upfield shifts of the resonances for key protons on the dumbbell-shaped components. In particular, the signals for the peri protons on the NP units in the dumbbell-shaped components experienced significant upfield shifts at low temperatures, just as has been observed in the flexible [2]rotaxanes. Interestingly, the resonances for the same protons did not exhibit a significant upfield shift at 298 K, but rather only a modest shift. This phenomenon arises from the much reduced binding of the ethynyl-NP unit compared to the 1,5-dioxy-NP unit. This effect, in turn, increases the shuttling rate when compared to the 1,5-dioxy-NP-based rotaxane systems investigated previously. The kinetic and thermodynamic data of the shuttling behavior of the CBPQT(4+) ring between the NP units were obtained by variable-temperature NMR spectroscopy and using the coalescence method to calculate the free energies of activation (DeltaG(c) ( not equal)) of 9.6 and 10.3 kcal mol(-1) for 14 PF(6) and 24 PF(6), respectively, probed by using the rotaxane's alpha-bipyridinium protons. The solid-state structure of the free dumbbell-shaped compound (3) shows the fully rigid ethynyl-PH-ethynyl linker with a length (8.1 A) twice as long as that (3.8 A) of the butadiyne linker. Full-atomistic simulations were carried out with the DREIDING force field (FF) to probe the degenerate molecular shuttling processes, and afforded shuttling energy barriers (DeltaG( not equal)=10.4 kcal mol(-1) for 14 PF(6) and 24 PF(6)) that are in good agreement with the experimental values (DeltaG(c) ( not equal)=9.6 and 10.3 kcal mol(-1) for 14 PF(6) and 24 PF(6), respectively, probed by using their alpha-bipyridinium protons).
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Affiliation(s)
- Il Yoon
- Department of Chemistry and Biochemistry, University of California, Los Angeles, 405 Hilgard Avenue, Los Angeles, CA 90095, USA
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Olson MA, Braunschweig AB, Ikeda T, Fang L, Trabolsi A, Slawin AMZ, Khan SI, Stoddart JF. Thermodynamic forecasting of mechanically interlocked switches. Org Biomol Chem 2009; 7:4391-405. [DOI: 10.1039/b911874h] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Canevet D, Sallé M, Zhang G, Zhang D, Zhu D. Tetrathiafulvalene (TTF) derivatives: key building-blocks for switchable processes. Chem Commun (Camb) 2009:2245-69. [PMID: 19377656 DOI: 10.1039/b818607n] [Citation(s) in RCA: 421] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- David Canevet
- Université d'Angers, CIMA UMR CNRS 6200-UFR Sciences, 2 boulevard Lavoisier, 49045 Angers, France
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29
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Nielsen K, Levillain E, Lynch V, Sessler J, Jeppesen J. Tetrathiafulvalene Porphyrins. Chemistry 2008; 15:506-16. [DOI: 10.1002/chem.200801636] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Jimenez R, Martin C, Lopez-Cornejo P. Formation of a Rotaxane from the End-Capping Process of a Pseudorotaxane. Effects of the Solvent. J Phys Chem B 2008; 112:11610-5. [DOI: 10.1021/jp804918t] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- R. Jimenez
- Departamento de Química Física. Universidad de Sevilla, c/ Prof. García González s/n, 41012 Sevilla, SPAIN
| | - C. Martin
- Departamento de Química Física. Universidad de Sevilla, c/ Prof. García González s/n, 41012 Sevilla, SPAIN
| | - P. Lopez-Cornejo
- Departamento de Química Física. Universidad de Sevilla, c/ Prof. García González s/n, 41012 Sevilla, SPAIN
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33
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Spruell J, Dichtel W, Heath J, Stoddart J. A One-Pot Synthesis of Constitutionally Unsymmetrical Rotaxanes Using Sequential CuI-Catalyzed Azide–Alkyne Cycloadditions. Chemistry 2008; 14:4168-77. [DOI: 10.1002/chem.200800067] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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34
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Azov VA, Gómez R, Stelten J. Synthesis of electrochemically responsive TTF-based molecular tweezers: evidence of tight intramolecular TTF pairing in solution. Tetrahedron 2008. [DOI: 10.1016/j.tet.2007.11.110] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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35
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Nygaard S, Laursen B, Hansen T, Bond A, Flood A, Jeppesen J. Preparation of Cyclobis(paraquat-p-phenylene)-Based [2]Rotaxanes Without Flexible Glycol Chains. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200701722] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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36
