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Hernández-Juárez G, Barroso J, Vásquez-Espinal A, Ortíz-Chi F, Tiznado W, Murillo F, Merino G. Breaking the plane: B 5H 5 is a three-dimensional structure. Phys Chem Chem Phys 2024; 26:8089-8093. [PMID: 38381157 DOI: 10.1039/d4cp00029c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
In this study, we delved into the structure of B5H5 and questioned some of its accepted assumptions. By exploring the potential energy surface, we found a new three-dimensional structure as the global minimum. This finding is in contrast with the previously hypothesized planar and cage-like models. Our exploration extends to the kinetic stability of various B5H5 isomers, offering insights into the dynamic behavior of these molecules.
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Affiliation(s)
- Gerardo Hernández-Juárez
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Jorge Barroso
- Department of Chemistry, Clemson University, Clemson, South Carolina 29625, USA
| | - Alejandro Vásquez-Espinal
- Química y Farmacia, Facultad de Ciencias de la Salud, Universidad Arturo Prat, Casilla 121, Iquique 1100000, Chile
| | - Filiberto Ortíz-Chi
- CONAHCYT-División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, Mexico
| | - William Tiznado
- Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
| | - Fernando Murillo
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
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2
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Balan JL, Morato-Márquez JA, Torres-Torres JG, Cabellos JL, Ortiz-Chi F. Structural and optical properties of the Ag n-tyrosine complexes ( n = 3-12): a density functional theory study. ROYAL SOCIETY OPEN SCIENCE 2023; 10:230908. [PMID: 38094276 PMCID: PMC10716649 DOI: 10.1098/rsos.230908] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 11/21/2023] [Indexed: 01/11/2024]
Abstract
We study the optical properties of Agn (n = 3-12) neutral clusters and their coordination with a tyrosine (Tyr) molecule. A global search strategy coupled with density functional theory (DFT) computations explored the potential energy surface. Adsorption energy calculations predicted that Tyr coordination stabilizes the metal clusters, favouring the Agn-Tyr complexes with an even number of silver atoms. For the Agn low-lying isomers, the general shape and the major transitions of the calculated time dependent-DFT (TD-DFT) absorption spectra align with those of previous reports measured in an argon environment. We use the analysis of non-covalent interactions to identify the specific interactions between each silver cluster and functional groups of Tyr. The TD-DFT absorption spectra for the Agn-Tyr complexes showed that Tyr significantly modifies the optical properties of the coordinated silver clusters and affects the smaller systems to a greater extent. The optical absorption results of the bare Agn clusters and the Agn-Tyr complexes are compared and discussed in detail.
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Affiliation(s)
- José Luis Balan
- División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
| | - José Aminadat Morato-Márquez
- División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
- Tecnológico Nacional de México, Instituto Tecnológico de Villahermosa, Departamento de Ciencias de la Tierra, Villahermosa, 86010, Tabasco, México
| | - José Gilberto Torres-Torres
- División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
| | - José Luis Cabellos
- Universidad Politécnica de Tapachula, Coordinación de Investigación y Desarrollo Tecnológico, Tapachula 30830, Chiapas, México
| | - Filiberto Ortiz-Chi
- CONAHCYT-División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, México
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3
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Hernández-Juárez G, Vásquez-Espinal A, Murillo F, Quintal A, Ortíz-Chi F, Zarate X, Barroso J, Merino G. Unveiling the electronic and structural consequences of removing two electrons from B 12H 122. Dalton Trans 2023; 52:17398-17406. [PMID: 37942919 DOI: 10.1039/d3dt02652c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
The notion that a regular icosahedron is unattainable in neutral B12H12 has persisted for nearly 70 years. This is because 24 valence electrons are used for B-H bonds, while another 24 electrons are necessary to maintain the deltahedron, unlike the 26 used in the dianion. According to Wade-Mingos rules, the neutral system should be a deltahedron with a capped face. Nevertheless, our exploration of the potential energy surface of B12H12 reveals that the global minimum is a closed-shell form with an H2 unit attached to a boron vertex of B12H10, preserving the deltahedral boron skeleton.
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Affiliation(s)
- Gerardo Hernández-Juárez
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo, Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Alejandro Vásquez-Espinal
- Química y Farmacia, Facultad de Ciencias de la Salud, Universidad Arturo Prat, Casilla 121, Iquique 1100000, Chile
| | - Fernando Murillo
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo, Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Alan Quintal
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo, Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Filiberto Ortíz-Chi
- CONAHCYT-División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán 86690, Tabasco, Mexico
| | - Ximena Zarate
- Instituto de Ciencias Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, Av. Pedro de Valdivia 425, Santiago, Chile
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo, Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
- Department of Chemistry, University of South Dakota, Vermillion, South Dakota 57069, USA
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo, Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
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4
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Zhang CJ, Ortíz-Chi F, Xu XL, Xu HG, Merino G, Zheng WJ. Reconsidering the Structures of C 2 Al 4 - and C 2 Al 5. Chemistry 2023; 29:e202301338. [PMID: 37498677 DOI: 10.1002/chem.202301338] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 07/24/2023] [Accepted: 07/26/2023] [Indexed: 07/29/2023]
Abstract
The study of C2 Al4 -/0 and C2 Al5 -/0 was conducted using anion photoelectron spectroscopy and quantum chemical computations. The present findings reveal that C2 Al4 - has a boat-like structure, with a single C2 unit surrounded by four aluminum atoms. In contrast, the neutral C2 Al4 species adopts a D2h planar structure with two planar tetracoordinate carbon (ptC) units, consistent with previous reports. Furthermore, the global minimum isomer of C2 Al5 - adopts a D3h symmetry, where the C2 unit interacts with five aluminum atoms. It was also found that a lower symmetry structure of C2 Al5 - , where all five aluminum atoms are located on the same side of the C2 unit, albeit slightly higher in energy compared to the D3h structure. These computations show that the D3h structure of C2 Al5 - is highly stable, exhibiting a large HOMO-LUMO gap.
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Affiliation(s)
- Chao-Jiang Zhang
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Filiberto Ortíz-Chi
- Conahcyt-División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán, 86690, Tabasco, México
| | - Xi-Ling Xu
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hong-Guang Xu
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua Carretera a Progreso Apdo. Postal 73, Cordemex, 97310, Mérida, Yucatán, México
| | - Wei-Jun Zheng
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
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5
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Yáñez M, Ortíz-Chi F, Merino G, Alkorta I. Dismantlement of ammonia upon interaction with Be n (n ≤ 10) clusters. J Comput Chem 2023; 44:159-167. [PMID: 35297069 PMCID: PMC10078787 DOI: 10.1002/jcc.26843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 03/01/2022] [Accepted: 03/02/2022] [Indexed: 12/31/2022]
Abstract
The interaction of ammonia with Ben (n < 1-10) clusters has been investigated by density functional theory and ab initio calculations. The main conclusion is that, regardless of the size of the Be cluster, neither the structure of ammonia nor that of the Be clusters are preserved due to a systematic dissociation of its NH bonds and a spontaneous H-shift toward the available Be atoms. This H migration not only leads to rather stable BeH bonds, but dramatically enhances the strength of the BeN bonds as well. Accordingly, the maximum stability is found for the interaction with the beryllium trimer, leading to a complex with three NBe and three BeH bonds. Another maximum in stability, although lower than that reached for n = 3, is found for the Be heptamer, since from n = 6, a new NBe bond is formed, so that complexes from n = 6 to n = 10 are characterized by the formation of a NBe4 moiety, whose stability reaches a maximum at n = 7. The bonding characteristics of the different species formed are analyzed by means of AIM, NBO, ELF and AdNDP approaches.
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Affiliation(s)
- Manuel Yáñez
- Departamento de Química, Módulo 13, Facultad de Ciencias and Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid, Spain
| | - Filiberto Ortíz-Chi
- CONACYT-Universidad Juárez Autónoma de Tabasco, Centro de Investigación de Ciencia y Tecnología Aplicada de Tabasco, Cunduacán, Tabasco, Mexico
| | - Gabriel Merino
- Centro Investigación & Estudios Avanzados, Unidad Mérida, Dept. Física Aplicada, Merida, Mexico
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Madrid, Spain
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6
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Vargas-Caamal A, Dzib E, Ortiz-Chi F, Restrepo A, Merino G. Acid Dissociation in (HX) n (H 2 O) n Clusters (X=F, Cl, Br, I; n=2, 3). Chemphyschem 2023; 24:e202200582. [PMID: 36198655 DOI: 10.1002/cphc.202200582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 09/29/2022] [Indexed: 01/19/2023]
Abstract
In this work, we analyze the interactions between two or three hydrogen halide molecules and the same number of water moieties through a systematic exploration of their potential energy surfaces. Our results indicate that the most stable HF and HCl aggregates do not experience dissociation of any of the acid fragments, even with three water molecules. In contrast, in the HBr and HI clusters, one of the acid fragments does dissociate. While the global minimum of (HBr)3 (H2 O)3 is a hydrogen-bridged bihalide anion (BrHBr- ), which is persistent at temperatures up to 203 K, the lowest energy structure of (HI)3 (H2 O)3 has a separated ion pair, but the motif with a bihalide anion (IHI- ) is only 0.2 kcal mol-1 above the global minimum. Among the more stable structures is a broad spectrum of contacts, including water⋯water, HX⋯water, and HX⋯HX hydrogen bonds, halogen bonds, ionic and long-range X⋯H contacts.
