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Maurya N, Sharma A, Sundaram S. The Role of PGPB-Microalgae interaction in Alleviating Salt Stress in Plants. Curr Microbiol 2024; 81:270. [PMID: 39012372 DOI: 10.1007/s00284-024-03805-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Accepted: 07/12/2024] [Indexed: 07/17/2024]
Abstract
Plant development and yield are severely hampered by climate change. Plants are very prone to a variety of abiotic stressors during growth, making them susceptible to destruction which can reduce the productivity by 20-60%. These stresses generate reactive oxygen species (ROS), which damage lipids, proteins, and nucleic acids. Microalgae and plant growth-promoting bacteria (PGPB) are remarkably effective at reducing the effects of salt stress and promoting plant growth, thereby increasing agricultural yield, and helping ensure global food security. Through a variety of mechanisms, including the production of phytohormones, 1-aminocyclopropane-1-carboxylic acid deaminase, exopolysaccharide, siderophores, hydrogen cyanide, extracellular polymeric substances, volatile organic compounds, and modulation of antioxidants defense machinery under abiotic stresses promote plant growth after inoculation of PGPB and microalgae. These microorganisms also maintain ion homeostasis, offer osmotic balance, stimulate genes that respond to salt and drought, rewire the metabolism, modify the transcription of ion transporter genes, and more. To counteract the negative consequences of salinity stress, this study summarizes the effects of PGPB- microalgae along with a tentative protective mechanism during salinity stress for sustainable agriculture.
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Affiliation(s)
- Neetu Maurya
- Centre of Biotechnology, University of Allahabad, Uttar Pradesh, Prayagraj, 211002, India
| | - Abhijeet Sharma
- Centre of Biotechnology, University of Allahabad, Uttar Pradesh, Prayagraj, 211002, India
| | - Shanthy Sundaram
- Centre of Biotechnology, University of Allahabad, Uttar Pradesh, Prayagraj, 211002, India.
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Srivastava S, Bhattacharjee A, Dubey S, Sharma S. Bacterial exopolysaccharide amendment improves the shelf life and functional efficacy of bioinoculant under salinity stress. J Appl Microbiol 2024; 135:lxae166. [PMID: 38960398 DOI: 10.1093/jambio/lxae166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 06/20/2024] [Accepted: 07/02/2024] [Indexed: 07/05/2024]
Abstract
AIM Bacterial exopolysaccharides (EPS) possess numerous properties beneficial for the growth of microbes and plants under hostile conditions. The study aimed to develop a bioformulation with bacterial EPS to enhance the bioinoculant's shelf life and functional efficacy under salinity stress. METHODS AND RESULTS High EPS-producing and salt-tolerant bacterial strain (Bacillus haynessi SD2) exhibiting auxin-production, phosphate-solubilization, and biofilm-forming ability, was selected. EPS-based bioformulation of SD2 improved the growth of three legumes under salt stress, from which pigeonpea was selected for further experiments. SD2 improved the growth and lowered the accumulation of stress markers in plants under salt stress. Bioformulations with varying EPS concentrations (1% and 2%) were stored for 6 months at 4°C, 30°C, and 37°C to assess their shelf life and functional efficacy. The shelf life and efficacy of EPS-based bioformulation were sustained even after 6 months of storage at high temperature, enhancing pigeonpea growth under stress in both control and natural conditions. However, the efficacy of non EPS-based bioformulation declined following four months of storage. The bioformulation (with 1% EPS) modulated bacterial abundance in the plant's rhizosphere under stress conditions. CONCLUSION The study brings forth a new strategy for developing next-generation bioformulations with higher shelf life and efficacy for salinity stress management in pigeonpea.
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Affiliation(s)
- Sonal Srivastava
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Annapurna Bhattacharjee
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Shubham Dubey
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Shilpi Sharma
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India
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3
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Zapata-Peñasco I, Avelino-Jiménez I, Mendoza-Pérez J, Vázquez Guevara M, Gutiérrez-Ladrón de Guevara M, Valadez- Martínez M, Hernández-Maya L, Garibay-Febles V, Fregoso-Aguilar T, Fonseca-Campos J. Environmental stressor assessment of hydrocarbonoclastic bacteria biofilms from a marine oil spill. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2024; 42:e00834. [PMID: 38948351 PMCID: PMC11211098 DOI: 10.1016/j.btre.2024.e00834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 03/04/2024] [Accepted: 03/07/2024] [Indexed: 07/02/2024]
Abstract
The environmental and economic impact of an oil spill can be significant. Biotechnologies applied during a marine oil spill involve bioaugmentation with immobilised or encapsulated indigenous hydrocarbonoclastic species selected under laboratory conditions to improve degradation rates. The environmental factors that act as stressors and impact the effectiveness of hydrocarbon removal are one of the challenges associated with these applications. Understanding how native microbes react to environmental stresses is necessary for effective bioaugmentation. Herein, Micrococcus luteus and M. yunnanensis isolated from a marine oil spill mooring system showed hydrocarbonoclastic activity on Maya crude oil in a short time by means of total petroleum hydrocarbons (TPH) at 144 h: M. luteus up to 98.79 % and M. yunnanensis 97.77 % removal. The assessment of Micrococcus biofilms at different temperature (30 °C and 50 °C), pH (5, 6, 7, 8, 9), salinity (30, 50, 60, 70, 80 g/L), and crude oil concentration (1, 5, 15, 25, 35 %) showed different response to the stressors depending on the strain. According to response surface analysis, the main effect was temperature > salinity > hydrocarbon concentration. The hydrocarbonoclastic biofilm architecture was characterised using scanning electron microscopy (SEM) and atomic force microscopy (AFM). Subtle but significant differences were observed: pili in M. luteus by SEM and the topographical differences measured by AFM Power Spectral Density (PSD) analysis, roughness was higher in M. luteus than in M. yunnanensis. In all three domains of life, the Universal Stress Protein (Usp) is crucial for stress adaptation. Herein, the uspA gene expression was analysed in Micrococcus biofilm under environmental stressors. The uspA expression increased up to 2.5-fold in M. luteus biofilms at 30 °C, and 1.3-fold at 50 °C. The highest uspA expression was recorded in M. yunnanensis biofilms at 50 °C with 2.5 and 3-fold with salinities of 50, 60, and 80 g/L at hydrocarbon concentrations of 15, 25, and 35 %. M. yunnanensis biofilms showed greater resilience than M. luteus biofilms when exposed to harsh environmental stressors. M. yunnanensis biofilms were thicker than M. luteus biofilms. Both biofilm responses to environmental stressors through uspA gene expression were consistent with the behaviours observed in the response surface analyses. The uspA gene is a suitable biomarker for assessing environmental stressors of potential microorganisms for bioremediation of marine oil spills and for biosensing the ecophysiological status of native microbiota in a marine petroleum environment.
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Affiliation(s)
- I. Zapata-Peñasco
- Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas Norte 152, Gustavo A. Madero, Ciudad de México, 07730, Mexico
| | - I.A. Avelino-Jiménez
- Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas Norte 152, Gustavo A. Madero, Ciudad de México, 07730, Mexico
| | - J. Mendoza-Pérez
- Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Av. Wilfrido Massieu 399, Nueva Industrial Vallejo, Gustavo A. Madero, 07738, Mexico
| | - M. Vázquez Guevara
- Facultad de Química, Universidad de Guanajuato, Noria Alta, Guanajuato, 36050, Mexico
| | - M. Gutiérrez-Ladrón de Guevara
- Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Av. Wilfrido Massieu 399, Nueva Industrial Vallejo, Gustavo A. Madero, 07738, Mexico
| | - M. Valadez- Martínez
- Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas Norte 152, Gustavo A. Madero, Ciudad de México, 07730, Mexico
| | - L. Hernández-Maya
- Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas Norte 152, Gustavo A. Madero, Ciudad de México, 07730, Mexico
| | - V. Garibay-Febles
- Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas Norte 152, Gustavo A. Madero, Ciudad de México, 07730, Mexico
| | - T. Fregoso-Aguilar
- Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Av. Wilfrido Massieu 399, Nueva Industrial Vallejo, Gustavo A. Madero, 07738, Mexico
| | - J. Fonseca-Campos
- Unidad Profesional Interdisciplinaria en Ingeniería y Tecnologías Avanzadas, Instituto Politécnico Nacional, Av Instituto Politécnico Nacional, Gustavo A. Madero, 07340, Mexico
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Zhang C, Yu X, Laipan M, Wei T, Guo J. Soil health improvement by inoculation of indigenous microalgae in saline soil. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2024; 46:23. [PMID: 38225518 DOI: 10.1007/s10653-023-01790-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 10/16/2023] [Indexed: 01/17/2024]
Abstract
Using biological methods to improve saline soils is recognized as an eco-friendly and sustainable way. In this study, two indigenous algae YJ-1 and YJ-2 screened from salinized farmland were inoculated into saline soils with different salinization levels to investigate their potential in enhancing soil health by laboratory microcosm experiment. The results showed that individual inoculation of the two algae quickly resulted in the formation of algal crusts, and the chlorophyll content in the saline soils gradually increased with the incubation time. The soil pH decreased significantly from the initial 8.15-9.45 to 6.97-7.56 after 60-day incubation. The exopolysaccharides secretion and the activities of catalase, sucrase, and urease in saline soils also increased. Microalgal inoculation increased soil organic matter storage, while decreasing the available nutrient contents possibly due to the depletion of microalgal growth. PCA and PCC results identified that microalgal biomass as the predominant variable affecting soil quality. Overall, these data revealed the great potential of microalgae in the amelioration of saline soils, especially in pH reduction and enzyme activity enhancement. This study will provide the theoretical foundation for improving saline soils via algalization.