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Nygaard S, Laursen BW, Hansen TS, Bond AD, Flood AH, Jeppesen JO. Preparation of Cyclobis(paraquat-p-phenylene)-Based [2]Rotaxanes Without Flexible Glycol Chains. Angew Chem Int Ed Engl 2007; 46:6093-7. [PMID: 17628474 DOI: 10.1002/anie.200701722] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Sune Nygaard
- Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
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37
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Aprahamian I, Yasuda T, Ikeda T, Saha S, Dichtel W, Isoda K, Kato T, Stoddart J. A Liquid-Crystalline Bistable [2]Rotaxane. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200700305] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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38
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Aprahamian I, Yasuda T, Ikeda T, Saha S, Dichtel WR, Isoda K, Kato T, Stoddart JF. A Liquid-Crystalline Bistable [2]Rotaxane. Angew Chem Int Ed Engl 2007; 46:4675-9. [PMID: 17492810 DOI: 10.1002/anie.200700305] [Citation(s) in RCA: 125] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Ivan Aprahamian
- California NanoSystems Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, 405 Hilgard Avenue, Los Angeles, CA 90095-1569, USA
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Braunschweig AB, Dichtel WR, Miljanić OS, Olson MA, Spruell JM, Khan SI, Heath JR, Stoddart JF. Modular Synthesis and Dynamics of a Variety of Donor–Acceptor Interlocked Compounds Prepared by Click Chemistry. Chem Asian J 2007; 2:634-47. [PMID: 17465409 DOI: 10.1002/asia.200700035] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
A series of donor-acceptor [2]-, [3]-, and [4]rotaxanes and self-complexes ([1]rotaxanes) have been synthesized by a threading-followed-by-stoppering approach, in which the precursor pseudorotaxanes are fixed by using Cu(I)-catalyzed Huisgen 1,3-dipolar cycloaddition to attach the required stoppers. This alternative approach to forming rotaxanes of the donor-acceptor type, in which the donor is a 1,5-dioxynaphthalene unit and the acceptor is the tetracationic cyclophane cyclobis(paraquat-p-phenylene), proceeds with enhanced yields relative to the tried and tested synthetic strategies, which involve the clipping of the cyclophane around a preformed dumbbell containing pi-electron-donating recognition sites. The new synthetic approach is amenable to application to highly convergent sequences. To extend the scope of this reaction, we constructed [2]rotaxanes in which one of the phenylene rings of the tetracationic cyclophane is perfluorinated, a feature which significantly weakens its association with pi-electron-rich guests. The activation barrier for the shuttling of the cyclophane over a spacer containing two triazole rings was determined to be (15.5+/-0.1) kcal mol(-1) for a degenerate two-station [2]rotaxane, a value similar to that previously measured for analogous degenerate compounds containing aromatic or ethylene glycol spacers. The triazole rings do not seem to perturb the shuttling process significantly; this property bodes well for their future incorporation into bistable molecular switches.
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Affiliation(s)
- Adam B Braunschweig
- The California NanoSystems Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, 405 Hilgard Avenue, Los Angeles, CA 90095, USA
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Kay ER, Leigh DA, Zerbetto F. Synthetic molecular motors and mechanical machines. Angew Chem Int Ed Engl 2007; 46:72-191. [PMID: 17133632 DOI: 10.1002/anie.200504313] [Citation(s) in RCA: 2064] [Impact Index Per Article: 114.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The widespread use of controlled molecular-level motion in key natural processes suggests that great rewards could come from bridging the gap between the present generation of synthetic molecular systems, which by and large rely upon electronic and chemical effects to carry out their functions, and the machines of the macroscopic world, which utilize the synchronized movements of smaller parts to perform specific tasks. This is a scientific area of great contemporary interest and extraordinary recent growth, yet the notion of molecular-level machines dates back to a time when the ideas surrounding the statistical nature of matter and the laws of thermodynamics were first being formulated. Here we outline the exciting successes in taming molecular-level movement thus far, the underlying principles that all experimental designs must follow, and the early progress made towards utilizing synthetic molecular structures to perform tasks using mechanical motion. We also highlight some of the issues and challenges that still need to be overcome.
