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Kapanaiah SKT, Rosenbrock H, Hengerer B, Kätzel D. Neural effects of dopaminergic compounds revealed by multi-site electrophysiology and interpretable machine-learning. Front Pharmacol 2024; 15:1412725. [PMID: 39045050 PMCID: PMC11263031 DOI: 10.3389/fphar.2024.1412725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Accepted: 06/10/2024] [Indexed: 07/25/2024] Open
Abstract
Background Neuropsychopharmacological compounds may exert complex brain-wide effects due to an anatomically and genetically broad expression of their molecular targets and indirect effects via interconnected brain circuits. Electrophysiological measurements in multiple brain regions using electroencephalography (EEG) or local field potential (LFP) depth-electrodes may record fingerprints of such pharmacologically-induced changes in local activity and interregional connectivity (pEEG/pLFP). However, in order to reveal such patterns comprehensively and potentially derive mechanisms of therapeutic pharmacological effects, both activity and connectivity have to be estimated for many brain regions. This entails the problem that hundreds of electrophysiological parameters are derived from a typically small number of subjects, making frequentist statistics ill-suited for their analysis. Methods We here present an optimized interpretable machine-learning (ML) approach which relies on predictive power in individual recording sequences to extract and quantify the robustness of compound-induced neural changes from multi-site recordings using Shapley additive explanations (SHAP) values. To evaluate this approach, we recorded LFPs in mediodorsal thalamus (MD), prefrontal cortex (PFC), dorsal hippocampus (CA1 and CA3), and ventral hippocampus (vHC) of mice after application of amphetamine or of the dopaminergic antagonists clozapine, raclopride, or SCH23390, for which effects on directed neural communication between those brain structures were so far unknown. Results Our approach identified complex patterns of neurophysiological changes induced by each of these compounds, which were reproducible across time intervals, doses (where tested), and ML algorithms. We found, for example, that the action of clozapine in the analysed cortico-thalamo-hippocampal network entails a larger share of D1-as opposed to D2-receptor induced effects, and that the D2-antagonist raclopride reconfigures connectivity in the delta-frequency band. Furthermore, the effects of amphetamine and clozapine were surprisingly similar in terms of decreasing thalamic input to PFC and vHC, and vHC activity, whereas an increase of dorsal-hippocampal communication and of thalamic activity distinguished amphetamine from all tested anti-dopaminergic drugs. Conclusion Our study suggests that communication from the dorsal hippocampus scales proportionally with dopamine receptor activation and demonstrates, more generally, the high complexity of neuropharmacological effects on the circuit level. We envision that the presented approach can aid in the standardization and improved data extraction in pEEG/pLFP-studies.
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Affiliation(s)
| | - Holger Rosenbrock
- Boehringer Ingelheim Pharma GmbH & Co. KG, Div. Research Germany, Ingelheim, Germany
| | - Bastian Hengerer
- Boehringer Ingelheim Pharma GmbH & Co. KG, Div. Research Germany, Ingelheim, Germany
| | - Dennis Kätzel
- Institute of Applied Physiology, Ulm University, Ulm, Germany
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Rodriguez-Sabate C, Gonzalez A, Perez-Darias JC, Morales I, Sole-Sabater M, Rodriguez M. Causality methods to study the functional connectivity in brain networks: the basal ganglia - thalamus causal interactions. Brain Imaging Behav 2024; 18:1-18. [PMID: 37823962 PMCID: PMC10844145 DOI: 10.1007/s11682-023-00803-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/10/2023] [Indexed: 10/13/2023]
Abstract
This study uses methods recently developed to study the complex evolution of atmospheric phenomena which have some similarities with the dynamics of the human brain. In both cases, it is possible to record the activity of particular centers (geographic regions or brain nuclei) but not to make an experimental modification of their state. The study of "causality", which is necessary to understand the dynamics of these complex systems and to develop robust models that can predict their evolution, is hampered by the experimental restrictions imposed by the nature of both systems. The study was performed with data obtained in the thalamus and basal ganglia of awake humans executing different tasks. This work studies the linear, non-linear and more complex relationships of these thalamic centers with the cortex and main BG nuclei, using three complementary techniques: the partial correlation regression method, the Gaussian process regression/distance correlation and a model-free method based on nearest-neighbor that computes the conditional mutual information. These causality methods indicated that the basal ganglia present a different functional relationship with the anterior-ventral (motor), intralaminar and medio-dorsal thalamic centers, and that more than 60% of these thalamus-basal ganglia relationships present a non-linear dynamic (35 of the 57 relationships found). These functional interactions were observed for basal ganglia nuclei with direct structural connections with the thalamus (primary somatosensory and motor cortex, striatum, internal globus pallidum and substantia nigra pars reticulata), but also for basal ganglia without structural connections with the thalamus (external globus pallidum and subthalamic nucleus). The motor tasks induced rapid modifications of the thalamus-basal ganglia interactions. These findings provide new perspectives of the thalamus - BG interactions, many of which may be supported by indirect functional relationships and not by direct excitatory/inhibitory interactions.
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Affiliation(s)
- Clara Rodriguez-Sabate
- Laboratory of Neurobiology and Experimental Neurology, Department of Physiology, Faculty of Medicine, University of La Laguna, Tenerife, Canary Islands, Spain
- Center for Networked Biomedical Research in Neurodegenerative Diseases (CIBERNED), Madrid, Spain
| | - Albano Gonzalez
- Department of Physics, University of La Laguna, Tenerife, Canary Islands, Spain
| | | | - Ingrid Morales
- Laboratory of Neurobiology and Experimental Neurology, Department of Physiology, Faculty of Medicine, University of La Laguna, Tenerife, Canary Islands, Spain
- Center for Networked Biomedical Research in Neurodegenerative Diseases (CIBERNED), Madrid, Spain
| | - Miguel Sole-Sabater
- Department of Neurology, La Candelaria University Hospital, Tenerife, Canary Islands, Spain
| | - Manuel Rodriguez
- Laboratory of Neurobiology and Experimental Neurology, Department of Physiology, Faculty of Medicine, University of La Laguna, Tenerife, Canary Islands, Spain.
- Center for Networked Biomedical Research in Neurodegenerative Diseases (CIBERNED), Madrid, Spain.
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Moon J, Chau T. Online Ternary Classification of Covert Speech by Leveraging the Passive Perception of Speech. Int J Neural Syst 2023; 33:2350048. [PMID: 37522623 DOI: 10.1142/s012906572350048x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/01/2023]
Abstract
Brain-computer interfaces (BCIs) provide communicative alternatives to those without functional speech. Covert speech (CS)-based BCIs enable communication simply by thinking of words and thus have intuitive appeal. However, an elusive barrier to their clinical translation is the collection of voluminous examples of high-quality CS signals, as iteratively rehearsing words for long durations is mentally fatiguing. Research on CS and speech perception (SP) identifies common spatiotemporal patterns in their respective electroencephalographic (EEG) signals, pointing towards shared encoding mechanisms. The goal of this study was to investigate whether a model that leverages the signal similarities between SP and CS can differentiate speech-related EEG signals online. Ten participants completed a dyadic protocol where in each trial, they listened to a randomly selected word and then subsequently mentally rehearsed the word. In the offline sessions, eight words were presented to participants. For the subsequent online sessions, the two most distinct words (most separable in terms of their EEG signals) were chosen to form a ternary classification problem (two words and rest). The model comprised a functional mapping derived from SP and CS signals of the same speech token (features are extracted via a Riemannian approach). An average ternary online accuracy of 75.3% (60% chance level) was achieved across participants, with individual accuracies as high as 93%. Moreover, we observed that the signal-to-noise ratio (SNR) of CS signals was enhanced by perception-covert modeling according to the level of high-frequency ([Formula: see text]-band) correspondence between CS and SP. These findings may lead to less burdensome data collection for training speech BCIs, which could eventually enhance the rate at which the vocabulary can grow.
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Affiliation(s)
- Jae Moon
- Institute of Biomedical Engineering, University of Toronto, Holland Bloorview Kid's Rehabilitation Hospital, Toronto, Ontario, Canada
| | - Tom Chau
- Institute of Biomedical Engineering, University of Toronto, Holland Bloorview Kid's Rehabilitation Hospital, Toronto, Ontario, Canada
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Huang J, Zhang G, Dang J, Chen Y, Miyamoto S. Semantic processing during continuous speech production: an analysis from eye movements and EEG. Front Hum Neurosci 2023; 17:1253211. [PMID: 37727862 PMCID: PMC10505728 DOI: 10.3389/fnhum.2023.1253211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Accepted: 08/22/2023] [Indexed: 09/21/2023] Open
Abstract
Introduction Speech production involves neurological planning and articulatory execution. How speakers prepare for articulation is a significant aspect of speech production research. Previous studies have focused on isolated words or short phrases to explore speech planning mechanisms linked to articulatory behaviors, including investigating the eye-voice span (EVS) during text reading. However, these experimental paradigms lack real-world speech process replication. Additionally, our understanding of the neurological dimension of speech planning remains limited. Methods This study examines speech planning mechanisms during continuous speech production by analyzing behavioral (eye movement and speech) and neurophysiological (EEG) data within a continuous speech production task. The study specifically investigates the influence of semantic consistency on speech planning and the occurrence of "look ahead" behavior. Results The outcomes reveal the pivotal role of semantic coherence in facilitating fluent speech production. Speakers access lexical representations and phonological information before initiating speech, emphasizing the significance of semantic processing in speech planning. Behaviorally, the EVS decreases progressively during continuous reading of regular sentences, with a slight increase for non-regular sentences. Moreover, eye movement pattern analysis identifies two distinct speech production modes, highlighting the importance of semantic comprehension and prediction in higher-level lexical processing. Neurologically, the dual pathway model of speech production is supported, indicating a dorsal information flow and frontal lobe involvement. The brain network linked to semantic understanding exhibits a negative correlation with semantic coherence, with significant activation during semantic incoherence and suppression in regular sentences. Discussion The study's findings enhance comprehension of speech planning mechanisms and offer insights into the role of semantic coherence in continuous speech production. Furthermore, the research methodology establishes a valuable framework for future investigations in this domain.
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Affiliation(s)
- Jinfeng Huang
- Faculty of Human Sciences, University of Tsukuba, Ibaraki, Japan
- Research Institute, NeuralEcho Technology Co., Ltd., Beijing, China
| | - Gaoyan Zhang
- Tianjin Key Laboratory of Cognitive Computing and Application, College of Intelligence and Computing, Tianjin University, Tianjin, China
| | - Jianwu Dang
- Tianjin Key Laboratory of Cognitive Computing and Application, College of Intelligence and Computing, Tianjin University, Tianjin, China
| | - Yu Chen
- Technical College for the Deaf, Tianjin University of Technology, Tianjin, China
| | - Shoko Miyamoto
- Faculty of Human Sciences, University of Tsukuba, Ibaraki, Japan
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Usami K, Matsumoto R, Korzeniewska A, Shimotake A, Matsuhashi M, Nakae T, Kikuchi T, Yoshida K, Kunieda T, Takahashi R, Crone NE, Ikeda A. The dynamics of cortical interactions in visual recognition of object category: living versus nonliving. Cereb Cortex 2023; 33:5740-5750. [PMID: 36408645 PMCID: PMC10152084 DOI: 10.1093/cercor/bhac456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 10/23/2022] [Accepted: 10/24/2022] [Indexed: 11/22/2022] Open
Abstract
Noninvasive brain imaging studies have shown that higher visual processing of objects occurs in neural populations that are separable along broad semantic categories, particularly living versus nonliving objects. However, because of their limited temporal resolution, these studies have not been able to determine whether broad semantic categories are also reflected in the dynamics of neural interactions within cortical networks. We investigated the time course of neural propagation among cortical areas activated during object naming in 12 patients implanted with subdural electrode grids prior to epilepsy surgery, with a special focus on the visual recognition phase of the task. Analysis of event-related causality revealed significantly stronger neural propagation among sites within ventral temporal lobe (VTL) at early latencies, around 250 ms, for living objects compared to nonliving objects. Differences in other features, including familiarity, visual complexity, and age of acquisition, did not significantly change the patterns of neural propagation. Our findings suggest that the visual processing of living objects relies on stronger causal interactions among sites within VTL, perhaps reflecting greater integration of visual feature processing. In turn, this may help explain the fragility of naming living objects in neurological diseases affecting VTL.
