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Lei D, Dong C, Guo H, Ma P, Liu H, Bao N, Kang H, Chen X, Wu Y. A fused multi-subfrequency bands and CBAM SSVEP-BCI classification method based on convolutional neural network. Sci Rep 2024; 14:8616. [PMID: 38616204 PMCID: PMC11016546 DOI: 10.1038/s41598-024-59348-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 04/09/2024] [Indexed: 04/16/2024] Open
Abstract
For the brain-computer interface (BCI) system based on steady-state visual evoked potential (SSVEP), it is difficult to obtain satisfactory classification performance for short-time window SSVEP signals by traditional methods. In this paper, a fused multi-subfrequency bands and convolutional block attention module (CBAM) classification method based on convolutional neural network (CBAM-CNN) is proposed for discerning SSVEP-BCI tasks. This method extracts multi-subfrequency bands SSVEP signals as the initial input of the network model, and then carries out feature fusion on all feature inputs. In addition, CBAM is embedded in both parts of the initial input and feature fusion for adaptive feature refinement. To verify the effectiveness of the proposed method, this study uses the datasets of Inner Mongolia University of Technology (IMUT) and Tsinghua University (THU) to evaluate the performance of the proposed method. The experimental results show that the highest accuracy of CBAM-CNN reaches 0.9813 percentage point (pp). Within 0.1-2 s time window, the accuracy of CBAM-CNN is 0.0201-0.5388 (pp) higher than that of CNN, CCA-CWT-SVM, CCA-SVM, CCA-GNB, FBCCA, and CCA. Especially in the short-time window range of 0.1-1 s, the performance advantage of CBAM-CNN is more significant. The maximum information transmission rate (ITR) of CBAM-CNN is 503.87 bit/min, which is 227.53 bit/min-503.41 bit/min higher than the above six EEG decoding methods. The study further results show that CBAM-CNN has potential application value in SSVEP decoding.
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Affiliation(s)
- Dongyang Lei
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China
| | - Chaoyi Dong
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China.
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China.
- Engineering Research Center of Large Energy Storage Technology, Ministry of Education, Hohhot, 010080, China.
- Inner Mongolia Academy of Science and Technology, Hohhot, 010010, China.
| | - Hongfei Guo
- Inner Mongolia Academy of Science and Technology, Hohhot, 010010, China.
| | - Pengfei Ma
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China
| | - Huanzi Liu
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China
| | - Naqin Bao
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China
| | - Hongzhuo Kang
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China
| | - Xiaoyan Chen
- College of Electric Power, Inner Mongolia University of Technology, Hohhot, 010080, China
- Intelligent Energy Technology and Equipment Engineering Research Centre of Colleges and Universities in Inner Mongolia Autonomous Region, Hohhot, 010051, China
- Engineering Research Center of Large Energy Storage Technology, Ministry of Education, Hohhot, 010080, China
- Inner Mongolia Academy of Science and Technology, Hohhot, 010010, China
| | - Yi Wu
- Inner Mongolia Academy of Science and Technology, Hohhot, 010010, China
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2
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Joo P, Kim M, Kish B, Nair VV, Tong Y, Liu Z, O'Brien ARW, Harte SE, Harris RE, Lee U, Wang Y. Brain network hypersensitivity underlies pain crises in sickle cell disease. Sci Rep 2024; 14:7315. [PMID: 38538687 PMCID: PMC10973361 DOI: 10.1038/s41598-024-57473-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 03/18/2024] [Indexed: 04/04/2024] Open
Abstract
Sickle cell disease (SCD) is a genetic disorder causing painful and unpredictable Vaso-occlusive crises (VOCs) through blood vessel blockages. In this study, we propose explosive synchronization (ES) as a novel approach to comprehend the hypersensitivity and occurrence of VOCs in the SCD brain network. We hypothesized that the accumulated disruptions in the brain network induced by SCD might lead to strengthened ES and hypersensitivity. We explored ES's relationship with patient reported outcome measures (PROMs) as well as VOCs by analyzing EEG data from 25 SCD patients and 18 matched controls. SCD patients exhibited lower alpha frequency than controls. SCD patients showed correlation between frequency disassortativity (FDA), an ES condition, and three important PROMs. Furthermore, stronger FDA was observed in SCD patients with a higher frequency of VOCs and EEG recording near VOC. We also conducted computational modeling on SCD brain network to study FDA's role in network sensitivity. Our model demonstrated that a stronger FDA could be linked to increased sensitivity and frequency of VOCs. This study establishes connections between SCD pain and the universal network mechanism, ES, offering a strong theoretical foundation. This understanding will aid predicting VOCs and refining pain management for SCD patients.
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Affiliation(s)
- Pangyu Joo
- Department of Anesthesiology, Center for Consciousness Science, Center for the Study of Complex Systems, Michigan Psychedelic Center, University of Michigan, Arbor Lakes Building 1 Suite 2200, 4251 Plymouth Road, Ann Arbor, MI, 48105, USA
| | - Minkyung Kim
- Department of Anesthesiology, Center for Consciousness Science, Center for the Study of Complex Systems, Michigan Psychedelic Center, University of Michigan, Arbor Lakes Building 1 Suite 2200, 4251 Plymouth Road, Ann Arbor, MI, 48105, USA
| | - Brianna Kish
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA
| | | | - Yunjie Tong
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA
| | - Ziyue Liu
- Indiana Center for Musculoskeletal Health, Indiana University, Indianapolis, IN, USA
- Department of Biostatistics, Indiana University School of Medicine, Indianapolis, IN, USA
| | - Andrew R W O'Brien
- Division of Hematology/Oncology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA
| | - Steven E Harte
- Department of Anesthesiology, Chronic Pain and Fatigue Research Center, University of Michigan, Ann Arbor, MI, USA
| | - Richard E Harris
- Department of Anesthesiology, Chronic Pain and Fatigue Research Center, University of Michigan, Ann Arbor, MI, USA
- Susan Samueli Integrative Health Institute, and Department of Anesthesiology and Perioperative Care, School of Medicine, University of California at Irvine, Irvine, CA, USA
| | - UnCheol Lee
- Department of Anesthesiology, Center for Consciousness Science, Center for the Study of Complex Systems, Michigan Psychedelic Center, University of Michigan, Arbor Lakes Building 1 Suite 2200, 4251 Plymouth Road, Ann Arbor, MI, 48105, USA.
| | - Ying Wang
- Division of Hematology/Oncology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
- Department of Anesthesia, Stark Neurosciences Research Institute, Indiana University School of Medicine, Stark Neuroscience Building, Rm# 514E, 320 West 15th Street, Indianapolis, IN, 46202, USA.
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3
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Sourav S, Kekunnaya R, Bottari D, Shareef I, Pitchaimuthu K, Röder B. Sound suppresses earliest visual cortical processing after sight recovery in congenitally blind humans. Commun Biol 2024; 7:118. [PMID: 38253781 PMCID: PMC10803735 DOI: 10.1038/s42003-023-05749-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 12/28/2023] [Indexed: 01/24/2024] Open
Abstract
Neuroscientific research has consistently shown more extensive non-visual activity in the visual cortex of congenitally blind humans compared to sighted controls; a phenomenon known as crossmodal plasticity. Whether or not crossmodal activation of the visual cortex retracts if sight can be restored is still unknown. The present study, involving a rare group of sight-recovery individuals who were born pattern vision blind, employed visual event-related potentials to investigate persisting crossmodal modulation of the initial visual cortical processing stages. Here we report that the earliest, stimulus-driven retinotopic visual cortical activity (<100 ms) was suppressed in a spatially specific manner in sight-recovery individuals when concomitant sounds accompanied visual stimulation. In contrast, sounds did not modulate the earliest visual cortical response in two groups of typically sighted controls, nor in a third control group of sight-recovery individuals who had suffered a transient phase of later (rather than congenital) visual impairment. These results provide strong evidence for persisting crossmodal activity in the visual cortex after sight recovery following a period of congenital visual deprivation. Based on the time course of this modulation, we speculate on a role of exuberant crossmodal thalamic input which may arise during a sensitive phase of brain development.
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Affiliation(s)
- Suddha Sourav
- Biological Psychology and Neuropsychology, University of Hamburg, Hamburg, Germany.
| | - Ramesh Kekunnaya
- Jasti V Ramanamma Children's Eye Care Center, Child Sight Institute, L V Prasad Eye Institute, Hyderabad, India
| | - Davide Bottari
- Biological Psychology and Neuropsychology, University of Hamburg, Hamburg, Germany
- IMT School for Advanced Studies Lucca, Lucca, Italy
| | - Idris Shareef
- Jasti V Ramanamma Children's Eye Care Center, Child Sight Institute, L V Prasad Eye Institute, Hyderabad, India
| | - Kabilan Pitchaimuthu
- Biological Psychology and Neuropsychology, University of Hamburg, Hamburg, Germany
- Jasti V Ramanamma Children's Eye Care Center, Child Sight Institute, L V Prasad Eye Institute, Hyderabad, India
- Department of Medicine and Optometry, Linnaeus University, Kalmar, Sweden
| | - Brigitte Röder
- Biological Psychology and Neuropsychology, University of Hamburg, Hamburg, Germany
- Jasti V Ramanamma Children's Eye Care Center, Child Sight Institute, L V Prasad Eye Institute, Hyderabad, India
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4
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Mu J, Liu S, Burkitt AN, Grayden DB. Multi-frequency steady-state visual evoked potential dataset. Sci Data 2024; 11:26. [PMID: 38177151 PMCID: PMC10766626 DOI: 10.1038/s41597-023-02841-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 12/11/2023] [Indexed: 01/06/2024] Open
Abstract
The Steady-State Visual Evoked Potential (SSVEP) is a widely used modality in Brain-Computer Interfaces (BCIs). Existing research has demonstrated the capabilities of SSVEP that use single frequencies for each target in various applications with relatively small numbers of commands required in the BCI. Multi-frequency SSVEP has been developed to extend the capability of single-frequency SSVEP to tasks that involve large numbers of commands. However, the development on multi-frequency SSVEP methodologies is falling behind compared to the number of studies with single-frequency SSVEP. This dataset was constructed to promote research in multi-frequency SSVEP by making SSVEP signals collected with different frequency stimulation settings publicly available. In this dataset, SSVEPs were collected from 35 participants using single-, dual-, and tri-frequency stimulation and with three different multi-frequency stimulation variants.
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Affiliation(s)
- Jing Mu
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, 3010, Australia.
- Graeme Clark Institute, The University of Melbourne, Parkville, Victoria, 3010, Australia.
| | - Shuo Liu
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Anthony N Burkitt
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - David B Grayden
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, 3010, Australia
- Graeme Clark Institute, The University of Melbourne, Parkville, Victoria, 3010, Australia
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5
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Ross JM, Cline CC, Sarkar M, Truong J, Keller CJ. Neural effects of TMS trains on the human prefrontal cortex. Sci Rep 2023; 13:22700. [PMID: 38123591 PMCID: PMC10733322 DOI: 10.1038/s41598-023-49250-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 12/06/2023] [Indexed: 12/23/2023] Open
Abstract
How does a train of TMS pulses modify neural activity in humans? Despite adoption of repetitive TMS (rTMS) for the treatment of neuropsychiatric disorders, we still do not understand how rTMS changes the human brain. This limited understanding stems in part from a lack of methods for noninvasively measuring the neural effects of a single TMS train-a fundamental building block of treatment-as well as the cumulative effects of consecutive TMS trains. Gaining this understanding would provide foundational knowledge to guide the next generation of treatments. Here, to overcome this limitation, we developed methods to noninvasively measure causal and acute changes in cortical excitability and evaluated this neural response to single and sequential TMS trains. In 16 healthy adults, standard 10 Hz trains were applied to the dorsolateral prefrontal cortex in a randomized, sham-controlled, event-related design and changes were assessed based on the TMS-evoked potential (TEP), a measure of cortical excitability. We hypothesized that single TMS trains would induce changes in the local TEP amplitude and that those changes would accumulate across sequential trains, but primary analyses did not indicate evidence in support of either of these hypotheses. Exploratory analyses demonstrated non-local neural changes in sensor and source space and local neural changes in phase and source space. Together these results suggest that single and sequential TMS trains may not be sufficient to modulate local cortical excitability indexed by typical TEP amplitude metrics but may cause neural changes that can be detected outside the stimulation area or using phase or source space metrics. This work should be contextualized as methods development for the monitoring of transient noninvasive neural changes during rTMS and contributes to a growing understanding of the neural effects of rTMS.
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Affiliation(s)
- Jessica M Ross
- Department of Psychiatry and Behavioral Sciences, Stanford University Medical Center, 401 Quarry Road, Stanford, CA, 94305-5797, USA
- Veterans Affairs Palo Alto Healthcare System, and the Sierra Pacific Mental Illness, Research, Education, and Clinical Center (MIRECC), 3801 Miranda Avenue, Palo Alto, CA, 94304, USA
- Wu Tsai Neuroscience Institute, Stanford University, Stanford, CA, USA
| | - Christopher C Cline
- Department of Psychiatry and Behavioral Sciences, Stanford University Medical Center, 401 Quarry Road, Stanford, CA, 94305-5797, USA
- Wu Tsai Neuroscience Institute, Stanford University, Stanford, CA, USA
| | - Manjima Sarkar
- Department of Psychiatry and Behavioral Sciences, Stanford University Medical Center, 401 Quarry Road, Stanford, CA, 94305-5797, USA
- Wu Tsai Neuroscience Institute, Stanford University, Stanford, CA, USA
| | - Jade Truong
- Department of Psychiatry and Behavioral Sciences, Stanford University Medical Center, 401 Quarry Road, Stanford, CA, 94305-5797, USA
- Wu Tsai Neuroscience Institute, Stanford University, Stanford, CA, USA
| | - Corey J Keller
- Department of Psychiatry and Behavioral Sciences, Stanford University Medical Center, 401 Quarry Road, Stanford, CA, 94305-5797, USA.