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Affiliation(s)
- Euan R Kay
- School of Chemistry, University of Edinburgh, The King's Buildings, West Mains Road, Edinburgh EH9 3JJ, UK
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41
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Ikeda T, Saha S, Aprahamian I, Leung KCF, Williams A, Deng WQ, Flood AH, Goddard WA, Stoddart JF. Toward Electrochemically Controllable Tristable Three-Station [2]Catenanes. Chem Asian J 2007; 2:76-93. [PMID: 17441141 DOI: 10.1002/asia.200600355] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Encouraged by the prospect of producing an electrochemical, color-switchable red-green-blue (RGB) dye compound, we have designed, synthesized, and characterized two three-station [2]catenanes. Both are composed of macrocyclic polyethers containing three pi-electron-rich stations, which act as recognition sites for a pi-electron-deficient tetracationic cyclophane. The molecular structures of the two three-station [2]catenanes were characterized fully by mass spectrometry and 1H NMR spectroscopy. To anticipate the relative occupancies of the three stations in each [2]catenane by the cyclophane, model compounds with the same constitutions in the vicinity of the stations were synthesized. The relative ground-state populations of the three stations occupied in both [2]catenanes were estimated from the thermodynamic parameters for 1:1 complexes between all these model compounds and the cyclophane, obtained from isothermal titration calorimetry (ITC). The electrochemical and electromechanical properties of the three-station [2]catenanes were analyzed by cyclic voltammetry (CV), differential pulse voltammetry (DPV), and spectroelectrochemistry (SEC). The first three-station [2]catenane was found to behave like a bistable system, whereas the second can be described as a quasi-tristable system.
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42
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Eight-membered and larger rings. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/s0959-6380(07)80021-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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43
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Gopee H, Petersen BM, Bond AD, Jeppesen JO. A bromine catalysed dimerisation of α,α′-dihalomonopyrrolo-TTF. Chem Commun (Camb) 2007:4110-2. [DOI: 10.1039/b708191j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Abstract
In this critical review, we discuss switching of the light-powered bistable rotaxanes and catenanes and highlight the practical applications of some of these systems. Photoactive molecular and supramolecular machines are comprised of two parts-1) a switching element, based on noncovalent interactions within the recognition units, which is responsible for executing mechanical movement, and 2) a light-harvesting unit which utilizes light to control the competitive interactions between the recognition sites. We also survey another class of molecular devices, namely molecular rotary motors--i.e., those that behave like their macroscopic counterparts--in which photochemically and thermally induced mechanical movement relies on isomerizations of a pivotal C=C bond, leading to a rotation of the top propeller part with respect to the stationary bottom part of the helical shaped chiral molecule. (146 references.).
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Affiliation(s)
- Sourav Saha
- Department of Chemistry and Biochemistry and California NanoSystems Institute, University of California, Los Angeles, 405 Hilgard Avenue, Los Angeles, CA 90095, USA
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45
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Kay E, Leigh D, Zerbetto F. Synthetische molekulare Motoren und mechanische Maschinen. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200504313] [Citation(s) in RCA: 587] [Impact Index Per Article: 32.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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46
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Saha S, Johansson E, Flood AH, Tseng HR, Zink JI, Stoddart JF. A photoactive molecular triad as a nanoscale power supply for a supramolecular machine. Chemistry 2006; 11:6846-58. [PMID: 16086339 DOI: 10.1002/chem.200500371] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
A tetrathiafulvalene-porphyrin-fullerene (TTF-P-C(60)) molecular triad, which generates electrical current by harnessing light energy when self-assembled onto gold electrodes, has been developed. The triad, composed of three unique electroactive components, namely, 1) an electron-donating TTF unit, 2) a chromophoric porphyrin unit, and 3) an electron-accepting C(60) unit, has been synthesized in a modular fashion. A disulfide-based anchoring group was tagged to the TTF end of the molecule in order to allow its self-assembly on gold surfaces. The surface coverage by the triad in a self-assembled monolayer (SAM) was estimated to be 1.4 nm(2) per molecule, a density which is consistent with hexagonal close-packing of the spherical C(60) component (diameter approximately 1 nm). In a closed electronic circuit, a triad-SAM functionalized working-electrode generates a switchable photocurrent of approximately 1.5 microA cm(-2) when irradiated with a 413 nm Kr-ion laser, a wavelength which is close to the porphyrin chromophore's absorption maximum peak at 420 nm. The electrical energy generated by the triad at the expense of the light energy is ultimately exploited to drive a supramolecular machine in the form of a [2]pseudorotaxane comprised of a pi-electron-deficient tetracationic cyclobis(paraquat-p-phenylene) (CBPQT(4+)) cyclophane and a pi-electron-rich 1,5-bis[(2-hydroxyethoxy) ethoxy]naphthalene (BHEEN) thread. The redox-induced dethreading of the CBPQT(4+) cyclophane from the BHEEN thread can be monitored by measuring the increase in the fluorescence intensity of the BHEEN unit. A gradual increase in the fluorescence intensity of the BHEEN unit concomitant with the photocurrent generation, even at a potential (0 V) much lower than that required (-300 mV) for the direct reduction of the CBPQT(4+) unit, confirms that the dethreading process is driven by the photocurrent generated by the triad-SAM.