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Affiliation(s)
- Kiyohide Usami
- Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
| | - Riki Matsumoto
- Division of Neurology, Kobe University Graduate School of Medicine, Kobe 650-0017, Japan
| | - Anna Korzeniewska
- Department of Neurology, Johns Hopkins University School of Medicine, MD 21287, United States
| | - Akihiro Shimotake
- Department of Neurology, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
| | - Masao Matsuhashi
- Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
| | - Takuro Nakae
- Department of Neurosurgery, Shiga General Hospital, Moriyama 524-8524, Japan
| | - Takayuki Kikuchi
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
| | - Kazumichi Yoshida
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
| | - Takeharu Kunieda
- Department of Neurosurgery, Ehime University Graduate School of Medicine, Toon 791-0295, Japan
| | - Ryosuke Takahashi
- Department of Neurology, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University School of Medicine, MD 21287, United States
| | - Akio Ikeda
- Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan
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Spontaneity matters! Network alterations before and after spontaneous and active facial self-touches: An EEG functional connectivity study. Int J Psychophysiol 2023; 184:28-38. [PMID: 36563880 DOI: 10.1016/j.ijpsycho.2022.12.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 12/07/2022] [Accepted: 12/09/2022] [Indexed: 12/24/2022]
Abstract
BACKGROUND Despite humans frequently performing spontaneous facial self-touches (sFST), the function of this behavior remains speculative. sFST have been discussed in the context of self-regulation, emotional homeostasis, working memory processes, and attention focus. First evidence indicates that sFST and active facial self-touches (aFST) are neurobiologically different phenomena. The aim of the present analysis was to examine EEG-based connectivity in the course of sFST and aFST to test the hypotheses that sFST affect brain network interactions relevant for other than sensorimotor processes. METHODS To trigger spontaneous FST a previously successful setting was used: 60 healthy participants manually explored two haptic stimuli and held the shapes of the stimuli in memory for a 14 min retention interval. Afterwards the shapes were drawn on a sheet of paper. During the retention interval, artifact-free EEG-data of 97 sFST by 32 participants were recorded. At the end of the experiment, the participants performed aFST with both hands successively. For the EEG-data, connectivity was computed and compared between the phases before and after sFST and aFST and between the respective before-and the after-phases. RESULTS For the before-after comparison, brainwide distributed significant connectivity differences (p < .00079) were observed for sFST, but not for aFST. Additionally, comparing the before- and after-phases of sFST and aFST, respectively, revealed increased similarity between the after-phases than between the before-phases. CONCLUSION The results support the assumption that sFST and aFST are neurobiologically different phenomena. Furthermore, the aligned network properties of the after-phases compared to the before-phases indicate that sFST serve self-regulatory functions that aFST do not serve.
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Weiss AR, Korzeniewska A, Chrabaszcz A, Bush A, Fiez JA, Crone NE, Richardson RM. Lexicality-Modulated Influence of Auditory Cortex on Subthalamic Nucleus During Motor Planning for Speech. NEUROBIOLOGY OF LANGUAGE (CAMBRIDGE, MASS.) 2023; 4:53-80. [PMID: 37229140 PMCID: PMC10205077 DOI: 10.1162/nol_a_00086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 10/18/2022] [Indexed: 05/27/2023]
Abstract
Speech requires successful information transfer within cortical-basal ganglia loop circuits to produce the desired acoustic output. For this reason, up to 90% of Parkinson's disease patients experience impairments of speech articulation. Deep brain stimulation (DBS) is highly effective in controlling the symptoms of Parkinson's disease, sometimes alongside speech improvement, but subthalamic nucleus (STN) DBS can also lead to decreases in semantic and phonological fluency. This paradox demands better understanding of the interactions between the cortical speech network and the STN, which can be investigated with intracranial EEG recordings collected during DBS implantation surgery. We analyzed the propagation of high-gamma activity between STN, superior temporal gyrus (STG), and ventral sensorimotor cortices during reading aloud via event-related causality, a method that estimates strengths and directionalities of neural activity propagation. We employed a newly developed bivariate smoothing model based on a two-dimensional moving average, which is optimal for reducing random noise while retaining a sharp step response, to ensure precise embedding of statistical significance in the time-frequency space. Sustained and reciprocal neural interactions between STN and ventral sensorimotor cortex were observed. Moreover, high-gamma activity propagated from the STG to the STN prior to speech onset. The strength of this influence was affected by the lexical status of the utterance, with increased activity propagation during word versus pseudoword reading. These unique data suggest a potential role for the STN in the feedforward control of speech.
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Affiliation(s)
- Alexander R. Weiss
- JHU Cognitive Neurophysiology and BMI Lab, Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Anna Korzeniewska
- JHU Cognitive Neurophysiology and BMI Lab, Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Anna Chrabaszcz
- Department of Psychology, University of Pittsburgh, Pittsburgh, PA, USA
| | - Alan Bush
- Brain Modulation Lab, Department of Neurosurgery, Massachusetts General Hospital, Boston, MA, USA
- Harvard Medical School, Boston, MA, USA
| | - Julie A. Fiez
- Department of Psychology, University of Pittsburgh, Pittsburgh, PA, USA
- Department of Communication Science and Disorders, University of Pittsburgh, Pittsburgh, PA, USA
- University of Pittsburgh Brain Institute, Pittsburgh, PA, USA
| | - Nathan E. Crone
- JHU Cognitive Neurophysiology and BMI Lab, Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Robert M. Richardson
- Brain Modulation Lab, Department of Neurosurgery, Massachusetts General Hospital, Boston, MA, USA
- Harvard Medical School, Boston, MA, USA
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Chen WG, Iversen JR, Kao MH, Loui P, Patel AD, Zatorre RJ, Edwards E. Music and Brain Circuitry: Strategies for Strengthening Evidence-Based Research for Music-Based Interventions. J Neurosci 2022; 42:8498-8507. [PMID: 36351825 PMCID: PMC9665917 DOI: 10.1523/jneurosci.1135-22.2022] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 09/07/2022] [Accepted: 09/10/2022] [Indexed: 11/17/2022] Open
Abstract
The neuroscience of music and music-based interventions (MBIs) is a fascinating but challenging research field. While music is a ubiquitous component of every human society, MBIs may encompass listening to music, performing music, music-based movement, undergoing music education and training, or receiving treatment from music therapists. Unraveling the brain circuits activated and influenced by MBIs may help us gain better understanding of the therapeutic and educational values of MBIs by gathering strong research evidence. However, the complexity and variety of MBIs impose unique research challenges. This article reviews the recent endeavor led by the National Institutes of Health to support evidence-based research of MBIs and their impact on health and diseases. It also highlights fundamental challenges and strategies of MBI research with emphases on the utilization of animal models, human brain imaging and stimulation technologies, behavior and motion capturing tools, and computational approaches. It concludes with suggestions of basic requirements when studying MBIs and promising future directions to further strengthen evidence-based research on MBIs in connections with brain circuitry.SIGNIFICANCE STATEMENT Music and music-based interventions (MBI) engage a wide range of brain circuits and hold promising therapeutic potentials for a variety of health conditions. Comparative studies using animal models have helped in uncovering brain circuit activities involved in rhythm perception, while human imaging, brain stimulation, and motion capture technologies have enabled neural circuit analysis underlying the effects of MBIs on motor, affective/reward, and cognitive function. Combining computational analysis, such as prediction method, with mechanistic studies in animal models and humans may unravel the complexity of MBIs and their effects on health and disease.
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Affiliation(s)
- Wen Grace Chen
- Division of Extramural Research, National Center for Complementary and Integrative Health, National Institutes of Health, Bethesda, Maryland, 20892
| | | | - Mimi H Kao
- Tufts University, Medford, Massachusetts 02155
| | - Psyche Loui
- Northeastern University, Boston, Massachusetts 02115
| | | | - Robert J Zatorre
- Montreal Neurological Institute, McGill University, Montreal, Quebec H3A2B4, Canada
| | - Emmeline Edwards
- Division of Extramural Research, National Center for Complementary and Integrative Health, National Institutes of Health, Bethesda, Maryland, 20892
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Stone SSD, Park EH, Bolton J, Harini C, Libenson MH, Rotenberg A, Takeoka M, Tsuboyama M, Pearl PL, Madsen JR. Interictal Connectivity Revealed by Granger Analysis of Stereoelectroencephalography: Association With Ictal Onset Zone, Resection, and Outcome. Neurosurgery 2022; 91:583-589. [PMID: 36084171 PMCID: PMC10553068 DOI: 10.1227/neu.0000000000002079] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 05/14/2022] [Indexed: 02/04/2023] Open
Abstract
BACKGROUND Stereoelectroencephalography (sEEG) facilitates electrical sampling and evaluation of complex deep-seated, dispersed, and multifocal locations. Granger causality (GC), previously used to study seizure networks using interictal data from subdural grids, may help identify the seizure-onset zone from interictal sEEG recordings. OBJECTIVE To examine whether statistical analysis of interictal sEEG helps identify surgical target sites and whether surgical resection of highly ranked nodes correspond to favorable outcomes. METHODS Ten minutes of extraoperative recordings from sequential patients who underwent sEEG evaluation were analyzed (n = 20). GC maps were compared with clinically defined surgical targets using rank order statistics. Outcomes of patients with focal resection/ablation with median follow-up of 3.6 years were classified as favorable (Engel 1, 2) or poor (Engel 3, 4) to assess their relationship with the removal of highly ranked nodes using the Wilcoxon rank-sum test. RESULTS In 12 of 20 cases, the rankings of contacts (based on the sum of outward connection weights) mapped to the seizure-onset zone showed higher causal node connectivity than predicted by chance ( P ≤ .02). A very low aggregate probability ( P < 10 -18 , n = 20) suggests that causal node connectivity predicts seizure networks. In 8 of 16 with outcome data, causal connectivity in the resection was significantly greater than in the remaining contacts ( P ≤ .05). We found a significant association between favorable outcome and the presence of highly ranked nodes in the resection ( P < .05). CONCLUSION Granger analysis can identify seizure foci from interictal sEEG and correlates highly ranked nodes with favorable outcome, potentially informing surgical decision-making without reliance on ictal recordings.