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Affiliation(s)
- Chao Zhang
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, 710021, People's Republic of China.
| | - Xianwei Yu
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, 710021, People's Republic of China
| | - Minwang Laipan
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, 710021, People's Republic of China
| | - Ting Wei
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, 710021, People's Republic of China
| | - Junkang Guo
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, 710021, People's Republic of China
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Gauhar SJ, Qurashi AW, Liaqat I, Zafar U, Virk MA, Ara C, Faheem M, Mubin M. Halotolerant bacterial biofilms for desalination and water treatment: a pilot study. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-27411-5. [PMID: 37171730 DOI: 10.1007/s11356-023-27411-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 04/30/2023] [Indexed: 05/13/2023]
Abstract
Salinity has a significant impact on the water quality and crop yield. Physical desalination techniques were once thought to be expensive and time-consuming. Among biological techniques, halotolerant bacteria were thought to be the fastest and most effective way to reduce the salt content in brackish saltwater water. In the current study, halotolerant bacterial biofilms were used to desalinate saline water on abiotic substrates (such as sand, pebbles, glass beads, and plastic beads), and studied subsequently for the effects on Zea mays germination. Briefly, salt samples (SLT7 and SLT8) from the Khewra site in Punjab, Pakistan, as well as seawater and sea sand samples (USW1, USW3, USW6, DSW1, DSW4, SS1, and SS3) from Karachi, Sindh, Pakistan's Arabian Sea, were collected. Halotolerant bacteria were isolated and characterized. Crystal violet ring assays and capsule staining were used to estimate extracellular polymeric substance (EPS) and biofilm development, respectively. All halotolerant bacterial strains were spore formers and produced EPS and formed biofilms well. 16S rRNA gene sequencing of the best halotolerant bacteria, USW6, showed the closest (100%) similarity to Bacillus aerius strain G-07 (a novel species) (accession number ON202984). A pilot-scale experiment for desalinating the artificial water (supplemented with 1 M NaCl) using biofilm adhered abiotic beads showed declined level of NaCl from 1 M to 0.00003 M after 15 days in treated water. Also, Zea mays germination was observed in the plants using treated water compared to no growth in the non-treated saline water. Estimations of chlorophyll, total soluble sugar, and protein revealed that plants cultivated using elute collected from a desalinated pilot scale setup contained less chlorophyll (i.e., 5.994 and 116.76). Likewise, plants grown with elute had a total soluble protein and sugar content of 1.45 mg/ml and 1.3 mg/ml, respectively. Overall, in treated water plants, a minor drop in chlorophyll content, a slight increase in total soluble sugar content, and a slight increase in protein content were noted. The study concluded that biofilm-treated desalt water has the potential to significantly reduce the effects of droughts, soil salinization, and economic and environmental issues associated with agricultural drainage. The results specified the application of halotolerant bacteria biofilms (Bacillus aerius, a novel species, USW6) for water desalination to overcome the problem of water scarcity caused by global warming and the increased salinity.
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Affiliation(s)
- Sadaf Jahan Gauhar
- Department of Biology, Faculty of Basic Sciences, Lahore Garrison University, Lahore, Pakistan
| | - Aisha Waheed Qurashi
- Department of Biology, Faculty of Basic Sciences, Lahore Garrison University, Lahore, Pakistan
| | - Iram Liaqat
- Microbiology Lab, Department of Zoology, Government College University, Lahore, 54000, Pakistan.
| | - Urooj Zafar
- Department of Microbiology, University of Karachi, Karachi, Pakistan
| | - Muhammad Arshad Virk
- CVAS, University of Veterinary and Animal Sciences Lahore, Jhang Campus, Jhang, Pakistan
| | - Chaman Ara
- Department of Zoology, University of the Punjab, Lahore, Pakistan
| | - Mehwish Faheem
- Microbiology Lab, Department of Zoology, Government College University, Lahore, 54000, Pakistan
| | - Muhammad Mubin
- Centre of Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad, Pakistan
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Park H, Faulkner M, Toogood HS, Chen GQ, Scrutton N. Online Omics Platform Expedites Industrial Application of Halomonas bluephagenesis TD1.0. Bioinform Biol Insights 2023; 17:11779322231171779. [PMID: 37200674 PMCID: PMC10185862 DOI: 10.1177/11779322231171779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 04/07/2023] [Indexed: 05/20/2023] Open
Abstract
Multi-omic data mining has the potential to revolutionize synthetic biology especially in non-model organisms that have not been extensively studied. However, tangible engineering direction from computational analysis remains elusive due to the interpretability of large datasets and the difficulty in analysis for non-experts. New omics data are generated faster than our ability to use and analyse results effectively, resulting in strain development that proceeds through classic methods of trial-and-error without insight into complex cell dynamics. Here we introduce a user-friendly, interactive website hosting multi-omics data. Importantly, this new platform allows non-experts to explore questions in an industrially important chassis whose cellular dynamics are still largely unknown. The web platform contains a complete KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway enrichment analysis derived from principal components analysis, an interactive bio-cluster heatmap analysis of genes, and the Halomonas TD1.0 genome-scale metabolic (GEM) model. As a case study of the effectiveness of this platform, we applied unsupervised machine learning to determine key differences between Halomonas bluephagenesis TD1.0 cultivated under varied conditions. Specifically, cell motility and flagella apparatus are identified to drive energy expenditure usage at different osmolarities, and predictions were verified experimentally using microscopy and fluorescence labelled flagella staining. As more omics projects are completed, this landing page will facilitate exploration and targeted engineering efforts of the robust, industrial chassis H bluephagenesis for researchers without extensive bioinformatics background.
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Affiliation(s)
- Helen Park
- EPSRC/BBSRC Future Biomanufacturing Research Hub and BBSRC Synthetic Biology Research Centre SYNBIOCHEM, Manchester Institute of Biotechnology and Department of Chemistry, The University of Manchester, Manchester, UK
- Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing, China
| | - Matthew Faulkner
- EPSRC/BBSRC Future Biomanufacturing Research Hub and BBSRC Synthetic Biology Research Centre SYNBIOCHEM, Manchester Institute of Biotechnology and Department of Chemistry, The University of Manchester, Manchester, UK
| | - Helen S Toogood
- EPSRC/BBSRC Future Biomanufacturing Research Hub and BBSRC Synthetic Biology Research Centre SYNBIOCHEM, Manchester Institute of Biotechnology and Department of Chemistry, The University of Manchester, Manchester, UK
| | - Guo-Qiang Chen
- Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing, China
| | - Nigel Scrutton
- EPSRC/BBSRC Future Biomanufacturing Research Hub and BBSRC Synthetic Biology Research Centre SYNBIOCHEM, Manchester Institute of Biotechnology and Department of Chemistry, The University of Manchester, Manchester, UK
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Dragojević M, Stankovic N, Djokic L, Raičević V, Jovičić-Petrović J. Endorhizosphere of indigenous succulent halophytes: a valuable resource of plant growth promoting bacteria. ENVIRONMENTAL MICROBIOME 2023; 18:20. [PMID: 36934265 PMCID: PMC10024849 DOI: 10.1186/s40793-023-00477-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 03/06/2023] [Indexed: 06/18/2023]
Abstract
The adaptability of halophytes to increased soil salinity is related to complex rhizosphere interactions. In this study, an integrative approach, combining culture-independent and culture-dependent techniques was used to analyze the bacterial communities in the endorizosphere of indigenous succulent halophytes Salicornia europaea, Suaeda maritima, and Camphorosma annua from the natural salt marshes of Slano Kopovo (Serbia). The 16 S rDNA analyses gave, for the first time, an insight into the composition of the endophytic bacterial communities of S. maritima and C. annua. We have found that the composition of endophyte microbiomes in the same habitat is to some extent influenced by plant species. A cultivable portion of the halophyte microbiota was tested at different NaCl concentrations for the set of plant growth promoting (PGP) traits. Through the mining of indigenous halotolerant endophytes, we obtained a collection representing a core endophyte microbiome conferring desirable PGP traits. The majority (65%) of the selected strains belonged to the common halotolerant/halophilic genera Halomonas, Kushneria, and Halobacillus, with representatives exhibiting multiple PGP traits, and retaining beneficial traits in conditions of the increased salinity. The results suggest that the root endosphere of halophytes is a valuable source of PGP bacteria supporting plant growth and fitness in salt-affected soils.
