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For: Bankhead P. Developing image analysis methods for digital pathology. J Pathol 2022;257:391-402. [PMID: 35481680 PMCID: PMC9324951 DOI: 10.1002/path.5921] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 04/22/2022] [Accepted: 04/25/2022] [Indexed: 12/04/2022]
Number Cited by Other Article(s)
1
Zheng J, Wang T, Wang H, Yan B, Lai J, Qiu K, Zhou X, Tan J, Wang S, Ji H, Feng M, Jiang W, Wang H, Yan J. Use of a Pathomics Nomogram to Predict Postoperative Liver Metastasis in Patients with Stage III Colorectal Cancer. Ann Surg Oncol 2024:10.1245/s10434-024-16519-8. [PMID: 39614006 DOI: 10.1245/s10434-024-16519-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 10/30/2024] [Indexed: 12/01/2024]
2
Yli-Hallila A, Bankhead P, Arends MJ, Lehenkari P, Palosaari S. QuPath Edu and OpenMicroanatomy: Open-source virtual microscopy tools for medical education. J Anat 2024. [PMID: 39555994 DOI: 10.1111/joa.14172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Revised: 10/22/2024] [Accepted: 10/23/2024] [Indexed: 11/19/2024]  Open
3
Köhne M, Diel E, Packeiser EM, Böttcher D, Tönissen A, Unruh C, Goericke-Pesch S, Ulrich R, Sieme H. Analysis of gene and protein expression in the endometrium for validation of an ex vivo model of the equine uterus using PCR, digital and visual histopathology. Theriogenology 2024;221:38-46. [PMID: 38537320 DOI: 10.1016/j.theriogenology.2024.03.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 03/21/2024] [Accepted: 03/23/2024] [Indexed: 04/09/2024]
4
Kashimura A, Nishikawa S, Ozawa Y, Hibino Y, Tateoka T, Mizukawa M, Nishina H, Sakairi T, Shiga T, Aihara N, Kamiie J. Combination of pathological, biochemical and behavioral evaluations for peripheral neurotoxicity assessment in isoniazid-treated rats. J Toxicol Pathol 2024;37:69-82. [PMID: 38584972 PMCID: PMC10995436 DOI: 10.1293/tox.2023-0094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 12/08/2023] [Indexed: 04/09/2024]  Open
5
Despotovic V, Kim SY, Hau AC, Kakoichankava A, Klamminger GG, Borgmann FBK, Frauenknecht KB, Mittelbronn M, Nazarov PV. Glioma subtype classification from histopathological images using in-domain and out-of-domain transfer learning: An experimental study. Heliyon 2024;10:e27515. [PMID: 38562501 PMCID: PMC10982966 DOI: 10.1016/j.heliyon.2024.e27515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 02/29/2024] [Accepted: 03/01/2024] [Indexed: 04/04/2024]  Open
6
Chauveau B, Merville P. Segment Anything by Meta as a foundation model for image segmentation: a new era for histopathological images. Pathology 2023;55:1017-1020. [PMID: 37813761 DOI: 10.1016/j.pathol.2023.09.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 08/16/2023] [Accepted: 09/17/2023] [Indexed: 10/11/2023]
7
Sun X, Li W, Fu B, Peng Y, He J, Wang L, Yang T, Meng X, Li J, Wang J, Huang P, Wang R. TGMIL: A hybrid multi-instance learning model based on the Transformer and the Graph Attention Network for whole-slide images classification of renal cell carcinoma. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023;242:107789. [PMID: 37722310 DOI: 10.1016/j.cmpb.2023.107789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 08/30/2023] [Accepted: 09/01/2023] [Indexed: 09/20/2023]
8
Aliar K, Waterhouse HR, Vyas F, Krebs N, Zhang B, Poulton E, Chan N, Gonzalez R, Jang GH, Bronsert P, Fischer SE, Gallinger S, Grünwald BT, Khokha R. Hourglass, a rapid analysis framework for heterogeneous bioimaging data, identifies sex disparity in IL-6/STAT3-associated immune phenotypes in pancreatic cancer. J Pathol 2023;261:413-426. [PMID: 37768107 DOI: 10.1002/path.6199] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 07/06/2023] [Accepted: 08/11/2023] [Indexed: 09/29/2023]
9
Khozeymeh F, Ariamanesh M, Roshan NM, Jafarian A, Farzanehfar M, Majd HM, Sedghian A, Dehghani M. Comparison of FNA-based conventional cytology specimens and digital image analysis in assessment of pancreatic lesions. Cytojournal 2023;20:39. [PMID: 37942305 PMCID: PMC10629281 DOI: 10.25259/cytojournal_61_2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 07/05/2023] [Indexed: 11/10/2023]  Open