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Affiliation(s)
- Alba Vargas-Caamal
- Unidad Profesional Interdisciplinaria de Ingeniería Campus Guanajuato, Instituto Politécnico Nacional. Av. Mineral de Valenciana No. 200 Fracc. Industrial Puerto Interior, C.P. 36275, Silao de la Victoria, Guanajuato, México.,Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Eugenia Dzib
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Filiberto Ortiz-Chi
- Cátedra CONACYT, División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, C.P. 86690, Cunduacán, Tabasco, México
| | - Albeiro Restrepo
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52-21, Medellín, Colombia
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
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7
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First Principal Study of Interaction of Copper Doped Gold Nanoclusters with Glycine. INORG CHEM COMMUN 2023. [DOI: 10.1016/j.inoche.2023.110435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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8
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Bai LX, Orozco-Ic M, Zarate X, Sundholm D, Pan S, Guo JC, Merino G. B 3Al 4+: A Three-Dimensional Molecular Reuleaux Triangle. Molecules 2022; 27:7407. [PMID: 36364234 PMCID: PMC9656129 DOI: 10.3390/molecules27217407] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 10/19/2022] [Accepted: 10/23/2022] [Indexed: 12/02/2023] Open
Abstract
We systematically explore the potential energy surface of the B3Al4+ combination of atoms. The putative global minimum corresponds to a structure formed by an Al4 square facing a B3 triangle. Interestingly, the dynamical behavior can be described as a Reuleaux molecular triangle since it involves the rotation of the B3 triangle at the top of the Al4 square. The molecular dynamics simulations, corroborating with the very small rotational barriers of the B3 triangle, show its nearly free rotation on the Al4 ring, confirming the fluxional character of the cluster. Moreover, while the chemical bonding analysis suggests that the multicenter interaction between the two fragments determines its fluxionality, the magnetic response analysis reveals this cluster as a true and fully three-dimensional aromatic system.
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Affiliation(s)
- Li-Xia Bai
- Nanocluster Laboratory, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Mesías Orozco-Ic
- Department of Chemistry, University of Helsinki, A. I. Virtasen Aukio 1, P.O. Box 55, FIN-00014 Helsinki, Finland
| | - Ximena Zarate
- Instituto de Ciencias Químicas Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, Av. Pedro de Valdivia 425, Santiago 7500912, Chile
| | - Dage Sundholm
- Department of Chemistry, University of Helsinki, A. I. Virtasen Aukio 1, P.O. Box 55, FIN-00014 Helsinki, Finland
| | - Sudip Pan
- Fachbereich Chemie, Philipps-Universitt Marburg Hans-Meerwein-Straße, 35043 Marburg, Germany
| | - Jin-Chang Guo
- Nanocluster Laboratory, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo., Postal 73, Cordemex, Merida 97310, Mexico
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9
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Bahota AS, Singh KK, Kumar R, Tandon P. Ab-initio simulation of the interaction of gold nanoclusters with glycine. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133447] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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10
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Thimmakondu VS, Sinjari A, Inostroza D, Vairaprakash P, Thirumoorthy K, Roy S, Anoop A, Tiznado W. Why an integrated approach between search algorithms and chemical intuition is necessary? Phys Chem Chem Phys 2022; 24:11680-11686. [PMID: 35506427 DOI: 10.1039/d2cp00315e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Though search algorithms are appropriate tools for identifying low-energy isomers, fixing several constraints seems to be a fundamental prerequisite to successfully running any structural search program. This causes some potential setbacks as far as identifying all possible isomers, close to the lowest-energy isomer, for any elemental composition. The number of explored candidates, the choice of method, basis set, and availability of CPU time needed to analyze the various initial test structures become necessary restrictions in resolving the issues of structural isomerism reasonably. While one could arrive at new structures through chemical intuition, reproducing or achieving those exact same structures requires increasing the number of variables in any given program, which causes further constraints in exploring the potential energy surface in a reasonable amount of time. Thus, it is emphasized here that an integrated approach between search algorithms and chemical intuition is necessary by taking the C12O2Mg2 system as an example. Our initial search through the AUTOMATON program yielded 1450 different geometries. However, through chemical intuition, we found eighteen new geometries within 40.0 kcal mol-1 at the PBE0-D3/def2-TZVP level. These results indirectly emphasize that an integrated approach between search algorithms and chemical intuition is necessary to further our knowledge in chemical space for any given elemental composition.
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Affiliation(s)
- Venkatesan S Thimmakondu
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA.
| | - Aland Sinjari
- School of Mathematics, Biological, Exercise & Physical Sciences, San Diego Miramar College, San Diego, CA, 92126-2910, USA
| | - Diego Inostroza
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Química, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile. .,Universidad Andres Bello, Programa de Doctorado en Fisicoquímica Molecular, Facultad de Ciencias Exactas, Santiago, Chile
| | - Pothiappan Vairaprakash
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur 613 401, Tamil Nadu, India
| | - Krishnan Thirumoorthy
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore - 632 014, Tamil Nadu, India
| | - Saikat Roy
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, West Bengal, India.
| | - Anakuthil Anoop
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721 302, West Bengal, India.
| | - William Tiznado
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Química, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile.
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11
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Buelna-García CE, Castillo-Quevedo C, Quiroz-Castillo JM, Paredes-Sotelo E, Cortez-Valadez M, Martin-del-Campo-Solis MF, López-Luke T, Utrilla-Vázquez M, Mendoza-Wilson AM, Rodríguez-Kessler PL, Vazquez-Espinal A, Pan S, de Leon-Flores A, Mis-May JR, Rodríguez-Domínguez AR, Martínez-Guajardo G, Cabellos JL. Relative Populations and IR Spectra of Cu38 Cluster at Finite Temperature Based on DFT and Statistical Thermodynamics Calculations. Front Chem 2022; 10:841964. [PMID: 35300385 PMCID: PMC8921525 DOI: 10.3389/fchem.2022.841964] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 01/24/2022] [Indexed: 11/13/2022] Open
Abstract
The relative populations of Cu38 isomers depend to a great extent on the temperature. Density functional theory and nanothermodynamics can be combined to compute the geometrical optimization of isomers and their spectroscopic properties in an approximate manner. In this article, we investigate entropy-driven isomer distributions of Cu38 clusters and the effect of temperature on their IR spectra. An extensive, systematic global search is performed on the potential and free energy surfaces of Cu38 using a two-stage strategy to identify the lowest-energy structure and its low-energy neighbors. The effects of temperature on the populations and IR spectra are considered via Boltzmann factors. The computed IR spectrum of each isomer is multiplied by its corresponding Boltzmann weight at finite temperature. Then, they are summed together to produce a final temperature-dependent, Boltzmann-weighted spectrum. Our results show that the disordered structure dominates at high temperatures and the overall Boltzmann-weighted spectrum is composed of a mixture of spectra from several individual isomers.