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Affiliation(s)
- Milica Dragojević
- Faculty of Agriculture, University of Belgrade, Nemanjina 6, Zemun, 11080 Serbia
| | - Nada Stankovic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, Belgrade, Serbia
| | - Lidija Djokic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, Belgrade, Serbia
| | - Vera Raičević
- Faculty of Agriculture, University of Belgrade, Nemanjina 6, Zemun, 11080 Serbia
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Shabaan M, Asghar HN, Akhtar MJ, Saleem MF. Assessment of cumulative microbial respiration and their ameliorative role in sustaining maize growth under salt stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 196:33-42. [PMID: 36689831 DOI: 10.1016/j.plaphy.2023.01.037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 01/04/2023] [Accepted: 01/18/2023] [Indexed: 06/17/2023]
Abstract
Cumulative microbial respiration reflects microbial activities and their potential to support plant growth, where salt tolerant rhizobacteria can optimize their respiration, and ensure plant survival under salt stress. We evaluated cumulative microbial respiration of different salt tolerant rhizobacterial strains at different salinity levels, and checked their ability to sustain plant growth under natural saline conditions by using maize as test crop. Our results revealed that at the highest EC level (10 dS m-1), strain 'SUA-14' performed significantly better, and exhibited the greatest cumulative respiration (4.2 fold) followed by SHM-13 (3.8 fold), as compared to un-inoculated control. Moreover, results of the field trial indicated a similar trend, where significant improvements in shoot fresh weight (59%), root fresh weight (80%), shoot dry weight (56%), root dry weight (1.4 fold), leaf area (1.9 fold), straw yield (41%), cob diameter (33%), SPAD value (84%), yield (99%), relative water contents (91%), flavonoid (55%), 1000 grain weight (∼100%), soluble sugars (41%) and soluble proteins (45%) were observed due to inoculation of strain 'SUA-14' as compared to un-inoculated control. Similarly, substantial decline in leaf Na+ (34%), Na+/K+ ratio (69%), electrolyte leakage (8%), catalase (54%), peroxidase (73%), and H2O2 (50%) activities were observed after inoculation of 'SUA-14' with a concomitant increment in the leaf K+ contents (70%) under salinity stress than un-inoculated control. Hence, among all the tested rhizobacterial isolates, 'SUA-14' served as the most efficient strain in alleviating the detrimental impacts of salinity on maize growth and yield. The 16S rRNA sequencing identified it as Acinetobacter johnsonii.
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Affiliation(s)
- Muhammad Shabaan
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Pakistan.
| | - Hafiz Naeem Asghar
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Pakistan.
| | - Muhammad Javed Akhtar
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Pakistan
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Haroon U, Munis MFH, Liaquat F, Khizar M, Elahi M, Chaudhary HJ. Biofilm formation and flocculation potential analysis of halotolerant Bacillus tequilensis and its inoculation in soil to mitigate salinity stress of chickpea. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2023; 29:277-288. [PMID: 36875729 PMCID: PMC9981856 DOI: 10.1007/s12298-023-01280-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 12/30/2022] [Accepted: 01/11/2023] [Indexed: 06/12/2023]
Abstract
Application of beneficial microbes in soil is an important avenue to control plant stresses. In this study, the salinity tolerance of halotolerant bacteria (Bacillus tequilensis) was investigated and the bacterium was inoculated in the soil to mitigate salinity stress. The results revealed the highest floc yield and biofilm formation ability of B. tequilensis at 100 mM NaCl concentration. Fourier transformed infrared spectroscopy depicted the presence of carbohydrates and proteins which binds with sodium ions (Na+) and provide tolerance against salinity. Using PCR, plant growth-promoting bacterial genes viz., 1-aminocyclopropane-1-carboxylate deaminase and pyrroloquinoline quinone were successfully amplified from the genome of B. tequilensis. In the saline soil, B. tequilensis was inoculated and chickpea plants were grown. The bacterial strain improved the physiology, biochemistry, and antioxidant enzyme activities of the chickpea plant under salt stress. Plants inoculated with B. tequilensis exhibited higher relative water content, higher photosynthetic pigments, lower levels of hydrogen peroxide (H2O2) and malondialdehyde, and improved enzymatic activity for the scavenging of reactive oxygen species. The findings of this study suggest the sustainable use of B. tequilensis to mitigate the salinity stress of chickpea and other crops. This bacterium not only helps in the alleviation of the toxic effects of salt but also increases plant growth along with a reduction in crop losses due to salinity. Supplementary Information The online version contains supplementary material available at 10.1007/s12298-023-01280-1.
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Woods DF, Kozak IM, O'Gara F. Genome analysis and phenotypic characterization of Halomonas hibernica isolated from a traditional food process with novel quorum quenching and catalase activities. MICROBIOLOGY (READING, ENGLAND) 2022; 168. [PMID: 36099016 DOI: 10.1099/mic.0.001238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Traditional food processes can utilize bacteria to promote positive organoleptic qualities and increase shelf life. Wiltshire curing has a vital bacterial component that has not been fully investigated from a microbial perspective. During the investigation of a Wiltshire brine, a culturable novel bacterium of the genus Halomonas was identified by 16S rRNA gene (MN822133) sequencing and analysis. The isolate was confirmed as representing a novel species (Halomonas hibernica B1.N12) using a housekeeping (HK) gene phylogenetic tree reconstruction with the selected genes 16S rRNA, 23S rRNA, atpA, gyrB, rpoD and secA. The genome of the new isolate was sequenced and annotated and comparative genome analysis was conducted. Functional analysis revealed that the isolate has a unique phenotypic signature including high salt tolerance, a wide temperature growth range and substrate metabolism. Phenotypic and biochemical profiling demonstrated that H. hibernica B1.N12 possesses strong catalase activity which is an important feature for an industrial food processing bacterium, as it can promote an increased product shelf life and improve organoleptic qualities. Moreover, H. hibernica exhibits biocontrol properties based on its quorum quenching capabilities. Our work on this novel isolate advances knowledge on potential mechanistic interplays operating in complex microbial communities that mediate traditional food processes.
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Affiliation(s)
- David F Woods
- BIOMERIT Research Centre, School of Microbiology, University College Cork, Cork, Ireland
| | - Iwona M Kozak
- BIOMERIT Research Centre, School of Microbiology, University College Cork, Cork, Ireland
| | - Fergal O'Gara
- BIOMERIT Research Centre, School of Microbiology, University College Cork, Cork, Ireland.,Wal-yan Respiratory Research Centre, Telethon Kids Institute, Perth, WA, Australia.,Synthesis and Solid State Pharmaceutical Centre, University College Cork, Cork, Ireland
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Wang D, Chen H, Yang H, Yao S, Wu C. Incorporation of Exogenous Fatty Acids Enhances the Salt Tolerance of Food Yeast Zygosaccharomyces rouxii. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:10301-10310. [PMID: 34449211 DOI: 10.1021/acs.jafc.1c03896] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Fatty acids have great effects on the maintenance of the cell membrane structure, cell viability, and cell metabolisms. In this study, we sought to elucidate the effects of exogenous fatty acids on the salt tolerance of food yeast Zygosaccharomyces rouxii. Results showed that Z. rouxii can grow by using exogenous fatty acids (C12:0, C14:0, C16:0, C16:1, C18:0, C18:1, and C18:2) as the sole carbon source. Four fatty acids (C12:0, C16:0, C16:1, and C18:1) can improve the salt tolerance of cells, enhance the formation of the cell biofilm, regulate the chemical compositions, restore growth in the presence of cerulenin, regulate the contents of membrane fatty acids, and control the expression of key genes in the fatty acid metabolism. Our results reveal that Z. rouxii can synthesize membrane fatty acids from exogenous fatty acids and the supplementation of these fatty acids can override the need for de novo fatty acid biosynthesis.