- Veterans Affairs Palo Alto Healthcare System, and the Sierra Pacific Mental Illness, Research, Education, and Clinical Center (MIRECC), 3801 Miranda Avenue, Palo Alto, CA, 94304, USA.
- Wu Tsai Neuroscience Institute, Stanford University, Stanford, CA, USA.
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6
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Xu X, Lee D, Drougard N, Roy RN. Signature methods for brain-computer interfaces. Sci Rep 2023; 13:21367. [PMID: 38049438 PMCID: PMC10696092 DOI: 10.1038/s41598-023-41326-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 08/24/2023] [Indexed: 12/06/2023] Open
Abstract
Brain-computer interfaces (BCIs) allow direct communication between one's central nervous system and a computer without any muscle movement hence by-passing the peripheral nervous system. They can restore disabled people's ability to interact with their environment, e.g. communication and wheelchair control. However, to this day their performance is still hindered by the non-stationarity of electroencephalography (EEG) signals, as well as their susceptibility to noise from the users' environment and from their own physiological activity. Moreover, a non-negligible amount of users struggle to use BCI systems based on motor imagery. In this paper, a new method based on the path signature is introduced to tackle this problem by using features which are different from the usual power-based ones. The path signature is a series of iterated integrals computed from a multidimensional path. It is invariant under translation and time reparametrization, which makes it a robust feature for multichannel EEG time series. The performance can be further boosted by combining the path signature with the gold standard Riemannian classifier in the BCI field exploiting the geometric structure of symmetric positive definite (SPD) matrices. The results obtained on publicly available datasets show that the signature method is more robust to inter-user variability than classical ones, especially on noisy and low-quality data. Hence, this study paves the way towards the use of mathematical tools that until now have been neglected, in order to tackle the EEG-based BCI variability issue. It also sheds light on the lead-lag relationship captured by path signature which seems relevant to assess the underlying neural mechanisms.
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Affiliation(s)
- Xiaoqi Xu
- Cerco, CNRS, Université de Toulouse, Toulouse, France.
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7
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Talwar P, Deantoni M, Van Egroo M, Muto V, Chylinski D, Koshmanova E, Jaspar M, Meyer C, Degueldre C, Berthomier C, Luxen A, Salmon E, Collette F, Dijk DJ, Schmidt C, Phillips C, Maquet P, Sherif S, Vandewalle G. In vivo marker of brainstem myelin is associated to quantitative sleep parameters in healthy young men. Sci Rep 2023; 13:20873. [PMID: 38012207 PMCID: PMC10682495 DOI: 10.1038/s41598-023-47753-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 11/17/2023] [Indexed: 11/29/2023] Open
Abstract
The regional integrity of brain subcortical structures has been implicated in sleep-wake regulation, however, their associations with sleep parameters remain largely unexplored. Here, we assessed association between quantitative Magnetic Resonance Imaging (qMRI)-derived marker of the myelin content of the brainstem and the variability in the sleep electrophysiology in a large sample of 18-to-31 years healthy young men (N = 321; ~ 22 years). Separate Generalized Additive Model for Location, Scale and Shape (GAMLSS) revealed that sleep onset latency and slow wave energy were significantly associated with MTsat estimates in the brainstem (pcorrected ≤ 0.03), with overall higher MTsat value associated with values reflecting better sleep quality. The association changed with age, however (MTsat-by-age interaction-pcorrected ≤ 0.03), with higher MTsat value linked to better values in the two sleep metrics in the younger individuals of our sample aged ~ 18 to 20 years. Similar associations were detected across different parts of the brainstem (pcorrected ≤ 0.03), suggesting that the overall maturation and integrity of the brainstem was associated with both sleep metrics. Our results suggest that myelination of the brainstem nuclei essential to regulation of sleep is associated with inter-individual differences in sleep characteristics during early adulthood. They may have implications for sleep disorders or neurological diseases related to myelin.
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Affiliation(s)
- Puneet Talwar
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | - Michele Deantoni
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | - Maxime Van Egroo
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Faculty of Health, Medicine and Life Sciences, School for Mental Health and Neuroscience, Alzheimer Centre Limburg, Maastricht University, Maastricht, The Netherlands
| | - Vincenzo Muto
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Walloon Excellence in Life Sciences and Biotechnology (WELBIO), Wallonia, Belgium
- Psychology and Cognitive Neuroscience Research Unit, University of Liège, Liège, Belgium
| | - Daphne Chylinski
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | - Ekaterina Koshmanova
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | - Mathieu Jaspar
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Walloon Excellence in Life Sciences and Biotechnology (WELBIO), Wallonia, Belgium
| | - Christelle Meyer
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Walloon Excellence in Life Sciences and Biotechnology (WELBIO), Wallonia, Belgium
| | - Christian Degueldre
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | | | - André Luxen
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | - Eric Salmon
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Psychology and Cognitive Neuroscience Research Unit, University of Liège, Liège, Belgium
- Department of Neurology, CHU of Liège, Liège, Belgium
| | - Fabienne Collette
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Psychology and Cognitive Neuroscience Research Unit, University of Liège, Liège, Belgium
| | - D-J Dijk
- Sleep Research Centre, University of Surrey, Guildford, UK
- UK Dementia Research Institute, University of Surrey, Guildford, UK
| | - Christina Schmidt
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Psychology and Cognitive Neuroscience Research Unit, University of Liège, Liège, Belgium
| | - Christophe Phillips
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- In Silico Medicine Unit, GIGA-Institute, University of Liège, Liège, Belgium
| | - Pierre Maquet
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
- Walloon Excellence in Life Sciences and Biotechnology (WELBIO), Wallonia, Belgium
- Department of Neurology, CHU of Liège, Liège, Belgium
| | - Siya Sherif
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium
| | - Gilles Vandewalle
- GIGA-Institute, CRC-In Vivo Imaging Unit, Bâtiment B30, Université de Liège, 4000, Liège, Belgium.
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8
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Rodionov A, Ozdemir RA, Benwell CSY, Fried PJ, Boucher P, Momi D, Ross JM, Santarnecchi E, Pascual-Leone A, Shafi MM. Reliability of resting-state EEG modulation by continuous and intermittent theta burst stimulation of the primary motor cortex: a sham-controlled study. Sci Rep 2023; 13:18898. [PMID: 37919322 PMCID: PMC10622440 DOI: 10.1038/s41598-023-45512-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 10/20/2023] [Indexed: 11/04/2023] Open
Abstract
Theta burst stimulation (TBS) is a form of repetitive transcranial magnetic stimulation designed to induce changes of cortical excitability that outlast the period of TBS application. In this study, we explored the effects of continuous TBS (cTBS) and intermittent TBS (iTBS) versus sham TBS stimulation, applied to the left primary motor cortex, on modulation of resting state electroencephalography (rsEEG) power. We first conducted hypothesis-driven region-of-interest (ROI) analyses examining changes in alpha (8-12 Hz) and beta (13-21 Hz) bands over the left and right motor cortex. Additionally, we performed data-driven whole-brain analyses across a wide range of frequencies (1-50 Hz) and all electrodes. Finally, we assessed the reliability of TBS effects across two sessions approximately 1 month apart. None of the protocols produced significant group-level effects in the ROI. Whole-brain analysis revealed that cTBS significantly enhanced relative power between 19 and 43 Hz over multiple sites in both hemispheres. However, these results were not reliable across visits. There were no significant differences between EEG modulation by active and sham TBS protocols. Between-visit reliability of TBS-induced neuromodulatory effects was generally low-to-moderate. We discuss confounding factors and potential approaches for improving the reliability of TBS-induced rsEEG modulation.
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Affiliation(s)
- Andrei Rodionov
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Department of Neurology, Harvard Medical School, Boston, MA, USA
| | - Recep A Ozdemir
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Department of Neurology, Harvard Medical School, Boston, MA, USA
| | - Christopher S Y Benwell
- Division of Psychology, School of Humanities, Social Sciences and Law, University of Dundee, Dundee, UK
| | - Peter J Fried
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Department of Neurology, Harvard Medical School, Boston, MA, USA
| | - Pierre Boucher
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Davide Momi
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Department of Neurology, Harvard Medical School, Boston, MA, USA
- Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, Canada
| | - Jessica M Ross
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Department of Neurology, Harvard Medical School, Boston, MA, USA
- Research, Education, and Clinical Center, Veterans Affairs Palo Alto Healthcare System, and the Sierra Pacific Mental Illness, Palo Alto, CA, USA
- Department of Psychiatry and Behavioral Sciences, Stanford Medical School, Stanford, CA, USA
| | - Emiliano Santarnecchi
- Department of Neurology, Harvard Medical School, Boston, MA, USA
- Precision Neuroscience and Neuromodulation Program, Gordon Center for Medical Imaging, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
| | - Alvaro Pascual-Leone
- Department of Neurology, Harvard Medical School, Boston, MA, USA
- Deanna and Sidney Wolk Center for Memory Health, Hebrew Senior Life, Hinda and Arthur Marcus Institute for Aging Research, Boston, MA, USA
| | - Mouhsin M Shafi
- Berenson-Allen Center for Noninvasive Brain Stimulation, Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.
- Department of Neurology, Harvard Medical School, Boston, MA, USA.
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9
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Sujatha Ravindran A, Contreras-Vidal J. An empirical comparison of deep learning explainability approaches for EEG using simulated ground truth. Sci Rep 2023; 13:17709. [PMID: 37853010 PMCID: PMC10584975 DOI: 10.1038/s41598-023-43871-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 09/29/2023] [Indexed: 10/20/2023] Open
Abstract
Recent advancements in machine learning and deep learning (DL) based neural decoders have significantly improved decoding capabilities using scalp electroencephalography (EEG). However, the interpretability of DL models remains an under-explored area. In this study, we compared multiple model explanation methods to identify the most suitable method for EEG and understand when some of these approaches might fail. A simulation framework was developed to evaluate the robustness and sensitivity of twelve back-propagation-based visualization methods by comparing to ground truth features. Multiple methods tested here showed reliability issues after randomizing either model weights or labels: e.g., the saliency approach, which is the most used visualization technique in EEG, was not class or model-specific. We found that DeepLift was consistently accurate as well as robust to detect the three key attributes tested here (temporal, spatial, and spectral precision). Overall, this study provides a review of model explanation methods for DL-based neural decoders and recommendations to understand when some of these methods fail and what they can capture in EEG.
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Affiliation(s)
- Akshay Sujatha Ravindran
- Noninvasive Brain-Machine Interface System Laboratory, Department of Electrical and Computer Engineering, University of Houston, Houston, 77204, USA.
- IUCRC BRAIN, University of Houston, Houston, 77204, USA.
- Alto Neuroscience, Los Altos, CA, 94022, USA.
| | - Jose Contreras-Vidal
- Noninvasive Brain-Machine Interface System Laboratory, Department of Electrical and Computer Engineering, University of Houston, Houston, 77204, USA
- IUCRC BRAIN, University of Houston, Houston, 77204, USA
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10
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Lee HT, Cheon HR, Lee SH, Shim M, Hwang HJ. Risk of data leakage in estimating the diagnostic performance of a deep-learning-based computer-aided system for psychiatric disorders. Sci Rep 2023; 13:16633. [PMID: 37789047 PMCID: PMC10547830 DOI: 10.1038/s41598-023-43542-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 09/25/2023] [Indexed: 10/05/2023] Open
Abstract
Deep-learning approaches with data augmentation have been widely used when developing neuroimaging-based computer-aided diagnosis (CAD) systems. To prevent the inflated diagnostic performance caused by data leakage, a correct cross-validation (CV) method should be employed, but this has been still overlooked in recent deep-learning-based CAD studies. The goal of this study was to investigate the impact of correct and incorrect CV methods on the diagnostic performance of deep-learning-based CAD systems after data augmentation. To this end, resting-state electroencephalogram (EEG) data recorded from post-traumatic stress disorder patients and healthy controls were augmented using a cropping method with different window sizes, respectively. Four different CV approaches were used to estimate the diagnostic performance of the CAD system, i.e., subject-wise CV (sCV), overlapped sCV (oSCV), trial-wise CV (tCV), and overlapped tCV (otCV). Diagnostic performances were evaluated using two deep-learning models based on convolutional neural network. Data augmentation can increase the performance with all CVs, but inflated diagnostic performances were observed when using incorrect CVs (tCV and otCV) due to data leakage. Therefore, the correct CV (sCV and osCV) should be used to develop a deep-learning-based CAD system. We expect that our investigation can provide deep-insight for researchers who plan to develop neuroimaging-based CAD systems for psychiatric disorders using deep-learning algorithms with data augmentation.