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Affiliation(s)
- Carlos Emiliano Buelna-García
- Departamento de Investigación en Polímeros y Materiales, Universidad de Sonora, Hermosillo, Mexico
- Organización Científica y Tecnológica del Desierto, Hermosillo, Mexico
| | - Cesar Castillo-Quevedo
- Departamento de Fundamentos del Conocimiento, Centro Universitario del Norte, Universidad de Guadalajara, Colotlán, Mexico
| | | | - Edgar Paredes-Sotelo
- Departamento de Investigación en Polímeros y Materiales, Universidad de Sonora, Hermosillo, Mexico
| | - Manuel Cortez-Valadez
- CONACYT-Departamento de Investigación en Física, Universidad de Sonora, Hermosillo, Mexico
| | | | - Tzarara López-Luke
- Instituto de Investigación en Metalurgia y Materiales, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, Morelia, Mexico
| | | | | | - Peter L. Rodríguez-Kessler
- Laboratorio de Química Inorgánica y Materiales Moleculares, Facultad de Ingeniería, Universidad Autonoma de Chile, Santiago, Chile
| | - Alejandro Vazquez-Espinal
- Comput. Theor. Chem. Group Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, Santiago, Chile
| | - Sudip Pan
- Fachbereich Chemie, Philipps-Universität Marburg, Marburg, Germany
| | - Aned de Leon-Flores
- Departamento de Ciencias Químico Biologicas, Universidad de Sonora, Hermosillo, Mexico
| | | | | | - Gerardo Martínez-Guajardo
- Unidad Académica de Ciencias Químicas, Área de Ciencias de la Salud, Universidad Autónoma de Zacatecas, Zacatecas, Mexico
- *Correspondence: Gerardo Martinez-Guajardo, ; Jose Luis Cabellos,
| | - Jose Luis Cabellos
- Universidad Politécnica de Tapachula, Tapachula, Mexico
- *Correspondence: Gerardo Martinez-Guajardo, ; Jose Luis Cabellos,
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12
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Effects of Temperature on Enantiomerization Energy and Distribution of Isomers in the Chiral Cu 13 Cluster. Molecules 2021; 26:molecules26185710. [PMID: 34577181 PMCID: PMC8471510 DOI: 10.3390/molecules26185710] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 09/02/2021] [Accepted: 09/17/2021] [Indexed: 11/21/2022] Open
Abstract
In this study, we report the lowest energy structure of bare Cu13 nanoclusters as a pair of enantiomers at room temperature. Moreover, we compute the enantiomerization energy for the interconversion from minus to plus structures in the chiral putative global minimum for temperatures ranging from 20 to 1300 K. Additionally, employing nanothermodynamics, we compute the probabilities of occurrence for each particular isomer as a function of temperature. To achieve that, we explore the free energy surface of the Cu13 cluster, employing a genetic algorithm coupled with density functional theory. Moreover, we discuss the energetic ordering of isomers computed with various density functionals. Based on the computed thermal population, our results show that the chiral putative global minimum strongly dominates at room temperature.
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13
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Buelna-García CE, Robles-Chaparro E, Parra-Arellano T, Quiroz-Castillo JM, del-Castillo-Castro T, Martínez-Guajardo G, Castillo-Quevedo C, de-León-Flores A, Anzueto-Sánchez G, Martin-del-Campo-Solis MF, Mendoza-Wilson AM, Vásquez-Espinal A, Cabellos JL. Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be 4B 8 Cluster at Different Temperatures. Molecules 2021; 26:3953. [PMID: 34203563 PMCID: PMC8271876 DOI: 10.3390/molecules26133953] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 06/18/2021] [Accepted: 06/22/2021] [Indexed: 11/16/2022] Open
Abstract
Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglected, even though functional materials work at finite temperatures. In the present study, the probability of the occurrence of one particular Be4B8 isomer at temperature T is estimated by employing Gibbs free energy computed within the framework of quantum statistical mechanics and nanothermodynamics. To identify a list of all possible low-energy chiral and achiral structures, an exhaustive and efficient exploration of the potential/free energy surfaces is carried out using a multi-level multistep global genetic algorithm search coupled with DFT. In addition, we discuss the energetic ordering of structures computed at the DFT level against single-point energy calculations at the CCSD(T) level of theory. The total VCD/IR spectra as a function of temperature are computed using each isomer's probability of occurrence in a Boltzmann-weighted superposition of each isomer's spectrum. Additionally, we present chemical bonding analysis using the adaptive natural density partitioning method in the chiral putative global minimum. The transition state structures and the enantiomer-enantiomer and enantiomer-achiral activation energies as a function of temperature evidence that a change from an endergonic to an exergonic type of reaction occurs at a temperature of 739 K.
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Affiliation(s)
- Carlos Emiliano Buelna-García
- Departamento de Investigación en Polímeros y Materiales, Edificio 3G, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico; (C.E.B.-G.); (J.M.Q.-C.); (T.d.-C.-C.)
- Organización Científica y Tecnológica del Desierto, Hermosillo 83150, Sonora, Mexico
| | - Eduardo Robles-Chaparro
- Departamento de Ciencias Químico Biologicas, Edificio 5A, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico; (E.R.-C.); (T.P.-A.); (A.d.-L.-F.)
| | - Tristan Parra-Arellano
- Departamento de Ciencias Químico Biologicas, Edificio 5A, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico; (E.R.-C.); (T.P.-A.); (A.d.-L.-F.)
| | - Jesus Manuel Quiroz-Castillo
- Departamento de Investigación en Polímeros y Materiales, Edificio 3G, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico; (C.E.B.-G.); (J.M.Q.-C.); (T.d.-C.-C.)
| | - Teresa del-Castillo-Castro
- Departamento de Investigación en Polímeros y Materiales, Edificio 3G, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico; (C.E.B.-G.); (J.M.Q.-C.); (T.d.-C.-C.)
| | - Gerardo Martínez-Guajardo
- Unidad Académica de Ciencias Químicas, Área de Ciencias de la Salud, Universidad Autónomade Zacatecas, Km. 6 Carretera Zacatecas-Guadalajara s/n, Ejido La Escondida C.P., Zacatecas 98160, Zac, Mexico;
| | - Cesar Castillo-Quevedo
- Departamento de Fundamentos del Conocimiento, Centro Universitario del Norte, Universidad de Guadalajara, Carretera Federal No. 23, Km. 191, C.P., Colotlán 46200, Jalisco, Mexico; (C.C.-Q.); (M.F.M.-d.-C.-S.)
| | - Aned de-León-Flores
- Departamento de Ciencias Químico Biologicas, Edificio 5A, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico; (E.R.-C.); (T.P.-A.); (A.d.-L.-F.)
| | | | - Martha Fabiola Martin-del-Campo-Solis
- Departamento de Fundamentos del Conocimiento, Centro Universitario del Norte, Universidad de Guadalajara, Carretera Federal No. 23, Km. 191, C.P., Colotlán 46200, Jalisco, Mexico; (C.C.-Q.); (M.F.M.-d.-C.-S.)
| | - Ana Maria Mendoza-Wilson
- Coordinación de Tecnología de Alimentos de Origen Vegetal, CIAD, A.C., Carretera Gustavo Enrique Astiazarán Rosas, No. 46, Hermosillo 83304, Sonora, Mexico;
| | - Alejandro Vásquez-Espinal
- Computational and Theoretical Chemistry Group Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, Republica 498, Santiago 8370035, Chile;
| | - Jose Luis Cabellos
- Departamento de Investigación en Física, Edificio 3M, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico
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14
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Wang MH, Orozco-Ic M, Leyva-Parra L, Tiznado W, Barroso J, Ding YH, Cui ZH, Merino G. Planar Tetracoordinate Carbons in Allene-Type Structures. J Phys Chem A 2021; 125:3009-3014. [PMID: 33797250 DOI: 10.1021/acs.jpca.1c02002] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The exhaustive exploration of the potential energy surfaces of CE2M2 (E = Si-Pb; M = Li and Na) revealed seven global minima containing a planar tetracoordinate carbon (ptC). The design, based on a π-localization strategy, resulted in a ptC with two double bonds forming a linear or a bent allene-type E═C═E motif. The magnetic response of the bent E═C═E fragments support a σ-aromaticity. The bonding analysis indicated that the ptCs form C-E covalent bonds and C-M electrostatic interactions.
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Affiliation(s)
- Meng-Hui Wang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, P. R. China
| | - Mesías Orozco-Ic
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km. 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, Mérida, Yucatán, México
| | - Luis Leyva-Parra
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
| | - William Tiznado
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km. 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, Mérida, Yucatán, México
| | - Yi-Hong Ding
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry and Materials Engineering, Wenzhou University, Wenzhou 325035, P. R. China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, P. R. China.,Beijing National Laboratory for Molecular Sciences, Beijing 100190, P. R. China
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km. 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, Mérida, Yucatán, México
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15
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Leyva-Parra L, Diego L, Yañez O, Inostroza D, Barroso J, Vásquez-Espinal A, Merino G, Tiznado W. Planar Hexacoordinate Carbons: Half Covalent, Half Ionic. Angew Chem Int Ed Engl 2021; 60:8700-8704. [PMID: 33527696 DOI: 10.1002/anie.202100940] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Indexed: 11/06/2022]
Abstract
Herein, the first global minima containing a planar hexacoordinate carbon (phC) atom are reported. The fifteen structures belong to the CE3 M3 + (E=S-Te and M=Li-Cs) series and satisfy both geometric and electronic criteria to be considered as a true phC. The design strategy consisted of replacing oxygen in the D3h CO3 Li3 + structure with heavy and less electronegative chalcogens, inducing a negative charge on the C atom and an attractive electrostatic interaction between C and the alkali-metal cations. The chemical bonding analyses indicate that carbon is covalently bonded to three chalcogens and ionically connected to the three alkali metals.