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Affiliation(s)
- Dingkang Wang
- College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu 610065, China
| | - Hong Chen
- College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu 610065, China
| | - Huan Yang
- College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu 610065, China
| | - Shangjie Yao
- College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu 610065, China
| | - Chongde Wu
- College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu 610065, China
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12
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Jhuma TA, Rafeya J, Sultana S, Rahman MT, Karim MM. Isolation of Endophytic Salt-Tolerant Plant Growth-Promoting Rhizobacteria From Oryza sativa and Evaluation of Their Plant Growth-Promoting Traits Under Salinity Stress Condition. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.687531] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
The application of plant growth-promoting rhizobacteria (PGPR) as vital components for plant growth promotion against biotic and abiotic stresses could be a promising strategy to improve crop production in areas vulnerable to increasing salinity. Here, we isolated Seventy-five endophytic bacteria from roots of healthy Oryza sativa grown in a saline environment of the southern coastal region of Bangladesh. The endophytes in a culture of ~108 CFU/ml showed arrays of plant growth-promoting (PGP) activities: phytohormone (Indole acetic acid) production (1.20–60.13 μg/ ml), nutrient (phosphate) solubilization (0.02–1.81 μg/ml) and nitrogen fixation (70.24–198.70 μg/ml). Four genomically diverse groups were identified namely, Enterobacter, Achromobacter, Bacillus, and Stenotrophomonas using amplified ribosomal DNA restriction analysis followed by their respective 16S rDNA sequence analyses with that of the data available in NCBI GenBank. These four specific isolates showed tolerance to NaCl ranging from 1.37 to 2.57 mol/L in the nutrient agar medium. Under a 200 mmol/L salt stress in vitro, the bacteria in a culture of 108 CFU/ml exhibited competitive exopolysaccharide (EPS) production: Stenotrophomonas (65 μg/ml) and Bacillus (28 μg/ml), when compared to the positive control, Pseudomonas spp. (23.65 μg/ml), a phenomenon ably supported by their strong biofilm-producing abilities both in a microtiter plate assay, and in soil condition; and demonstrated by images of the scanning electron microscope (SEM). Overall, the isolated endophytic microorganisms revealed potential PGP activities that could be supported by their biofilm-forming ability under salinity stress, thereby building up a sustainable solution for ensuring food security in coastal agriculture under changing climate conditions.
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13
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Morcillo RJL, Manzanera M. The Effects of Plant-Associated Bacterial Exopolysaccharides on Plant Abiotic Stress Tolerance. Metabolites 2021; 11:337. [PMID: 34074032 PMCID: PMC8225083 DOI: 10.3390/metabo11060337] [Citation(s) in RCA: 78] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/19/2021] [Accepted: 05/21/2021] [Indexed: 11/16/2022] Open
Abstract
Plant growth-promoting rhizobacteria (PGPR) are beneficial soil microorganisms that can stimulate plant growth and increase tolerance to biotic and abiotic stresses. Some PGPR are capable of secreting exopolysaccharides (EPS) to protect themselves and, consequently, their plant hosts against environmental fluctuations and other abiotic stresses such as drought, salinity, or heavy metal pollution. This review focuses on the enhancement of plant abiotic stress tolerance by bacterial EPS. We provide a comprehensive summary of the mechanisms through EPS to alleviate plant abiotic stress tolerance, including salinity, drought, temperature, and heavy metal toxicity. Finally, we discuss how these abiotic stresses may affect bacterial EPS production and its role during plant-microbe interactions.
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Affiliation(s)
- Rafael J L Morcillo
- Institute for Water Research, Department of Microbiology, University of Granada, 18003 Granada, Spain
| | - Maximino Manzanera
- Institute for Water Research, Department of Microbiology, University of Granada, 18003 Granada, Spain
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14
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Moriou C, Lacroix D, Petek S, El-Demerdash A, Trepos R, Leu TM, Florean C, Diederich M, Hellio C, Debitus C, Al-Mourabit A. Bioactive Bromotyrosine Derivatives from the Pacific Marine Sponge Suberea clavata (Pulitzer-Finali, 1982). Mar Drugs 2021; 19:143. [PMID: 33800819 PMCID: PMC7999702 DOI: 10.3390/md19030143] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Revised: 02/25/2021] [Accepted: 03/02/2021] [Indexed: 01/04/2023] Open
Abstract
Chemical investigation of the South-Pacific marine sponge Suberea clavata led to the isolation of eight new bromotyrosine metabolites named subereins 1-8 (2-9) along with twelve known co-isolated congeners. The detailed configuration determination of the first representative major compound of this family 11-epi-fistularin-3 (11R,17S) (1) is described. Their chemical characterization was achieved by HRMS and integrated 1D and 2D NMR (nuclear magnetic resonance) spectroscopic studies and extensive comparison with literature data. For the first time, a complete assignment of the absolute configurations for stereogenic centers C-11/17 of the known members (11R,17S) 11-epi-fistularin-3 (1) and 17-deoxyfistularin-3 (10) was determined by a combination of chemical modifications, Mosher's technology, and ECD spectroscopy. Consequently, the absolute configurations of all our new isolated compounds 2-9 were determined by the combination of NMR, Mosher's method, ECD comparison, and chemical modifications. Interestingly, compounds 2-7 were obtained by chemical transformation of the major compound 11-epi-fistularin-3 (1). Evaluation for acetylcholinesterase inhibition (AChE), DNA methyltransferase 1 (DNMT1) modulating activity and antifouling activities using marine bacterial strains are also presented.
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Affiliation(s)
- Céline Moriou
- CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France; (C.M.); (D.L.); (A.E.-D.)
| | - Damien Lacroix
- CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France; (C.M.); (D.L.); (A.E.-D.)
| | - Sylvain Petek
- IRD, CNRS, Ifremer, LEMAR, Univ Brest, F-29280 Plouzane, France; (R.T.); (C.H.); (C.D.)
| | - Amr El-Demerdash
- CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France; (C.M.); (D.L.); (A.E.-D.)
| | - Rozenn Trepos
- IRD, CNRS, Ifremer, LEMAR, Univ Brest, F-29280 Plouzane, France; (R.T.); (C.H.); (C.D.)
| | - Tinihauarii Mareva Leu
- IRD, Ifremer, ILM, EIO, Univ de la Polynésie française, F-98713 Papeete, French Polynesia;
| | - Cristina Florean
- Laboratoire de Biologie Moléculaire et Cellulaire du Cancer, Hôpital Kirchberg, 9, rue Edward Steichen, L-2540 Luxembourg, Luxembourg;
| | - Marc Diederich
- Department of Pharmacy, Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea;
| | - Claire Hellio
- IRD, CNRS, Ifremer, LEMAR, Univ Brest, F-29280 Plouzane, France; (R.T.); (C.H.); (C.D.)
| | - Cécile Debitus
- IRD, CNRS, Ifremer, LEMAR, Univ Brest, F-29280 Plouzane, France; (R.T.); (C.H.); (C.D.)
| | - Ali Al-Mourabit
- CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France; (C.M.); (D.L.); (A.E.-D.)
