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Xinxin Z, Shuang Y, Xunming Z, Shang W, Juhong Z, Jinghui X. TMT-Based Quantitative Proteomic Profiling of Overwintering Lissorhoptrus oryzophilus. Front Physiol 2020; 10:1623. [PMID: 32038298 PMCID: PMC6985562 DOI: 10.3389/fphys.2019.01623] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 12/24/2019] [Indexed: 01/05/2023] Open
Abstract
Adaptations to low temperature play a critical role in restricting the geographical distribution of insects. Decreasing day lengths and temperatures trigger seasonal cold adaptations in insects. These adaptions include changes in expression at the miRNA, mRNA and protein levels. The rice water weevil (RWW), Lissorhoptrus oryzophilus, introduced from the Mississippi River, is a globally invasive pest of wetland rice that can survive at the northern border of China. To investigate the changes in expression at the protein level in overwintering female RWW adults, 6-plex tandem mass tags (TMTs) were used in overwintering and summer adults. By using a proteome database available for Curculionidae, 1077 proteins were quantified, 183 of which differed significantly between the overwintering and summer samples. To further understand these differentially expressed proteins (DEPs), bioinformatics analyses such as gene ontology (GO) enrichment analyses were performed. DEPs associated with the terms binding, structural molecule activity, catalytic activity, multicellular organismal process, extracellular region, chitin binding, metabolic process, intracellular part and organic cyclic compound binding were altered by selection during winter. The changes in the expression of these proteins suggest that the proteins are important for RWW survival in winter.
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Affiliation(s)
- Zhang Xinxin
- College of Plant Sciences, Jilin University, Changchun, China
| | - Yang Shuang
- College of Plant Sciences, Jilin University, Changchun, China
- College of Life Science and Oceanography, Shenzhen University, Shenzhen, China
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Zhang Xunming
- College of Plant Sciences, Jilin University, Changchun, China
| | - Wang Shang
- College of Plant Sciences, Jilin University, Changchun, China
| | - Zhang Juhong
- College of Plant Sciences, Jilin University, Changchun, China
| | - Xi Jinghui
- College of Plant Sciences, Jilin University, Changchun, China
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Miron LT, Postma RP, Bosch G, Eppink MH. Preliminary Evaluation of Aqueous Protein Extraction from Black Soldier Fly Larvae (Hermetia illucens L.). Ind Biotechnol (New Rochelle N Y) 2019. [DOI: 10.1089/ind.2019.0017] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Affiliation(s)
- Lucian T. Miron
- Bioprocess Engineering, Department of Agrotechnology and Food Sciences, Wageningen University, Wageningen, The Netherlands
| | - Richard P. Postma
- Bioprocess Engineering, Department of Agrotechnology and Food Sciences, Wageningen University, Wageningen, The Netherlands
| | - Guido Bosch
- Animal Nutrition Group, Department of Animal Sciences, Wageningen University, Wageningen, The Netherlands
| | - Michel H.M. Eppink
- Bioprocess Engineering, Department of Agrotechnology and Food Sciences, Wageningen University, Wageningen, The Netherlands
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Bi R, Pan Y, Shang Q, Peng T, Yang S, Wang S, Xin X, Liu Y, Xi J. Comparative proteomic analysis in Aphis glycines Mutsumura under lambda-cyhalothrin insecticide stress. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2016; 19:90-96. [PMID: 27395796 DOI: 10.1016/j.cbd.2016.06.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2015] [Revised: 06/08/2016] [Accepted: 06/22/2016] [Indexed: 12/16/2022]
Abstract
Lambda-cyhalothrin is now widely used in China to control the soybean aphid Aphis glycines. To dissect the resistance mechanism, a laboratory-selected resistant soybean aphid strain (CRR) was established with a 43.42-fold resistance ratio to λ-cyhalothrin than the susceptible strain (CSS) in adult aphids. In this study, a comparative proteomic analysis between the CRR and CSS strains revealed important differences between the susceptible and resistant strains of soybean aphids for λ-cyhalothrin. Approximately 493 protein spots were detected in two-dimensional polyacrylamide gel electrophoresis (2-DE). Thirty-six protein spots displayed differential expression of >2-fold in the CRR strain compared to the CSS strain. Out of these 36 protein spots, 21 had elevated and 15 had decreased expression. Twenty-four differentially expressed proteins were identified by MALDI TOF MS/MS and categorized into the functional groups cytoskeleton-related protein, carbohydrate and energy metabolism, protein folding, antioxidant system, and nucleotide and amino acid metabolism. Function analysis showed that cytoskeleton-related proteins and energy metabolism proteins have been associated with the λ-cyhalothrin resistance of A. glycines. The differential expression of λ-cyhalothrin responsive proteins reflected the overall change in cellular structure and metabolism after insecticide treatment in aphids. In summary, our studies improve understanding of the molecular mechanism resistance of soybean aphid to lambda-cyhalothrin, which will facilitate the development of rational approaches to improve the management of this pest and to improve the yield of soybean.
