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For: Biron DG, Brun C, Lefevre T, Lebarbenchon C, Loxdale HD, Chevenet F, Brizard JP, Thomas F. The pitfalls of proteomics experiments without the correct use of bioinformatics tools. Proteomics 2006;6:5577-96. [PMID: 16991202 DOI: 10.1002/pmic.200600223] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]

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Number Cited by Other Article(s)
1
Henke AN, Chilukuri S, Langan LM, Brooks BW. Reporting and reproducibility: Proteomics of fish models in environmental toxicology and ecotoxicology. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;912:168455. [PMID: 37979845 DOI: 10.1016/j.scitotenv.2023.168455] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 11/06/2023] [Accepted: 11/07/2023] [Indexed: 11/20/2023]
2
Stephani L, Rahayu P, Retnoningrum D, Suhartono MT, Rachmawati H, Tjandrawinata RR. Purification and proteomic analysis of potent fibrinolytic enzymes extracted from Lumbricus rubellus. Proteome Sci 2023;21:8. [PMID: 37158880 PMCID: PMC10165752 DOI: 10.1186/s12953-023-00206-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 04/16/2023] [Indexed: 05/10/2023]  Open
3
Li Z, Shen H, Liu Y, Zhou X, Yan M, He H, Zhao T, Zhang H, Li P. Subproteomic profiling from renal cortices in OLETF rats reveals mutations of multiple novel genes in diabetic nephropathy. Genes Genomics 2021;44:109-122. [PMID: 34643893 DOI: 10.1007/s13258-021-01174-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Accepted: 09/29/2021] [Indexed: 10/20/2022]
4
Chase Huizar C, Raphael I, Forsthuber TG. Genomic, proteomic, and systems biology approaches in biomarker discovery for multiple sclerosis. Cell Immunol 2020;358:104219. [PMID: 33039896 PMCID: PMC7927152 DOI: 10.1016/j.cellimm.2020.104219] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 09/13/2020] [Accepted: 09/16/2020] [Indexed: 12/12/2022]
5
Immunoreactive Proteins in the Esophageal Gland Cells of Anisakis Simplex Sensu Stricto Detected by MALDI-TOF/TOF Analysis. Genes (Basel) 2020;11:genes11060683. [PMID: 32580523 PMCID: PMC7349779 DOI: 10.3390/genes11060683] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 06/18/2020] [Accepted: 06/19/2020] [Indexed: 01/15/2023]  Open
6
Li Z, Liu Y, Zhang H, Pu Z, Wu X, Li P. Effect of fosinopril on the renal cortex protein expression profile of Otsuka Long-Evans Tokushima Fatty rats. Exp Ther Med 2019;19:172-182. [PMID: 31853288 PMCID: PMC6909786 DOI: 10.3892/etm.2019.8188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 08/23/2019] [Indexed: 12/21/2022]  Open
7
Wang J, Jia X, Meng X, Li Y, Wu W, Zhang X, Xu H, Cui J. Annexin A3 may play an important role in ochratoxin-induced malignant transformation of human gastric epithelium cells. Toxicol Lett 2019;313:150-158. [PMID: 31276768 DOI: 10.1016/j.toxlet.2019.07.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Revised: 06/24/2019] [Accepted: 07/01/2019] [Indexed: 10/26/2022]
8
Acetylated α-Tubulin Regulated by N-Acetyl-Seryl-Aspartyl-Lysyl-Proline(Ac-SDKP) Exerts the Anti-fibrotic Effect in Rat Lung Fibrosis Induced by Silica. Sci Rep 2016;6:32257. [PMID: 27577858 PMCID: PMC5006047 DOI: 10.1038/srep32257] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2016] [Accepted: 08/04/2016] [Indexed: 12/17/2022]  Open
9
Du L, Song J, Forney C, Palmer LC, Fillmore S, Zhang Z. Proteome changes in banana fruit peel tissue in response to ethylene and high-temperature treatments. HORTICULTURE RESEARCH 2016;3:16012. [PMID: 27162640 PMCID: PMC4846988 DOI: 10.1038/hortres.2016.12] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Revised: 02/26/2016] [Accepted: 02/26/2016] [Indexed: 05/04/2023]
10
Mischak H, Critselis E, Hanash S, Gallagher WM, Vlahou A, Ioannidis JPA. Epidemiologic design and analysis for proteomic studies: a primer on -omic technologies. Am J Epidemiol 2015;181:635-47. [PMID: 25792606 DOI: 10.1093/aje/kwu462] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2014] [Accepted: 12/15/2014] [Indexed: 12/13/2022]  Open