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15
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Hu J, Tang Y, Ai F, Lin M, Ruan J. Biofilm for leaching precious metals from waste printed circuit boards using biocyanidation technology. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:123586. [PMID: 32795820 DOI: 10.1016/j.jhazmat.2020.123586] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 07/23/2020] [Accepted: 07/25/2020] [Indexed: 06/11/2023]
Abstract
Presently, biocyanidation technology is being usually adopted to recover precious metals from an increasing quantity of waste printed circuit boards. The main aim of this work was to investigate the biofilm formation of Pseudomonas and its ability to leach precious metals. Based on batch experiments, strain 113 showed the highest biofilm-forming activity in optimal culture conditions of pH 7.0, 25 °C, and 1/25 NB medium among the Pseudomonas strains isolated. Both low concentrations of Cu2+ (500 ppm) and Ag+ (2.5 ppm) promoted biofilm formation. Under the optimal culture conditions for biofilm formation, the concentration of CN- was up to 5.0 ppm. In the continuous silver leaching experiment, the Ag+ concentration reached 4.0 ppm and the leaching efficiency was 14.7 % at 7 d. The results of this study may contribute to the construction of a bioreactor used for continuous leaching of waste printed circuit boards in an attempt to recover precious metals. Our results may also aid in the industrialization of biocyanidation technology.
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Affiliation(s)
- Jian Hu
- School of Environmental Science and Engineering, Yangzhou University, 196 Huayang Xi Road, Yangzhou, People's Republic of China.
| | - Yun Tang
- School of Environmental Science and Engineering, Yangzhou University, 196 Huayang Xi Road, Yangzhou, People's Republic of China
| | - Fangqiu Ai
- School of Environmental Science and Engineering, Yangzhou University, 196 Huayang Xi Road, Yangzhou, People's Republic of China
| | - Mi Lin
- School of Environmental Science and Engineering, Sun Yat-Sen University, 135 Xingang Xi Road, Guangzhou, 510275, People's Republic of China
| | - Jujun Ruan
- School of Environmental Science and Engineering, Sun Yat-Sen University, 135 Xingang Xi Road, Guangzhou, 510275, People's Republic of China.
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16
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Athmika, Ghate SD, Arun AB, Rao SS, Kumar STA, Kandiyil MK, Saptami K, Rekha PD. Genome analysis of a halophilic bacterium Halomonas malpeensis YU-PRIM-29 T reveals its exopolysaccharide and pigment producing capabilities. Sci Rep 2021; 11:1749. [PMID: 33462335 PMCID: PMC7814019 DOI: 10.1038/s41598-021-81395-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 01/04/2021] [Indexed: 11/08/2022] Open
Abstract
Halomonas malpeensis strain YU-PRIM-29T is a yellow pigmented, exopolysaccharide (EPS) producing halophilic bacterium isolated from the coastal region. To understand the biosynthesis pathways involved in the EPS and pigment production, whole genome analysis was performed. The complete genome sequencing and the de novo assembly were carried out using Illumina sequencing and SPAdes genome assembler (ver 3.11.1) respectively followed by detailed genome annotation. The genome consists of 3,607,821 bp distributed in 18 contigs with 3337 protein coding genes and 53% of the annotated CDS are having putative functions. Gene annotation disclosed the presence of genes involved in ABC transporter-dependent pathway of EPS biosynthesis. As the ABC transporter-dependent pathway is also implicated in the capsular polysaccharide (CPS) biosynthesis, we employed extraction protocols for both EPS (from the culture supernatants) and CPS (from the cells) and found that the secreted polysaccharide i.e., EPS was predominant. The EPS showed good emulsifying activities against the petroleum hydrocarbons and its production was dependent on the carbon source supplied. The genome analysis also revealed genes involved in industrially important metabolites such as zeaxanthin pigment, ectoine and polyhydroxyalkanoate (PHA) biosynthesis. To confirm the genome data, we extracted these metabolites from the cultures and successfully identified them. The pigment extracted from the cells showed the distinct UV-Vis spectra having characteristic absorption peak of zeaxanthin (λmax 448 nm) with potent antioxidant activities. The ability of H. malpeensis strain YU-PRIM-29T to produce important biomolecules makes it an industrially important bacterium.
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Affiliation(s)
- Athmika
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - Sudeep D Ghate
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - A B Arun
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - Sneha S Rao
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - S T Arun Kumar
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - Mrudula Kinarulla Kandiyil
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - Kanekar Saptami
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India
| | - P D Rekha
- Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore, 575018, India.
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17
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Bhowmik S, Anand P, Das R, Sen T, Akhter Y, Das MC, De UC. Synthesis of new chrysin derivatives with substantial antibiofilm activity. Mol Divers 2021; 26:137-156. [PMID: 33438129 DOI: 10.1007/s11030-020-10162-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 11/25/2020] [Indexed: 11/26/2022]
Abstract
Multidrug resistance mechanism of microorganisms towards conventional antimicrobials nowadays faces a common health problem. So, searching and development of new antibacterials are in the frontier areas of biochemistry. Functionalizations of various natural products or synthesis of compounds through molecular modeling followed by virtual screening are the ways to obtain potential leads. Chrysin is one of the plant secondary metabolites and is ubiquitously present in majority of plants. It has multi-dimensional potentiality however, with a very low bioavailability causing a very low efficacy. Very few chrysin derivatives possessing antimicrobial activity with a low anti-biofilm efficacy have been found in the literature. Thus, it has been attempted to synthesize a series of new chrysin derivatives (CDs). In this study, twenty-two new derivatives have been synthesized via its 7-OH modulation and antibiofilm activity was evaluated against a model bacterium viz. Escherichia coli MTCC 40 (Gram negative). Eleven CDs coded as 2a, 2b, 2c, 2e, 2f, 2g, 2h, 2i, 3j, 3k and 3l have been found more potent compared to chrysin (precursor of CDs) against planktonic form of E. coli. Biofilm inhibition studies indicated a noteworthy results for 2a (93.57%), 2b (92.14%), 2f (92.14%) and 3l (93.57%) compared to chrysin (33.57%). E. coli motility was also highly restricted by 2a, 2b, 2f and 3l than chrysin at their sub-inhibitory concentrations. Solubility studies indicated an extended-release of 2a, 2b, 2f and 3l in physiological systems. Relatively higher bioavailability of 2a, 2b, 2f and 3l than chrysin was revealed from the dissolution experiments and was further validated through in silico ADME-based SAR analysis. Hence, this study is more interesting in regard to antibacterial potentiality of chrysin derivatives against Escherichia coli MTCC 40 (Gram negative). Thus, this article might be useful for further design and development of new leads in the context of biofilm-associated bacterial infections.
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Affiliation(s)
- Sukhen Bhowmik
- Department of Chemistry, Tripura University, Suryamaninagar, Tripura, 799022, India
| | - Pragya Anand
- Department of Biotechnology, School of Life Sciences, Babasaheb Bhimrao Ambedkar University, Vidya Vihar, Lucknow, Uttar Pradesh, 226025, India
| | - Riyanki Das
- Department of Medical Laboratory Technology, Women's Polytechnic, Hapania, Tripura, 799130, India
- Department of Nanotechnology, North-Eastern Hill University, Umshing Mawkynroh, Shillong, 793022, India
| | - Tirtharaj Sen
- Division of Electrical Engineering, Women's Polytechnic, Hapania, Tripura, 799130, India
| | - Yusuf Akhter
- Department of Biotechnology, School of Life Sciences, Babasaheb Bhimrao Ambedkar University, Vidya Vihar, Lucknow, Uttar Pradesh, 226025, India
| | - Manash C Das
- Department of Medical Laboratory Technology, Women's Polytechnic, Hapania, Tripura, 799130, India.
| | - Utpal C De
- Department of Chemistry, Tripura University, Suryamaninagar, Tripura, 799022, India.
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18
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Yuan Y, Zhou Z, Jiang J, Wang K, Yu S, Qiang J, Ming Q, An Y, Ye J, Wu D. Partial nitrification performance and microbial community evolution in the membrane bioreactor for saline stream treatment. BIORESOURCE TECHNOLOGY 2021; 320:124419. [PMID: 33242685 DOI: 10.1016/j.biortech.2020.124419] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2020] [Revised: 11/07/2020] [Accepted: 11/11/2020] [Indexed: 06/11/2023]
Abstract
Effects of salinity level and gradient on partial nitrification performance, sludge properties and microbial activities were investigated using partial nitrification membrane bioreactors (PN-MBRs). PN-MBRs obtained stable nitrite accumulation rate of 91.1% and ammonia removal of 64.8% at 10 g/L NaCl. 10 g/L NaCl obtained higher oxygen uptake rate than 5 g/L, and promoted the differentiation of ammonium-oxidizing bacteria (AOB) and nitrite-oxidizing bacteria. Salinity increased sludge flocs size, stimulated secretion of extracellular polymeric substances with high carbohydrates contents, but had insignificant impact on sludge settleability and dewaterability. Salt level and gradient were both important for microbial community evolution to salt-tolerant bacteria. PN-MBRs enriched aerobic AOBs (Nitrosomonas and norank_f_Nitrosomonadaceae) and anaerobic AOBs (Candidatus_Kuenenia and Candidatus_Brocadia) for partial nitrification, while salt gradients resulted in different metabolism pathways for nitrification even at the same salinity. Increasing salinity promoted hydroxylamine oxidizer in nitrification process evolving from Candidatus_Kuenenia and Candidatus_Brocadia to aerobic AOBs.
