1
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Yoshimura A, Zhdankin VV. Recent Progress in Synthetic Applications of Hypervalent Iodine(III) Reagents. Chem Rev 2024; 124:11108-11186. [PMID: 39269928 PMCID: PMC11468727 DOI: 10.1021/acs.chemrev.4c00303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 08/18/2024] [Accepted: 08/29/2024] [Indexed: 09/15/2024]
Abstract
Hypervalent iodine(III) compounds have found wide application in modern organic chemistry as environmentally friendly reagents and catalysts. Hypervalent iodine reagents are commonly used in synthetically important halogenations, oxidations, aminations, heterocyclizations, and various oxidative functionalizations of organic substrates. Iodonium salts are important arylating reagents, while iodonium ylides and imides are excellent carbene and nitrene precursors. Various derivatives of benziodoxoles, such as azidobenziodoxoles, trifluoromethylbenziodoxoles, alkynylbenziodoxoles, and alkenylbenziodoxoles have found wide application as group transfer reagents in the presence of transition metal catalysts, under metal-free conditions, or using photocatalysts under photoirradiation conditions. Development of hypervalent iodine catalytic systems and discovery of highly enantioselective reactions using chiral hypervalent iodine compounds represent a particularly important recent achievement in the field of hypervalent iodine chemistry. Chemical transformations promoted by hypervalent iodine in many cases are unique and cannot be performed by using any other common, non-iodine-based reagent. This review covers literature published mainly in the last 7-8 years, between 2016 and 2024.
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Affiliation(s)
- Akira Yoshimura
- Faculty
of Pharmaceutical Sciences, Aomori University, 2-3-1 Kobata, Aomori 030-0943, Japan
| | - Viktor V. Zhdankin
- Department
of Chemistry and Biochemistry, University
of Minnesota Duluth, Duluth, Minnesota 55812, United States
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2
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Shao Y, Ren Z, Han Z, Chen L, Li Y, Xue XS. Predicting bond dissociation energies of cyclic hypervalent halogen reagents using DFT calculations and graph attention network model. Beilstein J Org Chem 2024; 20:1444-1452. [PMID: 38952960 PMCID: PMC11216094 DOI: 10.3762/bjoc.20.127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 06/17/2024] [Indexed: 07/03/2024] Open
Abstract
Although hypervalent iodine(III) reagents have become staples in organic chemistry, the exploration of their isoelectronic counterparts, namely hypervalent bromine(III) and chlorine(III) reagents, has been relatively limited, partly due to challenges in synthesizing and stabilizing these compounds. In this study, we conduct a thorough examination of both homolytic and heterolytic bond dissociation energies (BDEs) critical for assessing the chemical stability and functional group transfer capability of cyclic hypervalent halogen compounds using density functional theory (DFT) analysis. A moderate linear correlation was observed between the homolytic BDEs across different halogen centers, while a strong linear correlation was noted among the heterolytic BDEs across these centers. Furthermore, we developed a predictive model for both homolytic and heterolytic BDEs of cyclic hypervalent halogen compounds using machine learning algorithms. The results of this study could aid in estimating the chemical stability and functional group transfer capabilities of hypervalent bromine(III) and chlorine(III) reagents, thereby facilitating their development.
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Affiliation(s)
- Yingbo Shao
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Zhiyuan Ren
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Zhihui Han
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Li Chen
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Yao Li
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Shanghai 200032, P. R. China,
| | - Xiao-Song Xue
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Shanghai 200032, P. R. China,
- School of Chemistry and Material Sciences, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, P. R. China
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3
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Kumar R, Dohi T, Zhdankin VV. Organohypervalent heterocycles. Chem Soc Rev 2024; 53:4786-4827. [PMID: 38545658 DOI: 10.1039/d2cs01055k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
This review summarizes the structural and synthetic aspects of heterocyclic molecules incorporating an atom of a hypervalent main-group element. The term "hypervalent" has been suggested for derivatives of main-group elements with more than eight valence electrons, and the concept of hypervalency is commonly used despite some criticism from theoretical chemists. The significantly higher thermal stability of hypervalent heterocycles compared to their acyclic analogs adds special features to their chemistry, particularly for bromine and iodine. Heterocyclic compounds of elements with double bonds are not categorized as hypervalent molecules owing to the zwitterionic nature of these bonds, resulting in the conventional 8-electron species. This review is focused on hypervalent heterocyclic derivatives of nonmetal main-group elements, such as boron, silicon, nitrogen, carbon, phosphorus, sulfur, selenium, bromine, chlorine, iodine(III) and iodine(V).