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Affiliation(s)
- Scellig S. D. Stone
- Epilepsy Surgery Program, Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Eun-Hyoung Park
- Epilepsy Surgery Program, Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Jeffrey Bolton
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Chellamani Harini
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Mark H. Libenson
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Alexander Rotenberg
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Masanori Takeoka
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Melissa Tsuboyama
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Phillip L. Pearl
- Epilepsy Division, Department of Neurology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Joseph R. Madsen
- Epilepsy Surgery Program, Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
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Mercier MR, Dubarry AS, Tadel F, Avanzini P, Axmacher N, Cellier D, Vecchio MD, Hamilton LS, Hermes D, Kahana MJ, Knight RT, Llorens A, Megevand P, Melloni L, Miller KJ, Piai V, Puce A, Ramsey NF, Schwiedrzik CM, Smith SE, Stolk A, Swann NC, Vansteensel MJ, Voytek B, Wang L, Lachaux JP, Oostenveld R. Advances in human intracranial electroencephalography research, guidelines and good practices. Neuroimage 2022; 260:119438. [PMID: 35792291 DOI: 10.1016/j.neuroimage.2022.119438] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 05/23/2022] [Accepted: 06/30/2022] [Indexed: 12/11/2022] Open
Abstract
Since the second-half of the twentieth century, intracranial electroencephalography (iEEG), including both electrocorticography (ECoG) and stereo-electroencephalography (sEEG), has provided an intimate view into the human brain. At the interface between fundamental research and the clinic, iEEG provides both high temporal resolution and high spatial specificity but comes with constraints, such as the individual's tailored sparsity of electrode sampling. Over the years, researchers in neuroscience developed their practices to make the most of the iEEG approach. Here we offer a critical review of iEEG research practices in a didactic framework for newcomers, as well addressing issues encountered by proficient researchers. The scope is threefold: (i) review common practices in iEEG research, (ii) suggest potential guidelines for working with iEEG data and answer frequently asked questions based on the most widespread practices, and (iii) based on current neurophysiological knowledge and methodologies, pave the way to good practice standards in iEEG research. The organization of this paper follows the steps of iEEG data processing. The first section contextualizes iEEG data collection. The second section focuses on localization of intracranial electrodes. The third section highlights the main pre-processing steps. The fourth section presents iEEG signal analysis methods. The fifth section discusses statistical approaches. The sixth section draws some unique perspectives on iEEG research. Finally, to ensure a consistent nomenclature throughout the manuscript and to align with other guidelines, e.g., Brain Imaging Data Structure (BIDS) and the OHBM Committee on Best Practices in Data Analysis and Sharing (COBIDAS), we provide a glossary to disambiguate terms related to iEEG research.
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Significance of event related causality (ERC) in eloquent neural networks. Neural Netw 2022; 149:204-216. [PMID: 35248810 PMCID: PMC9029701 DOI: 10.1016/j.neunet.2022.02.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Revised: 01/28/2022] [Accepted: 02/03/2022] [Indexed: 11/20/2022]
Abstract
Neural activity emerges and propagates swiftly between brain areas. Investigation of these transient large-scale flows requires sophisticated statistical models. We present a method for assessing the statistical confidence of event-related neural propagation. Furthermore, we propose a criterion for statistical model selection, based on both goodness of fit and width of confidence intervals. We show that event-related causality (ERC) with two-dimensional (2D) moving average, is an efficient estimator of task-related neural propagation and that it can be used to determine how different cognitive task demands affect the strength and directionality of neural propagation across human cortical networks. Using electrodes surgically implanted on the surface of the brain for clinical testing prior to epilepsy surgery, we recorded electrocorticographic (ECoG) signals as subjects performed three naming tasks: naming of ambiguous and unambiguous visual objects, and as a contrast, naming to auditory description. ERC revealed robust and statistically significant patterns of high gamma activity propagation, consistent with models of visually and auditorily cued word production. Interestingly, ambiguous visual stimuli elicited more robust propagation from visual to auditory cortices relative to unambiguous stimuli, whereas naming to auditory description elicited propagation in the opposite direction, consistent with recruitment of modalities other than those of the stimulus during object recognition and naming. The new method introduced here is uniquely suitable to both research and clinical applications and can be used to estimate the statistical significance of neural propagation for both cognitive neuroscientific studies and functional brain mapping prior to resective surgery for epilepsy and brain tumors.
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12
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Cheng THZ, Creel SC, Iversen JR. How Do You Feel the Rhythm: Dynamic Motor-Auditory Interactions Are Involved in the Imagination of Hierarchical Timing. J Neurosci 2022; 42:500-512. [PMID: 34848500 PMCID: PMC8802922 DOI: 10.1523/jneurosci.1121-21.2021] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Revised: 11/10/2021] [Accepted: 11/12/2021] [Indexed: 11/21/2022] Open
Abstract
Predicting and organizing patterns of events is important for humans to survive in a dynamically changing world. The motor system has been proposed to be actively, and necessarily, engaged in not only the production but the perception of rhythm by organizing hierarchical timing that influences auditory responses. It is not yet well understood how the motor system interacts with the auditory system to perceive and maintain hierarchical structure in time. This study investigated the dynamic interaction between auditory and motor functional sources during the perception and imagination of musical meters. We pursued this using a novel method combining high-density EEG, EMG, and motion capture with independent component analysis to separate motor and auditory activity during meter imagery while robustly controlling against covert movement. We demonstrated that endogenous brain activity in both auditory and motor functional sources reflects the imagination of binary and ternary meters in the absence of corresponding acoustic cues or overt movement at the meter rate. We found clear evidence for hypothesized motor-to-auditory information flow at the beat rate in all conditions, suggesting a role for top-down influence of the motor system on auditory processing of beat-based rhythms, and reflecting an auditory-motor system with tight reciprocal informational coupling. These findings align with and further extend a set of motor hypotheses from beat perception to hierarchical meter imagination, adding supporting evidence to active engagement of the motor system in auditory processing, which may more broadly speak to the neural mechanisms of temporal processing in other human cognitive functions.SIGNIFICANCE STATEMENT Humans live in a world full of hierarchically structured temporal information, the accurate perception of which is essential for understanding speech and music. Music provides a window into the brain mechanisms of time perception, enabling us to examine how the brain groups musical beats into, for example a march or waltz. Using a novel paradigm combining measurement of electrical brain activity with data-driven analysis, this study directly investigates motor-auditory connectivity during meter imagination. Findings highlight the importance of the motor system in the active imagination of meter. This study sheds new light on a fundamental form of perception by demonstrating how auditory-motor interaction may support hierarchical timing processing, which may have clinical implications for speech and motor rehabilitation.
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Affiliation(s)
- Tzu-Han Zoe Cheng
- Department of Cognitive Science, University of California-San Diego, La Jolla, California 92093
- Institute for Neural Computation and Swartz Center for Computational Neuroscience, University of California-San Diego, La Jolla, California 92093
| | - Sarah C Creel
- Department of Cognitive Science, University of California-San Diego, La Jolla, California 92093
| | - John R Iversen
- Institute for Neural Computation and Swartz Center for Computational Neuroscience, University of California-San Diego, La Jolla, California 92093
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13
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Cometa A, D'Orio P, Revay M, Micera S, Artoni F. Stimulus evoked causality estimation in stereo-EEG. J Neural Eng 2021; 18. [PMID: 34534968 DOI: 10.1088/1741-2552/ac27fb] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 09/17/2021] [Indexed: 11/11/2022]
Abstract
Objective.Stereo-electroencephalography (SEEG) has recently gained importance in analyzing brain functions. Its high temporal resolution and spatial specificity make it a powerful tool to investigate the strength, direction, and spectral content of brain networks interactions, especially when these connections are stimulus-evoked. However, choosing the best approach to evaluate the flow of information is not trivial, due to the lack of validated methods explicitly designed for SEEG.Approach.We propose a novel non-parametric statistical test for event-related causality (ERC) assessment on SEEG recordings. Here, we refer to the ERC as the causality evoked by a particular part of the stimulus (a response window (RW)). We also present a data surrogation method to evaluate the performance of a causality estimation algorithm. We finally validated our pipeline using surrogate SEEG data derived from an experimentally collected dataset, and compared the most used and successful measures to estimate effective connectivity, belonging to the Geweke-Granger causality framework.Main results.Here we show that our workflow correctly identified all the directed connections in the RW of the surrogate data and prove the robustness of the procedure against synthetic noise with amplitude exceeding physiological-plausible values. Among the causality measures tested, partial directed coherence performed best.Significance.This is the first non-parametric statistical test for ERC estimation explicitly designed for SEEG datasets. The pipeline, in principle, can also be applied to the analysis of any type of time-varying estimator, if there exists a clearly defined RW.
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Affiliation(s)
- Andrea Cometa
- BioRobotics Institute and Department of Excellence in Robotics and AI, Scuola Superiore Sant'Anna, Viale Rinaldo Piaggio, 34, Pontedera, 56025, Italy
| | - Piergiorgio D'Orio
- 'Claudio Munari' Center for Epilepsy Surgery, ASST GOM Niguarda Hospital, Piazza dell'Ospedale Maggiore, 3, 20162 Milano, Italy.,Institute of Neuroscience, CNR, via Volturno 39E, Parma 43125, Italy
| | - Martina Revay
- 'Claudio Munari' Center for Epilepsy Surgery, ASST GOM Niguarda Hospital, Piazza dell'Ospedale Maggiore, 3, 20162 Milano, Italy.,Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Via Giovanni Battista Grassi 74, Milan 20157, Italy
| | - Silvestro Micera
- BioRobotics Institute and Department of Excellence in Robotics and AI, Scuola Superiore Sant'Anna, Viale Rinaldo Piaggio, 34, Pontedera, 56025, Italy.,Ecole Polytechnique Federale de Lausanne, Bertarelli Foundation Chair in Translational NeuroEngineering, Center for Neuroprosthetics and School of Engineering, Chemin des Mines, 9, Geneva, GE CH 1202, Switzerland
| | - Fiorenzo Artoni
- BioRobotics Institute and Department of Excellence in Robotics and AI, Scuola Superiore Sant'Anna, Viale Rinaldo Piaggio, 34, Pontedera, 56025, Italy.,Ecole Polytechnique Federale de Lausanne, Bertarelli Foundation Chair in Translational NeuroEngineering, Center for Neuroprosthetics and School of Engineering, Chemin des Mines, 9, Geneva, GE CH 1202, Switzerland
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14
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Li H, Wang Y, Yan G, Sun Y, Tanabe S, Liu CC, Quigg MS, Zhang T. A Bayesian State-Space Approach to Mapping Directional Brain Networks. J Am Stat Assoc 2021. [DOI: 10.1080/01621459.2020.1865985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Huazhang Li
- Department of Statistics, University of Virginia, Charlottesville, VA
| | - Yaotian Wang
- Department of Statistics, University of Pittsburgh, Pittsburgh, PA
| | - Guofen Yan
- Department of Public Health Sciences, University of Virginia, Charlottesville, VA
| | - Yinge Sun
- Department of Statistics, University of Virginia, Charlottesville, VA
| | - Seiji Tanabe
- Department of Psychology, University of Virginia, Charlottesville, VA
| | - Chang-Chia Liu
- Department of Neurosurgery, University of Virginia, Charlottesville, VA
| | - Mark S. Quigg
- Department of Neurology, University of Virginia, Charlottesville, VA
| | - Tingting Zhang
- Department of Statistics, University of Pittsburgh, Pittsburgh, PA
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15
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Alhourani A, Korzeniewska A, Wozny TA, Lipski WJ, Kondylis ED, Ghuman AS, Crone NE, Crammond DJ, Turner RS, Richardson RM. Subthalamic Nucleus Activity Influences Sensory and Motor Cortex during Force Transduction. Cereb Cortex 2021; 30:2615-2626. [PMID: 31989165 DOI: 10.1093/cercor/bhz264] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 08/23/2019] [Accepted: 09/17/2019] [Indexed: 12/12/2022] Open
Abstract
The subthalamic nucleus (STN) is proposed to participate in pausing, or alternately, in dynamic scaling of behavioral responses, roles that have conflicting implications for understanding STN function in the context of deep brain stimulation (DBS) therapy. To examine the nature of event-related STN activity and subthalamic-cortical dynamics, we performed primary motor and somatosensory electrocorticography while subjects (n = 10) performed a grip force task during DBS implantation surgery. Phase-locking analyses demonstrated periods of STN-cortical coherence that bracketed force transduction, in both beta and gamma ranges. Event-related causality measures demonstrated that both STN beta and gamma activity predicted motor cortical beta and gamma activity not only during force generation but also prior to movement onset. These findings are consistent with the idea that the STN participates in motor planning, in addition to the modulation of ongoing movement. We also demonstrated bidirectional information flow between the STN and somatosensory cortex in both beta and gamma range frequencies, suggesting robust STN participation in somatosensory integration. In fact, interactions in beta activity between the STN and somatosensory cortex, and not between STN and motor cortex, predicted PD symptom severity. Thus, the STN contributes to multiple aspects of sensorimotor behavior dynamically across time.