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Affiliation(s)
- Hyung-Tak Lee
- Department of Electronics and Information Engineering, Korea University, Sejong, Republic of Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong, Republic of Korea
| | - Hye-Ran Cheon
- Department of Electronics and Information Engineering, Korea University, Sejong, Republic of Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong, Republic of Korea
| | - Seung-Hwan Lee
- Psychiatry Department, Ilsan Paik Hospital, Inje University, Goyang, Republic of Korea
- Clinical Emotion and Cognition Research Laboratory, Goyang, Republic of Korea
| | - Miseon Shim
- Department of Artificial Intelligence, Tech University of Korea, Siheung, Republic of Korea.
| | - Han-Jeong Hwang
- Department of Electronics and Information Engineering, Korea University, Sejong, Republic of Korea.
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong, Republic of Korea.
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11
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Telesford QK, Gonzalez-Moreira E, Xu T, Tian Y, Colcombe SJ, Cloud J, Russ BE, Falchier A, Nentwich M, Madsen J, Parra LC, Schroeder CE, Milham MP, Franco AR. An open-access dataset of naturalistic viewing using simultaneous EEG-fMRI. Sci Data 2023; 10:554. [PMID: 37612297 PMCID: PMC10447527 DOI: 10.1038/s41597-023-02458-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 08/09/2023] [Indexed: 08/25/2023] Open
Abstract
In this work, we present a dataset that combines functional magnetic imaging (fMRI) and electroencephalography (EEG) to use as a resource for understanding human brain function in these two imaging modalities. The dataset can also be used for optimizing preprocessing methods for simultaneously collected imaging data. The dataset includes simultaneously collected recordings from 22 individuals (ages: 23-51) across various visual and naturalistic stimuli. In addition, physiological, eye tracking, electrocardiography, and cognitive and behavioral data were collected along with this neuroimaging data. Visual tasks include a flickering checkerboard collected outside and inside the MRI scanner (EEG-only) and simultaneous EEG-fMRI recordings. Simultaneous recordings include rest, the visual paradigm Inscapes, and several short video movies representing naturalistic stimuli. Raw and preprocessed data are openly available to download. We present this dataset as part of an effort to provide open-access data to increase the opportunity for discoveries and understanding of the human brain and evaluate the correlation between electrical brain activity and blood oxygen level-dependent (BOLD) signals.
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Affiliation(s)
- Qawi K Telesford
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | - Eduardo Gonzalez-Moreira
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | - Ting Xu
- Center for the Developing Brain, Child Mind Institute, New York, NY, USA
| | - Yiwen Tian
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | - Stanley J Colcombe
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
- Department of Psychiatry, New York University Grossman School of Medicine, New York, NY, USA
| | - Jessica Cloud
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | - Brian E Russ
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | - Arnaud Falchier
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
| | - Maximilian Nentwich
- Department of Biomedical Engineering, The City College of the City University of New York, New York, NY, USA
| | - Jens Madsen
- Department of Biomedical Engineering, The City College of the City University of New York, New York, NY, USA
| | - Lucas C Parra
- Department of Biomedical Engineering, The City College of the City University of New York, New York, NY, USA
| | - Charles E Schroeder
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
- Departments of Psychiatry and Neurology, Columbia University College of Physicians and Surgeons, New York, NY, USA
| | - Michael P Milham
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA
- Center for the Developing Brain, Child Mind Institute, New York, NY, USA
| | - Alexandre R Franco
- Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.
- Center for the Developing Brain, Child Mind Institute, New York, NY, USA.
- Department of Psychiatry, New York University Grossman School of Medicine, New York, NY, USA.
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12
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Huang Y, Wei PH, Xu L, Chen D, Yang Y, Song W, Yi Y, Jia X, Wu G, Fan Q, Cui Z, Zhao G. Intracranial electrophysiological and structural basis of BOLD functional connectivity in human brain white matter. Nat Commun 2023; 14:3414. [PMID: 37296147 PMCID: PMC10256794 DOI: 10.1038/s41467-023-39067-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 05/25/2023] [Indexed: 06/12/2023] Open
Abstract
While functional MRI (fMRI) studies have mainly focused on gray matter, recent studies have consistently found that blood-oxygenation-level-dependent (BOLD) signals can be reliably detected in white matter, and functional connectivity (FC) has been organized into distributed networks in white matter. Nevertheless, it remains unclear whether this white matter FC reflects underlying electrophysiological synchronization. To address this question, we employ intracranial stereotactic-electroencephalography (SEEG) and resting-state fMRI data from a group of 16 patients with drug-resistant epilepsy. We find that BOLD FC is correlated with SEEG FC in white matter, and this result is consistent across a wide range of frequency bands for each participant. By including diffusion spectrum imaging data, we also find that white matter FC from both SEEG and fMRI are correlated with white matter structural connectivity, suggesting that anatomical fiber tracts underlie the functional synchronization in white matter. These results provide evidence for the electrophysiological and structural basis of white matter BOLD FC, which could be a potential biomarker for psychiatric and neurological disorders.
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Affiliation(s)
- Yali Huang
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Peng-Hu Wei
- Department of Neurosurgery, Xuanwu Hospital Capital Medical University, Beijing, 100053, China
| | - Longzhou Xu
- Chinese Institute for Brain Research, Beijing, 102206, China
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, 100875, China
| | - Desheng Chen
- Department of Neurosurgery, Xuanwu Hospital Capital Medical University, Beijing, 100053, China
| | - Yanfeng Yang
- Department of Neurosurgery, Xuanwu Hospital Capital Medical University, Beijing, 100053, China
| | - Wenkai Song
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Yangyang Yi
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Xiaoli Jia
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Guowei Wu
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Qingchen Fan
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Zaixu Cui
- Chinese Institute for Brain Research, Beijing, 102206, China.
| | - Guoguang Zhao
- Department of Neurosurgery, Xuanwu Hospital Capital Medical University, Beijing, 100053, China.
- National Medical Center for Neurological Diseases, Beijing, 100053, China.
- Beijing Municipal Geriatric Medical Research Center, Beijing, 100053, China.
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13
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Zhuravlev M, Agaltsov M, Kiselev A, Simonyan M, Novikov M, Selskii A, Ukolov R, Drapkina O, Orlova A, Penzel T, Runnova A. Compensatory mechanisms of reduced interhemispheric EEG connectivity during sleep in patients with apnea. Sci Rep 2023; 13:8444. [PMID: 37231107 PMCID: PMC10213009 DOI: 10.1038/s41598-023-35376-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 05/17/2023] [Indexed: 05/27/2023] Open
Abstract
We performed a mathematical analysis of functional connectivity in electroencephalography (EEG) of patients with obstructive sleep apnea (OSA) (N = 10; age: 52.8 ± 13 years; median age: 49 years; male/female ratio: 7/3), compared with a group of apparently healthy participants (N = 15; age: 51.5 ± 29.5 years; median age: 42 years; male/female ratio: 8/7), based on the calculation of wavelet bicoherence from nighttime polysomnograms. Having observed the previously known phenomenon of interhemispheric synchronization deterioration, we demonstrated a compensatory increase in intrahemispheric connectivity, as well as a slight increase in the connectivity of the central and occipital areas for high-frequency EEG activity. Significant changes in functional connectivity were extremely stable in groups of apparently healthy participants and OSA patients, maintaining the overall pattern when comparing different recording nights and various sleep stages. The maximum variability of the connectivity was observed at fast oscillatory processes during REM sleep. The possibility of observing some changes in functional connectivity of brain activity in OSA patients in a state of passive wakefulness opens up prospects for further research. Developing the methods of hypnogram evaluation that are independent of functional connectivity may be useful for implementing a medical decision support system.
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Affiliation(s)
- Maksim Zhuravlev
- National Medical Research Center for Therapy and Preventive Medicine, Moscow, Russia
- Institute of Physics, Saratov State University, Saratov, Russia
| | - Mikhail Agaltsov
- National Medical Research Center for Therapy and Preventive Medicine, Moscow, Russia
| | - Anton Kiselev
- National Medical Research Center for Therapy and Preventive Medicine, Moscow, Russia
| | - Margarita Simonyan
- Institute of Physics, Saratov State University, Saratov, Russia
- Institute of Cardiology Research, Saratov State Medical University, Saratov, Russia
| | - Mikhail Novikov
- Institute of Cardiology Research, Saratov State Medical University, Saratov, Russia
| | - Anton Selskii
- Institute of Physics, Saratov State University, Saratov, Russia
| | - Rodion Ukolov
- Institute of Physics, Saratov State University, Saratov, Russia
| | - Oksana Drapkina
- National Medical Research Center for Therapy and Preventive Medicine, Moscow, Russia
| | - Anna Orlova
- National Medical Research Center for Therapy and Preventive Medicine, Moscow, Russia
| | - Thomas Penzel
- Interdisciplinary Sleep Medicine Center, Charité-Universitätsmedizin Berlin, Berlin, Germany
| | - Anastasiya Runnova
- National Medical Research Center for Therapy and Preventive Medicine, Moscow, Russia.
- Institute of Physics, Saratov State University, Saratov, Russia.
- Institute of Cardiology Research, Saratov State Medical University, Saratov, Russia.
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14
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Lee S, Deshpande SS, Merricks EM, Schlafly E, Goodman R, McKhann GM, Eskandar EN, Madsen JR, Cash SS, van Putten MJAM, Schevon CA, van Drongelen W. Spatiotemporal spike-centered averaging reveals symmetry of temporal and spatial components of the spike-LFP relationship during human focal seizures. Commun Biol 2023; 6:317. [PMID: 36966217 PMCID: PMC10039941 DOI: 10.1038/s42003-023-04696-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 03/10/2023] [Indexed: 03/27/2023] Open
Abstract
The electrographic manifestation of neural activity can reflect the relationship between the faster action potentials of individual neurons and the slower fluctuations of the local field potential (LFP). This relationship is typically examined in the temporal domain using the spike-triggered average. In this study, we add a spatial component to this relationship. Here we first derive a theoretical model of the spike-LFP relationship across a macroelectrode. This mathematical derivation showed a special symmetry in the spike-LFP relationship wherein a sinc function in the temporal domain predicts a sinc function in the spatial domain. We show that this theoretical result is observed in a real-world system by characterizing the spike-LFP relationship using microelectrode array (MEA) recordings of human focal seizures. To do this, we present a approach, termed the spatiotemporal spike-centered average (st-SCA), that allows for visualization of the spike-LFP relationship in both the temporal and spatial domains. We applied this method to 25 MEA recordings obtained from seven patients with pharmacoresistant focal epilepsy. Of the five patients with MEAs implanted in recruited territory, three exhibited spatiotemporal patterns consistent with a sinc function, and two exhibited spatiotemporal patterns resembling deep wells of excitation. These results suggest that in some cases characterization of the spike-LFP relationship in the temporal domain is sufficient to predict the underlying spatial pattern. Finally, we discuss the biological interpretation of these findings and propose that the sinc function may reflect the role of mid-range excitatory connections during seizure activity.
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Affiliation(s)
- Somin Lee
- Department of Pediatrics, University of Chicago, Chicago, IL, 60637, USA
- Medical Scientist Training Program, University of Chicago, Chicago, IL, 60637, USA
| | - Sarita S Deshpande
- Department of Pediatrics, University of Chicago, Chicago, IL, 60637, USA
- Medical Scientist Training Program, University of Chicago, Chicago, IL, 60637, USA
| | - Edward M Merricks
- Department of Neurology, Columbia University, New York, NY, 10032, USA
| | - Emily Schlafly
- Graduate Program in Neuroscience, Boston University, Boston, MA, 02215, USA
| | - Robert Goodman
- Department of Neurosurgery, Lenox Hill Hospital, New York, NY, 10075, USA
| | - Guy M McKhann
- Department of Neurological Surgery, Columbia University, New York, NY, 10032, USA
| | - Emad N Eskandar
- Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
- Nayef Al-Rodhan Laboratories for Cellular Neurosurgery and Neurosurgical Technology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
| | - Joseph R Madsen
- Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
- Department of Neurosurgery, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA
| | - Sydney S Cash
- Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
| | - Michel J A M van Putten
- Clinical Neurophysiology Group, MIRA Institute for Biomedical Engineering and Technical Medicine, University of Twente, 7500AE, Enschede, The Netherlands
| | | | - Wim van Drongelen
- Department of Pediatrics, University of Chicago, Chicago, IL, 60637, USA.