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Affiliation(s)
- Ravi Kumar
- Department of Chemistry, J C Bose University of Science and Technology, YMCA, NH-2, Sector-6, Mathura Road, Faridabad, 121006, Haryana, India.
| | - Toshifumi Dohi
- Graduate School of Pharmaceutical Sciences, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga, 525-8577, Japan.
| | - Viktor V Zhdankin
- Department of Chemistry and Biochemistry, 1038 University Drive, 126 HCAMS University of Minnesota Duluth, Duluth, Minnesota 55812, USA.
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4
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Lohithakshamenon R, Prasanthkumar KP, Femina C, Sajith PK. Bond Strength and Interaction Energies in Togni Reagents: Insights from Molecular Electrostatic Potential-Based Parameters. J Phys Chem A 2024; 128:727-737. [PMID: 38253016 DOI: 10.1021/acs.jpca.3c06378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
Togni reagents and their analogs, classified as hypervalent iodine(III) complexes, serve as potent trifluoromethylation agents. The interplay of cis and trans factors plays a pivotal role in shaping their performance, affecting aspects such as bond strength, interaction energies, stability, and subsequent nucleophilic reactions. In this context, we propose the utilization of the molecular electrostatic potential (MESP) at the carbon atom (VC) of the I-CF3 moiety as a sensitive parameter to quantify the cis and trans influences in Togni-type reagents. Our study has shown that VC serves as a convenient probe for determining the heterolytic bond dissociation energy (BDE) and, consequently, assessing the reactivity of these reagents. Moreover, these parameters have been successfully applied to evaluate the strength of the σ-hole interactions with nucleophiles (Cl- and NMe3). Additionally, we provide insights into interactions of Togni reagents with Brønsted acids such as HCl and HSO3F, elucidating them in terms of MESP topological parameters. These findings yield valuable information about the electronic properties of hypervalent iodine reagents, particularly Togni-type reagents, offering the potential for optimizing structurally modified reagents with enhanced activity and stability.
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Affiliation(s)
| | - Kavanal P Prasanthkumar
- Post Graduate and Research Department of Chemistry, Maharaja's College, Ernakulam 682011, India
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5
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Sakakibara Y, Itami K, Murakami K. Switchable Decarboxylation by Energy- or Electron-Transfer Photocatalysis. J Am Chem Soc 2024; 146:1554-1562. [PMID: 38103176 DOI: 10.1021/jacs.3c11588] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2023]
Abstract
Kolbe dimerization and Hofer-Moest reactions are well-investigated carboxylic acid transformations, wherein new carbon-carbon and carbon-heteroatom bonds are constructed via electrochemical decarboxylation. These transformations can be switched by choosing an electrode that allows control of the reactive intermediate, such as carbon radical or carbocation. However, the requirement of a high current density diminishes the functional group compatibility with these electrochemical reactions. Here, we demonstrate the photocatalytic decarboxylative transformation of activated carboxylic acids in a switchable and functional group-compatible manner. We discovered that switching between Kolbe-type or Hofer-Moest-type reactions can be accomplished with suitable photocatalysts by controlling the reaction pathways: energy transfer (EnT) and single-electron transfer (SET). The EnT pathway promoted by an organo-photocatalyst yielded 1,2-diarylethane from arylacetic acids, whereas the ruthenium photoredox catalyst allows the construction of an ester scaffold with two arylmethyl moieties via the SET pathway. The resulting radical intermediates were coupled to olefins to realize multicomponent reactions. Consequently, four different products were selectively obtained from a simple carboxylic acid. This discovery offers new opportunities for selectively synthesizing multiple products via switchable reactions using identical substrates with minimal cost and effort.