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Affiliation(s)
- Luis Leyva-Parra
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
| | - Luz Diego
- Escuela Profesional de Química, Facultad de Ciencias Naturales, Universidad Nacional Federico Villarreal, Jr. Río Chepén 290, El Agustino, Lima, Perú
| | - Osvaldo Yañez
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile.,Center of New Drugs for Hypertension (CENDHY), Santiago, Chile
| | - Diego Inostroza
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km. 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, Mérida, Yuc., México
| | - Alejandro Vásquez-Espinal
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km. 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, Mérida, Yuc., México
| | - William Tiznado
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, República 498, Santiago, Chile
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16
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Leyva‐Parra L, Diego L, Yañez O, Inostroza D, Barroso J, Vásquez‐Espinal A, Merino G, Tiznado W. Planar Hexacoordinate Carbons: Half Covalent, Half Ionic. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202100940] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Luis Leyva‐Parra
- Computational and Theoretical Chemistry Group Departamento de Ciencias Químicas Facultad de Ciencias Exactas Universidad Andres Bello República 498 Santiago Chile
| | - Luz Diego
- Escuela Profesional de Química Facultad de Ciencias Naturales Universidad Nacional Federico Villarreal Jr. Río Chepén 290, El Agustino Lima Perú
| | - Osvaldo Yañez
- Computational and Theoretical Chemistry Group Departamento de Ciencias Químicas Facultad de Ciencias Exactas Universidad Andres Bello República 498 Santiago Chile
- Center of New Drugs for Hypertension (CENDHY) Santiago Chile
| | - Diego Inostroza
- Computational and Theoretical Chemistry Group Departamento de Ciencias Químicas Facultad de Ciencias Exactas Universidad Andres Bello República 498 Santiago Chile
| | - Jorge Barroso
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex Mérida Yuc. México
| | - Alejandro Vásquez‐Espinal
- Computational and Theoretical Chemistry Group Departamento de Ciencias Químicas Facultad de Ciencias Exactas Universidad Andres Bello República 498 Santiago Chile
| | - Gabriel Merino
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex Mérida Yuc. México
| | - William Tiznado
- Computational and Theoretical Chemistry Group Departamento de Ciencias Químicas Facultad de Ciencias Exactas Universidad Andres Bello República 498 Santiago Chile
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17
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Castillo-Toraya G, Orozco-Ic M, Dzib E, Zarate X, Ortíz-Chi F, Cui ZH, Barroso J, Merino G. Planar tetracoordinate fluorine atoms. Chem Sci 2021; 12:6699-6704. [PMID: 34040744 PMCID: PMC8132929 DOI: 10.1039/d1sc01325d] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Accepted: 04/07/2021] [Indexed: 11/21/2022] Open
Abstract
Among the list of planar tetracoordinate atoms, fluorine is missing. So far, there are no theoretical or experimental reports suggesting their existence. Herein, we introduce the first six combinations (FIn4 +, FTl4 +, FGaIn3 +, FIn2Tl2 +, FIn3Tl+, and FInTl3 +) whose global minima contain a planar tetracoordinate fluorine. The bonding analyses indicate that the interactions between the fluorine and the peripheral atoms are significantly electrostatic, which is also reflected in the electronic delocalization. As opposed to other planar tetracoordinate systems with carbon, nitrogen, or oxygen atoms, the fluorine in the ptFs does not act as a σ-acceptor, restraining any back-donation. On the other hand, σ-electrons show a diatropic response, which would characterize these clusters as σ-aromatic.
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Affiliation(s)
- Gabriela Castillo-Toraya
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
| | - Mesías Orozco-Ic
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
| | - Eugenia Dzib
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
| | - Ximena Zarate
- Instituto de Ciencias Químicas Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile Santiago Chile
| | - Filiberto Ortíz-Chi
- CONACYT-Universidad Juárez Autónoma de Tabasco, Centro de Investigación de Ciencia y Tecnología Aplicada de Tabasco Cunduacán 86690 Tabasco México
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University Changchun 130012 China
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida Mérida Yucatán México
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18
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Rodríguez-Kessler PL, Rodríguez-Domínguez AR, Muñoz-Castro A. Systematic cluster growth: a structure search method for transition metal clusters. Phys Chem Chem Phys 2021; 23:4935-4943. [DOI: 10.1039/d0cp06179d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The systematic cluster growth (SCG) method is a biased structure search strategy based on a seeding process for investigating the structural evolution and growth pattern of transition metal clusters.
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Affiliation(s)
- Peter L. Rodríguez-Kessler
- Grupo de Química Inorgánica y Materiales Moleculares
- Facultad de Ingeniería
- Universidad Autónoma de Chile
- Santiago
- Chile
| | | | - Alvaro Muñoz-Castro
- Grupo de Química Inorgánica y Materiales Moleculares
- Facultad de Ingeniería
- Universidad Autónoma de Chile
- Santiago
- Chile
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19
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Abstract
Dissociation pathways of the global minimum geometry of Si2C5H2 with a planar tetracoordinate carbon (ptC) atom, 2,7-disilatricyclo[4.1.0.01,3]hept-2,4,6-trien-2,7-diyl (1), have been theoretically investigated using density functional theory and coupled-cluster (CC) methods. Dissociation of Si-C bond connected to the ptC atom leads to the formation of 4,7-disilabicyclo[4.1.0]hept-1(6),4(5)-dien-2-yn-7-ylidene (4) through a single transition state. Dissociation of C-C bond connected to the ptC atom leads to an intermediate with two identical transition states and leads back to 1 itself. Simultaneous breaking of both Si-C and C-C bonds leads to an acyclic transition state, which forms an acyclic product, cis-1,7-disilahept-1,2,3,5,6-pentaen-1,7-diylidene (19). Overall, two different products, four transition states, and an intermediate have been identified at the B3LYP/6-311++G(2d,2p) level of theory. Intrinsic reaction coordinate calculations have also been done at the latter level to confirm the isomerization pathways. CC calculations have been done at the CCSD(T)/cc-pVTZ level of theory for all minima. Importantly, all reaction profiles for 1 are found be endothermic in Si2C5H2. These results are in stark contrast compared to the structurally similar and isovalent lowest-energy isomer of C7H2 with a ptC atom as the overall reaction profiles there have been found to be exothermic. The activation energies for Si-C, C-C, and Si-C/C-C breaking are found to be 30.51, 64.05, and 61.85 kcal mol−1, respectively. Thus, it is emphasized here that 1 is a kinetically stable molecule. However, it remains elusive in the laboratory to date. Therefore, energetic and spectroscopic parameters have been documented here, which may be of relevance to molecular spectroscopists in identifying this key anti-van’t-Hoff-Le Bel molecule.
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20
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Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be 6B 11- Flux-Ional Cluster. MATERIALS 2020; 14:ma14010112. [PMID: 33383889 PMCID: PMC7796227 DOI: 10.3390/ma14010112] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 12/23/2020] [Accepted: 12/24/2020] [Indexed: 02/06/2023]
Abstract
The starting point to understanding cluster properties is the putative global minimum and all the nearby local energy minima; however, locating them is computationally expensive and difficult. The relative populations and spectroscopic properties that are a function of temperature can be approximately computed by employing statistical thermodynamics. Here, we investigate entropy-driven isomers distribution on Be6B11− clusters and the effect of temperature on their infrared spectroscopy and relative populations. We identify the vibration modes possessed by the cluster that significantly contribute to the zero-point energy. A couple of steps are considered for computing the temperature-dependent relative population: First, using a genetic algorithm coupled to density functional theory, we performed an extensive and systematic exploration of the potential/free energy surface of Be6B11− clusters to locate the putative global minimum and elucidate the low-energy structures. Second, the relative populations’ temperature effects are determined by considering the thermodynamic properties and Boltzmann factors. The temperature-dependent relative populations show that the entropies and temperature are essential for determining the global minimum. We compute the temperature-dependent total infrared spectra employing the Boltzmann factor weighted sums of each isomer’s infrared spectrum and find that at finite temperature, the total infrared spectrum is composed of an admixture of infrared spectra that corresponds to the spectra of the lowest-energy structure and its isomers located at higher energies. The methodology and results describe the thermal effects in the relative population and the infrared spectra.
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21
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On the search of small Cu-Ru atomically precise Superatoms. Cu10Ru cluster as a stable 18-ve endohedral structure. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137721] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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22
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Hernández-Juárez G, Ravell E, Arcudia J, Zarate X, Cui ZH, Merino G, Barroso J. Structural effects of alkali-metals on the B 12 skeleton. Phys Chem Chem Phys 2020; 22:17344-17350. [PMID: 32697205 DOI: 10.1039/d0cp02750b] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
After an exhaustive exploration of the potential energy surface of B12E- and B12E2 (E = Li-Cs) systems, it was found that for the anionic series, a cage-type and a quasi-planar structure (very similar to the naked B12 cluster) compete to be the putative global minimum. For neutral systems, competition arises between the quasi-planar cluster and a double-ring with the alkali-metals on the highest-symmetry axis. The chemical bonding analyses show that for the entire series, the interaction, predominantly electrostatic, is essentially indistinguishable regardless of the alkali-metal and insufficient for determining the isomeric preference. The isomerization energy decomposition analysis (IEDA) reveals that in the anions, the structural change in the lighter complexes is possible because of the relatively low energy required for the boron skeleton deformation, as opposed to the case of heavy metals. In the case of the neutral systems, the factor determining one isomer over the other corresponds to that of the energy deformation of the alkali-metal dimer.