10
Parra ER, Ilié M, Wistuba II, Hofman P. Quantitative multiplexed imaging technologies for single-cell analysis to assess predictive markers for immunotherapy in thoracic immuno-oncology: promises and challenges. Br J Cancer 2023;129:1417-1431. [PMID: 37391504 PMCID: PMC10628288 DOI: 10.1038/s41416-023-02318-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 05/05/2023] [Accepted: 06/12/2023] [Indexed: 07/02/2023]  Open
11
Zhao C, Germain RN. Multiplex imaging in immuno-oncology. J Immunother Cancer 2023;11:e006923. [PMID: 37899132 PMCID: PMC10619056 DOI: 10.1136/jitc-2023-006923] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/15/2023] [Indexed: 10/31/2023]  Open
12
Brunel B, Prada P, Slimano F, Boulagnon-Rombi C, Bouché O, Piot O. Deep learning for the prediction of the chemotherapy response of metastatic colorectal cancer: comparing and combining H&E staining histopathology and infrared spectral histopathology. Analyst 2023;148:3909-3917. [PMID: 37466305 DOI: 10.1039/d3an00627a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/20/2023]
13
Asif A, Rajpoot K, Graham S, Snead D, Minhas F, Rajpoot N. Unleashing the potential of AI for pathology: challenges and recommendations. J Pathol 2023;260:564-577. [PMID: 37550878 PMCID: PMC10952719 DOI: 10.1002/path.6168] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/21/2023] [Accepted: 06/22/2023] [Indexed: 08/09/2023]
14
TCNN: A Transformer Convolutional Neural Network for artifact classification in whole slide images. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
15
Chen D, Lai J, Cheng J, Fu M, Lin L, Chen F, Huang R, Chen J, Lu J, Chen Y, Huang G, Yan M, Ma X, Li G, Chen G, Yan J. Predicting peritoneal recurrence in gastric cancer with serosal invasion using a pathomics nomogram. iScience 2023;26:106246. [PMID: 36994190 PMCID: PMC10040964 DOI: 10.1016/j.isci.2023.106246] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 01/29/2023] [Accepted: 02/16/2023] [Indexed: 03/06/2023]  Open
16
Stergar J, Hren R, Milanič M. Design and Validation of a Custom-Made Hyperspectral Microscope Imaging System for Biomedical Applications. SENSORS (BASEL, SWITZERLAND) 2023;23:2374. [PMID: 36904578 PMCID: PMC10007032 DOI: 10.3390/s23052374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 02/10/2023] [Accepted: 02/19/2023] [Indexed: 06/18/2023]
17
Annotating for Artificial Intelligence Applications in Digital Pathology: A Practical Guide for Pathologists and Researchers. Mod Pathol 2023;36:100086. [PMID: 36788085 DOI: 10.1016/j.modpat.2022.100086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 11/24/2022] [Accepted: 12/14/2022] [Indexed: 01/13/2023]
18
McNamara MC, Hosios AM, Torrence ME, Zhao T, Fraser C, Wilkinson M, Kwiatkowski DJ, Henske EP, Wu CL, Sarosiek KA, Valvezan AJ, Manning BD. Reciprocal effects of mTOR inhibitors on pro-survival proteins dictate therapeutic responses in tuberous sclerosis complex. iScience 2022;25:105458. [PMID: 36388985 PMCID: PMC9663903 DOI: 10.1016/j.isci.2022.105458] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 09/30/2022] [Accepted: 10/23/2022] [Indexed: 11/13/2022]  Open
19
Evaluation of MetaSystems Automated Fluorescent Microscopy System for the Machine-Assisted Detection of Acid-Fast Bacilli in Clinical Samples. J Clin Microbiol 2022;60:e0113122. [PMID: 36121216 PMCID: PMC9580351 DOI: 10.1128/jcm.01131-22] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
20
The area of residual tumor predicts esophageal squamous cell carcinoma prognosis following neoadjuvant chemotherapy. J Cancer Res Clin Oncol 2022:10.1007/s00432-022-04366-7. [PMID: 36201027 DOI: 10.1007/s00432-022-04366-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Accepted: 09/16/2022] [Indexed: 10/10/2022]
21
Sauter D, Lodde G, Nensa F, Schadendorf D, Livingstone E, Kukuk M. Validating Automatic Concept-Based Explanations for AI-Based Digital Histopathology. SENSORS (BASEL, SWITZERLAND) 2022;22:s22145346. [PMID: 35891026 PMCID: PMC9319808 DOI: 10.3390/s22145346] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 07/01/2022] [Accepted: 07/15/2022] [Indexed: 05/06/2023]
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