11
Biron DG, Bonhomme L, Coulon M, Øverli Ø. Microbiomes, plausible players or not in alteration of host behavior. Front Microbiol 2015;5:775. [PMID: 25628614 PMCID: PMC4290534 DOI: 10.3389/fmicb.2014.00775] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Accepted: 12/17/2014] [Indexed: 12/26/2022]  Open
12
Analytical Characterization and Comparison of Tristyrylphenol Ethoxylates Used in Agrochemical Formulations. J SURFACTANTS DETERG 2014. [DOI: 10.1007/s11743-014-1654-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
13
Arcos SC, Ciordia S, Roberston L, Zapico I, Jiménez-Ruiz Y, Gonzalez-Muñoz M, Moneo I, Carballeda-Sangiao N, Rodriguez-Mahillo A, Albar JP, Navas A. Proteomic profiling and characterization of differential allergens in the nematodes Anisakis simplex sensu stricto and A. pegreffii. Proteomics 2014;14:1547-68. [PMID: 24723494 DOI: 10.1002/pmic.201300529] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Revised: 03/07/2014] [Accepted: 03/27/2014] [Indexed: 12/30/2022]
14
de Roos B. Proteomic analysis of human plasma and blood cells in nutritional studies: development of biomarkers to aid disease prevention. Expert Rev Proteomics 2014;5:819-26. [DOI: 10.1586/14789450.5.6.819] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
15
A field guide to genomics research. PLoS Biol 2014;12:e1001744. [PMID: 24409093 PMCID: PMC3883637 DOI: 10.1371/journal.pbio.1001744] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
16
Pinheiro C, Sergeant K, Machado CM, Renaut J, Ricardo CP. Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome. J Proteome Res 2013;12:3152-65. [DOI: 10.1021/pr400012t] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
17
Biron DG, Loxdale HD. Host–parasite molecular cross-talk during the manipulative process of a host by its parasite. J Exp Biol 2013;216:148-60. [DOI: 10.1242/jeb.073825] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
18
Teles LMB, Aquino EN, Neves ACD, Garcia CHS, Roepstorff P, Fontes B, Castro MS, Fontes W. Comparison of the neutrophil proteome in trauma patients and normal controls. Protein Pept Lett 2012;19:663-72. [PMID: 22519539 PMCID: PMC3382372 DOI: 10.2174/092986612800493977] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2011] [Revised: 12/12/2011] [Accepted: 12/14/2011] [Indexed: 01/11/2023]
Background: Neutrophils have an impressive array of microbicidal weapons, and in the presence of a pathogen, progress from a quiescent state in the bloodstream to a completely activated state. Failure to regulate this activation, for example, when the blood is flooded with cytokines after severe trauma, causes inappropriate neutrophil activation that paradoxically, is associated with tissue and organ damage. Acidic proteomic maps of quiescent human neutrophils were analyzed and compared to those of activated neutrophils from severe trauma patients. The analysis revealed 114 spots whose measured volumes differed between activated and quiescent neutrophils, with 27 upregulated and 87 downregulated in trauma conditions. Among the identified proteins, grancalcin, S100-A9 and CACNB2 reinforce observed correlations between motility and ion flux, ANXA3, SNAP, FGD1 and Zfyve19 are involved in vesicular transport and exocytosis, and GSTP1, HSPA1 HSPA1L, MAOB, UCH-L5, and PPA1 presented evidence that activated neutrophils may have diminished protection against oxidative damage and are prone to apoptosis. These are discussed, along with proteins involved in cytoskeleton reorganization, reactive oxygen species production, and ion flux. Proteins such as Zfyve19, MAOB and albumin- like protein were described for the first time in the neutrophil. In this work we achieved the identification of several proteins potentially involved in inflammatory signaling after trauma, as well as proteins described for the first time in neutrophils.