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Affiliation(s)
- Yao Yuan
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Zhen Zhou
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China.
| | - Jie Jiang
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Kaichong Wang
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Siqi Yu
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Jiaxin Qiang
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Qiang Ming
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Ying An
- Shanghai Engineering Research Center of Energy - Saving in Heat Exchange Systems, College of Environmental and Chemical Engineering, Shanghai University of Electric Power, Shanghai 200090, China
| | - Jianfeng Ye
- Shanghai Academy of Environmental Sciences, Shanghai 200233, China
| | - Deli Wu
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China; State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
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19
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Egamberdieva D, Wirth S, Bellingrath-Kimura SD, Mishra J, Arora NK. Salt-Tolerant Plant Growth Promoting Rhizobacteria for Enhancing Crop Productivity of Saline Soils. Front Microbiol 2019; 10:2791. [PMID: 31921005 PMCID: PMC6930159 DOI: 10.3389/fmicb.2019.02791] [Citation(s) in RCA: 175] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 11/18/2019] [Indexed: 11/13/2022] Open
Abstract
Soil salinity has emerged as a serious issue for global food security. It is estimated that currently about 62 million hectares or 20 percent of the world's irrigated land is affected by salinity. The deposition of an excess amount of soluble salt in cultivable land directly affects crop yields. The uptake of high amount of salt inhibits diverse physiological and metabolic processes of plants even impacting their survival. The conventional methods of reclamation of saline soil which involve scraping, flushing, leaching or adding an amendment (e.g., gypsum, CaCl2, etc.) are of limited success and also adversely affect the agro-ecosystems. In this context, developing sustainable methods which increase the productivity of saline soil without harming the environment are necessary. Since long, breeding of salt-tolerant plants and development of salt-resistant crop varieties have also been tried, but these and aforesaid conventional approaches are not able to solve the problem. Salt tolerance and dependence are the characteristics of some microbes. Salt-tolerant microbes can survive in osmotic and ionic stress. Various genera of salt-tolerant plant growth promoting rhizobacteria (ST-PGPR) have been isolated from extreme alkaline, saline, and sodic soils. Many of them are also known to mitigate various biotic and abiotic stresses in plants. In the last few years, potential PGPR enhancing the productivity of plants facing salt-stress have been researched upon suggesting that ST-PGPR can be exploited for the reclamation of saline agro-ecosystems. In this review, ST-PGPR and their potential in enhancing the productivity of saline agro-ecosystems will be discussed. Apart from this, PGPR mediated mechanisms of salt tolerance in different crop plants and future research trends of using ST-PGPR for reclamation of saline soils will also be highlighted.
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Affiliation(s)
- Dilfuza Egamberdieva
- CAS Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Ürümqi, China
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
- Faculty of Biology, National University of Uzbekistan, Tashkent, Uzbekistan
| | - Stephan Wirth
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
| | | | - Jitendra Mishra
- DST-CPR, Babasaheb Bhimrao Ambedkar University, Lucknow, India
| | - Naveen K. Arora
- Department of Environmental Science, Babasaheb Bhimrao Ambedkar University, Lucknow, India
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20
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Alibrahim A, Al-Gharabally D, Mahmoud H, Dittrich M. Proto-dolomite formation in microbial consortia dominated by Halomonas strains. Extremophiles 2019; 23:765-781. [PMID: 31576454 DOI: 10.1007/s00792-019-01135-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Accepted: 09/13/2019] [Indexed: 02/01/2023]
Abstract
Microbes can be found in hypersaline environments forming diverse populations with complex ecological interactions. Microbes in such environments were found to be involved in the formation of minerals including dolomite, a mineral of economic importance and whose origin has been long-debated. Various reports on in vitro experiments using pure cultures provided evidence for the microbial role in dolomite formation. However, culturing experiments have been limited in scope and do not fully address the possible interactions of the naturally occurring microbial communities; consequently, the ability of microbes as a community to form dolomite has been investigated in this study. Our experiments focused on examining the microbial composition by culturing aerobic heterotrophs from the top hypersaline sediments of Al-Khiran sabkha in Kuwait, a modern dolomite-forming environment. The objectives of this study were to assess the ability of two microbial consortia to form dolomite using enrichment culture experiments, mineralogy, and metagenomics. Proto-dolomite was formed by a microbial community dominated by Halomonas strains whereby degradation of the extracellular polymeric substances (EPS) was observed and the pH changed from 7.00 to 8.58. Conversely, proto-dolomite was not observed within a microbial community dominated by Clostridiisalibacter in which EPS continuously accumulated and the pH slightly changed from 7.00 to 7.29.
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Affiliation(s)
- Ammar Alibrahim
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON, M1C 1A4, Canada.
| | - Dunia Al-Gharabally
- Department of Biological Sciences, Faculty of Science, Kuwait University, P.O. Box 5969, 13060, Safat, Kuwait
| | - Huda Mahmoud
- Department of Biological Sciences, Faculty of Science, Kuwait University, P.O. Box 5969, 13060, Safat, Kuwait
| | - Maria Dittrich
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON, M1C 1A4, Canada
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21
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Alleviation of Salinity Stress on Some Growth Parameters of Wheat by Exopolysaccharide-Producing Bacteria. IRANIAN JOURNAL OF SCIENCE AND TECHNOLOGY TRANSACTION A-SCIENCE 2019. [DOI: 10.1007/s40995-019-00753-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Xaxiri NA, Nikouli E, Berillis P, Kormas KA. Bacterial biofilm development during experimental degradation of Melicertus kerathurus exoskeleton in seawater. AIMS Microbiol 2019; 4:397-412. [PMID: 31294223 PMCID: PMC6604942 DOI: 10.3934/microbiol.2018.3.397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Accepted: 05/29/2018] [Indexed: 11/28/2022] Open
Abstract
Chitinolytic bacteria are widespread in marine and terrestrial environment, and this is rather a reflection of their principle growth substrate's ubiquity, chitin, in our planet. In this paper, we investigated the development of naturally occurring bacterial biofilms on the exoskeleton of the shrimp Melicertus kerathurus during its degradation in sea water. During a 12-day experiment with exoskeleton fragments in batch cultures containing only sea water as the growth medium at 18 °C in darkness, we analysed the formation and succession of biofilms by scanning electron microscopy and 16S rRNA gene diversity by next generation sequencing. Bacteria belonging to the γ- and α-Proteobacteria and Bacteroidetes showed marked (less or more than 10%) changes in their relative abundance from the beginning of the experiment. These bacterial taxa related to known chitinolytic bacteria were the Pseudolateromonas porphyrae, Halomonasaquamarina, Reinekea aestuarii, Colwellia asteriadis and Vibrio crassostreae. These bacteria could be considered as appropriate candidates for the degradation of chitinous crustacean waste from the seafood industry as they dominated in the biofilms developed on the shrimp's exoskeleton in natural sea water with no added substrates and the degradation of the shrimp exoskeleton was also evidenced.
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Affiliation(s)
- Nikolina-Alexandra Xaxiri
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, 38446 Volos, Greece
| | - Eleni Nikouli
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, 38446 Volos, Greece
| | - Panagiotis Berillis
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, 38446 Volos, Greece
| | - Konstantinos Ar Kormas
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, 38446 Volos, Greece
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Ikram S, Heikal A, Finke S, Hofgaard A, Rehman Y, Sabri AN, Økstad OA. Bacillus cereus biofilm formation on central venous catheters of hospitalised cardiac patients. BIOFOULING 2019; 35:204-216. [PMID: 30950292 DOI: 10.1080/08927014.2019.1586889] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2018] [Revised: 02/06/2019] [Accepted: 02/16/2019] [Indexed: 06/09/2023]
Abstract
Formation of bacterial biofilms is a risk with many in situ medical devices. Biofilm-forming Bacillus species are associated with potentially life-threatening catheter-related blood stream infections in immunocompromised patients. Here, bacteria were isolated from biofilm-like structures within the lumen of central venous catheters (CVCs) from two patients admitted to cardiac hospital wards. Isolates belonged to the Bacillus cereus group, exhibited strong biofilm formation propensity, and mapped phylogenetically close to the B. cereus emetic cluster. Together, whole genome sequencing and quantitative PCR confirmed that the isolates constituted the same strain and possessed a range of genes important for and up-regulated during biofilm formation. Antimicrobial susceptibility testing demonstrated resistance to trimethoprim-sulphamethoxazole, clindamycin, penicillin and ampicillin. Inspection of the genome revealed several chromosomal β-lactamase genes and a sulphonamide resistant variant of folP. This study clearly shows that B. cereus persisting in hospital ward environments may constitute a risk factor from repeated contamination of CVCs.
