Predicting individual variability in task-evoked brain activity in schizophrenia

The Prediction of Brain Activity from Connectivity: Advances and Applications

The human brain is composed of multiple, discrete, functionally specialized regions that are interconnected to form large-scale distributed networks. Using advanced brain-imaging methods and machine-learning analytical approaches, recent studies have demonstrated that regional brain activity during the performance of various cognitive tasks can be accurately predicted from patterns of task-independent brain connectivity. In this review article, we first present evidence for the predictability of brain activity from structural connectivity (i.e., white matter connections) and functional connectivity (i.e., temporally synchronized task-free activations). We then discuss the implications of such predictions to clinical populations, such as patients diagnosed with psychiatric disorders or neurologic diseases, and to the study of brain-behavior associations. We conclude that connectivity may serve as an infrastructure that dictates brain activity, and we pinpoint several open questions and directions for future research.

Characterizing the discriminability of visual categorical information in strongly connected voxels

Functional brain responses are strongly influenced by connectivity. Recently, we demonstrated a major example of this: category discriminability within occipitotemporal cortex (OTC) is enhanced for voxel sets that share strong functional connectivity to distal brain areas, relative to those that share lesser connectivity. That is, within OTC regions, sets of 'most-connected' voxels show improved multivoxel pattern discriminability for tool-, face-, and place stimuli relative to voxels with weaker connectivity to the wider brain. However, understanding whether these effects generalize to other domains (e.g. body perception network), and across different levels of the visual processing streams (e.g. dorsal as well as ventral stream areas) is an important extension of this work. Here, we show that this so-called connectivity-guided decoding (CGD) effect broadly generalizes across a wide range of categories (tools, faces, bodies, hands, places). This effect is robust across dorsal stream areas, but less consistent in earlier ventral stream areas. In the latter regions, category discriminability is generally very high, suggesting that extraction of category-relevant visual properties is less reliant on connectivity to downstream areas. Further, CGD effects are primarily expressed in a category-specific manner: For example, within the network of tool regions, discriminability of tool information is greater than non-tool information. The connectivity-guided decoding approach shown here provides a novel demonstration of the crucial relationship between wider brain connectivity and complex local-level functional responses at different levels of the visual processing streams. Further, this approach generates testable new hypotheses about the relationships between connectivity and local selectivity.

Predicting an individual's cerebellar activity from functional connectivity fingerprints

The cerebellum is gaining scientific attention as a key neural substrate of cognitive function; however, individual differences in the cerebellar organization have not yet been well studied. Individual differences in functional brain organization can be closely tied to individual differences in brain connectivity. 'Connectome Fingerprinting' is a modeling approach that predicts an individual's brain activity from their connectome. Here, we extend 'Connectome Fingerprinting' (CF) to the cerebellum. We examined functional MRI data from 160 subjects (98 females) of the Human Connectome Project young adult dataset. For each of seven cognitive task paradigms, we constructed CF models from task activation maps and resting-state cortico-cerebellar functional connectomes, using a set of training subjects. For each model, we then predicted task activation in novel individual subjects, using their resting-state functional connectomes. In each cognitive paradigm, the CF models predicted individual subject cerebellar activity patterns with significantly greater precision than did predictions from the group average task activation. Examination of the CF models revealed that the cortico-cerebellar connections that carried the most information were those made with the non-motor portions of the cerebral cortex. These results demonstrate that the fine-scale functional connectivity between the cerebral cortex and cerebellum carries important information about individual differences in cerebellar functional organization. Additionally, CF modeling may be useful in the examination of patients with cerebellar dysfunction, since model predictions require only resting-state fMRI data which is more easily obtained than task fMRI.

Generalizing prediction of task-evoked brain activity across datasets and populations

Predictions of task-based functional magnetic resonance imaging (fMRI) from task-free resting-state (rs) fMRI have gained popularity over the past decade. This method holds a great promise for studying individual variability in brain function without the need to perform highly demanding tasks. However, in order to be broadly used, prediction models must prove to generalize beyond the dataset they were trained on. In this work, we test the generalizability of prediction of task-fMRI from rs-fMRI across sites, MRI vendors and age-groups. Moreover, we investigate the data requirements for successful prediction. We use the Human Connectome Project (HCP) dataset to explore how different combinations of training sample sizes and number of fMRI datapoints affect prediction success in various cognitive tasks. We then apply models trained on HCP data to predict brain activations in data from a different site, a different MRI vendor (Phillips vs. Siemens scanners) and a different age group (children from the HCP-development project). We demonstrate that, depending on the task, a training set of approximately 20 participants with 100 fMRI timepoints each yields the largest gain in model performance. Nevertheless, further increasing sample size and number of timepoints results in significantly improved predictions, until reaching approximately 450-600 training participants and 800-1000 timepoints. Overall, the number of fMRI timepoints influences prediction success more than the sample size. We further show that models trained on adequate amounts of data successfully generalize across sites, vendors and age groups and provide predictions that are both accurate and individual-specific. These findings suggest that large-scale publicly available datasets may be utilized to study brain function in smaller, unique samples.