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Affiliation(s)
- Gerardo Hernández-Juárez
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua Carretera a Progreso, Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, Mexico.
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23
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Thirumoorthy K, Cooksy AL, Thimmakondu VS. Si 2C 5H 2 isomers - search algorithms versus chemical intuition. Phys Chem Chem Phys 2020; 22:5865-5872. [PMID: 32108184 DOI: 10.1039/c9cp06145b] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The pros and cons of using search algorithms alone in identifying new geometries have been discussed by using the Si2C5H2 elemental composition as an example. Within 30 kcal mol-1 at the CCSD(T)/def2-TZVP//PBE0/def2-TZVP level of theory, the coalescence kick and cuckoo methods postulate merely four isomers (1, 3, 6, and 7) for Si2C5H2 (O. Yañez et. al., Chem. Commun., 2017, 53, 12112). On the contrary, chemical intuition yields fourteen (2, 4, 5, and 8-18) new isomers within the same energy range at the B3LYP/6-311++G(2d,2p) level of theory. Based on the relative energies of the first eleven isomers of Si2C5H2 (1, C2v, 0.00; 2, Cs, 21.39; 3, Cs, 21.95; 4, Cs, 22.76; 5, Cs, 24.74; 6, Cs, 25.34; 7, Cs, 25.64; 8, Cs, 25.79; 9, Cs, 27.20; 10, C2v, 28.59; and 11, C2v, 29.16 kcal mol-1) calculated at the CCSD(T)/cc-pVTZ level of theory, it is evident that the search algorithms had missed at least seven isomers in the same energy range. The relative energy gaps of isomers 12-18 fall in the range of 30-40 kcal mol-1 at the latter level of theory. Consequentially, this scenario triggers a speculation going forward with search algorithms alone in the search of all new isomers. While one cannot underestimate the power of these algorithms, the role of chemical intuition may not be completely neglected. Retrospectively, the fourteen new isomers found by chemical intuition may help in writing better search algorithms. All eighteen isomers - including the most stable isomer with a planar tetracoordinate carbon atom 1- remain elusive in the laboratory to date. Thus, structural and spectroscopic parameters have been presented here, which may possibly aid the future experimental studies.
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Affiliation(s)
- Krishnan Thirumoorthy
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore - 632 014, Tamil Nadu, India
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24
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Yañez O, Inostroza D, Usuga-Acevedo B, Vásquez-Espinal A, Pino-Rios R, Tabilo-Sepulveda M, Garza J, Barroso J, Merino G, Tiznado W. Evaluation of restricted probabilistic cellular automata on the exploration of the potential energy surface of Be6B11−. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2548-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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25
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Acelas N, Flórez E, Hadad C, Merino G, Restrepo A. A Comprehensive Picture of the Structures, Energies, and Bonding in [SO4(H2O)n]2–, n = 1–6. J Phys Chem A 2019; 123:8650-8656. [DOI: 10.1021/acs.jpca.9b07033] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Nancy Acelas
- Grupo de Materiales con Impacto, Mat&mpac. Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia
| | - Elizabeth Flórez
- Grupo de Materiales con Impacto, Mat&mpac. Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia
| | - Cacier Hadad
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52−21, Medellín, Colombia
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida Km 6 Antigua Carretera a Progreso. Apdo. Postal 73 Cordemex, 97310 Mérida, Yuc, México
| | - Albeiro Restrepo
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52−21, Medellín, Colombia
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26
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Dong X, Jalife S, Vásquez-Espinal A, Barroso J, Orozco-Ic M, Ravell E, Cabellos JL, Liang WY, Cui ZH, Merino G. Li 2B 24: the simplest combination for a three-ring boron tube. NANOSCALE 2019; 11:2143-2147. [PMID: 30667008 DOI: 10.1039/c8nr09173k] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Herein we introduce a strategy employing lithium atoms as a scaffold to stabilize an embryo for boron tubes. The systematical exploration of the potential energy surface via evolutionary algorithms allowed us to find that Li2B24 adopts a tubular structure formed by three stacked rings of eight borons each with two lithium atoms capping the tube. The lithium atoms are essential for stabilization because of the strong electrostatic interaction between the Li cations and the boron framework, and concomitantly, they compensate for the energy cost of distorting a quasi-planar or double ring B24 cluster.
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Affiliation(s)
- Xue Dong
- Institute of Atomic and Molecular Physics, Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy, Jilin University, Changchun, China.
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27
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Thimmakondu VS. Comment on “Exploiting electronic strategies to stabilize a planar tetracoordinate carbon in cyclic aromatic hydrocarbons” by O. Yañez et al., Chem. Commun., 2017, 53, 12112. Chem Commun (Camb) 2019; 55:12719-12720. [DOI: 10.1039/c9cc04639a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Unequivocally, the global minimum geometry for C7H2 is the linear triplet ground electronic state of heptatriynylidene (1).
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28
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Vásquez‐Espinal A, Palacio‐Rodríguez K, Ravell E, Orozco‐Ic M, Barroso J, Pan S, Tiznado W, Merino G. E
5
M
7
+
(E=C–Pb, M=Li–Cs): A Source of Viable Star‐Shaped Clusters. Chem Asian J 2018; 13:1751-1755. [DOI: 10.1002/asia.201800654] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 05/16/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Alejandro Vásquez‐Espinal
- Departamento de Física AplicadaCentro de Investigación y de Estudios Avanzados, Unidad Mérida Km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Karen Palacio‐Rodríguez
- Química de Recursos Energéticos y Medio AmbienteInstituto de Química, Facultad de Ciencias Exactas y NaturalesUniversidad de Antioquia Calle 70 No. 52-21 Medellín Colombia
| | - Estefanía Ravell
- Departamento de Física AplicadaCentro de Investigación y de Estudios Avanzados, Unidad Mérida Km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Mesías Orozco‐Ic
- Departamento de Física AplicadaCentro de Investigación y de Estudios Avanzados, Unidad Mérida Km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Jorge Barroso
- Departamento de Física AplicadaCentro de Investigación y de Estudios Avanzados, Unidad Mérida Km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Sudip Pan
- Institute of Advanced SynthesisSchool of Chemistry and Molecular EngineeringJiangsu National Synergetic Innovation Center for Advanced MaterialsNanjing Tech University Nanjing 211816 China
| | - William Tiznado
- Departamento de Ciencias Químicas, Facultad de Ciencias ExactasUniversidad Andres Bello República 275 Santiago Chile
| | - Gabriel Merino
- Departamento de Física AplicadaCentro de Investigación y de Estudios Avanzados, Unidad Mérida Km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
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29
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Ravell E, Jalife S, Barroso J, Orozco-Ic M, Hernández-Juárez G, Ortiz-Chi F, Pan S, Cabellos JL, Merino G. Structure and Bonding in CE 5- (E=Al-Tl) Clusters: Planar Tetracoordinate Carbon versus Pentacoordinate Carbon. Chem Asian J 2018; 13:1467-1473. [PMID: 29575767 DOI: 10.1002/asia.201800261] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Indexed: 11/11/2022]
Abstract
The structure, bonding, and stability of clusters with the empirical formula CE5- (E=Al-Tl) have been analyzed by means of high-level computations. The results indicate that, whereas aluminum and gallium clusters have C2v structures with a planar tetracoordinate carbon (ptC), their heavier homologues prefer three-dimensional C4v forms with a pentacoordinate carbon center over the ptC one. The reason for such a preference is a delicate balance between the interaction energy of the fifth E atom with CE4 and the distortion energy. Moreover, bonding analysis shows that the ptC systems can be better described as CE4- , with 17-valence electrons interacting with E. The ptC core in these systems exhibits double aromatic (both σ and π) behavior, but the σ contribution is dominating.