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15
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Byeon J, Moon JY, Je SR, Park SH, Kim JW. Quantitative electroencephalographic biomarker of pharmacological treatment response in patients with anxiety disorder: a retrospective study. Sci Rep 2023; 13:3802. [PMID: 36882629 DOI: 10.1038/s41598-023-30994-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 03/06/2023] [Indexed: 03/09/2023] Open
Abstract
This study aimed to investigate the effectiveness of a quantitative electroencephalography (qEEG) biomarker in predicting the response to pharmacological treatment in patients with anxiety disorder. A total of 86 patients were diagnosed with anxiety disorder according to the Diagnostic and Statistical Manual of Mental Disorders 5th edition, and subsequently treated with antidepressants. After 8-12 weeks, the participants were divided into treatment-resistant (TRS) and treatment-response (TRP) groups based on their Clinical Global Impressions-Severity (CGI-S) scores. We obtained the absolute-EEG measurements for 19-channels and analyzed qEEG findings according to the frequency range: delta, theta, alpha, and beta. The beta-wave was subdivided into low-beta, beta, and high-beta waves. The theta-beta ratio (TBR) was calculated, and an analysis of covariance was performed. Of the 86 patients with anxiety disorder, 56 patients (65%) were classified in the TRS group. The TRS and TRP groups did not differ in terms of age, sex, or medication-dosage. However, the baseline CGI-S was higher in the TRP group. After calibration by covariates, the TRP group showed higher beta-waves in T3 and T4, and a lower TBR, especially in T3 and T4, than the TRS group. These results indicate that patients with a lower TBR and higher beta and high-beta waves in T3 and T4 are more likely to respond to medication.
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16
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Jaiswal A, Nenonen J, Parkkonen L. On electromagnetic head digitization in MEG and EEG. Sci Rep 2023; 13:3801. [PMID: 36882438 PMCID: PMC9992397 DOI: 10.1038/s41598-023-30223-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 02/17/2023] [Indexed: 03/09/2023] Open
Abstract
In MEG and EEG studies, the accuracy of the head digitization impacts the co-registration between functional and structural data. The co-registration is one of the major factors that affect the spatial accuracy in MEG/EEG source imaging. Precisely digitized head-surface (scalp) points do not only improve the co-registration but can also deform a template MRI. Such an individualized-template MRI can be used for conductivity modeling in MEG/EEG source imaging if the individual's structural MRI is unavailable. Electromagnetic tracking (EMT) systems (particularly Fastrak, Polhemus Inc., Colchester, VT, USA) have been the most common solution for digitization in MEG and EEG. However, they may occasionally suffer from ambient electromagnetic interference which makes it challenging to achieve (sub-)millimeter digitization accuracy. The current study-(i) evaluated the performance of the Fastrak EMT system under different conditions in MEG/EEG digitization, and (ii) explores the usability of two alternative EMT systems (Aurora, NDI, Waterloo, ON, Canada; Fastrak with a short-range transmitter) for digitization. Tracking fluctuation, digitization accuracy, and robustness of the systems were evaluated in several test cases using test frames and human head models. The performance of the two alternative systems was compared against the Fastrak system. The results showed that the Fastrak system is accurate and robust for MEG/EEG digitization if the recommended operating conditions are met. The Fastrak with the short-range transmitter shows comparatively higher digitization error if digitization is not carried out very close to the transmitter. The study also evinces that the Aurora system can be used for MEG/EEG digitization within a constrained range; however, some modifications would be required to make the system a practical and easy-to-use digitizer. Its real-time error estimation feature can potentially improve digitization accuracy.
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Affiliation(s)
- Amit Jaiswal
- MEGIN Oy, Espoo, Finland. .,Department of Neuroscience and Biomedical Engineering, School of Science, Aalto University, Espoo, Finland.
| | | | - Lauri Parkkonen
- MEGIN Oy, Espoo, Finland.,Department of Neuroscience and Biomedical Engineering, School of Science, Aalto University, Espoo, Finland
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17
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Taheri Gorji H, Wilson N, VanBree J, Hoffmann B, Petros T, Tavakolian K. Using machine learning methods and EEG to discriminate aircraft pilot cognitive workload during flight. Sci Rep 2023; 13:2507. [PMID: 36782004 PMCID: PMC9925430 DOI: 10.1038/s41598-023-29647-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 02/08/2023] [Indexed: 02/15/2023] Open
Abstract
Pilots of aircraft face varying degrees of cognitive workload even during normal flight operations. Periods of low cognitive workload may be followed by periods of high cognitive workload and vice versa. During such changing demands, there exists potential for increased error on behalf of the pilots due to periods of boredom or excessive cognitive task demand. To further understand cognitive workload in aviation, the present study involved collection of electroencephalogram (EEG) data from ten (10) collegiate aviation students in a live-flight environment in a single-engine aircraft. Each pilot possessed a Federal Aviation Administration (FAA) commercial pilot certificate and either FAA class I or class II medical certificate. Each pilot flew a standardized flight profile representing an average instrument flight training sequence. For data analysis, we used four main sub-bands of the recorded EEG signals: delta, theta, alpha, and beta. Power spectral density (PSD) and log energy entropy of each sub-band across 20 electrodes were computed and subjected to two feature selection algorithms (recursive feature elimination (RFE) and lasso cross-validation (LassoCV), and a stacking ensemble machine learning algorithm composed of support vector machine, random forest, and logistic regression. Also, hyperparameter optimization and tenfold cross-validation were used to improve the model performance, reliability, and generalization. The feature selection step resulted in 15 features that can be considered an indicator of pilots' cognitive workload states. Then these features were applied to the stacking ensemble algorithm, and the highest results were achieved using the selected features by the RFE algorithm with an accuracy of 91.67% (± 0.11), a precision of 93.89% (± 0.09), recall of 91.67% (± 0.11), F-score of 91.22% (± 0.12), and the mean ROC-AUC of 0.93 (± 0.06). The achieved results indicated that the combination of PSD and log energy entropy, along with well-designed machine learning algorithms, suggest the potential for the use of EEG to discriminate periods of the low, medium, and high workload to augment aircraft system design, including flight automation features to improve aviation safety.
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Affiliation(s)
- Hamed Taheri Gorji
- Biomedical Engineering Program, University of North Dakota, Grand Forks, ND, USA.
| | - Nicholas Wilson
- Departments of Aviation, University of North Dakota, Grand Forks, ND, USA
| | - Jessica VanBree
- Department of Psychology, University of North Dakota, Grand Forks, ND, USA
| | - Bradley Hoffmann
- Biomedical Engineering Program, University of North Dakota, Grand Forks, ND, USA
| | - Thomas Petros
- Department of Psychology, University of North Dakota, Grand Forks, ND, USA
| | - Kouhyar Tavakolian
- Biomedical Engineering Program, University of North Dakota, Grand Forks, ND, USA
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18
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Accou B, Vanthornhout J, Hamme HV, Francart T. Decoding of the speech envelope from EEG using the VLAAI deep neural network. Sci Rep 2023; 13:812. [PMID: 36646740 PMCID: PMC9842721 DOI: 10.1038/s41598-022-27332-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 12/30/2022] [Indexed: 01/18/2023] Open
Abstract
To investigate the processing of speech in the brain, commonly simple linear models are used to establish a relationship between brain signals and speech features. However, these linear models are ill-equipped to model a highly-dynamic, complex non-linear system like the brain, and they often require a substantial amount of subject-specific training data. This work introduces a novel speech decoder architecture: the Very Large Augmented Auditory Inference (VLAAI) network. The VLAAI network outperformed state-of-the-art subject-independent models (median Pearson correlation of 0.19, p < 0.001), yielding an increase over the well-established linear model by 52%. Using ablation techniques, we identified the relative importance of each part of the VLAAI network and found that the non-linear components and output context module influenced model performance the most (10% relative performance increase). Subsequently, the VLAAI network was evaluated on a holdout dataset of 26 subjects and a publicly available unseen dataset to test generalization for unseen subjects and stimuli. No significant difference was found between the default test and the holdout subjects, and between the default test set and the public dataset. The VLAAI network also significantly outperformed all baseline models on the public dataset. We evaluated the effect of training set size by training the VLAAI network on data from 1 up to 80 subjects and evaluated on 26 holdout subjects, revealing a relationship following a hyperbolic tangent function between the number of subjects in the training set and the performance on unseen subjects. Finally, the subject-independent VLAAI network was finetuned for 26 holdout subjects to obtain subject-specific VLAAI models. With 5 minutes of data or more, a significant performance improvement was found, up to 34% (from 0.18 to 0.25 median Pearson correlation) with regards to the subject-independent VLAAI network.
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Affiliation(s)
- Bernd Accou
- ExpORL, Department of Neurosciences, KU Leuven, Leuven, Belgium. .,PSI, Department of Electrical Engineering, KU Leuven, Leuven, Belgium.
| | | | - Hugo Van Hamme
- PSI, Department of Electrical Engineering, KU Leuven, Leuven, Belgium
| | - Tom Francart
- ExpORL, Department of Neurosciences, KU Leuven, Leuven, Belgium.
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19
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Li Z, Hwang K, Li K, Wu J, Ji T. Graph-generative neural network for EEG-based epileptic seizure detection via discovery of dynamic brain functional connectivity. Sci Rep 2022; 12:18998. [PMID: 36348082 DOI: 10.1038/s41598-022-23656-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 11/03/2022] [Indexed: 11/09/2022] Open
Abstract
Dynamic complexity in brain functional connectivity has hindered the effective use of signal processing or machine learning methods to diagnose neurological disorders such as epilepsy. This paper proposed a new graph-generative neural network (GGN) model for the dynamic discovery of brain functional connectivity via deep analysis of scalp electroencephalogram (EEG) signals recorded from various regions of a patient's scalp. Brain functional connectivity graphs are generated for the extraction of spatial-temporal resolution of various onset epilepsy seizure patterns. Our supervised GGN model was substantiated by seizure detection and classification experiments. We train the GGN model using a clinically proven dataset of over 3047 epileptic seizure cases. The GGN model achieved a 91% accuracy in classifying seven types of epileptic seizure attacks, which outperformed the 65%, 74%, and 82% accuracy in using the convolutional neural network (CNN), graph neural networks (GNN), and transformer models, respectively. We present the GGN model architecture and operational steps to assist neuroscientists or brain specialists in using dynamic functional connectivity information to detect neurological disorders. Furthermore, we suggest to merge our spatial-temporal graph generator design in upgrading the conventional CNN and GNN models with dynamic convolutional kernels for accuracy enhancement.
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20
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Ueda M, Usami K, Yamao Y, Yamawaki R, Umaba C, Liang N, Nankaku M, Mineharu Y, Honda M, Hitomi T, Ikeguchi R, Ikeda A, Miyamoto S, Matsuda S, Arakawa Y. Correlation between brain functional connectivity and neurocognitive function in patients with left frontal glioma. Sci Rep 2022; 12:18302. [PMID: 36347905 PMCID: PMC9643499 DOI: 10.1038/s41598-022-22493-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 10/14/2022] [Indexed: 11/11/2022] Open
Abstract
The association between neurocognitive function (NCF) impairment and brain cortical functional connectivity in glioma patients remains unclear. The correlations between brain oscillatory activity or functional connectivity and NCF measured by the Wechsler Adult Intelligence Scale full-scale intelligence quotient scores (WAIS FSIQ), the Wechsler Memory Scale-revised general memory scores (WMS-R GM), and the Western aphasia battery aphasia quotient scores (WAB AQ) were evaluated in 18 patients with left frontal glioma using resting-state electroencephalography (EEG). Current source density (CSD) and lagged phase synchronization (LPS) were analyzed using exact low-resolution electromagnetic tomography (eLORETA). Although 2 and 2 patients scored in the borderline range of WAIS FSIQ and WMS-R GM, respectively, the mean WAIS FSIQ, WMS-R GM, and WAB AQ values of all patients were within normal limits, and none had aphasia. In the correlation analysis, lower WMS-R GM was associated with a higher LPS value between the right anterior prefrontal cortex and the left superior parietal lobule in the beta1 band (13-20 Hz, R = - 0.802, P = 0.012). These findings suggest that LPS evaluated by scalp EEG is associated with memory function in patients with left frontal glioma and mild NCF disorders.