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Affiliation(s)
- Yota Sakakibara
- Graduate School of Science, Nagoya University, Chikusa 464-8602, Nagoya, Japan
- Department of Chemistry, School of Science, Kwansei Gakuin University, Sanda 669-1330, Hyogo, Japan
- Japanese Science and Technology Agency (JST)-PRESTO, Chiyoda 102-0076, Tokyo, Japan
| | - Kenichiro Itami
- Graduate School of Science, Nagoya University, Chikusa 464-8602, Nagoya, Japan
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa 464-8602, Nagoya, Japan
| | - Kei Murakami
- Department of Chemistry, School of Science, Kwansei Gakuin University, Sanda 669-1330, Hyogo, Japan
- Japanese Science and Technology Agency (JST)-PRESTO, Chiyoda 102-0076, Tokyo, Japan
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6
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Merecz-Sadowska A, Sitarek P, Kowalczyk T, Palusiak M, Hoelm M, Zajdel K, Zajdel R. In Vitro Evaluation and In Silico Calculations of the Antioxidant and Anti-Inflammatory Properties of Secondary Metabolites from Leonurus sibiricus L. Root Extracts. Molecules 2023; 28:6550. [PMID: 37764326 PMCID: PMC10537019 DOI: 10.3390/molecules28186550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 09/07/2023] [Accepted: 09/08/2023] [Indexed: 09/29/2023] Open
Abstract
Leonurus sibiricus L. has great ethnobotanical and ethnomedicinal significance. This study aimed to assess the antioxidant and anti-inflammatory properties of Leonurus sibiricus L. transgenic roots extracts transformed by Rhizobium rhizogenes, with and without the AtPAP1 transcriptional factor. The study determined the total phenolic and flavonoid contents, as well as in vitro antioxidant assays, including hydrogen peroxide and nitric oxide scavenging activity. In addition, in silico computational studies and molecular docking were conducted to evaluate the antioxidant and anti-inflammatory potential of the identified compounds. The ligands were docked to NADPH oxidase, cyclooxygenase 2,5-lipoxygenase, inducible nitric synthase and xanthine oxidase: enzymes involved in the inflammatory process. The total phenolic and flavonoid contents ranged from 85.3 ± 0.35 to 57.4 ± 0.15 mg/g GAE/g and 25.6 ± 0.42 to 18.2 ± 0.44 mg/g QUE/g in hairy root extracts with and without AtPAP1, respectively. H2O2 scavenging activity (IC50) was found to be 29.3 µg/mL (with AtPAP1) and 37.5 µg/mL (without AtPAP1 transcriptional factor), and NO scavenging activity (IC50) was 48.0 µg/mL (with AtPAP1) and 68.8 µg/mL (without AtPAP1 transcriptional factor). Leonurus sibiricus L. transformed root extracts, both with and without AtPAP1, are a source of phytochemicals belonging to different classes of molecules, such as flavonoids (catechin and rutin), phenolic compounds (caffeic acid, coumaric acid, chlorogenic acid, ferulic acid) and phenylpropanoid (verbascoside). Among the radicals formed after H removal from the different -OH positions, the lowest bond dissociation enthalpy was observed for rutin (4'-OH). Rutin was found to bind with cyclooxygenase 2, inducible nitric synthases and xanthine oxidase, whereas chlorogenic acid demonstrated optimal binding with 5-lipoxygenase. Therefore, it appears that the Leonurus sibiricus L. transformed root extract, both with and without the AtPAP1 transcriptional factor, may serve as a potential source of active components with antioxidant and anti-inflammatory potential; however, the extract containing AtPAP1 demonstrates superior activities. These properties could be beneficial for human health.
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Affiliation(s)
- Anna Merecz-Sadowska
- Department of Economic and Medical Informatics, University of Lodz, 90-214 Lodz, Poland;
| | - Przemysław Sitarek
- Department of Medical Biology, Medical University of Lodz, 90-151 Lodz, Poland;
| | - Tomasz Kowalczyk
- Department of Molecular Biotechnology and Genetics, Faculty of Biology and Environmental Protection, University of Lodz, 90-237 Lodz, Poland;
| | - Marcin Palusiak
- Theoretical and Structural Group, Department of Physical Chemistry, Faculty of Chemistry, University of Lodz, 90-236 Lodz, Poland; (M.P.); (M.H.)
| | - Marta Hoelm
- Theoretical and Structural Group, Department of Physical Chemistry, Faculty of Chemistry, University of Lodz, 90-236 Lodz, Poland; (M.P.); (M.H.)