  • Liz M B Teles
    • Laboratory of Biochemistry and Protein Chemistry, Cell Biology Department, University of Brasília, Brasilia, DF, Brazil. CEP 70910-900
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19
Lista S, Faltraco F, Hampel H. Biological and methodical challenges of blood-based proteomics in the field of neurological research. Prog Neurobiol 2012;101-102:18-34. [PMID: 22743551 DOI: 10.1016/j.pneurobio.2012.06.006] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2011] [Revised: 03/28/2012] [Accepted: 06/18/2012] [Indexed: 12/17/2022]
20
Wu SH, Black MA, North RA, Rodrigo AG. A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels. BMC Bioinformatics 2012;13:137. [PMID: 22712439 PMCID: PMC3505467 DOI: 10.1186/1471-2105-13-137] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Accepted: 05/30/2012] [Indexed: 11/23/2022]  Open
21
Bradley BP. Finding biomarkers is getting easier. ECOTOXICOLOGY (LONDON, ENGLAND) 2012;21:631-636. [PMID: 22410950 DOI: 10.1007/s10646-011-0848-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 12/17/2011] [Indexed: 05/31/2023]
22
A systems biology approach to nutritional immunology - focus on innate immunity. Mol Aspects Med 2011;33:14-25. [PMID: 22061966 DOI: 10.1016/j.mam.2011.10.013] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2011] [Revised: 10/24/2011] [Accepted: 10/24/2011] [Indexed: 12/22/2022]
23
Hadrévi J, Hellström F, Kieselbach T, Malm C, Pedrosa-Domellöf F. Protein differences between human trapezius and vastus lateralis muscles determined with a proteomic approach. BMC Musculoskelet Disord 2011;12:181. [PMID: 21831281 PMCID: PMC3173403 DOI: 10.1186/1471-2474-12-181] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/24/2011] [Accepted: 08/10/2011] [Indexed: 01/24/2023]  Open
24
Burg D, Ng C, Ting L, Cavicchioli R. Proteomics of extremophiles. Environ Microbiol 2011;13:1934-55. [DOI: 10.1111/j.1462-2920.2011.02484.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
25
Rhea JM, Diwan CA, Molinaro RJ. Mass spectrometry-coupled techniques for viral-related disease biomarker identification. Biomark Med 2011;4:859-70. [PMID: 21133707 DOI: 10.2217/bmm.10.110] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
26
Millioni R, Puricelli L, Sbrignadello S, Iori E, Murphy E, Tessari P. Operator- and software-related post-experimental variability and source of error in 2-DE analysis. Amino Acids 2011;42:1583-90. [PMID: 21394601 DOI: 10.1007/s00726-011-0873-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2010] [Accepted: 02/26/2011] [Indexed: 01/09/2023]
27
Plasma proteomic profiles of bovine growth hormone transgenic mice as they age. Transgenic Res 2011;20:1305-20. [PMID: 21365322 DOI: 10.1007/s11248-011-9499-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2010] [Accepted: 02/20/2011] [Indexed: 12/17/2022]
28
Faergestad EM, Rye MB, Nhek S, Hollung K, Grove H. The use of chemometrics to analyse protein patterns from gel electrophoresis. ACTA CHROMATOGR 2011. [DOI: 10.1556/achrom.23.2011.1.1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
29
Mari A, Ciardiello MA, Tamburrini M, Rasi C, Palazzo P. Proteomic analysis in the identification of allergenic molecules. Expert Rev Proteomics 2011;7:723-34. [PMID: 20973644 DOI: 10.1586/epr.10.44] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
30
Wittwer J, Rubio-Aliaga I, Hoeft B, Bendik I, Weber P, Daniel H. Nutrigenomics in human intervention studies: Current status, lessons learned and future perspectives. Mol Nutr Food Res 2011;55:341-58. [DOI: 10.1002/mnfr.201000512] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2010] [Revised: 12/01/2010] [Accepted: 12/02/2010] [Indexed: 11/08/2022]
31
Li Z, Zhang H, Dong X, Burczynski FJ, Choy P, Yang F, Liu H, Li P, Gong Y. Proteomic profile of primary isolated rat mesangial cells in high-glucose culture condition and decreased expression of PSMA6 in renal cortex of diabetic rats. Biochem Cell Biol 2010;88:635-48. [PMID: 20651835 DOI: 10.1139/o09-185] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
32
Dowsey AW, English JA, Lisacek F, Morris JS, Yang GZ, Dunn MJ. Image analysis tools and emerging algorithms for expression proteomics. Proteomics 2010;10:4226-57. [PMID: 21046614 PMCID: PMC3257807 DOI: 10.1002/pmic.200900635] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2009] [Accepted: 08/28/2010] [Indexed: 11/11/2022]
33
Phylogenetic character mapping of proteomic diversity shows high correlation with subspecific phylogenetic diversity in Trypanosoma cruzi. Proc Natl Acad Sci U S A 2010;107:20411-6. [PMID: 21059959 DOI: 10.1073/pnas.1015496107] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
34
Gandra PG, Valente RH, Perales J, Pacheco AG, Macedo DV. Proteomic analysis of rat skeletal muscle submitted to one bout of incremental exercise. Scand J Med Sci Sports 2010;22:207-16. [DOI: 10.1111/j.1600-0838.2010.01235.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
35