Activity flow mapping over probabilistic functional connectivity

Emerging evidence indicates that activity flow over resting-state network topology allows the prediction of task activations. However, previous studies have mainly adopted static, linear functional connectivity (FC) estimates as activity flow routes. It is unclear whether an intrinsic network topology that captures the dynamic nature of FC can be a better representation of activity flow routes. Moreover, the effects of between- versus within-network connections and tight versus loose (using rest baseline) task contrasts on the prediction of task-evoked activity across brain systems remain largely unknown. In this study, we first propose a probabilistic FC estimation derived from a dynamic framework as a new activity flow route. Subsequently, activity flow mapping was tested using between- and within-network connections separately for each region as well as using a set of tight task contrasts. Our results showed that probabilistic FC routes substantially improved individual-level activity flow prediction. Although it provided better group-level prediction, the multiple regression approach was more dependent on the length of data points at the individual-level prediction. Regardless of FC type, we consistently observed that between-network connections showed a relatively higher prediction performance in higher-order cognitive control than in primary sensorimotor systems. Furthermore, cognitive control systems exhibit a remarkable increase in prediction accuracy with tight task contrasts and a decrease in sensorimotor systems. This work demonstrates that probabilistic FC estimates are promising routes for activity flow mapping and also uncovers divergent influences of connectional topology and task contrasts on activity flow prediction across brain systems with different functional hierarchies.

Reduced homotopic interhemispheric connectivity in psychiatric disorders: evidence for both transdiagnostic and disorder specific features

There is considerable interest in the significance of structural and functional connections between the two brain hemispheres in terms of both normal function and in relation to psychiatric disorders. In recent years, many studies have used voxel mirrored homotopic connectivity analysis of resting state data to investigate the importance of connectivity between homotopic regions in the brain hemispheres in a range of neuropsychiatric disorders. The current review summarizes findings from these voxel mirrored homotopic connectivity studies in individuals with autism spectrum disorder, addiction, attention deficit hyperactivity disorder, anxiety and depression disorders, and schizophrenia, as well as disorders such as Alzheimer's disease, mild cognitive impairment, epilepsy, and insomnia. Overall, other than attention deficit hyperactivity disorder, studies across psychiatric disorders report decreased homotopic resting state functional connectivity in the default mode, attention, salience, sensorimotor, social cognition, visual recognition, primary visual processing, and reward networks, which are often associated with symptom severity and/or illness onset/duration. Decreased homotopic resting state functional connectivity may therefore represent a transdiagnostic marker for general psychopathology. In terms of disorder specificity, the extensive decreases in homotopic resting state functional connectivity in autism differ markedly from attention deficit hyperactivity disorder, despite both occurring during early childhood and showing extensive co-morbidity. A pattern of more posterior than anterior regions showing reductions in schizophrenia is also distinctive. Going forward, more studies are needed to elucidate the functions of these homotopic functional connections in both health and disorder and focusing on associations with general psychopathology, and not only on disorder specific symptoms.

Act natural: Functional connectivity from naturalistic stimuli fMRI outperforms resting-state in predicting brain activity

The search for an 'ideal' approach to investigate the functional connections in the human brain is an ongoing challenge for the neuroscience community. While resting-state functional magnetic resonance imaging (fMRI) has been widely used to study individual functional connectivity patterns, recent work has highlighted the benefits of collecting functional connectivity data while participants are exposed to naturalistic stimuli, such as watching a movie or listening to a story. For example, functional connectivity data collected during movie-watching were shown to predict cognitive and emotional scores more accurately than resting-state-derived functional connectivity. We have previously reported a tight link between resting-state functional connectivity and task-derived neural activity, such that the former successfully predicts the latter. In the current work we use data from the Human Connectome Project to demonstrate that naturalistic-stimulus-derived functional connectivity predicts task-induced brain activation maps more accurately than resting-state-derived functional connectivity. We then show that activation maps predicted using naturalistic stimuli are better predictors of individual intelligence scores than activation maps predicted using resting-state. We additionally examine the influence of naturalistic-stimulus type on prediction accuracy. Our findings emphasize the potential of naturalistic stimuli as a promising alternative to resting-state fMRI for connectome-based predictive modelling of individual brain activity and cognitive traits.

Subjective difficulty in a verbal recognition-based memory task: Exploring brain-behaviour relationships at the individual level in healthy young adults

The vast majority of fMRI studies of task-related brain activity utilize common levels of task demands and analyses that rely on the central tendencies of the data. This approach does not take into account perceived difficulty nor regional variations in brain activity between people. The results are findings of brain-behavior relationships that weaken as sample sizes increase. Participants of the current study included twenty-six healthy young adults evenly split between the sexes. The current work utilizes five parametrically modulated levels of memory load centered around each individual's predetermined working memory cognitive capacity. Principal components analyses (PCA) identified the group-level central tendency of the data. After removing the group effect from the data, PCA identified individual-level patterns of brain activity across the five levels of task demands. Expression of the group effect significantly differed between the sexes across all load levels. Expression of the individual level patterns demonstrated a significant load by sex interaction. Furthermore, expressions of the individual maps make better predictors of response time behavior than group-derived maps. We demonstrated that utilization of an individual's unique pattern of brain activity in response to increasing a task's perceived difficulty is a better predictor of brain-behavior relationships than study designs and analyses focused on identification of group effects. Furthermore, these methods facilitate exploration into how individual differences in patterns of brain activity relate to individual differences in behavior and cognition.

Predicting individual variability in task-evoked brain activity in schizophrenia

What goes wrong in a schizophrenia patient's brain that makes it so different from a healthy brain? In this study, we tested the hypothesis that the abnormal brain activity in schizophrenia is tightly related to alterations in brain connectivity. Using functional magnetic resonance imaging (fMRI), we demonstrated that both resting‐state functional connectivity and brain activity during the well‐validated N‐back task differed significantly between schizophrenia patients and healthy controls. Nevertheless, using a machine‐learning approach we were able to use resting‐state functional connectivity measures extracted from healthy controls to accurately predict individual variability in the task‐evoked brain activation in the schizophrenia patients. The predictions were highly accurate, sensitive, and specific, offering novel insights regarding the strong coupling between brain connectivity and activity in schizophrenia. On a practical perspective, these findings may allow to generate task activity maps for clinical populations without the need to actually perform any tasks, thereby reducing patients inconvenience while saving time and money.