| | - Karolina Zajdel
- Department of Medical Informatics and Statistics, Medical University of Lodz, 90-645 Lodz, Poland;
| | - Radosław Zajdel
- Department of Economic and Medical Informatics, University of Lodz, 90-214 Lodz, Poland;
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7
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Mironova IA, Kirsch SF, Zhdankin V, Yoshimura A, Yusubov MS. Hypervalent Iodine‐Mediated Azidation Reactions. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Irina A. Mironova
- Tomsk Polytechnic University: Nacional'nyj issledovatel'skij Tomskij politehniceskij universitet Chemistry RUSSIAN FEDERATION
| | - Stefan F. Kirsch
- Bergische Universität Wuppertal: Bergische Universitat Wuppertal Fakultät für Mathematik und Naturwissenschaften GERMANY
| | - Viktor Zhdankin
- University of Minnesota Duluth Chemistry 1039 University Dr 55812 Duluth UNITED STATES
| | - Akira Yoshimura
- Aomori University: Aomori Daigaku Department of Pharmacy JAPAN
| | - Mekhman S. Yusubov
- Tomsk Polytechnic University: Nacional'nyj issledovatel'skij Tomskij politehniceskij universitet Chemistry RUSSIAN FEDERATION
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8
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Late‐Stage Dehydroxyazidation of Alcohols Promoted by Trifunctional Hypervalent Azido‐Iodine(III) Reagents. Chemistry 2022; 28:e202200272. [DOI: 10.1002/chem.202200272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Indexed: 11/10/2022]
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9
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Nakajima M, Nagasawa S, Matsumoto K, Matsuda Y, Nemoto T. Synthesis of Visible-Light-Activated Hypervalent Iodine and Photo-oxidation under Visible Light Irradiation via a Direct S 0→T n Transition. Chem Pharm Bull (Tokyo) 2022; 70:235-239. [PMID: 35228388 DOI: 10.1248/cpb.c21-00899] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Heavy atom-containing molecules cause a photoreaction by a direct S0 → Tn transition. Therefore, even in a hypervalent iodine compound with a benzene ring as the main skeleton, the photoreaction proceeds under 365-400 nm wavelength light, where UV-visible spectra are not observed by usual measurement method. Some studies, however, report hypervalent iodine compounds that strongly absorb visible light. Herein, we report the synthesis of two visible light-absorbing hypervalent iodines and their photooxidation properties under visible light irradiation. We also demonstrated that the S0 → Tn transition causes the photoreaction to proceed under wavelengths in the blue and green light region.
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Affiliation(s)
- Masaya Nakajima
- Graduate School of Pharmaceutical Sciences, Chiba University
| | - Sho Nagasawa
- Graduate School of Pharmaceutical Sciences, Chiba University
| | - Koki Matsumoto
- Graduate School of Pharmaceutical Sciences, Chiba University
| | - Yu Matsuda
- Graduate School of Pharmaceutical Sciences, Chiba University
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10
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Ren J, Du FH, Jia MC, Hu ZN, Chen Z, Zhang C. Ring Expansion Fluorination of Unactivated Cyclopropanes Mediated by a New Monofluoroiodane(III) Reagent. Angew Chem Int Ed Engl 2021; 60:24171-24178. [PMID: 34523779 DOI: 10.1002/anie.202108589] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 09/03/2021] [Indexed: 11/08/2022]
Abstract
Herein, we report a new strategy for carbon-carbon bond scission and intramolecular ring expansion fluorination of unactivated cyclopropanes, which was accomplished with a new hypervalent fluoroiodane(III) reagent 1. This novel method delivers medicinally relevant 4-fully substituted fluoropiperidines in moderate to high yields with excellent regio- and diastereoselectivity. Reagent 1, which has an N-acetylbenziodazole framework, was readily synthesized via three steps in 76 % overall yield and was characterized by NMR spectroscopy and X-ray crystallography. Owing to the presence of a secondary I⋅⋅⋅O bonding interaction between the λ3 -iodane atom and the carbonyl oxygen of the acetyl group of the N-acetylbenziodazole framework, 1 has excellent stability and can be stored at ambient temperature for 6 months without any detectable decomposition. Density functional theory calculations and experimental studies showed that the reaction proceeds via a carbocation intermediate that readily combines with a fluoride ion to generate the product.