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Affiliation(s)
- Samman Ikram
- a Department of Microbiology & Molecular Genetics , University of the Punjab , Lahore , Pakistan
- b Centre for Integrative Microbial Evolution and Section for Pharmacology and Pharmaceutical Biosciences, Department of Pharmacy , University of Oslo , Oslo , Norway
| | - Adam Heikal
- b Centre for Integrative Microbial Evolution and Section for Pharmacology and Pharmaceutical Biosciences, Department of Pharmacy , University of Oslo , Oslo , Norway
| | - Sarah Finke
- b Centre for Integrative Microbial Evolution and Section for Pharmacology and Pharmaceutical Biosciences, Department of Pharmacy , University of Oslo , Oslo , Norway
| | - Antje Hofgaard
- c Department of Biosciences , University of Oslo , Oslo , Norway
| | - Yasir Rehman
- a Department of Microbiology & Molecular Genetics , University of the Punjab , Lahore , Pakistan
| | - Anjum Nasim Sabri
- a Department of Microbiology & Molecular Genetics , University of the Punjab , Lahore , Pakistan
| | - Ole Andreas Økstad
- b Centre for Integrative Microbial Evolution and Section for Pharmacology and Pharmaceutical Biosciences, Department of Pharmacy , University of Oslo , Oslo , Norway
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Exopolysaccharides and Biofilms in Mitigating Salinity Stress: The Biotechnological Potential of Halophilic and Soil-Inhabiting PGPR Microorganisms. SOIL BIOLOGY 2019. [DOI: 10.1007/978-3-030-18975-4_6] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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25
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Liu X, Yin H, Tang S, Feng M, Peng H, Lu G, Liu Z, Dang Z. Effects of single and combined copper/perfluorooctane sulfonate on sequencing batch reactor process and microbial community in activated sludge. BIORESOURCE TECHNOLOGY 2017; 238:407-415. [PMID: 28458174 DOI: 10.1016/j.biortech.2017.04.045] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Revised: 04/10/2017] [Accepted: 04/12/2017] [Indexed: 06/07/2023]
Abstract
Long-term exposure experiments with single and combined pollutants of copper (Cu)/perfluorooctane sulfonate (PFOS) were conducted to explore the influence on activated sludge in SBRs. Compared with the control, the removal of organics, nitrogen and phosphorus in the presence of PFOS exhibited no apparent difference, but reduced in different degrees when Cu and Cu/PFOS existed. PFOS exposure deteriorated the settling performance of activated sludge with SVI value and amount of extracellular polymeric substance (EPS) increasing, but posed little impacts on microbial activity (dehydrogenase, protease) and antioxidant activity (SOD, CAT). Under Cu and Cu/PFOS loading, dehydrogenase and protease activity were observed to decrease as well as SOD and CAT activity. The sequencing results revealed that bacterial richness and community diversity reduced under Cu and Cu/PFOS exposure. Overall, adverse effect of combined pollution was lower than that of single Cu in long-time due to antagonistic effect existed between Cu and PFOS.
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Affiliation(s)
- Xintong Liu
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Hua Yin
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China.
| | - Shaoyu Tang
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Mi Feng
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Hui Peng
- Department of Chemistry, Jinan University, Guangzhou 510632, Guangdong, China
| | - Guining Lu
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Zehua Liu
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
| | - Zhi Dang
- Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangdong Provincial Engineering and Technology Research Center for Environmental Risk Prevention and Emergency Disposal, School of Environment and Energy, South China University of Technology, Guangzhou 510006, China
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26
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Gupta P, Sarkar A, Sandhu P, Daware A, Das M, Akhter Y, Bhattacharjee S. Potentiation of antibiotic againstPseudomonas aeruginosabiofilm: a study with plumbagin and gentamicin. J Appl Microbiol 2017; 123:246-261. [DOI: 10.1111/jam.13476] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Revised: 03/21/2017] [Accepted: 04/17/2017] [Indexed: 01/02/2023]
Affiliation(s)
- P. Gupta
- Department of Molecular Biology and Bioinformatics; Tripura University (A Central University); Suryamaninagar Tripura India
| | - A. Sarkar
- Department of Molecular Biology and Bioinformatics; Tripura University (A Central University); Suryamaninagar Tripura India
| | - P. Sandhu
- Centre for Computational Biology and Bioinformatics; School of Life Sciences; Central University of Himachal Pradesh; Shahpur Himachal Pradesh India
| | - A. Daware
- Department of Molecular Biology and Bioinformatics; Tripura University (A Central University); Suryamaninagar Tripura India
| | - M.C. Das
- Department of Molecular Biology and Bioinformatics; Tripura University (A Central University); Suryamaninagar Tripura India
| | - Y. Akhter
- Centre for Computational Biology and Bioinformatics; School of Life Sciences; Central University of Himachal Pradesh; Shahpur Himachal Pradesh India
| | - S. Bhattacharjee
- Department of Molecular Biology and Bioinformatics; Tripura University (A Central University); Suryamaninagar Tripura India
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27
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Acosta-Rubí S, Campocosio AT, Montes-Horcasitas MDC, Quintanar-Vera L, Esparza-García F, Rodríguez-Vázquez R. Production of a halotolerant biofilm from green coffee beans immobilized on loofah fiber (Luffa cylindrica) and its effect on phenanthrene degradation in seawater. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2017; 52:632-640. [PMID: 28301290 DOI: 10.1080/10934529.2017.1294965] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
A biofilm developed from low quality green coffee beans was tested for its capacity to degrade the polynuclear aromatic hydrocarbon (PAH), phenanthrene (Phe), in seawater. Microorganisms were immobilized on two types of Luffa cylindrica (with three and four placental cavities), and the effects of moisture content (20, 30 and 40% of water holding capacity) and particle size (<0.42 mm, 0.42-0.86 mm and 0.86-2.0 mm) of green coffee beans on microbial activity were considered. Biofilm growth determined by respirometry showed a highest microbial activity at a moisture content of 40% and particle size of 0.42-0.86 mm. The loofah fiber with three placental cavities showed the highest adherence of microorganisms. The kinetics of microbial growth in both seawater and distilled water and the scanning electron microscopies indicated that the microorganisms associated with green coffee beans are halotolerant. In fact, I-GCB-SW-G biofilm degraded 67.56% of Phe (50 mg L-1) in seawater, at a significantly higher rate than in distilled water (I-GCB-DW-W).