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Affiliation(s)
- Ahmad Alhourani
- Department of Neurological Surgery, University of Louisville, Louisville, KY 40292, USA
| | - Anna Korzeniewska
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Thomas A Wozny
- Department of Neurological Surgery, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Witold J Lipski
- Department of Neurological Surgery, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Efstathios D Kondylis
- Department of Neurological Surgery, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Avniel S Ghuman
- Department of Neurological Surgery, University of Pittsburgh, Pittsburgh, PA 15213, USA.,Brain Institute, University of Pittsburgh, Pittsburgh, PA 15260, USA
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Donald J Crammond
- Department of Neurological Surgery, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Robert S Turner
- Brain Institute, University of Pittsburgh, Pittsburgh, PA 15260, USA.,Department of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA
| | - R Mark Richardson
- Department of Neurosurgery, Massachusetts General Hospital, Boston, MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
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16
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Jurgiel J, Miyakoshi M, Dillon A, Piacentini J, Makeig S, Loo SK. Inhibitory control in children with tic disorder: aberrant fronto-parietal network activity and connectivity. Brain Commun 2021; 3:fcab067. [PMID: 33977267 PMCID: PMC8093924 DOI: 10.1093/braincomms/fcab067] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 02/23/2021] [Accepted: 02/26/2021] [Indexed: 12/03/2022] Open
Abstract
Chronic tic disorders, including Tourette syndrome, are typically thought to have deficits in cognitive inhibition and top down cognitive control due to the frequent and repetitive occurrence of tics, yet studies reporting task performance results have been equivocal. Despite similar behavioural performance, individuals with chronic tic disorder have exhibited aberrant patterns of neural activation in multiple frontal and parietal regions relative to healthy controls during inhibitory control paradigms. In addition to these top down attentional control regions, widespread alterations in brain activity across multiple neural networks have been reported. There is a dearth, however, of studies examining event-related connectivity during cognitive inhibitory paradigms among affected individuals. The goal of this study was to characterize neural oscillatory activity and effective connectivity, using a case–control design, among children with and without chronic tic disorder during performance of a cognitive inhibition task. Electroencephalogram data were recorded in a cohort of children aged 8–12 years old (60 with chronic tic disorder, 35 typically developing controls) while they performed a flanker task. While task accuracy did not differ by diagnosis, children with chronic tic disorder displayed significant cortical source-level, event-related spectral power differences during incongruent flanker trials, which required inhibitory control. Specifically, attenuated broad band oscillatory power modulation within the anterior cingulate cortex was observed relative to controls. Whole brain effective connectivity analyses indicated that children with chronic tic disorder exhibit greater information flow between the anterior cingulate and other fronto-parietal network hubs (midcingulate cortex and precuneus) relative to controls, who instead showed stronger connectivity between central and posterior nodes. Spectral power within the anterior cingulate was not significantly correlated with any connectivity edges, suggesting lower power and higher connectivity are independent (versus resultant) neural mechanisms. Significant correlations between clinical features, task performance and anterior cingulate spectral power and connectivity suggest this region is associated with tic impairment (r = −0.31, P = 0.03) and flanker task incongruent trial accuracy (r’s = −0.27 to −0.42, P’s = 0.0008–0.04). Attenuated activation of the anterior cingulate along with dysregulated information flow between and among nodes within the fronto-parietal attention network may be neural adaptations that result from frequent engagement of neural pathways needed for inhibitory control in chronic tic disorder.
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Affiliation(s)
- Joseph Jurgiel
- Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Makoto Miyakoshi
- Swartz Center for Neural Computation, University of California, San Diego, La Jolla, CA 92093, USA
| | - Andrea Dillon
- Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - John Piacentini
- Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Scott Makeig
- Swartz Center for Neural Computation, University of California, San Diego, La Jolla, CA 92093, USA
| | - Sandra K Loo
- Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA 90095, USA
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17
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Wang Y, Korzeniewska A, Usami K, Valenzuela A, Crone NE. The Dynamics of Language Network Interactions in Lexical Selection: An Intracranial EEG Study. Cereb Cortex 2021; 31:2058-2070. [PMID: 33283856 PMCID: PMC7945024 DOI: 10.1093/cercor/bhaa344] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 10/18/2020] [Accepted: 10/22/2020] [Indexed: 11/14/2022] Open
Abstract
Speaking in sentences requires selection from contextually determined lexical representations. Although posterior temporal cortex (PTC) and Broca's areas play important roles in storage and selection, respectively, of lexical representations, there has been no direct evidence for physiological interactions between these areas on time scales typical of lexical selection. Using intracranial recordings of cortical population activity indexed by high-gamma power (70-150 Hz) modulations, we studied the causal dynamics of cortical language networks while epilepsy surgery patients performed a sentence completion task in which the number of potential lexical responses was systematically varied. Prior to completion of sentences with more response possibilities, Broca's area was not only more active, but also exhibited more local network interactions with and greater top-down influences on PTC, consistent with activation of, and competition between, more lexical representations. These findings provide the most direct experimental support yet for network dynamics playing a role in lexical selection among competing alternatives during speech production.
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Affiliation(s)
- Yujing Wang
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
- Fischell Department of Bioengineering, University of Maryland College Park, College Park, MD 20742, USA
| | - Anna Korzeniewska
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Kiyohide Usami
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
- Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Sakyoku, Kyoto 606-8507, Japan
| | - Alyssandra Valenzuela
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
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18
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Demuru M, Kalitzin S, Zweiphenning W, van Blooijs D, Van't Klooster M, Van Eijsden P, Leijten F, Zijlmans M. The value of intra-operative electrographic biomarkers for tailoring during epilepsy surgery: from group-level to patient-level analysis. Sci Rep 2020; 10:14654. [PMID: 32887896 PMCID: PMC7474097 DOI: 10.1038/s41598-020-71359-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 04/23/2020] [Indexed: 01/08/2023] Open
Abstract
Signal analysis biomarkers, in an intra-operative setting, may be complementary tools to guide and tailor the resection in drug-resistant focal epilepsy patients. Effective assessment of biomarker performances are needed to evaluate their clinical usefulness and translation. We defined a realistic ground-truth scenario and compared the effectiveness of different biomarkers alone and combined to localize epileptogenic tissue during surgery. We investigated the performances of univariate, bivariate and multivariate signal biomarkers applied to 1 min inter-ictal intra-operative electrocorticography to discriminate between epileptogenic and non-epileptogenic locations in 47 drug-resistant people with epilepsy (temporal and extra-temporal) who had been seizure-free one year after the operation. The best result using a single biomarker was obtained using the phase-amplitude coupling measure for which the epileptogenic tissue was localized in 17 out of 47 patients. Combining the whole set of biomarkers provided an improvement of the performances: 27 out of 47 patients. Repeating the analysis only on the temporal-lobe resections we detected the epileptogenic tissue in 29 out of 30 combining all the biomarkers. We suggest that the assessment of biomarker performances on a ground-truth scenario is required to have a proper estimate on how biomarkers translate into clinical use. Phase-amplitude coupling seems the best performing single biomarker and combining biomarkers improves localization of epileptogenic tissue. Performance achieved is not adequate as a tool in the operation theater yet, but it can improve the understanding of pathophysiological process.
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Affiliation(s)
- Matteo Demuru
- Stichting Epilepsie Instellingen Nederland (SEIN), Heemstede, The Netherlands.
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands.
| | - Stiliyan Kalitzin
- Stichting Epilepsie Instellingen Nederland (SEIN), Heemstede, The Netherlands
- Image Sciences Institute, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Willemiek Zweiphenning
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Dorien van Blooijs
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Maryse Van't Klooster
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Pieter Van Eijsden
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Frans Leijten
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Maeike Zijlmans
- Stichting Epilepsie Instellingen Nederland (SEIN), Heemstede, The Netherlands
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
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19
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Korzeniewska A, Wang Y, Benz HL, Fifer MS, Collard M, Milsap G, Cervenka MC, Martin A, Gotts SJ, Crone NE. Changes in human brain dynamics during behavioral priming and repetition suppression. Prog Neurobiol 2020; 189:101788. [PMID: 32198060 DOI: 10.1016/j.pneurobio.2020.101788] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 01/13/2020] [Accepted: 03/13/2020] [Indexed: 11/29/2022]
Abstract
Behavioral responses to a perceptual stimulus are typically faster with repeated exposure to the stimulus (behavioral priming). This implicit learning mechanism is critical for survival but impaired in a variety of neurological disorders, including Alzheimer's disease. Many studies of the neural bases for behavioral priming have encountered an interesting paradox: in spite of faster behavioral responses, repeated stimuli usually elicit weaker neural responses (repetition suppression). Several neurophysiological models have been proposed to resolve this paradox, but noninvasive techniques for human studies have had insufficient spatial-temporal precision for testing their predictions. Here, we used the unparalleled precision of electrocorticography (ECoG) to analyze the timing and magnitude of task-related changes in neural activation and propagation while patients named novel vs repeated visual objects. Stimulus repetition was associated with faster verbal responses and decreased neural activation (repetition suppression) in ventral occipito-temporal cortex (VOTC) and left prefrontal cortex (LPFC). Interestingly, we also observed increased neural activation (repetition enhancement) in LPFC and other recording sites. Moreover, with analysis of high gamma propagation we observed increased top-down propagation from LPFC into VOTC, preceding repetition suppression. The latter results indicate that repetition suppression and behavioral priming are associated with strengthening of top-down network influences on perceptual processing, consistent with predictive coding models of repetition suppression, and they support a central role for changes in large-scale cortical dynamics in achieving more efficient and rapid behavioral responses.