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Affiliation(s)
- Jing Ren
- State Key Laboratory of Elemento-Organic Chemistry, The Research Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, China
| | - Feng-Huan Du
- State Key Laboratory of Elemento-Organic Chemistry, The Research Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, China
| | - Meng-Cheng Jia
- State Key Laboratory of Elemento-Organic Chemistry, The Research Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, China
| | - Ze-Nan Hu
- State Key Laboratory of Elemento-Organic Chemistry, The Research Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, China
| | - Ze Chen
- State Key Laboratory of Elemento-Organic Chemistry, The Research Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, China
| | - Chi Zhang
- State Key Laboratory of Elemento-Organic Chemistry, The Research Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, China
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11
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Ren J, Du F, Jia M, Hu Z, Chen Z, Zhang C. Ring Expansion Fluorination of Unactivated Cyclopropanes Mediated by a New Monofluoroiodane(III) Reagent. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202108589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jing Ren
- State Key Laboratory of Elemento-Organic Chemistry The Research Institute of Elemento-Organic Chemistry College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 China
| | - Feng‐Huan Du
- State Key Laboratory of Elemento-Organic Chemistry The Research Institute of Elemento-Organic Chemistry College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 China
| | - Meng‐Cheng Jia
- State Key Laboratory of Elemento-Organic Chemistry The Research Institute of Elemento-Organic Chemistry College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 China
| | - Ze‐Nan Hu
- State Key Laboratory of Elemento-Organic Chemistry The Research Institute of Elemento-Organic Chemistry College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 China
| | - Ze Chen
- State Key Laboratory of Elemento-Organic Chemistry The Research Institute of Elemento-Organic Chemistry College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 China
| | - Chi Zhang
- State Key Laboratory of Elemento-Organic Chemistry The Research Institute of Elemento-Organic Chemistry College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 China
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12
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Nakajima M, Nemoto T. Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES. Sci Rep 2021; 11:20207. [PMID: 34642360 PMCID: PMC8511102 DOI: 10.1038/s41598-021-99369-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 09/22/2021] [Indexed: 12/17/2022] Open
Abstract
Machine learning to create models on the basis of big data enables predictions from new input data. Many tasks formerly performed by humans can now be achieved by machine learning algorithms in various fields, including scientific areas. Hypervalent iodine compounds (HVIs) have long been applied as useful reactive molecules. The bond dissociation enthalpy (BDE) value is an important indicator of reactivity and stability. Experimentally measuring the BDE value of HVIs is difficult, however, and the value has been estimated by quantum calculations, especially density functional theory (DFT) calculations. Although DFT calculations can access the BDE value with high accuracy, the process is highly time-consuming. Thus, we aimed to reduce the time for predicting the BDE by applying machine learning. We calculated the BDE of more than 1000 HVIs using DFT calculations, and performed machine learning. Converting SMILES strings to Avalon fingerprints and learning using a traditional Elastic Net made it possible to predict the BDE value with high accuracy. Furthermore, an applicability domain search revealed that the learning model could accurately predict the BDE even for uncovered inputs that were not completely included in the training data.
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Affiliation(s)
- Masaya Nakajima
- Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan.
| | - Tetsuhiro Nemoto
- Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan.
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13
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Robidas R, Legault CY. Cyclic Haloiodanes: Syntheses, Applications and Fundamental Studies. Helv Chim Acta 2021. [DOI: 10.1002/hlca.202100111] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Raphaël Robidas
- Department of Chemistry Université de Sherbrooke Sherbrooke Québec J1K 2R1 Canada
| | - Claude Y. Legault
- Department of Chemistry Université de Sherbrooke Sherbrooke Québec J1K 2R1 Canada
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14
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Cuesta SA, Torres FJ, Rincón L, Paz JL, Márquez EA, Mora JR. Effect of the Nucleophile's Nature on Chloroacetanilide Herbicides Cleavage Reaction Mechanism. A DFT Study. Int J Mol Sci 2021; 22:ijms22136876. [PMID: 34206795 PMCID: PMC8268095 DOI: 10.3390/ijms22136876] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 06/21/2021] [Accepted: 06/23/2021] [Indexed: 11/16/2022] Open
Abstract
In this study, the degradation mechanism of chloroacetanilide herbicides in the presence of four different nucleophiles, namely: Br-, I-, HS-, and S2O3-2, was theoretically evaluated using the dispersion-corrected hybrid functional wB97XD and the DGDZVP as a basis set. The comparison of computed activation energies with experimental data shows an excellent correlation (R2 = 0.98 for alachlor and 0.97 for propachlor). The results suggest that the best nucleophiles are those where a sulfur atom performs the nucleophilic attack, whereas the other species are less reactive. Furthermore, it was observed that the different R groups of chloroacetanilide herbicides have a negligible effect on the activation energy of the process. Further insights into the mechanism show that geometrical changes and electronic rearrangements contribute 60% and 40% of the activation energy, respectively. A deeper analysis of the reaction coordinate was conducted, employing the evolution chemical potential, hardness, and electrophilicity index, as well as the electronic flux. The charge analysis shows that the electron density of chlorine increases as the nucleophilic attack occurs. Finally, NBO analysis indicates that the nucleophilic substitution in chloroacetanilides is an asynchronous process with a late transition state for all models except for the case of the iodide attack, which occurs through an early transition state in the reaction.