Tessier D, Yclon P, Jacquemin I, Larré C, Rogniaux H. OVNIp: an open source application facilitating the interpretation, the validation and the edition of proteomics data generated by MS analyses and de novo sequencing. Proteomics 2010;10:1794-801. [PMID: 20198638 DOI: 10.1002/pmic.200800783] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
36
Pedreschi R, Hertog M, Lilley KS, Nicolaï B. Proteomics for the Food Industry: Opportunities and Challenges. Crit Rev Food Sci Nutr 2010;50:680-92. [DOI: 10.1080/10408390903044214] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
37
Proteomics of plant pathogenic fungi. J Biomed Biotechnol 2010;2010:932527. [PMID: 20589070 PMCID: PMC2878683 DOI: 10.1155/2010/932527] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2009] [Revised: 02/03/2010] [Accepted: 03/01/2010] [Indexed: 12/15/2022]  Open
38
Silberring J, Ciborowski P. Biomarker discovery and clinical proteomics. Trends Analyt Chem 2010;29:128. [PMID: 20174458 DOI: 10.1016/j.trac.2009.11.007] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
39
Albrecht D, Kniemeyer O, Brakhage AA, Guthke R. Missing values in gel-based proteomics. Proteomics 2010;10:1202-11. [PMID: 20077407 DOI: 10.1002/pmic.200800576] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
40
Masova A, Sanda M, Jiracek J, Selicharova I. Changes in the proteomes of the hemocytes and fat bodies of the flesh fly Sarcophaga bullata larvae after infection by Escherichia coli. Proteome Sci 2010;8:1. [PMID: 20142993 PMCID: PMC2817646 DOI: 10.1186/1477-5956-8-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2009] [Accepted: 01/13/2010] [Indexed: 01/21/2023]  Open
41
Jacob F, Goldstein DR, Fink D, Heinzelmann-Schwarz V. Proteogenomic studies in epithelial ovarian cancer: established knowledge and future needs. Biomark Med 2009;3:743-56. [DOI: 10.2217/bmm.09.48] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
42
Wu SH, Black MA, North RA, Atkinson KR, Rodrigo AG. A statistical model to identify differentially expressed proteins in 2D PAGE gels. PLoS Comput Biol 2009;5:e1000509. [PMID: 19763172 PMCID: PMC2734266 DOI: 10.1371/journal.pcbi.1000509] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2009] [Accepted: 08/19/2009] [Indexed: 11/18/2022]  Open
43
Moxon JV, Padula MP, Herbert BR, Golledge J. Challenges, current status and future perspectives of proteomics in improving understanding, diagnosis and treatment of vascular disease. Eur J Vasc Endovasc Surg 2009;38:346-55. [PMID: 19541510 PMCID: PMC2727576 DOI: 10.1016/j.ejvs.2009.05.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2009] [Accepted: 05/11/2009] [Indexed: 01/21/2023]
44
Bradley BP, Kalampanayil B, O'Neill MC. Protein expression profiling. METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 2009;519:455-68. [PMID: 19381602 DOI: 10.1007/978-1-59745-281-6_30] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
45
Fröhlich T, Arnold GJ, Fritsch R, Mayr T, Laforsch C. LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia. BMC Genomics 2009;10:171. [PMID: 19383153 PMCID: PMC2674882 DOI: 10.1186/1471-2164-10-171] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2008] [Accepted: 04/21/2009] [Indexed: 12/23/2022]  Open
46
Holzmuller P, Grébaut P, Brizard JP, Berthier D, Chantal I, Bossard G, Bucheton B, Vezilier F, Chuchana P, Bras-Gonçalves R, Lemesre JL, Vincendeau P, Cuny G, Frutos R, Biron DG. "Pathogeno-proteomics". Ann N Y Acad Sci 2009;1149:66-70. [PMID: 19120176 DOI: 10.1196/annals.1428.061] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Pérès S, Molina L, Salvetat N, Granier C, Molina F. A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics. BMC Bioinformatics 2008;9:460. [PMID: 18957120 PMCID: PMC2628390 DOI: 10.1186/1471-2105-9-460] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2008] [Accepted: 10/28/2008] [Indexed: 11/10/2022]  Open
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Damodaran S, Wood TD, Nagarajan P, Rabin RA. Evaluating peptide mass fingerprinting-based protein identification. GENOMICS PROTEOMICS & BIOINFORMATICS 2008;5:152-7. [PMID: 18267296 PMCID: PMC5054195 DOI: 10.1016/s1672-0229(08)60002-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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de Roos B, Geelen A, Ross K, Rucklidge G, Reid M, Duncan G, Caslake M, Horgan G, Brouwer IA. Identification of potential serum biomarkers of inflammation and lipid modulation that are altered by fish oil supplementation in healthy volunteers. Proteomics 2008;8:1965-74. [DOI: 10.1002/pmic.200700457] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Vydra J, Selicharová I, Smutná K, Šanda M, Matoušková E, Buršíková E, Prchalová M, Velenská Z, Coufal D, Jiráček J. Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitro cultured epithelial cells derived from the cancer tissues. BMC Cancer 2008;8:107. [PMID: 18416831 PMCID: PMC2377273 DOI: 10.1186/1471-2407-8-107] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2008] [Accepted: 04/16/2008] [Indexed: 12/23/2022]  Open
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