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Affiliation(s)
- Anna Korzeniewska
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA.
| | - Yujing Wang
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
| | - Heather L Benz
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
| | - Matthew S Fifer
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
| | - Max Collard
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
| | - Griffin Milsap
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
| | - Mackenzie C Cervenka
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
| | - Alex Martin
- Laboratory of Brain and Cognition, National Institute of Mental Health, Bethesda, Maryland, 20852, USA
| | - Stephen J Gotts
- Laboratory of Brain and Cognition, National Institute of Mental Health, Bethesda, Maryland, 20852, USA
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University, Baltimore, Maryland, 21287, USA
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20
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Maharathi B, Loeb JA, Patton J. Central sulcus is a barrier to causal propagation in epileptic networks. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:2555-2559. [PMID: 31946418 DOI: 10.1109/embc.2019.8857401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
the functional interactions of different brain regions are dependent of their underlying structural connectivity. These interactions are important for normal brain activity as well as in epileptic disorders where spontaneous epileptic discharges are generated. To understand the effects of brain topography on both normal and epileptic functional networks, we evaluated propagation frequency with respect to geodesic distance and the specific role of sulcal patterns in modulating these functional connections. We implemented a multimodal approach combining Electrocorticography (ECoG) and magnetic resonance imaging (MRI) to evaluate the relationships between epileptic and non-epileptic networks as they are related to structural connectivity in the human brain. We analyzed interictal ECoG along with MRI 3D reconstructions from seven epileptic patients and found that interictal full-dataset network propagations travel to both nearby and distant cortical locations, however with longer distance the propagations occurrence attenuates dramatically. We also discovered that the central sulcus acts as a strong barrier allowing only 30% of the propagation to cross central sulcus whereas the rest of the 70% propagations are observed on the same side of the sulcus. Epileptic spike propagations, however, were more highly localized with significantly less distant spread and had further reduction in spread across sulci. This is a novel approach to explore the structural influence of brain topography on the functional network and would help understand the interaction of different brain regions and how these are altered in patients with epilepsy. This approach could assist physician decision making during epilepsy surgery by revealing an appropriate brain network and cortical interactions.
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21
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Abstract
Human brain function research has evolved dramatically in the last decades. In this chapter the role of modern methods of recording brain activity in understanding human brain function is explained. Current knowledge of brain function relevant to brain-computer interface (BCI) research is detailed, with an emphasis on the motor system which provides an exceptional level of detail to decoding of intended or attempted movements in paralyzed beneficiaries of BCI technology and translation to computer-mediated actions. BCI technologies that stand to benefit the most of the detailed organization of the human cortex are, and for the foreseeable future are likely to be, reliant on intracranial electrodes. These evolving technologies are expected to enable severely paralyzed people to regain the faculty of movement and speech in the coming decades.
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Affiliation(s)
- Nick F Ramsey
- Brain Center, University Medical Center Utrecht, Utrecht, The Netherlands.
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22
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Li H, Wang Y, Tanabe S, Sun Y, Yan G, Quigg MS, Zhang T. Mapping epileptic directional brain networks using intracranial EEG data. Biostatistics 2019; 22:613-628. [PMID: 31879751 DOI: 10.1093/biostatistics/kxz056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 11/26/2019] [Accepted: 11/29/2019] [Indexed: 11/13/2022] Open
Abstract
The human brain is a directional network system, in which brain regions are network nodes and the influence exerted by one region on another is a network edge. We refer to this directional information flow from one region to another as directional connectivity. Seizures arise from an epileptic directional network; abnormal neuronal activities start from a seizure onset zone and propagate via a network to otherwise healthy brain regions. As such, effective epilepsy diagnosis and treatment require accurate identification of directional connections among regions, i.e., mapping of epileptic patients' brain networks. This article aims to understand the epileptic brain network using intracranial electroencephalographic data-recordings of epileptic patients' brain activities in many regions. The most popular models for directional connectivity use ordinary differential equations (ODE). However, ODE models are sensitive to data noise and computationally costly. To address these issues, we propose a high-dimensional state-space multivariate autoregression (SSMAR) model for the brain's directional connectivity. Different from standard multivariate autoregression and SSMAR models, the proposed SSMAR features a cluster structure, where the brain network consists of several clusters of densely connected brain regions. We develop an expectation-maximization algorithm to estimate the proposed model and use it to map the interregional networks of epileptic patients in different seizure stages. Our method reveals the evolution of brain networks during seizure development.
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Affiliation(s)
- Huazhang Li
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
| | - Yaotian Wang
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
| | - Seiji Tanabe
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
| | - Yinge Sun
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
| | - Guofen Yan
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
| | - Mark S Quigg
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
| | - Tingting Zhang
- Department of Statistics, University of Virginia 148 Amphitheater Way, Charlottesville, VA 22904-4135, USA
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23
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Muñoz F, Casado P, Hernández-Gutiérrez D, Jiménez-Ortega L, Fondevila S, Espuny J, Sánchez-García J, Martín-Loeches M. Neural Dynamics in the Processing of Personal Objects as an Index of the Brain Representation of the Self. Brain Topogr 2019; 33:86-100. [DOI: 10.1007/s10548-019-00748-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 11/21/2019] [Indexed: 10/25/2022]
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24
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Mazurek KA, Richardson D, Abraham N, Foxe JJ, Freedman EG. Utilizing High-Density Electroencephalography and Motion Capture Technology to Characterize Sensorimotor Integration While Performing Complex Actions. IEEE Trans Neural Syst Rehabil Eng 2019; 28:287-296. [PMID: 31567095 DOI: 10.1109/tnsre.2019.2941574] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Studies of sensorimotor integration often use sensory stimuli that require a simple motor response, such as a reach or a grasp. Recent advances in neural recording techniques, motion capture technologies, and time-synchronization methods enable studying sensorimotor integration using more complex sensory stimuli and performed actions. Here, we demonstrate that prehensile actions that require using complex sensory instructions for manipulating different objects can be characterized using high-density electroencephalography and motion capture systems. In 20 participants, we presented stimuli in different sensory modalities (visual, auditory) containing different contextual information about the object with which to interact. Neural signals recorded near motor cortex and posterior parietal cortex discharged based on both the instruction delivered and object manipulated. Additionally, kinematics of the wrist movements could be discriminated between participants. These findings demonstrate a proof-of-concept behavioral paradigm for studying sensorimotor integration of multidimensional sensory stimuli to perform complex movements. The designed framework will prove vital for studying neural control of movements in clinical populations in which sensorimotor integration is impaired due to information no longer being communicated correctly between brain regions (e.g. stroke). Such a framework is the first step towards developing a neural rehabilitative system for restoring function more effectively.
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Zweiphenning WJEM, Keijzer HM, van Diessen E, van ‘t Klooster MA, van Klink NEC, Leijten FSS, van Rijen PC, van Putten MJAM, Braun KPJ, Zijlmans M. Increased gamma and decreased fast ripple connections of epileptic tissue: A high-frequency directed network approach. Epilepsia 2019; 60:1908-1920. [PMID: 31329277 PMCID: PMC6852371 DOI: 10.1111/epi.16296] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2017] [Revised: 07/01/2019] [Accepted: 07/02/2019] [Indexed: 01/11/2023]
Abstract
OBJECTIVE New insights into high-frequency electroencephalographic activity and network analysis provide potential tools to improve delineation of epileptic tissue and increase the chance of postoperative seizure freedom. Based on our observation of high-frequency oscillations "spreading outward" from the epileptic source, we hypothesize that measures of directed connectivity in the high-frequency range distinguish epileptic from healthy brain tissue. METHODS We retrospectively selected refractory epilepsy patients with a malformation of cortical development or tumor World Health Organization grade I/II who underwent epilepsy surgery with intraoperative electrocorticography for tailoring the resection based on spikes. We assessed directed functional connectivity in the theta (4-8 Hz), gamma (30-80 Hz), ripple (80-250 Hz), and fast ripple (FR; 250-500 Hz) bands using the short-time direct directed transfer function, and calculated the total, incoming, and outgoing propagation strength for each electrode. We compared network measures of electrodes covering the resected and nonresected areas separately for patients with good and poor outcome, and of electrodes with and without spikes, ripples, and FRs (group level: paired t test; patient level: Mann-Whitney U test). We selected the measure that could best identify the resected area and channels with epileptic events using the area under the receiver operating characteristic curve, and calculated the positive and negative predictive value, sensitivity, and specificity. RESULTS We found higher total and outstrength in the ripple and gamma bands in resected tissue in patients with good outcome (rippletotal : P = .01; rippleout : P = .04; gammatotal : P = .01; gammaout : P = .01). Channels with events showed lower total and instrength, and higher outstrength in the FR band, and higher total and outstrength in the ripple, gamma, and theta bands (FRtotal : P = .05; FRin : P < .01; FRout : P = .02; gammatotal : P < .01; gammain : P = .01; gammaout : P < .01; thetatotal : P = .01; thetaout : P = .01). The total strength in the gamma band was most distinctive at the channel level (positive predictive value [PPV]good = 74%, PPVpoor = 43%). SIGNIFICANCE Interictally, epileptic tissue is isolated in the FR band and acts as a driver up to the (fast) ripple frequency range. The gamma band total strength seems promising to delineate epileptic tissue intraoperatively.
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Affiliation(s)
- Willemiek J. E. M. Zweiphenning
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Hanneke M. Keijzer
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
- MIRA Institute for Biomedical Technology and Technical MedicineClinical Neurophysiology GroupUniversity of TwenteEnschedethe Netherlands
| | - Eric van Diessen
- Department of Pediatric NeurologyUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Maryse A. van ‘t Klooster
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Nicole E. C. van Klink
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Frans S. S. Leijten
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Peter C. van Rijen
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Michel J. A. M. van Putten
- MIRA Institute for Biomedical Technology and Technical MedicineClinical Neurophysiology GroupUniversity of TwenteEnschedethe Netherlands
| | - Kees P. J. Braun
- Department of Pediatric NeurologyUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
| | - Maeike Zijlmans
- Department of Neurology and NeurosurgeryUniversity Medical Center Utrecht Brain CenterUtrecht UniversityUtrechtthe Netherlands
- Epilepsy Foundation of the NetherlandsHeemstedethe Netherlands
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Dynamic Brain Interactions during Picture Naming. eNeuro 2019; 6:ENEURO.0472-18.2019. [PMID: 31196941 PMCID: PMC6624411 DOI: 10.1523/eneuro.0472-18.2019] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Revised: 04/04/2019] [Accepted: 05/17/2019] [Indexed: 11/21/2022] Open
Abstract
Brain computations involve multiple processes by which sensory information is encoded and transformed to drive behavior. These computations are thought to be mediated by dynamic interactions between populations of neurons. Here, we demonstrate that human brains exhibit a reliable sequence of neural interactions during speech production. We use an autoregressive Hidden Markov Model (ARHMM) to identify dynamical network states exhibited by electrocorticographic signals recorded from human neurosurgical patients. Our method resolves dynamic latent network states on a trial-by-trial basis. We characterize individual network states according to the patterns of directional information flow between cortical regions of interest. These network states occur consistently and in a specific, interpretable sequence across trials and subjects: the data support the hypothesis of a fixed-length visual processing state, followed by a variable-length language state, and then by a terminal articulation state. This empirical evidence validates classical psycholinguistic theories that have posited such intermediate states during speaking. It further reveals these state dynamics are not localized to one brain area or one sequence of areas, but are instead a network phenomenon.
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Usami K, Korzeniewska A, Matsumoto R, Kobayashi K, Hitomi T, Matsuhashi M, Kunieda T, Mikuni N, Kikuchi T, Yoshida K, Miyamoto S, Takahashi R, Ikeda A, Crone NE. The neural tides of sleep and consciousness revealed by single-pulse electrical brain stimulation. Sleep 2019; 42:zsz050. [PMID: 30794319 PMCID: PMC6559171 DOI: 10.1093/sleep/zsz050] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2018] [Revised: 02/01/2019] [Indexed: 12/12/2022] Open
Abstract
Wakefulness and sleep arise from global changes in brain physiology that may also govern the flow of neural activity between cortical regions responsible for perceptual processing versus planning and action. To test whether and how the sleep/wake cycle affects the overall propagation of neural activity in large-scale brain networks, we applied single-pulse electrical stimulation (SPES) in patients implanted with intracranial EEG electrodes for epilepsy surgery. SPES elicited cortico-cortical spectral responses at high-gamma frequencies (CCSRHG, 80-150 Hz), which indexes changes in neuronal population firing rates. Using event-related causality (ERC) analysis, we found that the overall patterns of neural propagation among sites with CCSRHG were different during wakefulness and different sleep stages. For example, stimulation of frontal lobe elicited greater propagation toward parietal lobe during slow-wave sleep than during wakefulness. During REM sleep, we observed a decrease in propagation within frontal lobe, and an increase in propagation within parietal lobe, elicited by frontal and parietal stimulation, respectively. These biases in the directionality of large-scale cortical network dynamics during REM sleep could potentially account for some of the unique experiential aspects of this sleep stage. Together these findings suggest that the regulation of conscious awareness and sleep is associated with differences in the balance of neural propagation across large-scale frontal-parietal networks.