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Affiliation(s)
- Estefanía Ravell
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico
| | - Said Jalife
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico
| | - Jorge Barroso
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico
| | - Mesías Orozco-Ic
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico
| | - Gerardo Hernández-Juárez
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico
| | - Filiberto Ortiz-Chi
- CONACyT-Universidad Juárez Autónoma de Tabasco, Centro de Investigación de Ciencia y Tecnología, Aplicada de Tabasco, C. P., 86690, Cunduacán, Tab., Mexico
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry, and Molecular Engineering, Jiangsu National Synergetic, Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, 211816, P.R. China
| | - José Luis Cabellos
- Departamento de Investigación en Polímeros y Materiales, Universidad de Sonora, Edif. 3G, Blvd. Luis Encinas y Rosales S/N, Centro, 83000, Hermosillo, Son., Mexico
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico
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30
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Dong X, Jalife S, Vásquez-Espinal A, Ravell E, Pan S, Cabellos JL, Liang WY, Cui ZH, Merino G. Li 2 B 12 and Li 3 B 12 : Prediction of the Smallest Tubular and Cage-like Boron Structures. Angew Chem Int Ed Engl 2018; 57:4627-4631. [PMID: 29473272 DOI: 10.1002/anie.201800976] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Indexed: 11/08/2022]
Abstract
An intriguing structural transition from the quasi-planar form of B12 cluster upon the interaction with lithium atoms is reported. High-level computations show that the lowest energy structures of LiB12 , Li2 B12 , and Li3 B12 have quasi-planar (Cs ), tubular (D6d ), and cage-like (Cs ) geometries, respectively. The energetic cost of distorting the B12 quasi-planar fragment is overcompensated by an enhanced electrostatic interaction between the Li cations and the tubular or cage-like B12 fragments, which is the main reason of such drastic structural changes, resulting in the smallest tubular (Li2 B12 ) and cage-like (Li3 B12 ) boron structures reported to date.
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Affiliation(s)
- Xue Dong
- Institute of Atomic and Molecular Physics, Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy, Jilin University, Changchun, China
| | - Said Jalife
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Alejandro Vásquez-Espinal
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Estefanía Ravell
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Sudip Pan
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - José Luis Cabellos
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México.,Departamento de Investigación en Polímeros y Materiales, Universidad de Sonora, Edif. 3G, Blvd Luis Encinas y Rosales S/N, Colonia Centro, 83000, Hermosillo, Son., México
| | - Wei-Yan Liang
- Institute of Atomic and Molecular Physics, Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy, Jilin University, Changchun, China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy, Jilin University, Changchun, China
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
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31
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Dong X, Jalife S, Vásquez‐Espinal A, Ravell E, Pan S, Cabellos JL, Liang W, Cui Z, Merino G. Li
2
B
12
and Li
3
B
12
: Prediction of the Smallest Tubular and Cage‐like Boron Structures. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800976] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Xue Dong
- Institute of Atomic and Molecular Physics Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy Jilin University Changchun China
| | - Said Jalife
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Alejandro Vásquez‐Espinal
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Estefanía Ravell
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Sudip Pan
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - José Luis Cabellos
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
- Departamento de Investigación en Polímeros y Materiales Universidad de Sonora Edif. 3G, Blvd Luis Encinas y Rosales S/N, Colonia Centro 83000 Hermosillo Son. México
| | - Wei‐yan Liang
- Institute of Atomic and Molecular Physics Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy Jilin University Changchun China
| | - Zhong‐hua Cui
- Institute of Atomic and Molecular Physics Jilin Provincial Key Laboratory of Applied Atomic and Molecular Spectroscopy Jilin University Changchun China
| | - Gabriel Merino
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida km 6 Antigua carretera a Progreso. Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
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32
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Pan S, Cabellos JL, Orozco-Ic M, Chattaraj PK, Zhao L, Merino G. Planar pentacoordinate carbon in CGa5+ derivatives. Phys Chem Chem Phys 2018; 20:12350-12355. [DOI: 10.1039/c8cp01009a] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A single isoelectronic substitution by a smaller sized element, Be, is enough to stabilize a CGa5+ cluster with a planar pentacoordinate carbon at the centre.
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Affiliation(s)
- Sudip Pan
- Institute of Advanced Synthesis
- School of Chemistry and Molecular Engineering
- Jiangsu National Synergetic Innovation Center for Advanced Materials
- Nanjing Tech University
- Nanjing
| | - José Luis Cabellos
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados
- Unidad Mérida
- Mérida
- Mexico
| | - Mesías Orozco-Ic
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados
- Unidad Mérida
- Mérida
- Mexico
| | - Pratim K. Chattaraj
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur
- India
| | - Lili Zhao
- Institute of Advanced Synthesis
- School of Chemistry and Molecular Engineering
- Jiangsu National Synergetic Innovation Center for Advanced Materials
- Nanjing Tech University
- Nanjing
| | - Gabriel Merino
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados
- Unidad Mérida
- Mérida
- Mexico
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33
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Florez E, Acelas N, Ramírez F, Hadad C, Restrepo A. Microsolvation of F−. Phys Chem Chem Phys 2018; 20:8909-8916. [DOI: 10.1039/c8cp00819a] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The effective charge in F− is strong enough to induce water dissociation even for small molecularities in the gas phase.
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Affiliation(s)
- Elizabeth Florez
- Grupo de Materiales con Impacto
- Mat&mpac. Facultad de Ciencias Básicas
- Universidad de Medellín
- Medellín
- Colombia
| | - Nancy Acelas
- Grupo de Materiales con Impacto
- Mat&mpac. Facultad de Ciencias Básicas
- Universidad de Medellín
- Medellín
- Colombia
| | - Frank Ramírez
- Instituto de Química
- Universidad de Antioquia UdeA
- Medellín
- Colombia
| | - Cacier Hadad
- Instituto de Química
- Universidad de Antioquia UdeA
- Medellín
- Colombia
| | - Albeiro Restrepo
- Instituto de Química
- Universidad de Antioquia UdeA
- Medellín
- Colombia
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34
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Muñoz-Castro A, King RB. Formation of Spherical Aromatic Endohedral Metallic Fullerenes. Evaluation of Magnetic Properties of M@C 28 (M = Ti, Zr, and Hf) from DFT calculations. Inorg Chem 2017; 56:15251-15258. [PMID: 29166009 DOI: 10.1021/acs.inorgchem.7b02611] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The small C28 cage has been shown experimentally to encapsulate titanium, zirconium, and hafnium (M), among other elements. Here, we explore computationally its magnetic response properties accounting for both global and local shielding tensors. Our results exhibit a continuous shielding region for M@C28 for an orientation-averaged applied field thereby differing from that observed for the hollow C28 structure. Moreover, under a specific orientation of the applied field a long-ranged shielding cone is obtained supporting the spherical aromatic behavior expected by the 2(N + 1)2 Hirsch rule for M@C28, standing for its particular abundance. The comparison between the hollow and endohedral C28 fullerenes exhibits a characteristic long-range behavior at the outside region of the structure. The particular shape of the local chemical shift anisotropy tensor at a representative carbon atom exhibits inherent patterns as a consequence of the spherical aromatic behavior. This shows the capabilities from NMR experiments to account for the nonaromatic → aromatic variation. We envisage that the current approach will be beneficial in comparative studies of aromatic and electronic structure properties, to gain a deeper understanding of the geometrical and electronic structure situation in other endohedral species beyond that available from the information provided by routine NMR measurements.
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Affiliation(s)
- Alvaro Muñoz-Castro
- Laboratorio de Química Inorgánica y Materiales Moleculares, Universidad Autonoma de Chile , Llano Subercaseaux 2801, San Miguel, Santiago, Chile.,Relativistic Molecular Physics Group, Universidad Andres Bello , Republica 275, Santiago, Chile
| | - R Bruce King
- Department of Chemistry, University of Georgia , Athens, Georgia 30602, United States
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35
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36
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Guo JC, Feng LY, Wang YJ, Jalife S, Vásquez-Espinal A, Cabellos JL, Pan S, Merino G, Zhai HJ. Coaxial Triple-Layered versus Helical Be6B11−Clusters: Dual Structural Fluxionality and Multifold Aromaticity. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201703979] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jin-Chang Guo
- Institute of Materials Science & Department of Chemistry; Xinzhou Teachers University; Xinzhou 034000 Shanxi China
- Nanocluster Laboratory; Institute of Molecular Science; Shanxi University; Taiyuan 030006 China
| | - Lin-Yan Feng
- Nanocluster Laboratory; Institute of Molecular Science; Shanxi University; Taiyuan 030006 China
| | - Ying-Jin Wang
- Nanocluster Laboratory; Institute of Molecular Science; Shanxi University; Taiyuan 030006 China
| | - Said Jalife
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados; Unidad Mérida; km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Alejandro Vásquez-Espinal
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados; Unidad Mérida; km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - José Luis Cabellos
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados; Unidad Mérida; km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Sudip Pan
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados; Unidad Mérida; km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Gabriel Merino
- Departamento de Física Aplicada; Centro de Investigación y de Estudios Avanzados; Unidad Mérida; km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex 97310 Mérida Yuc. México
| | - Hua-Jin Zhai
- Nanocluster Laboratory; Institute of Molecular Science; Shanxi University; Taiyuan 030006 China
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37
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Guo JC, Feng LY, Wang YJ, Jalife S, Vásquez-Espinal A, Cabellos JL, Pan S, Merino G, Zhai HJ. Coaxial Triple-Layered versus Helical Be 6 B 11- Clusters: Dual Structural Fluxionality and Multifold Aromaticity. Angew Chem Int Ed Engl 2017; 56:10174-10177. [PMID: 28688126 DOI: 10.1002/anie.201703979] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Indexed: 11/10/2022]
Abstract
Two low-lying structures are unveiled for the Be6 B11- nanocluster system that are virtually isoenergetic. The first, triple-layered cluster has a peripheral B11 ring as central layer, being sandwiched by two Be3 rings in a coaxial fashion, albeit with no discernible interlayer Be-Be bonding. The B11 ring revolves like a flexible chain even at room temperature, gliding freely around the Be6 prism. At elevated temperatures (1000 K), the Be6 core itself also rotates; that is, two Be3 rings undergo relative rotation or twisting with respect to each other. Bonding analyses suggest four-fold (π and σ) aromaticity, offering a dilute and fluxional electron cloud that lubricates the dynamics. The second, helix-type cluster contains a B11 helical skeleton encompassing a distorted Be6 prism. It is chiral and is the first nanosystem with a boron helix. Molecular dynamics also shows that at high temperature the helix cluster readily converts into the triple-layered one.