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Affiliation(s)
- Masaya Ueda
- grid.411217.00000 0004 0531 2775Rehabilitation Unit, Kyoto University Hospital, Kyoto, Japan
| | - Kiyohide Usami
- grid.258799.80000 0004 0372 2033Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Yukihiro Yamao
- grid.258799.80000 0004 0372 2033Department of Neurosurgery, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Rie Yamawaki
- grid.411217.00000 0004 0531 2775Rehabilitation Unit, Kyoto University Hospital, Kyoto, Japan
| | - Chinatsu Umaba
- grid.411217.00000 0004 0531 2775Rehabilitation Unit, Kyoto University Hospital, Kyoto, Japan ,grid.258799.80000 0004 0372 2033Department of Human Health Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Nan Liang
- grid.258799.80000 0004 0372 2033Department of Human Health Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Manabu Nankaku
- grid.411217.00000 0004 0531 2775Rehabilitation Unit, Kyoto University Hospital, Kyoto, Japan
| | - Yohei Mineharu
- grid.258799.80000 0004 0372 2033Department of Neurosurgery, Kyoto University Graduate School of Medicine, Kyoto, Japan ,grid.258799.80000 0004 0372 2033Department of Artificial Intelligence in Healthcare and Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Masayuki Honda
- grid.258799.80000 0004 0372 2033Department of Clinical Laboratory Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Takefumi Hitomi
- grid.258799.80000 0004 0372 2033Department of Clinical Laboratory Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Ryosuke Ikeguchi
- grid.411217.00000 0004 0531 2775Rehabilitation Unit, Kyoto University Hospital, Kyoto, Japan ,grid.258799.80000 0004 0372 2033Department of Orthopedic Surgery, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Akio Ikeda
- grid.258799.80000 0004 0372 2033Department of Epilepsy, Movement Disorders and Physiology, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Susumu Miyamoto
- grid.258799.80000 0004 0372 2033Department of Neurosurgery, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Shuichi Matsuda
- grid.411217.00000 0004 0531 2775Rehabilitation Unit, Kyoto University Hospital, Kyoto, Japan ,grid.258799.80000 0004 0372 2033Department of Orthopedic Surgery, Kyoto University Graduate School of Medicine, Kyoto, Japan
| | - Yoshiki Arakawa
- grid.258799.80000 0004 0372 2033Department of Neurosurgery, Kyoto University Graduate School of Medicine, Kyoto, Japan
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21
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Sajad A, Errington SP, Schall JD. Functional architecture of executive control and associated event-related potentials in macaques. Nat Commun 2022; 13:6270. [PMID: 36271051 DOI: 10.1038/s41467-022-33942-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 10/07/2022] [Indexed: 12/25/2022] Open
Abstract
The medial frontal cortex (MFC) enables executive control by monitoring relevant information and using it to adapt behavior. In macaques performing a saccade countermanding (stop-signal) task, we simultaneously recorded electrical potentials over MFC and neural spiking across all layers of the supplementary eye field (SEF). We report the laminar organization of neurons enabling executive control by monitoring the conflict between incompatible responses, the timing of events, and sustaining goal maintenance. These neurons were a mix of narrow-spiking and broad-spiking found in all layers, but those predicting the duration of control and sustaining the task goal until the release of operant control were more commonly narrow-spiking neurons confined to layers 2 and 3 (L2/3). We complement these results with evidence for a monkey homolog of the N2/P3 event-related potential (ERP) complex associated with response inhibition. N2 polarization varied with error-likelihood and P3 polarization varied with the duration of expected control. The amplitude of the N2 and P3 were predicted by the spike rate of different classes of neurons located in L2/3 but not L5/6. These findings reveal features of the cortical microcircuitry supporting executive control and producing associated ERPs.
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22
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Rêgo GG, Gonçalves ÓF, Boggio PS. Attention neuroenhancement through tDCS or neurofeedback: a randomized, single-blind, controlled trial. Sci Rep 2022; 12:17613. [PMID: 36266396 DOI: 10.1038/s41598-022-22245-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 10/12/2022] [Indexed: 01/13/2023] Open
Abstract
Neurofeedback and transcranial Direct Current Stimulation (tDCS) are promising techniques for neuroenhancement of attentional performance. As far as we know no study compared both techniques on attentional performance in healthy participants. We compared tDCS and neurofeedback in a randomized, single-blind, controlled experiment assessing both behavioral (accuracy and time reaction) and electrophysiological (N1, P1, and P3 components) data of participants responding to the Attention Network Task (ANT). Eighty volunteers volunteered for this study. We adopted standard protocols for both techniques, i.e., a Sensorimotor Rhythm (SMR) protocol for neurofeedback and the right DLPFC anodal stimulation for tDCS, applied over nine sessions (two weeks). We did not find significant differences between treatment groups on ANT, neither at the behavioral nor at the electrophysiological levels. However, we found that participants from both neuromodulation groups, irrespective of if active or sham, reported attentional improvements in response to the treatment on a subjective scale. Our study adds another null result to the neuromodulation literature, showing that neurofeedback and tDCS effects are more complex than previously suggested and associated with placebo effect. More studies in neuroenhancement literature are necessary to fully comprehend neuromodulation mechanisms.
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23
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Dearborn JT, Nelvagal HR, Rensing NR, Takahashi K, Hughes SM, Wishart TM, Cooper JD, Wong M, Sands MS. Effects of chronic cannabidiol in a mouse model of naturally occurring neuroinflammation, neurodegeneration, and spontaneous seizures. Sci Rep 2022; 12:11286. [PMID: 35789177 DOI: 10.1038/s41598-022-15134-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 06/20/2022] [Indexed: 11/25/2022] Open
Abstract
Cannabidiol (CBD) has gained attention as a therapeutic agent and is purported to have immunomodulatory, neuroprotective, and anti-seizure effects. Here, we determined the effects of chronic CBD administration in a mouse model of CLN1 disease (Cln1-/-) that simultaneously exhibits neuroinflammation, neurodegeneration, and spontaneous seizures. Proteomic analysis showed that putative CBD receptors are expressed at similar levels in the brains of Cln1-/- mice compared to normal animals. Cln1-/- mice received an oral dose (100 mg/kg/day) of CBD for six months and were evaluated for changes in pathological markers of disease and seizures. Chronic cannabidiol administration was well-tolerated, high levels of CBD were detected in the brain, and markers of astrocytosis and microgliosis were reduced. However, CBD had no apparent effect on seizure frequency or neuron survival. These data are consistent with CBD having immunomodulatory effects. It is possible that a higher dose of CBD could also reduce neurodegeneration and seizure frequency.
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Arts LPA, van den Broek EL. The fast continuous wavelet transformation (fCWT) for real-time, high-quality, noise-resistant time-frequency analysis. Nat Comput Sci 2022; 2:47-58. [PMID: 38177705 PMCID: PMC10766549 DOI: 10.1038/s43588-021-00183-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Accepted: 12/13/2021] [Indexed: 01/06/2024]
Abstract
The spectral analysis of signals is currently either dominated by the speed-accuracy trade-off or ignores a signal's often non-stationary character. Here we introduce an open-source algorithm to calculate the fast continuous wavelet transform (fCWT). The parallel environment of fCWT separates scale-independent and scale-dependent operations, while utilizing optimized fast Fourier transforms that exploit downsampled wavelets. fCWT is benchmarked for speed against eight competitive algorithms, tested on noise resistance and validated on synthetic electroencephalography and in vivo extracellular local field potential data. fCWT is shown to have the accuracy of CWT, to have 100 times higher spectral resolution than algorithms equal in speed, to be 122 times and 34 times faster than the reference and fastest state-of-the-art implementations and we demonstrate its real-time performance, as confirmed by the real-time analysis ratio. fCWT provides an improved balance between speed and accuracy, which enables real-time, wide-band, high-quality, time-frequency analysis of non-stationary noisy signals.
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Affiliation(s)
- Lukas P A Arts
- Department of Information and Computing Sciences, Utrecht University, Utrecht, The Netherlands.
| | - Egon L van den Broek
- Department of Information and Computing Sciences, Utrecht University, Utrecht, The Netherlands.
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25
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Grosselin F, Breton A, Yahia-Cherif L, Wang X, Spinelli G, Hugueville L, Fossati P, Attal Y, Navarro-Sune X, Chavez M, George N. Alpha activity neuromodulation induced by individual alpha-based neurofeedback learning in ecological context: a double-blind randomized study. Sci Rep 2021; 11:18489. [PMID: 34531416 PMCID: PMC8445968 DOI: 10.1038/s41598-021-96893-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 08/06/2021] [Indexed: 02/08/2023] Open
Abstract
The neuromodulation induced by neurofeedback training (NFT) remains a matter of debate. Investigating the modulation of brain activity specifically associated with NF requires controlling for multiple factors, such as reward, performance, congruency between task and targeted brain activity. This can be achieved using sham feedback (FB) control condition, equating all aspects of the experiment but the link between brain activity and FB. We aimed at investigating the modulation of individual alpha EEG activity induced by NFT in a double-blind, randomized, sham-controlled study. Forty-eight healthy participants were assigned to either NF (n = 25) or control (n = 23) group and performed alpha upregulation training (over 12 weeks) with a wearable EEG device. Participants of the NF group received FB based on their individual alpha activity. The control group received the auditory FB of participants of the NF group. An increase of alpha activity across training sessions was observed in the NF group only (p < 0.001). This neuromodulation was selective in that there was no evidence for similar effects in the theta (4-8 Hz) and low beta (13-18 Hz) bands. While alpha upregulation was found in the NF group only, psychological outcome variables showed overall increased feeling of control, decreased anxiety level and increased relaxation feeling, without any significant difference between the NF and the control groups. This is interpreted in terms of learning context and placebo effects. Our results pave the way to self-learnt, NF-based neuromodulation with light-weighted, wearable EEG systems.
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Affiliation(s)
- Fanny Grosselin
- Sorbonne Université, Institut du Cerveau-Paris Brain Institute (ICM), INSERM U 1127, CNRS UMR 7225, Equipe Aramis, 75013, Paris, France.
- myBrain Technologies, 75010, Paris, France.
- INRIA, Aramis Project-Team, 75013, Paris, France.
| | | | - Lydia Yahia-Cherif
- Institut du Cerveau-Paris Brain Institute-ICM, Centre MEG-EEG, Paris, France
- CNRS, UMR 7225, F-75013, Paris, France
- Inserm, U 1127, Paris, France
- Sorbonne Université, Paris, France
| | - Xi Wang
- myBrain Technologies, 75010, Paris, France
| | | | - Laurent Hugueville
- Institut du Cerveau-Paris Brain Institute-ICM, Centre MEG-EEG, Paris, France
- CNRS, UMR 7225, F-75013, Paris, France
- Inserm, U 1127, Paris, France
- Sorbonne Université, Paris, France
| | - Philippe Fossati
- CNRS, UMR 7225, F-75013, Paris, France
- Inserm, U 1127, Paris, France
- Sorbonne Université, Paris, France
- Institut du Cerveau-Paris Brain Institute-ICM, Equipe CIA-Cognitive Control, Interoception, Attention, 75013, Paris, France
- AP-HP, Hôpital Pitié-Salpêtrière, Service de Psychiatrie Adulte, 75013, Paris, France
| | | | | | | | - Nathalie George
- Institut du Cerveau-Paris Brain Institute-ICM, Centre MEG-EEG, Paris, France
- CNRS, UMR 7225, F-75013, Paris, France
- Inserm, U 1127, Paris, France
- Sorbonne Université, Paris, France
- Institut du Cerveau-Paris Brain Institute-ICM, Equipe Experimental Neurosurgery, 75013, Paris, France
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26
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Abstract
Understanding and improving memory are vital to enhance human life. Theta rhythm is associated with memory consolidation and coding, but the trainability and effects on long-term memory of theta rhythm are unknown. This study investigated the ability to improve long-term memory using a neurofeedback (NFB) technique reflecting the theta/low-beta power ratio on an electroencephalogram (EEG). Our study consisted of three stages. First, the long-term memory of participants was measured. In the second stage, the participants in the NFB group received 3 days of theta/low-beta NFB training. In the third stage, the long-term memory was measured again. The NFB group had better episodic and semantic long-term memory than the control group and significant differences in brain activity between episodic and semantic memory during the recall tests were revealed. These findings suggest that it is possible to improve episodic and semantic long-term memory abilities through theta/low-beta NFB training.
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Affiliation(s)
- Yu-Hsuan Tseng
- grid.177174.30000 0001 2242 4849Graduate School of Systems Life Sciences, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka Japan
| | - Kaori Tamura
- grid.418051.90000 0000 8774 3245Faculty of Information Engineering, Fukuoka Institute of Technology, 3-30-1 Wajiro-higashi, Higashi-ku, Fukuoka Japan
| | - Tsuyoshi Okamoto
- grid.177174.30000 0001 2242 4849Graduate School of Systems Life Sciences, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka Japan ,grid.177174.30000 0001 2242 4849Faculty of Arts and Science, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka Japan
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27
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Abstract
Sleep disorders affect a large portion of the global population and are strong predictors of morbidity and all-cause mortality. Sleep staging segments a period of sleep into a sequence of phases providing the basis for most clinical decisions in sleep medicine. Manual sleep staging is difficult and time-consuming as experts must evaluate hours of polysomnography (PSG) recordings with electroencephalography (EEG) and electrooculography (EOG) data for each patient. Here, we present U-Sleep, a publicly available, ready-to-use deep-learning-based system for automated sleep staging ( sleep.ai.ku.dk ). U-Sleep is a fully convolutional neural network, which was trained and evaluated on PSG recordings from 15,660 participants of 16 clinical studies. It provides accurate segmentations across a wide range of patient cohorts and PSG protocols not considered when building the system. U-Sleep works for arbitrary combinations of typical EEG and EOG channels, and its special deep learning architecture can label sleep stages at shorter intervals than the typical 30 s periods used during training. We show that these labels can provide additional diagnostic information and lead to new ways of analyzing sleep. U-Sleep performs on par with state-of-the-art automatic sleep staging systems on multiple clinical datasets, even if the other systems were built specifically for the particular data. A comparison with consensus-scores from a previously unseen clinic shows that U-Sleep performs as accurately as the best of the human experts. U-Sleep can support the sleep staging workflow of medical experts, which decreases healthcare costs, and can provide highly accurate segmentations when human expertize is lacking.
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Affiliation(s)
- Mathias Perslev
- Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
| | - Sune Darkner
- Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
| | - Lykke Kempfner
- Danish Center for Sleep Medicine, Rigshospitalet, Copenhagen, Denmark
| | - Miki Nikolic
- Danish Center for Sleep Medicine, Rigshospitalet, Copenhagen, Denmark
| | | | - Christian Igel
- Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.