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Affiliation(s)
- Sourav Saha
- California NanoSystems Institute, Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095-1569, USA
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47
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Flood AH, Nygaard S, Laursen BW, Jeppesen JO, Stoddart JF. Locking down the Electronic Structure of (Monopyrrolo)tetrathiafulvalene in [2]Rotaxanes. Org Lett 2006; 8:2205-8. [PMID: 16706487 DOI: 10.1021/ol060319+] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[reaction: see text] The redox potentials of a highly constrained [2]rotaxane have been measured and used to model the energy of the HOMO of tetrathiafulvalene-based bistable [2]rotaxanes in their two co-conformationally isomeric states. Restrained from co-conformational movements, the measured oxidation and reduction potentials provide insights into the orbital energies and electronic structure of a (monopyrrolo)tetrathiafulvalene unit when encircled by a tetracationic cyclobis(paraquat-p-phenylene) ring.
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Affiliation(s)
- Amar H Flood
- California NanoSystems Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, 90095-1569, USA.
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48
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Chiang PT, Cheng PN, Lin CF, Liu YH, Lai CC, Peng SM, Chiu SH. A Macrocycle/Molecular-Clip Complex that Functions as a Quadruply Controllable Molecular Switch. Chemistry 2006; 12:865-76. [PMID: 16206299 DOI: 10.1002/chem.200500676] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Herein, we report the synthesis of a molecular clip with TTF side-walls and its binding behavior towards electron-deficient guests, namely the formation of macrocycle/molecular-clip supramolecular complexes in solution. Four different sets of external stimuli--the K(+)/[2.2.2]cryptand, NH(4) (+)/Et(3)N and (p-BrPh)(3)NSbCl(6)/Zn pairs, and heating/cooling cycles-control the movement of this molecular switch between its threaded and unthreaded states and provide color changes that are observable by the naked eye. This macrocycle/molecular-clip complex system can be considered not only as a quadruple-use molecular switch, but can also be operated by three of these stimuli as a three-input molecular NOR-functioning logic gate that may be monitored by UV-visible spectroscopy.
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49
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Nygaard S, Laursen BW, Flood AH, Hansen CN, Jeppesen JO, Stoddart JF. Quantifying the working stroke of tetrathiafulvalene-based electrochemically-driven linear motor-molecules. Chem Commun (Camb) 2006:144-6. [PMID: 16372086 DOI: 10.1039/b511575b] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A highly constrained [2]rotaxane, constructed in such a way that the tetracationic cyclobis(paraquat-p-phenylene) ring is restricted to reside on a monopyrrolotetrathiafulvalene unit, has been synthesised and characterised. This design allows the deslipping free energy barrier for the tetracationic ring in all three redox states of the rotaxane to be determined.
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Affiliation(s)
- Sune Nygaard
- Department of Chemistry, University of Southern Denmark, Odense University, Campusvej 55, DK-5230, Odense M, Denmark
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Beckman R, Beverly K, Boukai A, Bunimovich Y, Choi JW, DeIonno E, Green J, Johnston-Halperin E, Luo Y, Sheriff B, Stoddart F, Heath JR. Spiers Memorial Lecture : Molecular mechanics and molecular electronics. Faraday Discuss 2006; 131:9-22; discussion 91-109. [PMID: 16512361 DOI: 10.1039/b513148k] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We describe our research into building integrated molecular electronics circuitry for a diverse set of functions, and with a focus on the fundamental scientific issues that surround this project. In particular, we discuss experiments aimed at understanding the function of bistable rotaxane molecular electronic switches by correlating the switching kinetics and ground state thermodynamic properties of those switches in various environments, ranging from the solution phase to a Langmuir monolayer of the switching molecules sandwiched between two electrodes. We discuss various devices, low bit-density memory circuits, and ultra-high density memory circuits that utilize the electrochemical switching characteristics of these molecules in conjunction with novel patterning methods. We also discuss interconnect schemes that are capable of bridging the micrometre to submicrometre length scales of conventional patterning approaches to the near-molecular length scales of the ultra-dense memory circuits. Finally, we discuss some of the challenges associated with fabricated ultra-dense molecular electronic integrated circuits.
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Affiliation(s)
- Robert Beckman
- Caltech Chemistry, MC 127-72, 1200 East California Boulevard, Pasadena, CA 91125, USA
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