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Affiliation(s)
- Kiyohide Usami
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD
- Department of Neurology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Anna Korzeniewska
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD
| | - Riki Matsumoto
- Department of Neurology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Katsuya Kobayashi
- Department of Neurology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Takefumi Hitomi
- Department of Clinical Laboratory Medicine, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
- Department of Respiratory Care and Sleep Control Medicine, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Masao Matsuhashi
- Research and Educational Unit of Leaders for Integrated Medical System, Kyoto University Graduate School of medicine, Sakyo-ku, Kyoto, Japan
- Human Brain Research Center, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Takeharu Kunieda
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
- Department of Neurosurgery, Ehime University Graduate School of Medicine, Shizukawa Toon city, Ehime, Japan
| | - Nobuhiro Mikuni
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
- Department of Neurosurgery, Sapporo Medical University, Chuo-ku, Sapporo, Japan
| | - Takayuki Kikuchi
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Kazumichi Yoshida
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Susumu Miyamoto
- Department of Neurosurgery, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Ryosuke Takahashi
- Department of Neurology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Akio Ikeda
- Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD
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Moharramipour A, Mostame P, Hossein-Zadeh GA, Wheless JW, Babajani-Feremi A. Comparison of statistical tests in effective connectivity analysis of ECoG data. J Neurosci Methods 2018; 308:317-329. [DOI: 10.1016/j.jneumeth.2018.08.026] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Revised: 08/24/2018] [Accepted: 08/25/2018] [Indexed: 11/26/2022]
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Wen J, Yu T, Wang X, Liu C, Zhou T, Li Y, Li X. Continuous behavioral tracing-based online functional brain mapping with intracranial electroencephalography. J Neural Eng 2018; 15:054002. [DOI: 10.1088/1741-2552/aad405] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Granger causal connectivity dissociates navigation networks that subserve allocentric and egocentric path integration. Brain Res 2017; 1679:91-100. [PMID: 29158177 DOI: 10.1016/j.brainres.2017.11.016] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2017] [Revised: 11/02/2017] [Accepted: 11/16/2017] [Indexed: 11/23/2022]
Abstract
Studies on spatial navigation demonstrate a significant role of the retrosplenial complex (RSC) in the transformation of egocentric and allocentric information into complementary spatial reference frames (SRFs). The tight anatomical connections of the RSC with a wide range of other cortical regions processing spatial information support its vital role within the human navigation network. To better understand how different areas of the navigational network interact, we investigated the dynamic causal interactions of brain regions involved in solving a virtual navigation task. EEG signals were decomposed by independent component analysis (ICA) and subsequently examined for information flow between clusters of independent components (ICs) using direct short-time directed transfer function (sdDTF). The results revealed information flow between the anterior cingulate cortex and the left prefrontal cortex in the theta (4-7 Hz) frequency band and between the prefrontal, motor, parietal, and occipital cortices as well as the RSC in the alpha (8-13 Hz) frequency band. When participants prefered to use distinct reference frames (egocentric vs. allocentric) during navigation was considered, a dominant occipito-parieto-RSC network was identified in allocentric navigators. These results are in line with the assumption that the RSC, parietal, and occipital cortices are involved in transforming egocentric visual-spatial information into an allocentric reference frame. Moreover, the RSC demonstrated the strongest causal flow during changes in orientation, suggesting that this structure directly provides information on heading changes in humans.
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Jelfs B, Chan RHM. Directionality indices: Testing information transfer with surrogate correction. Phys Rev E 2017; 96:052220. [PMID: 29347680 DOI: 10.1103/physreve.96.052220] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Indexed: 06/07/2023]
Abstract
Directionality indices can be used as an indicator of the asymmetry in coupling between systems and have found particular application in relation to neurological systems. The directionality index between two systems is a function of measures of information transfer in both directions. Here we illustrate that before inferring the directionality of coupling it is first necessary to consider the use of appropriate tests of significance. We propose a surrogate corrected directionality index which incorporates such testing. We also highlight the differences between testing the significance of the directionality index itself versus testing the individual measures of information transfer in each direction. To validate the approach we compared two different methods of estimating coupling, both of which have previously been used to estimate directionality indices. These were the modeling-based evolution map approach and a conditional mutual information (CMI) method for calculating dynamic information rates. For the CMI-based approach we also compared two different methods for estimating the CMI, an equiquantization-based estimator and a k-nearest neighbors estimator.
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Affiliation(s)
- Beth Jelfs
- Department of Electronic Engineering and Centre for Biosystems, Neuroscience, & Nanotechnology, City University of Hong Kong, Hong Kong
| | - Rosa H M Chan
- Department of Electronic Engineering and Centre for Biosystems, Neuroscience, & Nanotechnology, City University of Hong Kong, Hong Kong
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A study of problems encountered in Granger causality analysis from a neuroscience perspective. Proc Natl Acad Sci U S A 2017; 114:E7063-E7072. [PMID: 28778996 DOI: 10.1073/pnas.1704663114] [Citation(s) in RCA: 130] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Granger causality methods were developed to analyze the flow of information between time series. These methods have become more widely applied in neuroscience. Frequency-domain causality measures, such as those of Geweke, as well as multivariate methods, have particular appeal in neuroscience due to the prevalence of oscillatory phenomena and highly multivariate experimental recordings. Despite its widespread application in many fields, there are ongoing concerns regarding the applicability of Granger causality methods in neuroscience. When are these methods appropriate? How reliably do they recover the system structure underlying the observed data? What do frequency-domain causality measures tell us about the functional properties of oscillatory neural systems? In this paper, we analyze fundamental properties of Granger-Geweke (GG) causality, both computational and conceptual. Specifically, we show that (i) GG causality estimates can be either severely biased or of high variance, both leading to spurious results; (ii) even if estimated correctly, GG causality estimates alone are not interpretable without examining the component behaviors of the system model; and (iii) GG causality ignores critical components of a system's dynamics. Based on this analysis, we find that the notion of causality quantified is incompatible with the objectives of many neuroscience investigations, leading to highly counterintuitive and potentially misleading results. Through the analysis of these problems, we provide important conceptual clarification of GG causality, with implications for other related causality approaches and for the role of causality analyses in neuroscience as a whole.
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Bartolomei F, Lagarde S, Wendling F, McGonigal A, Jirsa V, Guye M, Bénar C. Defining epileptogenic networks: Contribution of SEEG and signal analysis. Epilepsia 2017; 58:1131-1147. [DOI: 10.1111/epi.13791] [Citation(s) in RCA: 262] [Impact Index Per Article: 37.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/10/2017] [Indexed: 12/25/2022]
Affiliation(s)
- Fabrice Bartolomei
- Institut de Neurosciences des Systèmes; Aix Marseille University; Marseille France
- AP-HM; Service de Neurophysiologie Clinique; Hôpital de la Timone; Marseille France
| | - Stanislas Lagarde
- Institut de Neurosciences des Systèmes; Aix Marseille University; Marseille France
- AP-HM; Service de Neurophysiologie Clinique; Hôpital de la Timone; Marseille France
| | - Fabrice Wendling
- U1099; INSERM; Rennes France
- Laboratoire de Traitement du Signal et de l'Image; Université de Rennes 1; Rennes France
| | - Aileen McGonigal
- Institut de Neurosciences des Systèmes; Aix Marseille University; Marseille France
- AP-HM; Service de Neurophysiologie Clinique; Hôpital de la Timone; Marseille France
| | - Viktor Jirsa
- Institut de Neurosciences des Systèmes; Aix Marseille University; Marseille France
| | - Maxime Guye
- Centre d'Exploration Métabolique par Résonance Magnétique (CEMEREM); APHM; Hôpitaux de la Timone; Marseille France
| | - Christian Bénar
- Institut de Neurosciences des Systèmes; Aix Marseille University; Marseille France
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Nishida M, Korzeniewska A, Crone NE, Toyoda G, Nakai Y, Ofen N, Brown EC, Asano E. Brain network dynamics in the human articulatory loop. Clin Neurophysiol 2017. [PMID: 28622530 DOI: 10.1016/j.clinph.2017.05.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
OBJECTIVE The articulatory loop is a fundamental component of language function, involved in the short-term buffer of auditory information followed by its vocal reproduction. We characterized the network dynamics of the human articulatory loop, using invasive recording and stimulation. METHODS We measured high-gamma activity70-110 Hz recorded intracranially when patients with epilepsy either only listened to, or listened to and then reproduced two successive tones by humming. We also conducted network analyses, and analyzed behavioral responses to cortical stimulation. RESULTS Presentation of the initial tone elicited high-gamma augmentation bilaterally in the superior-temporal gyrus (STG) within 40ms, and in the precentral and inferior-frontal gyri (PCG and IFG) within 160ms after sound onset. During presentation of the second tone, high-gamma augmentation was reduced in STG but enhanced in IFG. The task requiring tone reproduction further enhanced high-gamma augmentation in PCG during and after sound presentation. Event-related causality (ERC) analysis revealed dominant flows within STG immediately after sound onset, followed by reciprocal interactions involving PCG and IFG. Measurement of cortico-cortical evoked-potentials (CCEPs) confirmed connectivity between distant high-gamma sites in the articulatory loop. High-frequency stimulation of precentral high-gamma sites in either hemisphere induced speech arrest, inability to control vocalization, or forced vocalization. Vocalization of tones was accompanied by high-gamma augmentation over larger extents of PCG. CONCLUSIONS Bilateral PCG rapidly and directly receives feed-forward signals from STG, and may promptly initiate motor planning including sub-vocal rehearsal for short-term buffering of auditory stimuli. Enhanced high-gamma augmentation in IFG during presentation of the second tone may reflect high-order processing of the tone sequence. SIGNIFICANCE The articulatory loop employs sustained reciprocal propagation of neural activity across a network of cortical sites with strong neurophysiological connectivity.
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Affiliation(s)
- Masaaki Nishida
- Department of Pediatrics, Children's Hospital of Michigan, Wayne State University, Detroit Medical Center, Detroit, MI 48201, USA; Department of Anesthesiology, Hanyu General Hospital, Hanyu City, Saitama 348-8508, Japan
| | - Anna Korzeniewska
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21287, USA.
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University, Baltimore, MD 21287, USA
| | - Goichiro Toyoda
- Department of Pediatrics, Children's Hospital of Michigan, Wayne State University, Detroit Medical Center, Detroit, MI 48201, USA
| | - Yasuo Nakai
- Department of Pediatrics, Children's Hospital of Michigan, Wayne State University, Detroit Medical Center, Detroit, MI 48201, USA
| | - Noa Ofen
- Institute of Gerontology, Wayne State University, Detroit, MI 48202, USA; Department of Psychology, Wayne State University, Detroit, MI 48202, USA
| | - Erik C Brown
- Department of Neurosurgery, Oregon Health and Science University, Portland, OR, USA
| | - Eishi Asano
- Department of Pediatrics, Children's Hospital of Michigan, Wayne State University, Detroit Medical Center, Detroit, MI 48201, USA; Department of Neurology, Children's Hospital of Michigan, Wayne State University, Detroit Medical Center, Detroit, MI 48201, USA.