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Affiliation(s)
- Sebastián A. Cuesta
- Grupo de Química Computacional y Teórica (QCT-USFQ), Departamento de Ingeniería Química, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador; (S.A.C.); (F.J.T.); (L.R.)
- Departamento de Ingeniería Química, Instituto de Simulación Computacional (ISC-USFQ), Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador
| | - F. Javier Torres
- Grupo de Química Computacional y Teórica (QCT-USFQ), Departamento de Ingeniería Química, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador; (S.A.C.); (F.J.T.); (L.R.)
- Departamento de Ingeniería Química, Instituto de Simulación Computacional (ISC-USFQ), Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador
| | - Luis Rincón
- Grupo de Química Computacional y Teórica (QCT-USFQ), Departamento de Ingeniería Química, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador; (S.A.C.); (F.J.T.); (L.R.)
- Departamento de Ingeniería Química, Instituto de Simulación Computacional (ISC-USFQ), Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador
| | - José Luis Paz
- Departamento Académico de Química Inorgánica, Facultad de Química e Ingeniería Química, Universidad Nacional Mayor de San Marcos, Cercado de Lima 15081, Peru;
| | - Edgar A. Márquez
- Grupo de Investigaciones en Química y Biología, Departamento de Química y Biología, Facultad de Ciencias Exactas, Universidad del Norte, Carrera 51B, Km 5, Vía Puerto Colombia, Barranquilla 081007, Colombia
- Correspondence: (E.A.M.); (J.R.M.)
| | - José R. Mora
- Grupo de Química Computacional y Teórica (QCT-USFQ), Departamento de Ingeniería Química, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador; (S.A.C.); (F.J.T.); (L.R.)
- Departamento de Ingeniería Química, Instituto de Simulación Computacional (ISC-USFQ), Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito 170901, Ecuador
- Correspondence: (E.A.M.); (J.R.M.)
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15
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Sun TY, Chen K, Zhou H, You T, Yin P, Wang X. Revisiting the effect of f-functions in predicting the right reaction mechanism for hypervalent iodine reagents. J Comput Chem 2021; 42:470-474. [PMID: 33306842 DOI: 10.1002/jcc.26469] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Accepted: 11/22/2020] [Indexed: 01/10/2023]
Abstract
To understand the effect of f-functions in predicting the right reaction mechanism for hypervalent iodine reagents, we adopt the Ahlrichs basis set family def2-SVP and def2-TZVP to revisit the potential energy surfaces of IBX-mediated oxidation and Togni I's isomerisation. Our results further prove that f-functions (in either Pople, Dunning, or Ahlrichs basis set series) are indispensable to predict the correct rate-determining step of hypervalent iodine reagents. The f-functions have a significant impact on the predicted reaction barriers for processes involving the IX (X = O, OH, CF3 , etc.) bond cleavage and formation, for example, in the reductive elimination step or the hypervalent twist step. We furthermore explore two hypervalent twist modes that account for the different influences of f-functions for IBX and Togni I. Our findings may be helpful for theoretical chemists to appropriately study the reaction mechanism of hypervalent iodine reagents.