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Affiliation(s)
- Jin-Chang Guo
- Institute of Materials Science & Department of Chemistry, Xinzhou Teachers University, Xinzhou, 034000, Shanxi, China.,Nanocluster Laboratory, Institute of Molecular Science, Shanxi University, Taiyuan, 030006, China
| | - Lin-Yan Feng
- Nanocluster Laboratory, Institute of Molecular Science, Shanxi University, Taiyuan, 030006, China
| | - Ying-Jin Wang
- Nanocluster Laboratory, Institute of Molecular Science, Shanxi University, Taiyuan, 030006, China
| | - Said Jalife
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Alejandro Vásquez-Espinal
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - José Luis Cabellos
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Sudip Pan
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Hua-Jin Zhai
- Nanocluster Laboratory, Institute of Molecular Science, Shanxi University, Taiyuan, 030006, China
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38
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Murillo F, Vargas-Caamal A, Pan S, Cabellos JL, Mora-Fonz MJ, Muñoz-Castro A, Restrepo A, Merino G. Does H 4SO 5 exist? Phys Chem Chem Phys 2017. [PMID: 28636012 DOI: 10.1039/c7cp01328k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The possible existence of H4SO5 in aqueous sulfuric acid is analyzed in detail. For bare H4SO5, the computed free energy barrier for the exergonic transformation of H4SO5 into the H2SO4H2O complex is only 3.8 kcal mol-1. The presence of water or sulfuric acid catalyzes the dehydration to such an extent that it becomes almost a barrierless process. In the gas phase, dehydration of H4SO5 is an autocatalytic reaction as the water molecule produced by the decomposition of one H4SO5 molecule induces further dissociation. Thus, in solution, the surrounding water molecules make the para-sulfuric acid a very vulnerable species to exist. The simulated Raman spectra also corroborate the absence of H4SO5 in solution.
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Affiliation(s)
- Fernando Murillo
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
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39
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Martínez SH, Pan S, Cabellos JL, Dzib E, Fernández-Herrera MA, Merino G. Importance of Dispersion on the Stability of the Concave-Bound CpM (M = Fe, Ru, Os) Complexes of Sumanene. Organometallics 2017. [DOI: 10.1021/acs.organomet.7b00282] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Saúl H. Martínez
- Departamento
de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex 97310, Mérida, México
| | - Sudip Pan
- Departamento
de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex 97310, Mérida, México
| | - José Luis Cabellos
- Departamento
de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex 97310, Mérida, México
| | - Eugenia Dzib
- Departamento
de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex 97310, Mérida, México
| | - María A. Fernández-Herrera
- Departamento
de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex 97310, Mérida, México
- Conacyt
Research Fellow: Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados Unidad Mérida, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, México
| | - Gabriel Merino
- Departamento
de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Km. 6 Antigua carretera a Progreso Apdo. Postal 73, Cordemex 97310, Mérida, México
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40
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Low-energy structures of clusters modeled with competing repulsive and either long- or moderate short-range attractive interactions. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2017.01.035] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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41
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Mondal S, Cabellos JL, Pan S, Osorio E, Torres-Vega JJ, Tiznado W, Restrepo A, Merino G. 10-π-Electron arenes à la carte: structure and bonding of the [E-(CnHn)-E](n-6) (E = Ca, Sr, Ba; n = 6-8) complexes. Phys Chem Chem Phys 2017; 18:11909-18. [PMID: 26936126 DOI: 10.1039/c6cp00671j] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
In this paper, we provide solid evidence to show that among an overwhelming structural diversity, alkaline earth metals (Ca, Sr, Ba) have the ability to form inverted sandwich compounds with C6H6, C7H7(+), and C8H8(2+) of Dnh symmetry and general formula [E-(CnHn)-E](n-6) (n = 6-8) with planar 10-π-electron aromatic cores by virtue of transferring two electrons per metal atom to the ring. However, the origin of the orbital interaction between the metals and the carbon ring is quite different; while [E-(C6H6)-E] complexes are dominated by δ-interactions, both π- and δ-interactions are important in [E-(C7H7)-E](+) and [E-(C8H8)-E](2+) complexes.
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Affiliation(s)
- Sukanta Mondal
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Jose Luis Cabellos
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
| | - Sudip Pan
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology, Kharagpur, 721302, India
| | - Edison Osorio
- Departamento de Ciencias Básicas, Fundación Universitaria Luis Amigó, SISCO, Transversal 51A #67B 90, Medellín, Colombia
| | - Juan Jose Torres-Vega
- Facultad de Ciencias Físicas, Universidad Nacional Mayor de San Marcos, P.O. Box: 14-0149, Lima, Peru
| | - William Tiznado
- Departamento de Ciencias Químicas, Facultad de Ciencias Exactas Universidad Andres Bello, República 275, Santiago, Chile
| | - Albeiro Restrepo
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52-21, Medellín, Colombia
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso, Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
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42
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Yañez O, Vásquez-Espinal A, Pino-Rios R, Ferraro F, Pan S, Osorio E, Merino G, Tiznado W. Exploiting electronic strategies to stabilize a planar tetracoordinate carbon in cyclic aromatic hydrocarbons. Chem Commun (Camb) 2017; 53:12112-12115. [DOI: 10.1039/c7cc06248f] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new approach to stabilize compounds containing a planar tetracoordinate carbon (ptC), embedded in aromatic hydrocarbons, is presented herein.