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Chamanzar A, Behrmann M, Grover P. Neural silences can be localized rapidly using noninvasive scalp EEG. Commun Biol 2021; 4:429. [PMID: 33785813 DOI: 10.1038/s42003-021-01768-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 01/28/2021] [Indexed: 02/01/2023] Open
Abstract
A rapid and cost-effective noninvasive tool to detect and characterize neural silences can be of important benefit in diagnosing and treating many disorders. We propose an algorithm, SilenceMap, for uncovering the absence of electrophysiological signals, or neural silences, using noninvasive scalp electroencephalography (EEG) signals. By accounting for the contributions of different sources to the power of the recorded signals, and using a hemispheric baseline approach and a convex spectral clustering framework, SilenceMap permits rapid detection and localization of regions of silence in the brain using a relatively small amount of EEG data. SilenceMap substantially outperformed existing source localization algorithms in estimating the center-of-mass of the silence for three pediatric cortical resection patients, using fewer than 3 minutes of EEG recordings (13, 2, and 11mm vs. 25, 62, and 53 mm), as well for 100 different simulated regions of silence based on a real human head model (12 ± 0.7 mm vs. 54 ± 2.2 mm). SilenceMap paves the way towards accessible early diagnosis and continuous monitoring of altered physiological properties of human cortical function.
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29
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Burelo K, Sharifshazileh M, Krayenbühl N, Ramantani G, Indiveri G, Sarnthein J. A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG. Sci Rep 2021; 11:6719. [PMID: 33762590 PMCID: PMC7990937 DOI: 10.1038/s41598-021-85827-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 03/05/2021] [Indexed: 12/17/2022] Open
Abstract
To achieve seizure freedom, epilepsy surgery requires the complete resection of the epileptogenic brain tissue. In intraoperative electrocorticography (ECoG) recordings, high frequency oscillations (HFOs) generated by epileptogenic tissue can be used to tailor the resection margin. However, automatic detection of HFOs in real-time remains an open challenge. Here we present a spiking neural network (SNN) for automatic HFO detection that is optimally suited for neuromorphic hardware implementation. We trained the SNN to detect HFO signals measured from intraoperative ECoG on-line, using an independently labeled dataset (58 min, 16 recordings). We targeted the detection of HFOs in the fast ripple frequency range (250-500 Hz) and compared the network results with the labeled HFO data. We endowed the SNN with a novel artifact rejection mechanism to suppress sharp transients and demonstrate its effectiveness on the ECoG dataset. The HFO rates (median 6.6 HFO/min in pre-resection recordings) detected by this SNN are comparable to those published in the dataset (Spearman's [Formula: see text] = 0.81). The postsurgical seizure outcome was "predicted" with 100% (CI [63 100%]) accuracy for all 8 patients. These results provide a further step towards the construction of a real-time portable battery-operated HFO detection system that can be used during epilepsy surgery to guide the resection of the epileptogenic zone.
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Affiliation(s)
- Karla Burelo
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057, Zurich, Switzerland
- Department of Neurosurgery, University Hospital Zurich, University of Zurich, 8091, Zurich, Switzerland
| | - Mohammadali Sharifshazileh
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057, Zurich, Switzerland
- Department of Neurosurgery, University Hospital Zurich, University of Zurich, 8091, Zurich, Switzerland
| | - Niklaus Krayenbühl
- University Children's Hospital, University of Zurich, 8032, Zurich, Switzerland
- Klinisches Neurozentrum Zürich, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland
| | - Georgia Ramantani
- University Children's Hospital, University of Zurich, 8032, Zurich, Switzerland
- Klinisches Neurozentrum Zürich, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland
- Neuroscience Center Zurich, ETH Zurich, 8092, Zurich, Switzerland
| | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057, Zurich, Switzerland
- Neuroscience Center Zurich, ETH Zurich, 8092, Zurich, Switzerland
| | - Johannes Sarnthein
- Department of Neurosurgery, University Hospital Zurich, University of Zurich, 8091, Zurich, Switzerland.
- Klinisches Neurozentrum Zürich, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland.
- Neuroscience Center Zurich, ETH Zurich, 8092, Zurich, Switzerland.
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30
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Somers B, Long CJ, Francart T. EEG-based diagnostics of the auditory system using cochlear implant electrodes as sensors. Sci Rep 2021; 11:5383. [PMID: 33686155 DOI: 10.1038/s41598-021-84829-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Accepted: 02/18/2021] [Indexed: 01/31/2023] Open
Abstract
The cochlear implant is one of the most successful medical prostheses, allowing deaf and severely hearing-impaired persons to hear again by electrically stimulating the auditory nerve. A trained audiologist adjusts the stimulation settings for good speech understanding, known as "fitting" the implant. This process is based on subjective feedback from the user, making it time-consuming and challenging, especially in paediatric or communication-impaired populations. Furthermore, fittings only happen during infrequent sessions at a clinic, and therefore cannot take into account variable factors that affect the user's hearing, such as physiological changes and different listening environments. Objective audiometry, in which brain responses evoked by auditory stimulation are collected and analysed, removes the need for active patient participation. However, recording of brain responses still requires expensive equipment that is cumbersome to use. An elegant solution is to record the neural signals using the implant itself. We demonstrate for the first time the recording of continuous electroencephalographic (EEG) signals from the implanted intracochlear electrode array in human subjects, using auditory evoked potentials originating from different brain regions. This was done using a temporary recording set-up with a percutaneous connector used for research purposes. Furthermore, we show that the response morphologies and amplitudes depend crucially on the recording electrode configuration. The integration of an EEG system into cochlear implants paves the way towards chronic neuro-monitoring of hearing-impaired patients in their everyday environment, and neuro-steered hearing prostheses, which can autonomously adjust their output based on neural feedback.
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31
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Jaramillo-Gonzalez A, Wu S, Tonin A, Rana A, Ardali MK, Birbaumer N, Chaudhary U. A dataset of EEG and EOG from an auditory EOG-based communication system for patients in locked-in state. Sci Data 2021; 8:8. [PMID: 33431874 PMCID: PMC7801642 DOI: 10.1038/s41597-020-00789-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Accepted: 11/30/2020] [Indexed: 11/20/2022] Open
Abstract
The dataset presented here contains recordings of electroencephalogram (EEG) and electrooculogram (EOG) from four advanced locked-in state (LIS) patients suffering from ALS (amyotrophic lateral sclerosis). These patients could no longer use commercial eye-trackers, but they could still move their eyes and used the remnant oculomotor activity to select letters to form words and sentences using a novel auditory communication system. Data were recorded from four patients during a variable range of visits (from 2 to 10), each visit comprised of 3.22 ± 1.21 days and consisted of 5.57 ± 2.61 sessions recorded per day. The patients performed a succession of different sessions, namely, Training, Feedback, Copy spelling, and Free spelling. The dataset provides an insight into the progression of ALS and presents a valuable opportunity to design and improve assistive and alternative communication technologies and brain-computer interfaces. It might also help redefine the course of progression in ALS, thereby improving clinical judgement and treatment.
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Affiliation(s)
- Andres Jaramillo-Gonzalez
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
| | - Shizhe Wu
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
| | | | - Aygul Rana
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
| | - Majid Khalili Ardali
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
| | - Niels Birbaumer
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
- Ospedale San Camillo, IRCCS, Venice, Italy
| | - Ujwal Chaudhary
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany.
- Wyss Center for Bio and Neuroengineering, Geneva, Switzerland.
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32
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Gómez C, Arbeláez P, Navarrete M, Alvarado-Rojas C, Le Van Quyen M, Valderrama M. Automatic seizure detection based on imaged-EEG signals through fully convolutional networks. Sci Rep 2020; 10:21833. [PMID: 33311533 PMCID: PMC7732993 DOI: 10.1038/s41598-020-78784-3] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 11/26/2020] [Indexed: 02/06/2023] Open
Abstract
Seizure detection is a routine process in epilepsy units requiring manual intervention of well-trained specialists. This process could be extensive, inefficient and time-consuming, especially for long term recordings. We proposed an automatic method to detect epileptic seizures using an imaged-EEG representation of brain signals. To accomplish this, we analyzed EEG signals from two different datasets: the CHB-MIT Scalp EEG database and the EPILEPSIAE project that includes scalp and intracranial recordings. We used fully convolutional neural networks to automatically detect seizures. For our best model, we reached average accuracy and specificity values of 99.3% and 99.6%, respectively, for the CHB-MIT dataset, and corresponding values of 98.0% and 98.3% for the EPILEPSIAE patients. For these patients, the inclusion of intracranial electrodes together with scalp ones increased the average accuracy and specificity values to 99.6% and 58.3%, respectively. Regarding the other metrics, our best model reached average precision of 62.7%, recall of 58.3%, F-measure of 59.0% and AP of 54.5% on the CHB-MIT recordings, and comparatively lowers performances for the EPILEPSIAE dataset. For both databases, the number of false alarms per hour reached values less than 0.5/h for 92% of the CHB-MIT patients and less than 1.0/h for 80% of the EPILEPSIAE patients. Compared to recent studies, our lightweight approach does not need any estimation of pre-selected features and demonstrates high performances with promising possibilities for the introduction of such automatic methods in the clinical practice.
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Affiliation(s)
- Catalina Gómez
- Department of Biomedical Engineering, Universidad de los Andes, Bogotá, Colombia
- Center for Research and Formation in Artificial Intelligence (CINFONIA), Universidad de los Andes, Bogotá, Colombia
| | - Pablo Arbeláez
- Department of Biomedical Engineering, Universidad de los Andes, Bogotá, Colombia
- Center for Research and Formation in Artificial Intelligence (CINFONIA), Universidad de los Andes, Bogotá, Colombia
| | - Miguel Navarrete
- Department of Biomedical Engineering, Universidad de los Andes, Bogotá, Colombia
- School of Psychology, Brain Research Imaging Centre, Cardiff University, Cardiff, UK
| | | | - Michel Le Van Quyen
- Laboratoire d'Imagerie Biomédicale (LIB), Inserm U1146 / Sorbonne Université UMCR2 / UMR7371 CNRS, 15 rue de l'Ecole de Médecine, 75006, Paris, France
| | - Mario Valderrama
- Department of Biomedical Engineering, Universidad de los Andes, Bogotá, Colombia.
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Tait L, Tamagnini F, Stothart G, Barvas E, Monaldini C, Frusciante R, Volpini M, Guttmann S, Coulthard E, Brown JT, Kazanina N, Goodfellow M. EEG microstate complexity for aiding early diagnosis of Alzheimer's disease. Sci Rep 2020; 10:17627. [PMID: 33077823 PMCID: PMC7572485 DOI: 10.1038/s41598-020-74790-7] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 10/05/2020] [Indexed: 11/25/2022] Open
Abstract
The dynamics of the resting brain exhibit transitions between a small number of discrete networks, each remaining stable for tens to hundreds of milliseconds. These functional microstates are thought to be the building blocks of spontaneous consciousness. The electroencephalogram (EEG) is a useful tool for imaging microstates, and EEG microstate analysis can potentially give insight into altered brain dynamics underpinning cognitive impairment in disorders such as Alzheimer's disease (AD). Since EEG is non-invasive and relatively inexpensive, EEG microstates have the potential to be useful clinical tools for aiding early diagnosis of AD. In this study, EEG was collected from two independent cohorts of probable AD and cognitively healthy control participants, and a cohort of mild cognitive impairment (MCI) patients with four-year clinical follow-up. The microstate associated with the frontoparietal working-memory/attention network was altered in AD due to parietal inactivation. Using a novel measure of complexity, we found microstate transitioning was slower and less complex in AD. When combined with a spectral EEG measure, microstate complexity could classify AD with sensitivity and specificity > 80%, which was tested on an independent cohort, and could predict progression from MCI to AD in a small preliminary test cohort of 11 participants. EEG microstates therefore have potential to be a non-invasive functional biomarker of AD.
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Affiliation(s)
- Luke Tait
- Living Systems Institute, University of Exeter, Exeter, UK.
- EPSRC Centre for Predictive Modelling in Healthcare, University of Exeter, Exeter, UK.
- College of Engineering, Maths, and Physical Sciences, University of Exeter, Exeter, UK.