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Affiliation(s)
- Rui Bi
- College of Plant Science, Jilin University, ChangChun 130062, PR China; College of Agronomy, Jilin Agricultural University, ChangChun 130118, PR China
| | - Yiou Pan
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Qingli Shang
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Tianfei Peng
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Shuang Yang
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Shang Wang
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Xuecheng Xin
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Yan Liu
- College of Plant Science, Jilin University, ChangChun 130062, PR China
| | - Jinghui Xi
- College of Plant Science, Jilin University, ChangChun 130062, PR China.
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Pineda Guerra Y, Betancur Echeverri J, Pedroza-Díaz J, Delgado-Trejos E, Röthlisberger S. Análisis proteómico del veneno de la abeja africanizada: comparación de métodos de extracción. ACTA BIOLÓGICA COLOMBIANA 2016. [DOI: 10.15446/abc.v21n3.54046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
La abeja africanizada es la más común en la apicultura colombiana y a su veneno (apitoxina) se le han atribuido propiedades terapéuticas para diferentes enfermedades, sin mayor soporte científico. Al revisar en la literatura los reportes publicados sobre el análisis proteómico de la apitoxina, se encontraron cuatro métodos distintos para la extracción de proteínas de la apitoxina. El primer método consiste en resuspender la apitoxina en Urea 7 M, precipitar con acetona y finalmente resuspender en Urea 7 M y CHAPS 4 %. Para el segundo método se resuspende la apitoxina en buffer de lisis, se precipita con ácido tricloroacético, y luego se resuspende en Urea 7 M y CHAPS 4 %. El tercer método es igual al anterior, excepto que la precipitación se realiza con acetona en vez de ácido tricloroacético. Finalmente, el cuarto método consiste en resuspender la apitoxina en agua destilada, precipitar con acetona y resuspender en Urea 7 M y CHAPS 4 %. Este trabajo se enfocó en comparar el desempeño de estos cuatro métodos de extracción y determinar el método con el mejor resultado en cuanto a la concentración e integridad obtenida de las proteínas. De los distintos métodos evaluados, se encontró que los mejores resultados en cuanto a concentración de proteínas se obtuvieron con la resuspensión de apitoxina en buffer de lisis y precipitación con acetona (método 3) y con el método de resuspensión de apitoxina en agua destilada y precipitación con acetona (método 4). De estos, el mejor método de extracción en cuanto a integridad de las proteínas y perfil proteómico fue el de resuspensión de apitoxina en buffer de lisis seguido de precipitación con acetona (método 3).