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Affiliation(s)
- O. Yañez
- Doctorado en Fisicoquímica Molecular
- Facultad de Ciencias Exactas
- Universidad Andres Bello
- República 275
- Santiago
| | - A. Vásquez-Espinal
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados Unidad Mérida
- Km. 6 Antigua carretera a Progreso
- Apdo. Postal 73
- Mérida
| | - R. Pino-Rios
- Departamento de Ciencias Químicas
- Facultad de Ciencias Exactas Universidad Andres Bello
- República 275
- Santiago
- Chile
| | - F. Ferraro
- Departamento de Ciencias Básicas
- Universidad Católica Luis Amigó, SISCO
- Transversal 51A # 67B 90
- Medellín
- Colombia
| | - S. Pan
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados Unidad Mérida
- Km. 6 Antigua carretera a Progreso
- Apdo. Postal 73
- Mérida
| | - E. Osorio
- Departamento de Ciencias Básicas
- Universidad Católica Luis Amigó, SISCO
- Transversal 51A # 67B 90
- Medellín
- Colombia
| | - G. Merino
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados Unidad Mérida
- Km. 6 Antigua carretera a Progreso
- Apdo. Postal 73
- Mérida
| | - W. Tiznado
- Departamento de Ciencias Químicas
- Facultad de Ciencias Exactas Universidad Andres Bello
- República 275
- Santiago
- Chile
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43
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Barroso J, Mondal S, Cabellos JL, Osorio E, Pan S, Merino G. Structure and Bonding of Alkali-Metal Pentalenides. Organometallics 2016. [DOI: 10.1021/acs.organomet.6b00768] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jorge Barroso
- Departamento de
Física Aplicada, Centro de Investigación y de Estudios, Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, México
| | - Sukanta Mondal
- Departamento de
Física Aplicada, Centro de Investigación y de Estudios, Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, México
| | - José Luis Cabellos
- Departamento de
Física Aplicada, Centro de Investigación y de Estudios, Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, México
| | - Edison Osorio
- Departamento de Ciencias Básicas, Universidad Católica Luis Amigó, SISCO, Transversal 51A #67B 90, Medellín, Colombia
| | - Sudip Pan
- Departamento de
Física Aplicada, Centro de Investigación y de Estudios, Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, México
| | - Gabriel Merino
- Departamento de
Física Aplicada, Centro de Investigación y de Estudios, Avanzados Unidad Mérida, km 6 Antigua carretera a Progreso, Apdo. Postal 73, Cordemex, 97310 Mérida, Yucatán, México
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44
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Muñoz‐Castro A. Evaluation of Hollow Golden Icosahedrons: Bonding and Spherical Aromatic Properties of [Au
11
E]
3−
Superatoms (E=Se and Te) from Relativistic DFT calculations, Persistent Structures? Chemphyschem 2016; 18:87-92. [DOI: 10.1002/cphc.201600906] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Revised: 10/26/2016] [Indexed: 11/06/2022]
Affiliation(s)
- Alvaro Muñoz‐Castro
- Grupo de Química Inorgánica y Materiales Moleculares Universidad Autonoma de Chile El Llano Subercaseaux 2801 Santiago Chile
- Doctorado en Fisicoquímica Molecular Universidad Andres Bello, Av. Republica 275 Santiago Chile
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45
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Rodríguez-Kessler PL, Rodríguez-Domínguez AR. Structures and Electronic Properties of TinV (n = 1–16) Clusters: First-Principles Calculations. J Phys Chem A 2016; 120:2401-7. [DOI: 10.1021/acs.jpca.6b00224] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- P. L. Rodríguez-Kessler
- Instituto Potosino de Investigación Cientı́fica y Tecnológica, San Luis Potosı́ 78216, México
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46
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Vargas-Caamal A, Cabellos JL, Ortiz-Chi F, Rzepa HS, Restrepo A, Merino G. How Many Water Molecules Does it Take to Dissociate HCl? Chemistry 2016; 22:2812-8. [PMID: 26774026 DOI: 10.1002/chem.201504016] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Indexed: 11/07/2022]
Abstract
The potential energy surfaces of the HCl(H2O)n (n is the number of water molecules) clusters are systematically explored using density functional theory and high-level ab initio computations. On the basis of electronic energies, the number of water molecules needed for HCl dissociation is four as reported by some experimental groups. However, this number is five owing to the inclusion of entropic factors. Wiberg bond indices are calculated and analyzed, and the results provide a quadratic correlation and classification of clusters according to the nondissociated, partially dissociated, and fully dissociated character of the H-Cl bond. Our computations show that if temperature is not controlled during the experiment, the values obtained for the dipole moment (or for any measurable property) are susceptible to change, providing a different picture of the number of water molecules needed for HCl dissociation in a nanoscopic droplet.
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Affiliation(s)
- Alba Vargas-Caamal
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Jose Luis Cabellos
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Filiberto Ortiz-Chi
- Instituto Tecnológico Superior de Calkiní, Av. Ah-Canul s/n, Carr. Fed. Calkiní-Campeche, CP, 24900, Calkiní, Campeche, México
| | - Henry S Rzepa
- Department of Chemistry, Imperial College London, South Kensington campus, London, SW7 2AZ, UK
| | - Albeiro Restrepo
- Instituto de Química, Universidad de Antioquia UdeA, Calle 70 No. 52-21, Medellín, Colombia.
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida, Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México.
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47
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Flórez E, Acelas N, Ibargüen C, Mondal S, Cabellos JL, Merino G, Restrepo A. Microsolvation of NO3−: structural exploration and bonding analysis. RSC Adv 2016. [DOI: 10.1039/c6ra15059d] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A rich and complex structural diversity is uncovered in the microsolvation of the nitrate anion.
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Affiliation(s)
| | - Nancy Acelas
- Departamento de Ciencias Básicas
- Universidad de Medellín
- Colombia
| | - César Ibargüen
- Departamento de Ciencias Básicas
- Universidad de Medellín
- Colombia
- Instituto de Química
- Universidad de Antioquia UdeA
| | - Sukanta Mondal
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados
- Unidad Mérida
- Mérida
- Mexico
| | - José Luis Cabellos
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados
- Unidad Mérida
- Mérida
- Mexico
| | - Gabriel Merino
- Departamento de Física Aplicada
- Centro de Investigación y de Estudios Avanzados
- Unidad Mérida
- Mérida
- Mexico
| | - Albeiro Restrepo
- Instituto de Química
- Universidad de Antioquia UdeA
- Medellín
- Colombia
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48
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Liu L, Moreno D, Osorio E, Castro AC, Pan S, Chattaraj PK, Heine T, Merino G. Structure and bonding of IrB12−: converting a rigid boron B12 platelet to a Wankel motor. RSC Adv 2016. [DOI: 10.1039/c6ra02992b] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
B12 is a rigid cluster with a high inner ring rotational energy barrier. However, doping it with Ir lowers the barrier significantly, transforming the IrB12− cluster in a Wankel motor.
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Affiliation(s)
- Lei Liu
- Department of Physics and Earth Science
- Jacobs University
- Bremen
- Germany
| | - Diego Moreno
- Departamento de Fsica Aplicada
- Centro de Investigacion y de Estudios
- Avanzados
- Unidad Merida. Km 6 Antigua Carretera a Progreso. Apdo
- Merida
| | - Edison Osorio
- Departamento de Ciencias Básicas
- Fundación Universitaria Luis Amigó
- SISCO
- Medellín
- Colombia
| | - Abril C. Castro
- Institut de Química Computacional i Catàlisi
- Departament de Química
- Universitat de Girona
- Girona
- Spain
| | - Sudip Pan
- Department of Chemistry and Center for Theoretical Studies
- Indian Institute of Technology Kharagpur
- India
| | - Pratim K. Chattaraj
- Department of Chemistry and Center for Theoretical Studies
- Indian Institute of Technology Kharagpur
- India
| | - Thomas Heine
- Department of Physics and Earth Science
- Jacobs University
- Bremen
- Germany
| | - Gabriel Merino
- Departamento de Fsica Aplicada
- Centro de Investigacion y de Estudios
- Avanzados
- Unidad Merida. Km 6 Antigua Carretera a Progreso. Apdo
- Merida
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49
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Vargas-Caamal A, Pan S, Ortiz-Chi F, Cabellos JL, Boto RA, Contreras-Garcia J, Restrepo A, Chattaraj PK, Merino G. How strong are the metallocene-metallocene interactions? Cases of ferrocene, ruthenocene, and osmocene. Phys Chem Chem Phys 2015; 18:550-6. [PMID: 26618629 DOI: 10.1039/c5cp05956a] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An exhaustive exploration of the potential energy surfaces of ferrocene, ruthenocene and osmocene dimers has been performed. Our computations involving dispersion show that only four different isomers are present in each metallocene dimer. The collective action of small interaction energies of dispersive nature leads to a dissociation energy of 7.5 kcal mol(-1) for the ferrocene dimer. Dispersion has strong effects on the geometrical parameters, reducing the M···M distances by almost 1 Å. Our results also reveal that inclusion of entropic factors modifies the relative stability of the complexes. The nature of bonding is examined using the energy decomposition analysis and the non-covalent interaction index. Both analyses indicate that dispersion is the major contributing factor in stabilizing a metallocene dimer.
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Affiliation(s)
- Alba Vargas-Caamal
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., Mexico.
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50
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Jin Y, Tian Y, Kuang X, Zhang C, Lu C, Wang J, Lv J, Ding L, Ju M. Ab Initio Search for Global Minimum Structures of Pure and Boron Doped Silver Clusters. J Phys Chem A 2015; 119:6738-45. [DOI: 10.1021/acs.jpca.5b03542] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuanyuan Jin
- Institute
of Atomic and Molecular Physics, Sichuan University, Chengdu 610065, China
| | - Yonghong Tian
- Department
of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
| | - Xiaoyu Kuang
- Institute
of Atomic and Molecular Physics, Sichuan University, Chengdu 610065, China
| | - Chuanzhao Zhang
- Institute
of Atomic and Molecular Physics, Sichuan University, Chengdu 610065, China
| | - Cheng Lu
- Department
of Physics, Nanyang Normal University, Nanyang 473061, China
| | - Jingjing Wang
- Institute
of Atomic and Molecular Physics, Sichuan University, Chengdu 610065, China
| | - Jian Lv
- Beijing Computational Science Research Center, Beijing 100084, China
| | - Liping Ding
- Institute
of Atomic and Molecular Physics, Sichuan University, Chengdu 610065, China
| | - Meng Ju
- Institute
of Atomic and Molecular Physics, Sichuan University, Chengdu 610065, China
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