- Cardiff University Brain Research Imaging Centre, School of Psychology, Cardiff University, Maindy Road, Cardiff, CF24 4HQ, UK.
| | - Francesco Tamagnini
- School of Pharmacy, University of Reading, Reading, UK
- University of Exeter Medical School, Exeter, UK
| | | | - Edoardo Barvas
- San Marino Neurological Unit, San Marino Hospital, San Marino, Republic of San Marino
| | - Chiara Monaldini
- San Marino Neurological Unit, San Marino Hospital, San Marino, Republic of San Marino
| | - Roberto Frusciante
- San Marino Neurological Unit, San Marino Hospital, San Marino, Republic of San Marino
| | - Mirco Volpini
- San Marino Neurological Unit, San Marino Hospital, San Marino, Republic of San Marino
| | - Susanna Guttmann
- San Marino Neurological Unit, San Marino Hospital, San Marino, Republic of San Marino
| | | | - Jon T Brown
- University of Exeter Medical School, Exeter, UK
| | - Nina Kazanina
- School of Psychological Science, University of Bristol, Bristol, UK
| | - Marc Goodfellow
- Living Systems Institute, University of Exeter, Exeter, UK
- EPSRC Centre for Predictive Modelling in Healthcare, University of Exeter, Exeter, UK
- College of Engineering, Maths, and Physical Sciences, University of Exeter, Exeter, UK
- Centre for Biomedical Modelling and Analysis, University of Exeter, Exeter, UK
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34
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Demuru M, Kalitzin S, Zweiphenning W, van Blooijs D, Van't Klooster M, Van Eijsden P, Leijten F, Zijlmans M. The value of intra-operative electrographic biomarkers for tailoring during epilepsy surgery: from group-level to patient-level analysis. Sci Rep 2020; 10:14654. [PMID: 32887896 PMCID: PMC7474097 DOI: 10.1038/s41598-020-71359-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 04/23/2020] [Indexed: 01/08/2023] Open
Abstract
Signal analysis biomarkers, in an intra-operative setting, may be complementary tools to guide and tailor the resection in drug-resistant focal epilepsy patients. Effective assessment of biomarker performances are needed to evaluate their clinical usefulness and translation. We defined a realistic ground-truth scenario and compared the effectiveness of different biomarkers alone and combined to localize epileptogenic tissue during surgery. We investigated the performances of univariate, bivariate and multivariate signal biomarkers applied to 1 min inter-ictal intra-operative electrocorticography to discriminate between epileptogenic and non-epileptogenic locations in 47 drug-resistant people with epilepsy (temporal and extra-temporal) who had been seizure-free one year after the operation. The best result using a single biomarker was obtained using the phase-amplitude coupling measure for which the epileptogenic tissue was localized in 17 out of 47 patients. Combining the whole set of biomarkers provided an improvement of the performances: 27 out of 47 patients. Repeating the analysis only on the temporal-lobe resections we detected the epileptogenic tissue in 29 out of 30 combining all the biomarkers. We suggest that the assessment of biomarker performances on a ground-truth scenario is required to have a proper estimate on how biomarkers translate into clinical use. Phase-amplitude coupling seems the best performing single biomarker and combining biomarkers improves localization of epileptogenic tissue. Performance achieved is not adequate as a tool in the operation theater yet, but it can improve the understanding of pathophysiological process.
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Affiliation(s)
- Matteo Demuru
- Stichting Epilepsie Instellingen Nederland (SEIN), Heemstede, The Netherlands.
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands.
| | - Stiliyan Kalitzin
- Stichting Epilepsie Instellingen Nederland (SEIN), Heemstede, The Netherlands
- Image Sciences Institute, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Willemiek Zweiphenning
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Dorien van Blooijs
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Maryse Van't Klooster
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Pieter Van Eijsden
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Frans Leijten
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Maeike Zijlmans
- Stichting Epilepsie Instellingen Nederland (SEIN), Heemstede, The Netherlands
- Department of Neurology and Neurosurgery, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands
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35
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Petit S, Badcock NA, Grootswagers T, Woolgar A. Unconstrained multivariate EEG decoding can help detect lexical-semantic processing in individual children. Sci Rep 2020; 10:10849. [PMID: 32616736 PMCID: PMC7331680 DOI: 10.1038/s41598-020-67407-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 06/03/2020] [Indexed: 11/30/2022] Open
Abstract
In conditions such as minimally-verbal autism, standard assessments of language comprehension are often unreliable. Given the known heterogeneity within the autistic population, it is crucial to design tests of semantic comprehension that are sensitive in individuals. Recent efforts to develop neural signals of language comprehension have focused on the N400, a robust marker of lexical-semantic violation at the group level. However, homogeneity of response in individual neurotypical children has not been established. Here, we presented 20 neurotypical children with congruent and incongruent visual animations and spoken sentences while measuring their neural response using electroencephalography (EEG). Despite robust group-level responses, we found high inter-individual variability in response to lexico-semantic anomalies. To overcome this, we analysed our data using temporally and spatially unconstrained multivariate pattern analyses (MVPA), supplemented by descriptive analyses to examine the timecourse, topography, and strength of the effect. Our results show that neurotypical children exhibit heterogenous responses to lexical-semantic violation, implying that any application to heterogenous disorders such as autism spectrum disorder will require individual-subject analyses that are robust to variation in topology and timecourse of neural responses.
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Affiliation(s)
- Selene Petit
- Department of Cognitive Science, Macquarie University, Sydney, Australia.
- ARC Centre of Excellence in Cognition and Its Disorders (CCD), Sydney, Australia.
| | - Nicholas A Badcock
- Department of Cognitive Science, Macquarie University, Sydney, Australia
- ARC Centre of Excellence in Cognition and Its Disorders (CCD), Sydney, Australia
| | - Tijl Grootswagers
- Department of Cognitive Science, Macquarie University, Sydney, Australia
- ARC Centre of Excellence in Cognition and Its Disorders (CCD), Sydney, Australia
- School of Psychology, University of Sydney, Sydney, Australia
| | - Alexandra Woolgar
- Department of Cognitive Science, Macquarie University, Sydney, Australia
- ARC Centre of Excellence in Cognition and Its Disorders (CCD), Sydney, Australia
- Medical Research Council (UK), Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, UK
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36
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da Cruz JR, Favrod O, Roinishvili M, Chkonia E, Brand A, Mohr C, Figueiredo P, Herzog MH. EEG microstates are a candidate endophenotype for schizophrenia. Nat Commun 2020; 11:3089. [PMID: 32555168 PMCID: PMC7303216 DOI: 10.1038/s41467-020-16914-1] [Citation(s) in RCA: 91] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 05/28/2020] [Indexed: 12/11/2022] Open
Abstract
Electroencephalogram microstates are recurrent scalp potential configurations that remain stable for around 90 ms. The dynamics of two of the four canonical classes of microstates, commonly labeled as C and D, have been suggested as a potential endophenotype for schizophrenia. For endophenotypes, unaffected relatives of patients must show abnormalities compared to controls. Here, we examined microstate dynamics in resting-state recordings of unaffected siblings of patients with schizophrenia, patients with schizophrenia, healthy controls, and patients with first episodes of psychosis (FEP). Patients with schizophrenia and their siblings showed increased presence of microstate class C and decreased presence of microstate class D compared to controls. No difference was found between FEP and chronic patients. Our findings suggest that the dynamics of microstate classes C and D are a candidate endophenotype for schizophrenia.
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Affiliation(s)
- Janir Ramos da Cruz
- Laboratory of Psychophysics, Brain Mind Institute, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
- Institute for Systems and Robotics-Lisbon (LARSyS) and Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal.
| | - Ophélie Favrod
- Laboratory of Psychophysics, Brain Mind Institute, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Maya Roinishvili
- Laboratory of Vision Physiology, Beritashvili Centre of Experimental Biomedicine, Tbilisi, Georgia
- Institute of Cognitive Neurosciences, Free University of Tbilisi, Tbilisi, Georgia
| | - Eka Chkonia
- Institute of Cognitive Neurosciences, Free University of Tbilisi, Tbilisi, Georgia
- Department of Psychiatry, Tbilisi State Medical University, Tbilisi, Georgia
| | - Andreas Brand
- Laboratory of Psychophysics, Brain Mind Institute, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Christine Mohr
- Faculté des Sciences Sociales et Politiques, Institut de Psychologie, Bâtiment Geopolis, Lausanne, Switzerland
| | - Patrícia Figueiredo
- Institute for Systems and Robotics-Lisbon (LARSyS) and Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Michael H Herzog
- Laboratory of Psychophysics, Brain Mind Institute, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
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37
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Mikulan E, Russo S, Parmigiani S, Sarasso S, Zauli FM, Rubino A, Avanzini P, Cattani A, Sorrentino A, Gibbs S, Cardinale F, Sartori I, Nobili L, Massimini M, Pigorini A. Simultaneous human intracerebral stimulation and HD-EEG, ground-truth for source localization methods. Sci Data 2020; 7:127. [PMID: 32345974 PMCID: PMC7189230 DOI: 10.1038/s41597-020-0467-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 03/31/2020] [Indexed: 11/08/2022] Open
Abstract
Precisely localizing the sources of brain activity as recorded by EEG is a fundamental procedure and a major challenge for both research and clinical practice. Even though many methods and algorithms have been proposed, their relative advantages and limitations are still not well established. Moreover, these methods involve tuning multiple parameters, for which no principled way of selection exists yet. These uncertainties are emphasized due to the lack of ground-truth for their validation and testing. Here we present the Localize-MI dataset, which constitutes the first open dataset that comprises EEG recorded electrical activity originating from precisely known locations inside the brain of living humans. High-density EEG was recorded as single-pulse biphasic currents were delivered at intensities ranging from 0.1 to 5 mA through stereotactically implanted electrodes in diverse brain regions during pre-surgical evaluation of patients with drug-resistant epilepsy. The uses of this dataset range from the estimation of in vivo tissue conductivity to the development, validation and testing of forward and inverse solution methods.
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Affiliation(s)
- Ezequiel Mikulan
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
| | - Simone Russo
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
| | - Sara Parmigiani
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
| | - Simone Sarasso
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
| | - Flavia Maria Zauli
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
| | - Annalisa Rubino
- Centre of Epilepsy Surgery "C. Munari", Department of Neuroscience, Niguarda Hospital, Milan, Italy
| | - Pietro Avanzini
- Institute of Neuroscience, National Research Council of Italy, Parma, Italy
| | - Anna Cattani
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
| | | | - Steve Gibbs
- Centre of Epilepsy Surgery "C. Munari", Department of Neuroscience, Niguarda Hospital, Milan, Italy
- Center for Advanced Research in Sleep Medicine, Hôpital du Sacré-Cœur de Montréal, Department of Neurosciences, University of Montreal, Montreal, Quebec, Canada
| | - Francesco Cardinale
- Centre of Epilepsy Surgery "C. Munari", Department of Neuroscience, Niguarda Hospital, Milan, Italy
| | - Ivana Sartori
- Centre of Epilepsy Surgery "C. Munari", Department of Neuroscience, Niguarda Hospital, Milan, Italy
| | - Lino Nobili
- Child Neuropsychiatry Unit, IRCCS 'G. Gaslini' Institute, Genoa, Italy
- DINOGMI, University of Genoa, Genoa, Italy
| | - Marcello Massimini
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy
- IRCCS Fondazione Don Gnocchi, Milan, Italy
| | - Andrea Pigorini
- Department of Biomedical and Clinical Sciences "L. Sacco", Università degli Studi di Milano, Milan, Italy.
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38
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Boran E, Fedele T, Steiner A, Hilfiker P, Stieglitz L, Grunwald T, Sarnthein J. Dataset of human medial temporal lobe neurons, scalp and intracranial EEG during a verbal working memory task. Sci Data 2020; 7:30. [PMID: 31964868 PMCID: PMC6972902 DOI: 10.1038/s41597-020-0364-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Accepted: 12/23/2019] [Indexed: 11/09/2022] Open
Abstract
We present an electrophysiological dataset recorded from nine subjects during a verbal working memory task. Subjects were epilepsy patients undergoing intracranial monitoring for the localization of epileptic seizures. Subjects performed a modified Sternberg task in which the encoding of memory items, maintenance, and recall were temporally separated. The dataset includes simultaneously recorded scalp EEG with the 10-20 system, intracranial EEG (iEEG) recorded with depth electrodes, waveforms and spike times of neurons recorded in the medial temporal lobe, and localization information on the depth electrodes. Subject characteristics and information on each trial (set size, match/mismatch, correct/incorrect, response, and response time) are given. For technical validation of data, we provide spike sorting quality metrics and the spectra of iEEG and scalp EEG signals. This dataset enables the investigation of working memory by providing simultaneous scalp EEG and iEEG recordings, which can be used for connectivity analysis, along with hard-to-obtain neuronal recordings from humans.
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Affiliation(s)
- Ece Boran
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
| | - Tommaso Fedele
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
- Neuroscience Center Zurich, ETH Zürich, Zürich, Switzerland
- Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Moscow, Russian Federation
| | - Adrian Steiner
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
| | - Peter Hilfiker
- Schweizerisches Epilepsie-Zentrum, 8008, Zürich, Switzerland
| | - Lennart Stieglitz
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
| | - Thomas Grunwald
- Schweizerisches Epilepsie-Zentrum, 8008, Zürich, Switzerland
- Klinik für Neurologie, UniversitätsSpital Zürich, 8091, Zürich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland.
- Neuroscience Center Zurich, ETH Zürich, Zürich, Switzerland.
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Wagner J, Martinez-Cancino R, Delorme A, Makeig S, Solis-Escalante T, Neuper C, Mueller-Putz G. High-density EEG mobile brain/body imaging data recorded during a challenging auditory gait pacing task. Sci Data 2019; 6:211. [PMID: 31624252 PMCID: PMC6797727 DOI: 10.1038/s41597-019-0223-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 09/06/2019] [Indexed: 02/07/2023] Open
Abstract
In this report we present a mobile brain/body imaging (MoBI) dataset that allows study of source-resolved cortical dynamics supporting coordinated gait movements in a rhythmic auditory cueing paradigm. Use of an auditory pacing stimulus stream has been recommended to identify deficits and treat gait impairments in neurologic populations. Here, the rhythmic cueing paradigm required healthy young participants to walk on a treadmill (constant speed) while attempting to maintain step synchrony with an auditory pacing stream and to adapt their step length and rate to unanticipated shifts in tempo of the pacing stimuli (e.g., sudden shifts to a faster or slower tempo). High-density electroencephalography (EEG, 108 channels), surface electromyography (EMG, bilateral tibialis anterior), pressure sensors on the heel (to register timing of heel strikes), and goniometers (knee, hip, and ankle joint angles) were concurrently recorded in 20 participants. The data is provided in the Brain Imaging Data Structure (BIDS) format to promote data sharing and reuse, and allow the inclusion of the data into fully automated data analysis workflows.