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Zhang JH, Wang S, Yang S, Yi J, Liu Y, Xi JH. DIFFERENTIAL PROTEOME ANALYSIS OF THE MALE AND FEMALE ANTENNAE FROM Holotrichia parallela. ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY 2016; 92:274-287. [PMID: 27396371 DOI: 10.1002/arch.21338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
To understand the olfactory mechanisms of Holotrichia parallela antennae in detecting volatile compounds in the environment, protein profiles of H. parallela antennae were analyzed using two-dimensional electrophoresis followed by mass spectrometry and bioinformatics analyses. Approximately 1,100 protein spots in silver staining gel were detected. Quantitative image analysis revealed that in total 47 protein spots showed significant changes in different genders of adult antennae. Thirty-five differentially expressed proteins were identified by Matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF/TOF) tandem mass spectrometer, among which 65.7% are involved in carbohydrate and energy metabolism, antioxidant system, transport, and amino acid/nucleotide metabolism. Some proteins identified here have not been reported previously in insect antennae. Identified male-biased proteins included odorant-binding protein 4, pheromone-binding protein-related protein 2, odorant-binding protein 14, prophenoloxidase-I, acyl-CoA dehydrogenase, aldo-keto reductase-like, carbamoyl phosphate synthetase, etc. whereas some proteins are female biased, such as antennae-rich cytochrome P450, aldehyde dehydrogenase, and putative glutamine synthetase. Alterations in the levels of some proteins were further confirmed by real time polymerase chain reaction (RT-PCR). The proteomic resources displayed here are valuable for the discovery of proteins from H. parallela antennae.
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Affiliation(s)
- Ju-Hong Zhang
- College of Plant Science, Jilin University, ChangChun, P. R. China
| | - Shang Wang
- College of Plant Science, Jilin University, ChangChun, P. R. China
| | - Shuang Yang
- College of Plant Science, Jilin University, ChangChun, P. R. China
| | - Jiankun Yi
- College of Plant Science, Jilin University, ChangChun, P. R. China
| | - Yan Liu
- College of Plant Science, Jilin University, ChangChun, P. R. China
| | - Jing-Hui Xi
- College of Plant Science, Jilin University, ChangChun, P. R. China
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Shang Q, Pan Y, Peng T, Yang S, Lu X, Wang Z, Xi J. PROTEOMICS ANALYSIS OF OVEREXPRESSED PLASMA PROTEINS IN RESPONSE TO COLD ACCLIMATION IN Ostrinia furnacalis. ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY 2015; 90:195-208. [PMID: 26440752 DOI: 10.1002/arch.21302] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Many insects in temperate regions overwinter in diapause. In these insects, one of the metabolic adaptations to cold stress is the synthesis of responsive proteins. Using proteomic analysis, an investigation aimed to a better understanding of the molecular adaptation mechanisms to cold stress was carried out in Ostrinia furnacalis larva. Proteins were extracted from the larval hemolymph collected from both control and overwintering larva. By polyethylene glycol precipitation, approximately 560 protein spots were separated and visualized on two-dimensional (2D) gels after silver staining. Eighteen protein spots were found to be upregulated in overwinter larval plasma in different patterns. As an initial work, 13 of these proteins were identified using MALDI TOF/TOF MS. The differentially overexpressed proteins include heat shock 70 kDa cognate protein, small heat shock protein (sHSP), putative aliphatic nitrilase, arginine kinase, phosphoglyceromutase, triosephosphateisomerase, and glutathione transferase. Alterations in the levels of these proteins were further confirmed by qPCR. This study is the first analysis of differentially expressed plasma proteins in O. furnacalis diapause larvae under extremely low temperature conditions and gives new insights into the acclimation mechanisms responsive to cold stress. Our results also support the idea that energy metabolism, alanine and proline metabolism, and antioxidative reaction act in the cold acclimation of O. furnacalis diapause larvae.