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Courellis H, Mullen T, Poizner H, Cauwenberghs G, Iversen JR. EEG-Based Quantification of Cortical Current Density and Dynamic Causal Connectivity Generalized across Subjects Performing BCI-Monitored Cognitive Tasks. Front Neurosci 2017; 11:180. [PMID: 28566997 PMCID: PMC5434743 DOI: 10.3389/fnins.2017.00180] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 03/20/2017] [Indexed: 11/13/2022] Open
Abstract
Quantification of dynamic causal interactions among brain regions constitutes an important component of conducting research and developing applications in experimental and translational neuroscience. Furthermore, cortical networks with dynamic causal connectivity in brain-computer interface (BCI) applications offer a more comprehensive view of brain states implicated in behavior than do individual brain regions. However, models of cortical network dynamics are difficult to generalize across subjects because current electroencephalography (EEG) signal analysis techniques are limited in their ability to reliably localize sources across subjects. We propose an algorithmic and computational framework for identifying cortical networks across subjects in which dynamic causal connectivity is modeled among user-selected cortical regions of interest (ROIs). We demonstrate the strength of the proposed framework using a "reach/saccade to spatial target" cognitive task performed by 10 right-handed individuals. Modeling of causal cortical interactions was accomplished through measurement of cortical activity using (EEG), application of independent component clustering to identify cortical ROIs as network nodes, estimation of cortical current density using cortically constrained low resolution electromagnetic brain tomography (cLORETA), multivariate autoregressive (MVAR) modeling of representative cortical activity signals from each ROI, and quantification of the dynamic causal interaction among the identified ROIs using the Short-time direct Directed Transfer function (SdDTF). The resulting cortical network and the computed causal dynamics among its nodes exhibited physiologically plausible behavior, consistent with past results reported in the literature. This physiological plausibility of the results strengthens the framework's applicability in reliably capturing complex brain functionality, which is required by applications, such as diagnostics and BCI.
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Affiliation(s)
- Hristos Courellis
- Swartz Center for Computational Neuroscience, University of California, San DiegoSan Diego, CA, United States.,Department of Bioengineering, University of California, San DiegoSan Diego, CA, United States
| | - Tim Mullen
- Swartz Center for Computational Neuroscience, University of California, San DiegoSan Diego, CA, United States
| | - Howard Poizner
- Institute for Neural Computation, University of California, San DiegoSan Diego, CA, United States
| | - Gert Cauwenberghs
- Department of Bioengineering, University of California, San DiegoSan Diego, CA, United States.,Institute for Neural Computation, University of California, San DiegoSan Diego, CA, United States
| | - John R Iversen
- Swartz Center for Computational Neuroscience, University of California, San DiegoSan Diego, CA, United States
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Hu S, Jia X, Zhang J, Kong W, Cao Y. Shortcomings/Limitations of Blockwise Granger Causality and Advances of Blockwise New Causality. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2016; 27:2588-2601. [PMID: 26600378 DOI: 10.1109/tnnls.2015.2497681] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Multivariate blockwise Granger causality (BGC) is used to reflect causal interactions among blocks of multivariate time series. In particular, spectral BGC and conditional spectral BGC are used to disclose blockwise causal flow among different brain areas in various frequencies. In this paper, we demonstrate that: 1) BGC in time domain may not necessarily disclose true causality and 2) due to the use of the transfer function or its inverse matrix and partial information of the multivariate linear regression model, both of spectral BGC and conditional spectral BGC have shortcomings and/or limitations, which may inevitably lead to misinterpretation. We then, in time and frequency domains, develop two new multivariate blockwise causality methods for the linear regression model called blockwise new causality (BNC) and spectral BNC, respectively. By several examples, we confirm that BNC measures are more reasonable and sensitive to reflect true causality or trend of true causality than BGC or conditional BGC. Finally, for electroencephalograph data from an epilepsy patient, we analyze event-related potential causality and demonstrate that both of the BGC and BNC methods show significant causality flow in frequency domain, but the spectral BNC method yields satisfactory and convincing results, which are consistent with an event-related time-frequency power spectrum activity. The spectral BGC method is shown to generate misleading results. Thus, we deeply believe that our new blockwise causality definitions as well as our previous NC definitions may have wide applications to reflect true causality among two blocks of time series or two univariate time series in economics, neuroscience, and engineering.
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Kaminski M, Brzezicka A, Kaminski J, Blinowska KJ. Measures of Coupling between Neural Populations Based on Granger Causality Principle. Front Comput Neurosci 2016; 10:114. [PMID: 27833546 PMCID: PMC5080292 DOI: 10.3389/fncom.2016.00114] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Accepted: 10/12/2016] [Indexed: 12/18/2022] Open
Abstract
This paper shortly reviews the measures used to estimate neural synchronization in experimental settings. Our focus is on multivariate measures of dependence based on the Granger causality (G-causality) principle, their applications and performance in respect of robustness to noise, volume conduction, common driving, and presence of a “weak node.” Application of G-causality measures to EEG, intracranial signals and fMRI time series is addressed. G-causality based measures defined in the frequency domain allow the synchronization between neural populations and the directed propagation of their electrical activity to be determined. The time-varying G-causality based measure Short-time Directed Transfer Function (SDTF) supplies information on the dynamics of synchronization and the organization of neural networks. Inspection of effective connectivity patterns indicates a modular structure of neural networks, with a stronger coupling within modules than between them. The hypothetical plausible mechanism of information processing, suggested by the identified synchronization patterns, is communication between tightly coupled modules intermitted by sparser interactions providing synchronization of distant structures.
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Affiliation(s)
- Maciej Kaminski
- Department of Biomedical Physics, Faculty of Physics, University of Warsaw Warsaw, Poland
| | - Aneta Brzezicka
- Department of Psychology, University of Social Sciences and Humanities Warsaw, Poland
| | - Jan Kaminski
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University Torun, Poland
| | - Katarzyna J Blinowska
- Department of Biomedical Physics, Faculty of Physics, University of WarsawWarsaw, Poland; Institute of Biocybernetics and Biomedical Engineering of Polish Academy of SciencesWarsaw, Poland
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Rodrigues PLC, Baccala LA. Statistically significant time-varying neural connectivity estimation using generalized partial directed coherence. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2016:5493-5496. [PMID: 28269501 DOI: 10.1109/embc.2016.7591970] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
This paper illustrates the effectiveness of generalized partial directed coherence (gPDC) in characterizing time-varying neural connectivity by properly extrapolating its single trial asymptotic statistical results to a multi trial setting. Time-varying estimation is performed with a sliding-window procedure based on the proposal in [1], whereby a time-frequency map of the connectivity between channels is built. The technique is validated on a non-linear toy model generating simulated EEG and then applied to a publicly available real EEG dataset for benchmarking purposes.
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Abstract
UNLABELLED Opinions are divided on whether word reading processes occur in a hierarchical, feedforward fashion or within an interactive framework. To critically evaluate these competing theories, we recorded electrocorticographic (ECoG) data from 15 human patients with intractable epilepsy during a word completion task and evaluated brain network dynamics across individuals. We used a novel technique of analyzing multihuman ECoG recordings to identify cortical regions most relevant to processing lexical information. The mid fusiform gyrus showed the strongest, earliest response after stimulus onset, whereas activity was maximal in frontal, dorsal lateral prefrontal, and sensorimotor regions toward articulation onset. To evaluate interregional functional connectivity, ECoG data from electrodes situated over specific cortical regions of interest were fit into linear multivariate autoregressive (MVAR) models. Spectral characteristics of the MVAR models were used to precisely reveal the timing and the magnitude of information flow between localized brain regions. This is the first application of MVAR for developing a comprehensive account of interregional interactions from a word reading ECoG dataset. Our comprehensive findings revealed both top-down and bottom-up influences between higher-level language areas and the mid fusiform gyrus. Our findings thus challenge strictly hierarchical, feedforward views of word reading and suggest that orthographic processes are modulated by prefrontal and sensorimotor regions via an interactive framework. SIGNIFICANCE STATEMENT Word reading is a critical part of everyday life. When the ability to read is disrupted, it can lead to learning disorders, as well as emotional and academic difficulties. The neural mechanisms underlying word reading are not well understood due to limitations in the spatial and temporal specificity of prior word reading studies. Our research analyzed data recorded from sensors implanted directly from surface of human brains while these individuals performed a word reading task. Our research analyzed these recordings to infer how brain regions communicate during word reading. Our original results improve upon current models of word reading and can be used to develop treatment plans for individuals with reading disabilities.
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Collard MJ, Fifer MS, Benz HL, McMullen DP, Wang Y, Milsap GW, Korzeniewska A, Crone NE. Cortical subnetwork dynamics during human language tasks. Neuroimage 2016; 135:261-72. [PMID: 27046113 DOI: 10.1016/j.neuroimage.2016.03.072] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Revised: 03/12/2016] [Accepted: 03/26/2016] [Indexed: 02/07/2023] Open
Abstract
Language tasks require the coordinated activation of multiple subnetworks-groups of related cortical interactions involved in specific components of task processing. Although electrocorticography (ECoG) has sufficient temporal and spatial resolution to capture the dynamics of event-related interactions between cortical sites, it is difficult to decompose these complex spatiotemporal patterns into functionally discrete subnetworks without explicit knowledge of each subnetwork's timing. We hypothesized that subnetworks corresponding to distinct components of task-related processing could be identified as groups of interactions with co-varying strengths. In this study, five subjects implanted with ECoG grids over language areas performed word repetition and picture naming. We estimated the interaction strength between each pair of electrodes during each task using a time-varying dynamic Bayesian network (tvDBN) model constructed from the power of high gamma (70-110Hz) activity, a surrogate for population firing rates. We then reduced the dimensionality of this model using principal component analysis (PCA) to identify groups of interactions with co-varying strengths, which we term functional network components (FNCs). This data-driven technique estimates both the weight of each interaction's contribution to a particular subnetwork, and the temporal profile of each subnetwork's activation during the task. We found FNCs with temporal and anatomical features consistent with articulatory preparation in both tasks, and with auditory and visual processing in the word repetition and picture naming tasks, respectively. These FNCs were highly consistent between subjects with similar electrode placement, and were robust enough to be characterized in single trials. Furthermore, the interaction patterns uncovered by FNC analysis correlated well with recent literature suggesting important functional-anatomical distinctions between processing external and self-produced speech. Our results demonstrate that subnetwork decomposition of event-related cortical interactions is a powerful paradigm for interpreting the rich dynamics of large-scale, distributed cortical networks during human cognitive tasks.