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Affiliation(s)
- Tian-Yu Sun
- Key Laboratory of Bio-Inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, PR China.,Shenzhen Bay Laboratory, Shenzhen, 518132, China
| | - Kai Chen
- School of Chemistry and Chemical Engineering, Central South University, Changsha, 410083, PR China.,Lab of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China
| | - Huakang Zhou
- School of Materials Science and Engineering, Central South University of Forestry and Technology, Changsha, 410004, PR China
| | - Tingting You
- Key Laboratory of Bio-Inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, PR China
| | - Penggang Yin
- Key Laboratory of Bio-Inspired Smart Interfacial Science and Technology of Ministry of Education, School of Chemistry, Beihang University, Beijing, 100191, PR China
| | - Xiao Wang
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York, 10010, USA
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16
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Matsumoto K, Nakajima M, Nemoto T. Visible Light-Induced Direct S 0 → T n Transition of Benzophenone Promotes C(sp 3)-H Alkynylation of Ethers and Amides. J Org Chem 2020; 85:11802-11811. [PMID: 32814421 DOI: 10.1021/acs.joc.0c01573] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Benzophenone has an S0 → S1 absorption band at 365 nm. However, the rarely reported S0 → Tn transition occurs upon irradiation at longer wavelengths. Herein, we employed benzophenone as a catalyst and exploited its S0 → Tn transition in C(sp3)-H alkynylations with hypervalent iodine reagents. The selective benzophenone excitation prevented alkynylating reagent decomposition, enabling the reaction to proceed under mild conditions. The reaction mechanism was investigated by spectroscopic and computational studies.
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Affiliation(s)
- Koki Matsumoto
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba 260-8675, Japan
| | - Masaya Nakajima
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba 260-8675, Japan
| | - Tetsuhiro Nemoto
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba 260-8675, Japan
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17
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Watanabe A, Koyamada K, Miyamoto K, Kanazawa J, Uchiyama M. Decarboxylative Bromination of Sterically Hindered Carboxylic Acids with Hypervalent Iodine(III) Reagents. Org Process Res Dev 2020. [DOI: 10.1021/acs.oprd.0c00130] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Ayumi Watanabe
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Kenta Koyamada
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Kazunori Miyamoto
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Junichiro Kanazawa
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Masanobu Uchiyama
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
- Research Initiative for Supra-Materials (RISM), Shinshu University, Ueda 386-8567, Japan
- Cluster of Pioneering Research (CPR), RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
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18
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Nakajima M, Nagasawa S, Matsumoto K, Kuribara T, Muranaka A, Uchiyama M, Nemoto T. A Direct S 0 →T n Transition in the Photoreaction of Heavy-Atom-Containing Molecules. Angew Chem Int Ed Engl 2020; 59:6847-6852. [PMID: 32027078 DOI: 10.1002/anie.201915181] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Indexed: 11/06/2022]
Abstract
According to the Grotthuss-Draper law, light must be absorbed by a substrate to initiate a photoreaction. There have been several reports, however, on the promotion of photoreactions using hypervalent iodine during irradiation with light from a non-absorbing region. This contradiction gave rise to a mystery regarding photoreactions involving hypervalent iodine. We demonstrated that the photoactivation of hypervalent iodine with light from the apparently non-absorbing region proceeds via a direct S0 →Tn transition, which has been considered a forbidden process. Spectroscopic, computational, and synthetic experimental results support this conclusion. Moreover, the photoactivation mode could be extended to monovalent iodine and bromine, as well as bismuth(III)-containing molecules, providing new possibilities for studying photoreactions that involve heavy-atom-containing molecules.
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Affiliation(s)
- Masaya Nakajima
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, 260-8675, Japan.,Cluster for Pioneering Research (CPR), Advanced Elements Chemistry Laboratory, RIKEN, 2-1, Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Sho Nagasawa
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, 260-8675, Japan
| | - Koki Matsumoto
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, 260-8675, Japan
| | - Takahito Kuribara
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, 260-8675, Japan
| | - Atsuya Muranaka
- Cluster for Pioneering Research (CPR), Advanced Elements Chemistry Laboratory, RIKEN, 2-1, Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Masanobu Uchiyama