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Affiliation(s)
- Qingli Shang
- College of Plant Science, Jilin University, Changchun, P.R. China
| | - Yiou Pan
- College of Plant Science, Jilin University, Changchun, P.R. China
| | - Tianfei Peng
- College of Plant Science, Jilin University, Changchun, P.R. China
| | - Shuang Yang
- College of Plant Science, Jilin University, Changchun, P.R. China
| | - Xin Lu
- Jilin Academy of Agricultural Sciences, Changchun, P.R. China
| | - Zhenying Wang
- The State Key Lab for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing, P.R. China
| | - Jinghui Xi
- College of Plant Science, Jilin University, Changchun, P.R. China
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Xi J, Pan Y, Wei Z, Yang C, Gao X, Peng T, Bi R, Liu Y, Xin X, Shang Q. Proteomics-based identification and analysis proteins associated with spirotetramat tolerance in Aphis gossypii Glover. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2015; 119:74-80. [PMID: 25868820 DOI: 10.1016/j.pestbp.2015.02.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2014] [Revised: 02/05/2015] [Accepted: 02/05/2015] [Indexed: 06/04/2023]
Abstract
Spirotetramat were now widely used for control insecticides resistant aphids since 2011 in China. In order to elucidate the possible resistance mechanism, a laboratory selected resistant strain (SR) of cotton aphid was established with a 578.93-fold and 14.91-fold resistance ratio to spirotetramat for adult aphids and nymph, respectively, as compared with the susceptible strain (SS). In this study, a comparative proteomic analysis between SR and SS strains were conducted aims to better understand the resistant cotton aphids' spirotetramat tolerance mechanism. Approximately 493 protein spots were detected in the two-dimension polyacrylamide gel electrophoresis (2-DE). The intensities of 35 protein spots significantly changed, showing differences more than 2-fold in the SR strain compared with that in the SS strain. Of these spots, 20 protein spots were more abundant in the SR strain and 15 protein spots were more abundant in the SS strain. Twenty six differently expressed proteins were identified and categorized into several functional groups including carbohydrate and energy metabolism, antioxidant system, protein folding, amino acid metabolism, secondary metabolism and cytoskeleton protein, etc. Among these proteins, the acetyl-coA carboxylase (ACC), heat shock protein 70, ubiquitin-conjugating enzyme, fatty acid synthase, UDP-glucose 6-dehydrogenase, etc. are speculated confer the spirotetramat resistance in cotton aphids.
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Affiliation(s)
- Jinghui Xi
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Yiou Pan
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Zhenxin Wei
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Chen Yang
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Xiwu Gao
- Department of Entomology, China Agricultural University, Beijing 100193, China
| | - Tianfei Peng
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Rui Bi
- College of Plant Science, Jilin University, Changchun 130062, China; Department of Entomology, Jilin Agricultural University, Changchun 130118, China
| | - Yan Liu
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Xuecheng Xin
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Qingli Shang
- College of Plant Science, Jilin University, Changchun 130062, China.
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Leary DH, Hervey WJ, Deschamps JR, Kusterbeck AW, Vora GJ. Which metaproteome? The impact of protein extraction bias on metaproteomic analyses. Mol Cell Probes 2013; 27:193-9. [DOI: 10.1016/j.mcp.2013.06.003] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2013] [Revised: 06/12/2013] [Accepted: 06/21/2013] [Indexed: 11/28/2022]
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Zhang M, Shen S. Effective protein extraction protocol for proteomics studies of Jerusalem artichoke leaves. J Sep Sci 2013; 36:2203-9. [PMID: 23630184 DOI: 10.1002/jssc.201300199] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 04/16/2013] [Accepted: 04/16/2013] [Indexed: 11/11/2022]
Abstract
Protein extraction is a crucial step for proteomics studies. To establish an effective protein extraction protocol suitable for two-dimensional electrophoresis (2DE) analysis in Jerusalem artichoke (Helianthus tuberosus L.), three different protein extraction methods-trichloroacetic acid/acetone, Mg/NP-40, and phenol/ammonium acetate-were evaluated using Jerusalem artichoke leaves as source materials. Of the three methods, trichloroacetic acid/acetone yielded the best protein separation pattern and highest number of protein spots in 2DE analysis. Proteins highly abundant in leaves, such as Rubisco, are typically problematic during leaf 2DE analysis, however, and this disadvantage was evident using trichloroacetic acid/acetone. To reduce the influence of abundant proteins on the detection of low-abundance proteins, we optimized the trichloroacetic acid/acetone method by incorporating a PEG fractionation approach. After optimization, 363 additional (36.2%) protein spots were detected on the 2DE gel. Our results suggest that trichloroacetic acid/acetone method is a better protein extraction technique than Mg/NP-40 and phenol/ammonium acetate in Jerusalem artichoke leaf 2DE analysis, and that trichloroacetic acid/acetone method combined with PEG fractionation procedure is the most effective approach for leaf 2DE analysis of Jerusalem artichoke.
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Affiliation(s)
- Meide Zhang
- Institute of Chinese Herbal Medicine, Hubei Academy of Agricultural Sciences, Enshi, China.
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