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Affiliation(s)
- Maxwell J Collard
- Department of Neurology, Johns Hopkins University, 600 N. Wolfe St., Meyer 2-161, Baltimore, MD 21287, USA; Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave., Baltimore, MD 21205, USA.
| | - Matthew S Fifer
- Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave., Baltimore, MD 21205, USA
| | - Heather L Benz
- Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave., Baltimore, MD 21205, USA; Center for Devices and Radiological Health, U.S. Food and Drug Administration, 10903 New Hampshire Ave., Silver Spring, MD 20993, USA
| | - David P McMullen
- Department of Neurosurgery, Johns Hopkins University, 600 N. Wolfe St., Baltimore, MD 21287, USA
| | - Yujing Wang
- Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave., Baltimore, MD 21205, USA; Fischell Department of Bioengineering, University of Maryland, Room 2330 Jeong H. Kim Engineering Building (Bldg. # 225), College Park, MD 20742, USA
| | - Griffin W Milsap
- Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave., Baltimore, MD 21205, USA
| | - Anna Korzeniewska
- Department of Neurology, Johns Hopkins University, 600 N. Wolfe St., Meyer 2-161, Baltimore, MD 21287, USA
| | - Nathan E Crone
- Department of Neurology, Johns Hopkins University, 600 N. Wolfe St., Meyer 2-161, Baltimore, MD 21287, USA
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Graph theoretical analysis of EEG effective connectivity in vascular dementia patients during a visual oddball task. Clin Neurophysiol 2016; 127:324-334. [DOI: 10.1016/j.clinph.2015.04.063] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 03/30/2015] [Accepted: 04/20/2015] [Indexed: 11/22/2022]
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Hur YJ, Kim HD. The causal epileptic network identifies the primary epileptogenic zone in Lennox–Gastaut syndrome. Seizure 2015; 33:1-7. [DOI: 10.1016/j.seizure.2015.10.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2014] [Revised: 10/06/2015] [Accepted: 10/07/2015] [Indexed: 11/15/2022] Open
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Discriminant brain connectivity patterns of performance monitoring at average and single-trial levels. Neuroimage 2015; 120:64-74. [DOI: 10.1016/j.neuroimage.2015.07.012] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Revised: 07/02/2015] [Accepted: 07/06/2015] [Indexed: 11/17/2022] Open
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Mullen TR, Kothe CAE, Chi YM, Ojeda A, Kerth T, Makeig S, Jung TP, Cauwenberghs G. Real-Time Neuroimaging and Cognitive Monitoring Using Wearable Dry EEG. IEEE Trans Biomed Eng 2015; 62:2553-67. [PMID: 26415149 DOI: 10.1109/tbme.2015.2481482] [Citation(s) in RCA: 358] [Impact Index Per Article: 39.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
GOAL We present and evaluate a wearable high-density dry-electrode EEG system and an open-source software framework for online neuroimaging and state classification. METHODS The system integrates a 64-channel dry EEG form factor with wireless data streaming for online analysis. A real-time software framework is applied, including adaptive artifact rejection, cortical source localization, multivariate effective connectivity inference, data visualization, and cognitive state classification from connectivity features using a constrained logistic regression approach (ProxConn). We evaluate the system identification methods on simulated 64-channel EEG data. Then, we evaluate system performance, using ProxConn and a benchmark ERP method, in classifying response errors in nine subjects using the dry EEG system. RESULTS Simulations yielded high accuracy (AUC = 0.97 ± 0.021) for real-time cortical connectivity estimation. Response error classification using cortical effective connectivity [short-time direct-directed transfer function (sdDTF)] was significantly above chance with similar performance (AUC) for cLORETA (0.74 ±0.09) and LCMV (0.72 ±0.08) source localization. Cortical ERP-based classification was equivalent to ProxConn for cLORETA (0.74 ±0.16) but significantly better for LCMV (0.82 ±0.12) . CONCLUSION We demonstrated the feasibility for real-time cortical connectivity analysis and cognitive state classification from high-density wearable dry EEG. SIGNIFICANCE This paper is the first validated application of these methods to 64-channel dry EEG. This study addresses a need for robust real-time measurement and interpretation of complex brain activity in the dynamic environment of the wearable setting. Such advances can have broad impact in research, medicine, and brain-computer interfaces. The pipelines are made freely available in the open-source SIFT and BCILAB toolboxes.
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Mullen T, Kothe C, Chi YM, Ojeda A, Kerth T, Makeig S, Cauwenberghs G, Jung TP. Real-time modeling and 3D visualization of source dynamics and connectivity using wearable EEG. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2013:2184-7. [PMID: 24110155 DOI: 10.1109/embc.2013.6609968] [Citation(s) in RCA: 165] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
This report summarizes our recent efforts to deliver real-time data extraction, preprocessing, artifact rejection, source reconstruction, multivariate dynamical system analysis (including spectral Granger causality) and 3D visualization as well as classification within the open-source SIFT and BCILAB toolboxes. We report the application of such a pipeline to simulated data and real EEG data obtained from a novel wearable high-density (64-channel) dry EEG system.
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Kadipasaoglu CM, Forseth K, Whaley M, Conner CR, Rollo MJ, Baboyan VG, Tandon N. Development of grouped icEEG for the study of cognitive processing. Front Psychol 2015; 6:1008. [PMID: 26257673 PMCID: PMC4508923 DOI: 10.3389/fpsyg.2015.01008] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2015] [Accepted: 07/06/2015] [Indexed: 11/21/2022] Open
Abstract
Invasive intracranial EEG (icEEG) offers a unique opportunity to study human cognitive networks at an unmatched spatiotemporal resolution. To date, the contributions of icEEG have been limited to the individual-level analyses or cohorts whose data are not integrated in any way. Here we discuss how grouped approaches to icEEG overcome challenges related to sparse-sampling, correct for individual variations in response and provide statistically valid models of brain activity in a population. By the generation of whole-brain activity maps, grouped icEEG enables the study of intra and interregional dynamics between distributed cortical substrates exhibiting task-dependent activity. In this fashion, grouped icEEG analyses can provide significant advances in understanding the mechanisms by which cortical networks give rise to cognitive functions.
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Affiliation(s)
- Cihan M Kadipasaoglu
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA
| | - Kiefer Forseth
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA
| | - Meagan Whaley
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA ; Department of Computational and Applied Mathematics, Rice University Houston, TX, USA
| | - Christopher R Conner
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA
| | - Matthew J Rollo
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA
| | - Vatche G Baboyan
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA
| | - Nitin Tandon
- Vivian Smith Department of Neurosurgery, University of Texas Health Science Center at Houston Houston, TX, USA ; Texas Medical Center, Mischer Neuroscience Institute, Memorial Hermann Hospital Houston, TX, USA
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Basu I, Kudela P, Korzeniewska A, Franaszczuk PJ, Anderson WS. A study of the dynamics of seizure propagation across micro domains in the vicinity of the seizure onset zone. J Neural Eng 2015; 12:046016. [PMID: 26061006 DOI: 10.1088/1741-2560/12/4/046016] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE The use of micro-electrode arrays to measure electrical activity from the surface of the brain is increasingly being investigated as a means to improve seizure onset zone (SOZ) localization. In this work, we used a multivariate autoregressive model to determine the evolution of seizure dynamics in the [Formula: see text] Hz high frequency band across micro-domains sampled by such micro-electrode arrays. We showed that a directed transfer function (DTF) can be used to estimate the flow of seizure activity in a set of simulated micro-electrode data with known propagation pattern. APPROACH We used seven complex partial seizures recorded from four patients undergoing intracranial monitoring for surgical evaluation to reconstruct the seizure propagation pattern over sliding windows using a DTF measure. MAIN RESULTS We showed that a DTF can be used to estimate the flow of seizure activity in a set of simulated micro-electrode data with a known propagation pattern. In general, depending on the location of the micro-electrode grid with respect to the clinical SOZ and the time from seizure onset, ictal propagation changed in directional characteristics over a 2-10 s time scale, with gross directionality limited to spatial dimensions of approximately [Formula: see text]. It was also seen that the strongest seizure patterns in the high frequency band and their sources over such micro-domains are more stable over time and across seizures bordering the clinically determined SOZ than inside. SIGNIFICANCE This type of propagation analysis might in future provide an additional tool to epileptologists for characterizing epileptogenic tissue. This will potentially help narrowing down resection zones without compromising essential brain functions as well as provide important information about targeting anti-epileptic stimulation devices.
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Affiliation(s)
- Ishita Basu
- Department of Neurosurgery, Johns Hopkins University, MD, USA
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Sobolewski A, Kublik E, Swiejkowski DA, Kamiński J, Wróbel A. Alertness opens the effective flow of sensory information through rat thalamic posterior nucleus. Eur J Neurosci 2015; 41:1321-31. [DOI: 10.1111/ejn.12901] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Accepted: 03/18/2015] [Indexed: 02/03/2023]
Affiliation(s)
- Aleksander Sobolewski
- Department of Neurophysiology; Nencki Institute of Experimental Biology; 3 Pasteur Str. Warsaw 02-093 Poland
| | - Ewa Kublik
- Department of Neurophysiology; Nencki Institute of Experimental Biology; 3 Pasteur Str. Warsaw 02-093 Poland
| | - Daniel A. Swiejkowski
- Department of Neurophysiology; Nencki Institute of Experimental Biology; 3 Pasteur Str. Warsaw 02-093 Poland
| | - Jan Kamiński
- Department of Neurophysiology; Nencki Institute of Experimental Biology; 3 Pasteur Str. Warsaw 02-093 Poland
| | - Andrzej Wróbel
- Department of Neurophysiology; Nencki Institute of Experimental Biology; 3 Pasteur Str. Warsaw 02-093 Poland
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Abstract
For over a century neuroscientists have debated the dynamics by which human cortical language networks allow words to be spoken. Although it is widely accepted that Broca's area in the left inferior frontal gyrus plays an important role in this process, it was not possible, until recently, to detail the timing of its recruitment relative to other language areas, nor how it interacts with these areas during word production. Using direct cortical surface recordings in neurosurgical patients, we studied the evolution of activity in cortical neuronal populations, as well as the Granger causal interactions between them. We found that, during the cued production of words, a temporal cascade of neural activity proceeds from sensory representations of words in temporal cortex to their corresponding articulatory gestures in motor cortex. Broca's area mediates this cascade through reciprocal interactions with temporal and frontal motor regions. Contrary to classic notions of the role of Broca's area in speech, while motor cortex is activated during spoken responses, Broca's area is surprisingly silent. Moreover, when novel strings of articulatory gestures must be produced in response to nonword stimuli, neural activity is enhanced in Broca's area, but not in motor cortex. These unique data provide evidence that Broca's area coordinates the transformation of information across large-scale cortical networks involved in spoken word production. In this role, Broca's area formulates an appropriate articulatory code to be implemented by motor cortex.
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50
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Dynamics of functional and effective connectivity within human cortical motor control networks. Clin Neurophysiol 2014; 126:987-96. [PMID: 25270239 DOI: 10.1016/j.clinph.2014.09.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Revised: 08/22/2014] [Accepted: 09/10/2014] [Indexed: 11/24/2022]
Abstract
OBJECTIVE Praxis, the performance of complex motor gestures, is crucial to the development of motor and social/communicative capacities. Praxis relies on a network consisting of inferior parietal and premotor regions, particularly on the left, and is thought to require transformation of spatio-temporal representations (parietal) into movement sequences (premotor). METHOD We examined praxis network dynamics by measuring EEG effective connectivity while healthy subjects performed a praxis task. RESULTS Propagation from parietal to frontal regions was not statistically greater on the left than the right. However, propagation from left parietal regions to all other regions was significantly greater during gesture preparation than execution. Moreover, during gesture preparation only, propagation from the left parietal region to bilateral frontal regions was greater than reciprocal propagations to the left parietal region. This directional specificity was not observed for the right parietal region. CONCLUSIONS These findings represent direct electrophysiological evidence for directionally predominant propagation in left frontal-parietal networks during praxis behavior, which may reflect neural mechanisms by which representations in the human brain select appropriate motor sequences for subsequent execution. SIGNIFICANCE In addition to bolstering the classic view of praxis network function, these results also demonstrate the relevance of additional information provided by directed connectivity measures.
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