- Cluster for Pioneering Research (CPR), Advanced Elements Chemistry Laboratory, RIKEN, 2-1, Hirosawa, Wako, Saitama, 351-0198, Japan.,Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Tetsuhiro Nemoto
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, 260-8675, Japan
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19
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Nakajima M, Nagasawa S, Matsumoto K, Kuribara T, Muranaka A, Uchiyama M, Nemoto T. A Direct S
0
→T
n
Transition in the Photoreaction of Heavy‐Atom‐Containing Molecules. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201915181] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Masaya Nakajima
- Graduate School of Pharmaceutical SciencesChiba University 1-8-1, Inohana, Chuo-ku Chiba 260-8675 Japan
- Cluster for Pioneering Research (CPR)Advanced Elements Chemistry LaboratoryRIKEN 2-1, Hirosawa Wako Saitama 351-0198 Japan
| | - Sho Nagasawa
- Graduate School of Pharmaceutical SciencesChiba University 1-8-1, Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Koki Matsumoto
- Graduate School of Pharmaceutical SciencesChiba University 1-8-1, Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Takahito Kuribara
- Graduate School of Pharmaceutical SciencesChiba University 1-8-1, Inohana, Chuo-ku Chiba 260-8675 Japan
| | - Atsuya Muranaka
- Cluster for Pioneering Research (CPR)Advanced Elements Chemistry LaboratoryRIKEN 2-1, Hirosawa Wako Saitama 351-0198 Japan
| | - Masanobu Uchiyama
- Cluster for Pioneering Research (CPR)Advanced Elements Chemistry LaboratoryRIKEN 2-1, Hirosawa Wako Saitama 351-0198 Japan
- Graduate School of Pharmaceutical SciencesThe University of Tokyo 7-3-1, Hongo, Bunkyo-ku Tokyo 113-0033 Japan
| | - Tetsuhiro Nemoto
- Graduate School of Pharmaceutical SciencesChiba University 1-8-1, Inohana, Chuo-ku Chiba 260-8675 Japan
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20
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Liu B, Alegre-Requena JV, Paton RS, Miyake GM. Unconventional Reactivity of Ethynylbenziodoxolone Reagents and Thiols: Scope and Mechanism. Chemistry 2020; 26:2386-2394. [PMID: 31657063 PMCID: PMC7044075 DOI: 10.1002/chem.201904520] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Indexed: 12/12/2022]
Abstract
1,2-Dithio-1-alkenes are biologically active compounds widely implemented throughout organic synthesis, functional materials, coordination chemistry, and pharmaceuticals. Traditional methods for accessing 1,2-dithio-1-alkenes often demand transition metal catalysts, specialized or air-sensitive ligands, high temperatures, and disulfides (R2 S2 ). Herein, a general and efficient strategy utilizing ethynylbenziodoxolone (EBX) reagents and thiols is presented that results in the formation of 1,2-dithio-1-alkenes with excellent regioselectivity and stereoselectivity through unprecedented reactivity between the EBX and the thiol. This operationally simple procedure utilizes mild conditions, which result in a broad substrate scope and high functional-group tolerance. The observed unexpected reactivity has been rationalized through both experimental results and DFT calculations.
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Affiliation(s)
- Bin Liu
- Department of Chemistry, Colorado State University, Fort Collins, Colorado, 80523, USA
| | - Juan V Alegre-Requena
- Department of Chemistry, Colorado State University, Fort Collins, Colorado, 80523, USA
| | - Robert S Paton
- Department of Chemistry, Colorado State University, Fort Collins, Colorado, 80523, USA
- Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK
| | - Garret M Miyake
- Department of Chemistry, Colorado State University, Fort Collins, Colorado, 80523, USA
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21
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Zhao Z, Ma KCY, Legault CY, Murphy GK. Denitrogenative Hydrotrifluoromethylation of Benzaldehyde Hydrazones: Synthesis of (2,2,2-Trifluoroethyl)arenes. Chemistry 2019; 25:11240-11245. [PMID: 31276254 DOI: 10.1002/chem.201902818] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 07/03/2019] [Indexed: 12/20/2022]
Abstract
Reacting hydrazones of arylaldehydes with Togni's CF3 -benziodoxolone reagent, in the presence of potassium hydroxide and cesium fluoride, induces a denitrogenative hydrotrifluoromethylation event to produce (2,2,2-trifluoroethyl)arenes. This novel reaction was tolerant to many electronically-diverse functional groups and substitution patterns, as well as naphthyl- and heteroaryl-derived substrates. Advantages of this process include the easy access to hydrazone precursors on a large scale, speed and operational simplicity, and being transition metal-free.
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Affiliation(s)
- Zhensheng Zhao
- Department of Chemistry, University of Waterloo, 200 University Ave W., Waterloo, ON, N2L3G1, Canada
| | - Kevin C Y Ma
- Department of Chemistry, University of Waterloo, 200 University Ave W., Waterloo, ON, N2L3G1, Canada
| | - Claude Y Legault
- Department of Chemistry, Université de Sherbrooke, Sherbrooke, Québec, J1K2R1, Canada
| | - Graham K Murphy
- Department of Chemistry, University of Waterloo, 200 University Ave W., Waterloo, ON, N2L3G1, Canada
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