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Affiliation(s)
- Sonia Acosta-Rubí
- a Department of Biotechnology and Bioengineering , Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional , Mexico City , Mexico
| | | | - María Del Carmen Montes-Horcasitas
- a Department of Biotechnology and Bioengineering , Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional , Mexico City , Mexico
| | - Liliana Quintanar-Vera
- c Department of Chemistry , Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional , Mexico City , Mexico
| | - Fernando Esparza-García
- a Department of Biotechnology and Bioengineering , Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional , Mexico City , Mexico
| | - Refugio Rodríguez-Vázquez
- a Department of Biotechnology and Bioengineering , Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional , Mexico City , Mexico
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28
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Rodríguez-Sánchez A, Leyva-Díaz JC, Poyatos JM, González-López J. Performance and kinetics of membrane and hybrid moving bed biofilm-membrane bioreactors treating salinity wastewater. AIChE J 2017. [DOI: 10.1002/aic.15694] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Alejandro Rodríguez-Sánchez
- Institute of Water Research; University of Granada; Granada 18071 Spain
- Dept. of Civil Engineering; University of Granada; Campus de Fuentenueva Granada 18071 Spain
| | - Juan Carlos Leyva-Díaz
- Institute of Water Research; University of Granada; Granada 18071 Spain
- Dept. of Civil Engineering; University of Granada; Campus de Fuentenueva Granada 18071 Spain
| | - José Manuel Poyatos
- Institute of Water Research; University of Granada; Granada 18071 Spain
- Dept. of Civil Engineering; University of Granada; Campus de Fuentenueva Granada 18071 Spain
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29
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Das MC, Paul S, Gupta P, Tribedi P, Sarkar S, Manna D, Bhattacharjee S. 3-Amino-4-aminoximidofurazan derivatives: small molecules possessing antimicrobial and antibiofilm activity against Staphylococcus aureus and Pseudomonas aeruginosa. J Appl Microbiol 2016; 120:842-59. [PMID: 26785169 DOI: 10.1111/jam.13063] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Revised: 12/19/2015] [Accepted: 01/12/2016] [Indexed: 12/18/2022]
Abstract
AIM The therapeutic treatment of microbial infections involving biofilm becomes quite challenging because of its increasing antibiotic resistance capacities. Towards this direction, in the present study we have evaluated the antibiofilm property of synthesized 3-amino-4-aminoximidofurazan compounds having polyamine skeleton. These derivatives were synthesized by incorporating furazan and biguanide moieties. METHODS AND RESULTS Different 3-amino-4-aminoximidofurazan derivatives (PI1-4) were synthesized via protic acid catalysis and subsequently characterized by (1) H NMR and (13) C NMR spectra, recorded at 400 and 100 MHz respectively. We have tested the antimicrobial and antibiofilm activities of these synthetic derivatives (PI1-4) against both Staphylococcus aureus and Pseudomonas aeruginosa. The compounds so tested were also compared with standard antibiotics namely Tobramycin (Ps. aeruginosa) and Azithromycin (Staph. aureus) which were used as a positive control in all experimental sets. All these compounds (PI1-4) exhibited moderate to significant antimicrobial activities against both micro-organisms wherein compound PI3 showed maximum activity. Biofilm inhibition of both micro-organisms was then evaluated by crystal violet and safranin staining, estimation of biofilm total protein and microscopy methods using sub-MIC dose of these compounds. Results showed that all compounds executed anti biofilm activity against both Staph. aureus and Ps. aeruginosa wherein compound PI3 exhibited maximum activity. In relation with microbial biofilm inhibition, we have observed reduction in bacterial motility, proteolytic activity and secreted exo-polysaccharide (EPS) from both Staph. aureus and Ps. aeruginosa when they were grown in presence of these compounds. While addressing the issue of toxicity on host, we have observed that these molecules exhibited minimum level of R.B.C degradation. CONCLUSION These findings establish the antibacterial and anti biofilm properties of 3-amino-4-aminoximidofurazan derivatives (PI1-4). SIGNIFICANCE AND IMPACT OF THE STUDY Therefore, our current findings demonstrate that 3-amino-4-aminoximidofurazan derivatives (PI1-4) may hold promise to be effective biofilm and microbial inhibitors that may be clinically significant.
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Affiliation(s)
- M C Das
- Department of Molecular Biology & Bioinformatics, Tripura University, Agartala, Tripura, India
| | - S Paul
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam, India
| | - P Gupta
- Department of Molecular Biology & Bioinformatics, Tripura University, Agartala, Tripura, India
| | - P Tribedi
- Department of Microbiology, Assam Don Bosco University, Azara, Assam, India
| | - S Sarkar
- Department of Molecular Biology & Bioinformatics, Tripura University, Agartala, Tripura, India
| | - D Manna
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam, India
| | - S Bhattacharjee
- Department of Molecular Biology & Bioinformatics, Tripura University, Agartala, Tripura, India
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30
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Al-Beloshei NE, Al-Awadhi H, Al-Khalaf RA, Afzal M. A comparative study of fatty acid profile and formation of biofilm inGeobacillus gargensisexposed to variable abiotic stress. Can J Microbiol 2015; 61:48-59. [DOI: 10.1139/cjm-2014-0615] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Understanding bacterial fatty acid (FA) profile has a great taxonomic significance as well as clinical importance for diagnosis issues. Both the composition and nature of membrane FAs change under different nutritional, biotic and (or) abiotic stresses, and environmental stress. Bacteria produce both odd-carbon as well as branched-chain fatty acids (BCFAs). This study was designed to examine the effect of abiotic pressure, including salinity, temperature, pH, and oxinic stress on the growth, development, and FA profile in thermophilic Geobacillus gargensis. Under these stresses, 3 parametric ratios, 2-methyl fatty acids/3-methyl fatty acids (iso-/anteiso-FAs), BCFAs/straight-chain saturated fatty acids (SCSFA), and SCSFAs/straight-chain unsaturated fatty acids (SCUFA), in addition to total lipids affected by variable stresses were measured. Our results indicate that the ratio of total iso-/anteiso-FAs increased at the acidic pH range of 4.1–5.2 and decreased with increasing pH. The reverse was true for salt stress when iso-/anteiso-FAs ratio increased with salt concentration. The BCFAs/SCSFAs and SCSFAs/SCUFAs ratios increased at neutral and alkaline pH and high salt concentration, reduced incubation time, and comparatively high temperature (55–65 °C) of the growth medium. The bacterial total lipid percentage deceased with increasing salt concentration, incubation period, but it increased with temperature. The formation of extracellular polymeric substances was observed under all stress conditions and with the addition of sodium dodecyl sulfate (2 and 5 mmol/L) to the growth medium. The membrane phospholipid composition of the bacterium was analyzed by thin-layer chromatography.
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Affiliation(s)
| | - Husain Al-Awadhi
- Department of Biological Sciences, Faculty of Science, Kuwait University, Kuwait
| | - Rania A. Al-Khalaf
- Department of Biological Sciences, Faculty of Science, Kuwait University, Kuwait
| | - Mohammad Afzal
- Department of Biological Sciences, Faculty of Science, Kuwait University, Kuwait
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31
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Rousseau R, Santaella C, Achouak W, Godon JJ, Bonnafous A, Bergel A, Délia ML. Correlation of the Electrochemical Kinetics of High-Salinity-Tolerant Bioanodes with the Structure and Microbial Composition of the Biofilm. ChemElectroChem 2014. [DOI: 10.1002/celc.201402153] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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32
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Berdugo-Clavijo C, Gieg LM. Conversion of crude oil to methane by a microbial consortium enriched from oil reservoir production waters. Front Microbiol 2014; 5:197. [PMID: 24829563 PMCID: PMC4017130 DOI: 10.3389/fmicb.2014.00197] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Accepted: 04/14/2014] [Indexed: 11/13/2022] Open
Abstract
The methanogenic biodegradation of crude oil is an important process occurring in petroleum reservoirs and other oil-containing environments such as contaminated aquifers. In this process, syntrophic bacteria degrade hydrocarbon substrates to products such as acetate, and/or H2 and CO2 that are then used by methanogens to produce methane in a thermodynamically dependent manner. We enriched a methanogenic crude oil-degrading consortium from production waters sampled from a low temperature heavy oil reservoir. Alkylsuccinates indicative of fumarate addition to C5 and C6 n-alkanes were identified in the culture (above levels found in controls), corresponding to the detection of an alkyl succinate synthase encoding gene (assA/masA) in the culture. In addition, the enrichment culture was tested for its ability to produce methane from residual oil in a sandstone-packed column system simulating a mature field. Methane production rates of up to 5.8 μmol CH4/g of oil/day were measured in the column system. Amounts of produced methane were in relatively good agreement with hydrocarbon loss showing depletion of more than 50% of saturate and aromatic hydrocarbons. Microbial community analysis revealed that the enrichment culture was dominated by members of the genus Smithella, Methanosaeta, and Methanoculleus. However, a shift in microbial community occurred following incubation of the enrichment in the sandstone columns. Here, Methanobacterium sp. were most abundant, as were bacterial members of the genus Pseudomonas and other known biofilm forming organisms. Our findings show that microorganisms enriched from petroleum reservoir waters can bioconvert crude oil components to methane both planktonically and in sandstone-packed columns as test systems. Further, the results suggest that different organisms may contribute to oil biodegradation within different phases (e.g., planktonic vs. sessile) within a subsurface crude oil reservoir.
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Affiliation(s)
| | - Lisa M. Gieg
- Petroleum Microbiology Research Group, Department of Biological Sciences, University of CalgaryCalgary, AB, Canada
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