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Affiliation(s)
- Johanna Wagner
- Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA, USA.
- Laboratory for Brain Computer Interfaces, Institute of Neural Engineering, Graz University of Technology, Graz, Austria.
| | - Ramon Martinez-Cancino
- Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA, USA
- Electric and Computer Engineering Department, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
| | - Arnaud Delorme
- Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA, USA
| | - Scott Makeig
- Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA, USA
| | - Teodoro Solis-Escalante
- Laboratory for Brain Computer Interfaces, Institute of Neural Engineering, Graz University of Technology, Graz, Austria
- Department of Rehabilitation, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Christa Neuper
- Laboratory for Brain Computer Interfaces, Institute of Neural Engineering, Graz University of Technology, Graz, Austria
- Department of Psychology, University of Graz, Graz, Austria
| | - Gernot Mueller-Putz
- Laboratory for Brain Computer Interfaces, Institute of Neural Engineering, Graz University of Technology, Graz, Austria
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40
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Abstract
We describe driver behaviour and brain dynamics acquired from a 90-minute sustained-attention task in an immersive driving simulator. The data included 62 sessions of 32-channel electroencephalography (EEG) data for 27 subjects driving on a four-lane highway who were instructed to keep the car cruising in the centre of the lane. Lane-departure events were randomly induced to cause the car to drift from the original cruising lane towards the left or right lane. A complete trial included events with deviation onset, response onset, and response offset. The next trial, in which the subject was instructed to drive back to the original cruising lane, began 5-10 seconds after finishing the previous trial. We believe that this dataset will lead to the development of novel neural processing methodology that can be used to index brain cortical dynamics and detect driving fatigue and drowsiness. This publicly available dataset will be beneficial to the neuroscience and brain-computer interface communities.
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Affiliation(s)
- Zehong Cao
- Discipline of ICT, School of Technology, Environments and Design, College of Sciences and Engineering, University of Tasmania, Hobart, TAS, Australia.
| | - Chun-Hsiang Chuang
- Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan
| | - Jung-Kai King
- Brain Research Center, National Chiao Tung University, Hsinchu, Taiwan
| | - Chin-Teng Lin
- Centre for Artificial Intelligence, Faculty of Engineering and IT, University of Technology Sydney, Sydney, NSW, Australia.
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41
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Babayan A, Erbey M, Kumral D, Reinelt JD, Reiter AMF, Röbbig J, Schaare HL, Uhlig M, Anwander A, Bazin PL, Horstmann A, Lampe L, Nikulin VV, Okon-Singer H, Preusser S, Pampel A, Rohr CS, Sacher J, Thöne-Otto A, Trapp S, Nierhaus T, Altmann D, Arelin K, Blöchl M, Bongartz E, Breig P, Cesnaite E, Chen S, Cozatl R, Czerwonatis S, Dambrauskaite G, Dreyer M, Enders J, Engelhardt M, Fischer MM, Forschack N, Golchert J, Golz L, Guran CA, Hedrich S, Hentschel N, Hoffmann DI, Huntenburg JM, Jost R, Kosatschek A, Kunzendorf S, Lammers H, Lauckner ME, Mahjoory K, Kanaan AS, Mendes N, Menger R, Morino E, Näthe K, Neubauer J, Noyan H, Oligschläger S, Panczyszyn-Trzewik P, Poehlchen D, Putzke N, Roski S, Schaller MC, Schieferbein A, Schlaak B, Schmidt R, Gorgolewski KJ, Schmidt HM, Schrimpf A, Stasch S, Voss M, Wiedemann A, Margulies DS, Gaebler M, Villringer A. A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adults. Sci Data 2019; 6:180308. [PMID: 30747911 PMCID: PMC6371893 DOI: 10.1038/sdata.2018.308] [Citation(s) in RCA: 117] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Accepted: 10/12/2018] [Indexed: 12/14/2022] Open
Abstract
We present a publicly available dataset of 227 healthy participants comprising a young (N=153, 25.1±3.1 years, range 20-35 years, 45 female) and an elderly group (N=74, 67.6±4.7 years, range 59-77 years, 37 female) acquired cross-sectionally in Leipzig, Germany, between 2013 and 2015 to study mind-body-emotion interactions. During a two-day assessment, participants completed MRI at 3 Tesla (resting-state fMRI, quantitative T1 (MP2RAGE), T2-weighted, FLAIR, SWI/QSM, DWI) and a 62-channel EEG experiment at rest. During task-free resting-state fMRI, cardiovascular measures (blood pressure, heart rate, pulse, respiration) were continuously acquired. Anthropometrics, blood samples, and urine drug tests were obtained. Psychiatric symptoms were identified with Standardized Clinical Interview for DSM IV (SCID-I), Hamilton Depression Scale, and Borderline Symptoms List. Psychological assessment comprised 6 cognitive tests as well as 21 questionnaires related to emotional behavior, personality traits and tendencies, eating behavior, and addictive behavior. We provide information on study design, methods, and details of the data. This dataset is part of the larger MPI Leipzig Mind-Brain-Body database.
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Affiliation(s)
- Anahit Babayan
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- MindBrainBody Institute at the Berlin School of Mind and Brain, Humboldt-Universität Berlin, Berlin, Germany
| | - Miray Erbey
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- MindBrainBody Institute at the Berlin School of Mind and Brain, Humboldt-Universität Berlin, Berlin, Germany
- International Max Planck School on the Life Course, Max Planck Institute for Human Development, Berlin, Germany
| | - Deniz Kumral
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- MindBrainBody Institute at the Berlin School of Mind and Brain, Humboldt-Universität Berlin, Berlin, Germany
| | - Janis D. Reinelt
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Andrea M. F. Reiter
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- International Max Planck Research School NeuroCom, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Max Planck Research Group for Cognitive and Affective Control of Behavioral Adaptation, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Lifespan Developmental Neuroscience, Technische Universität Dresden, Dresden, Germany
| | - Josefin Röbbig
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - H. Lina Schaare
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- International Max Planck Research School NeuroCom, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Marie Uhlig
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- International Max Planck Research School NeuroCom, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Alfred Anwander
- Department of Neuropsychology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Pierre-Louis Bazin
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Netherlands Institute for Neuroscience, Amsterdam, Netherlands
- Spinoza Centre for Neuroimaging, Amsterdam, Netherlands
| | - Annette Horstmann
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- IFB Adiposity Diseases, Leipzig University Medical Center, Leipzig, Germany
| | - Leonie Lampe
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Vadim V. Nikulin
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Hadas Okon-Singer
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Department of Psychology, University of Haifa, Haifa, Israel
| | - Sven Preusser
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - André Pampel
- Nuclear Magnetic Resonance Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Christiane S. Rohr
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Julia Sacher
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Angelika Thöne-Otto
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Day Clinic for Cognitive Neurology, University Hospital Leipzig, Leipzig, Germany
| | - Sabrina Trapp
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Till Nierhaus
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Denise Altmann
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Katrin Arelin
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Maria Blöchl
- International Max Planck Research School NeuroCom, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Department of Psychology, University Leipzig, Leipzig, Germany
| | - Edith Bongartz
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Patric Breig
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Elena Cesnaite
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Sufang Chen
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Roberto Cozatl
- Database Management, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Saskia Czerwonatis
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Gabriele Dambrauskaite
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Maria Dreyer
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Jessica Enders
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Melina Engelhardt
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Marie Michele Fischer
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Norman Forschack
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Johannes Golchert
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Laura Golz
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - C. Alexandrina Guran
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Susanna Hedrich
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Nicole Hentschel
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Daria I. Hoffmann
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Julia M. Huntenburg
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Rebecca Jost
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Anna Kosatschek
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Stella Kunzendorf
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Hannah Lammers
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Mark E. Lauckner
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Keyvan Mahjoory
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Ahmad S. Kanaan
- Nuclear Magnetic Resonance Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Natacha Mendes
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Ramona Menger
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Enzo Morino
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Karina Näthe
- Library, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Jennifer Neubauer
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Handan Noyan
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Sabine Oligschläger
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | | | - Dorothee Poehlchen
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Nadine Putzke
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Sabrina Roski
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Marie-Catherine Schaller
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Anja Schieferbein
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Benito Schlaak
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Robert Schmidt
- Institute for Laboratory Medicine, Clinical Chemistry and Molecular Diagnostics (ILM) of the Medical Faculty at the Leipzig University, Leipzig, Germany
| | | | - Hanna Maria Schmidt
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Anne Schrimpf
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Sylvia Stasch
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Maria Voss
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Annett Wiedemann
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Daniel S. Margulies
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Michael Gaebler
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- MindBrainBody Institute at the Berlin School of Mind and Brain, Humboldt-Universität Berlin, Berlin, Germany
- Leipzig Research Centre for Civilization Diseases LIFE, Leipzig University, Leipzig, Germany
| | - Arno Villringer
- Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- MindBrainBody Institute at the Berlin School of Mind and Brain, Humboldt-Universität Berlin, Berlin, Germany
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42
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Brantley JA, Luu TP, Nakagome S, Zhu F, Contreras-Vidal JL. Full body mobile brain-body imaging data during unconstrained locomotion on stairs, ramps, and level ground. Sci Data 2018; 5:180133. [PMID: 29989591 PMCID: PMC6038848 DOI: 10.1038/sdata.2018.133] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 04/20/2018] [Indexed: 02/03/2023] Open
Abstract
Human locomotion is a complex process that requires the integration of central and peripheral nervous signalling. Understanding the brain's involvement in locomotion is challenging and is traditionally investigated during locomotor imagination or observation. However, stationary imaging methods lack the ability to infer information about the peripheral and central signalling during actual task execution. In this report, we present a dataset containing simultaneously recorded electroencephalography (EEG), lower-limb electromyography (EMG), and full body motion capture recorded from ten able-bodied individuals. The subjects completed an average of twenty trials on an experimental gait course containing level-ground, ramps, and stairs. We recorded 60-channel EEG from the scalp and 4-channel EOG from the face and temples. Surface EMG was recorded from six muscle sites bilaterally on the thigh and shank. The motion capture system consisted of seventeen wireless IMUs, allowing for unconstrained ambulation in the experimental space. In this report, we present the rationale for collecting these data, a detailed explanation of the experimental setup, and a brief validation of the data quality.
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Affiliation(s)
- Justin A. Brantley
- Laboratory for Non-Invasive Brain Machine Interfaces, Department of Electrical & Computer Engineering, University of Houston, Houston, TX 77056, USA
| | - Trieu Phat Luu
- Laboratory for Non-Invasive Brain Machine Interfaces, Department of Electrical & Computer Engineering, University of Houston, Houston, TX 77056, USA
| | - Sho Nakagome
- Laboratory for Non-Invasive Brain Machine Interfaces, Department of Electrical & Computer Engineering, University of Houston, Houston, TX 77056, USA
| | - Fangshi Zhu
- Laboratory for Non-Invasive Brain Machine Interfaces, Department of Electrical & Computer Engineering, University of Houston, Houston, TX 77056, USA
| | - Jose L. Contreras-Vidal
- Laboratory for Non-Invasive Brain Machine Interfaces, Department of Electrical & Computer Engineering, University of Houston, Houston, TX 77056, USA
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43
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Mouček R, Vařeka L, Prokop T, Štěbeták J, Brůha P. Event-related potential data from a guess the number brain-computer interface experiment on school children. Sci Data 2017; 4:160121. [PMID: 28350376 PMCID: PMC5369320 DOI: 10.1038/sdata.2016.121] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 11/30/2016] [Indexed: 11/09/2022] Open
Abstract
Guess the number is a simple P300-based brain-computer interface experiment. Its aim is to ask the measured participant to pick a number between 1 and 9. Then, he or she is exposed to corresponding visual stimuli and experimenters try to guess the number thought while they are observing event-related potential waveforms on-line. 250 school-age children participated in the experiments that were carried out in elementary and secondary schools in the Czech Republic. Electroencephalographic data from three EEG channels (Fz, Cz, Pz) and stimuli markers were stored. Additional metadata about the participants were collected (gender, age, laterality, the number thought by the participant, the guess of the experimenters, and various interesting additional information). Consequently, we offer the largest publicly available odd-ball paradigm collection of datasets to neuroscientific and brain-computer interface community.
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Affiliation(s)
- R. Mouček
- NTIS—New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia, Univerzitní 8, Plzeň 306 14, Czech Republic
| | - L. Vařeka
- NTIS—New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia, Univerzitní 8, Plzeň 306 14, Czech Republic
| | - T. Prokop
- NTIS—New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia, Univerzitní 8, Plzeň 306 14, Czech Republic
| | - J. Štěbeták
- NTIS—New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia, Univerzitní 8, Plzeň 306 14, Czech Republic
| | - P. Brůha
- NTIS—New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia, Univerzitní 8, Plzeň 306 14, Czech Republic
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